Citrus Sinensis ID: 048764
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 295 | 2.2.26 [Sep-21-2011] | |||||||
| F4JKB6 | 576 | Proteinaceous RNase P 3 O | yes | no | 0.925 | 0.473 | 0.536 | 2e-85 | |
| Q680B9 | 528 | Proteinaceous RNase P 2 O | no | no | 0.966 | 0.539 | 0.547 | 1e-81 | |
| Q66GI4 | 572 | Proteinaceous RNase P 1, | no | no | 0.983 | 0.506 | 0.432 | 2e-53 |
| >sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 315 bits (807), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/300 (53%), Positives = 210/300 (70%), Gaps = 27/300 (9%)
Query: 23 ETNFLISLQSCTKSKDLATAISLYESAL-SLNFRLSLHHFNALLYLCSNSATDPSLKDSA 81
E + LI+L SC+K KDL+ A++LY++A+ S + RL+ HF +LLYLCS +DPSL+ A
Sbjct: 89 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQTVA 148
Query: 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTY 140
+ GF++FD+M+S+ + PNE+ VT+VARLAA+K D DYAF+L+K + V VPRLRTY
Sbjct: 149 IDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRTY 208
Query: 141 DPALFCFCENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187
PAL CFC+ LEA+K YE E EI+ALLKVSA TGR KVY+YLQKLR
Sbjct: 209 APALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRE 268
Query: 188 TVRCVNEETGKIIEDWFSGQKV-----NGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV 242
V CV+EET K IE+WF G K NG+ D+ L++ AVLKNGGGWHGLGW+G+GKW+
Sbjct: 269 CVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKWI 328
Query: 243 VKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVK-------ANFSESQ 295
VK+G+V +GKC SC LACVD ++ ETE F S+ LAME++ K A+FSE Q
Sbjct: 329 VKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEFQ 388
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Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 5 |
| >sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 218/305 (71%), Gaps = 20/305 (6%)
Query: 10 SKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESAL-SLNFRLSLHHFNALLYLC 68
S+PNKK+K + NPETN L +L SC+KSKDL+ A++LY++A+ S RLS HF LLYLC
Sbjct: 17 SRPNKKKKVSRNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLC 76
Query: 69 SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128
S S TD SL+ A+ GF +FD+M+S+ + PNEA VTSVARLAA+K + DYAF+++K
Sbjct: 77 SASITDISLQYLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFV 136
Query: 129 NEFNV-VPRLRTYDPALFCFCENLEAQKAY-------------EEQEITALLKVSAGTGR 174
+ V +PRLRTY PAL CFCE LEA+K Y EE EI+ALLKVSA TGR
Sbjct: 137 SVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGR 196
Query: 175 VEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKV-----NGVSCDLGLVKNAVLKNGGG 229
KVY+YL KLR V CV+EET KIIE+WF G+K NG+ D+G+++ AVL NGGG
Sbjct: 197 ENKVYRYLHKLREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGG 256
Query: 230 WHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKA 289
WHG GW+G+GKW VK+G+V +G+C SC QLACVD ++ ET++F S+ ALAM+++ K
Sbjct: 257 WHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKM 316
Query: 290 NFSES 294
N E+
Sbjct: 317 NSCET 321
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Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 187/310 (60%), Gaps = 20/310 (6%)
Query: 4 TTSANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNA 63
+ S N S+ KK+ +PE L C+K D+ A+ LY+ A +LS +H+N
Sbjct: 78 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNV 137
Query: 64 LLYLCS--NSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAF 121
LLY+CS +AT+ S + L GF +F QM+ + V+PNEA T+ ARLA +K D + AF
Sbjct: 138 LLYVCSLAEAATESS-PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAF 196
Query: 122 ELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------------EQEITALLKV 168
+++K+M F + PRLR+Y PALF FC +A KAYE E E+ ALLKV
Sbjct: 197 DMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 255
Query: 169 SAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ---KVNGVSCDLGLVKNAVLK 225
S T +KVY+ LQ+LR VR V++ T +IE+WF + K D+ +++AV+
Sbjct: 256 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVS 315
Query: 226 NGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQ 285
GGGWHG GW+G GKW VKR +DE+G C C +L C+DI+ ETE FA S+ LA E+
Sbjct: 316 GGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACER 375
Query: 286 EVKANFSESQ 295
EVKANF++ Q
Sbjct: 376 EVKANFNQFQ 385
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 295 | ||||||
| 224080794 | 557 | predicted protein [Populus trichocarpa] | 0.972 | 0.515 | 0.615 | 1e-100 | |
| 356547141 | 550 | PREDICTED: pentatricopeptide repeat-cont | 0.962 | 0.516 | 0.614 | 5e-97 | |
| 356543574 | 530 | PREDICTED: pentatricopeptide repeat-cont | 0.932 | 0.518 | 0.609 | 1e-95 | |
| 255576329 | 561 | multidrug resistance pump, putative [Ric | 0.993 | 0.522 | 0.586 | 1e-95 | |
| 224132016 | 557 | predicted protein [Populus trichocarpa] | 0.972 | 0.515 | 0.619 | 8e-95 | |
| 224103055 | 482 | predicted protein [Populus trichocarpa] | 0.935 | 0.572 | 0.606 | 2e-94 | |
| 297799862 | 517 | predicted protein [Arabidopsis lyrata su | 0.976 | 0.557 | 0.542 | 5e-90 | |
| 449480803 | 538 | PREDICTED: proteinaceous RNase P 3-like | 0.969 | 0.531 | 0.537 | 8e-88 | |
| 449466671 | 538 | PREDICTED: proteinaceous RNase P 3-like | 0.969 | 0.531 | 0.537 | 2e-87 | |
| 359486225 | 551 | PREDICTED: pentatricopeptide repeat-cont | 0.922 | 0.493 | 0.553 | 2e-85 |
| >gi|224080794|ref|XP_002306233.1| predicted protein [Populus trichocarpa] gi|222849197|gb|EEE86744.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/302 (61%), Positives = 224/302 (74%), Gaps = 15/302 (4%)
Query: 7 ANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY 66
A+P+ KK K+N PE+ F +L +KSKDL +AISLY++A+S N RL+ H+FN LLY
Sbjct: 2 ASPAN-KKKPKSNQTPESQFSYNLNFYSKSKDLHSAISLYDTAISQNTRLNQHNFNTLLY 60
Query: 67 LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKR 126
LCS S DPS KD +L++GFRVFD M+SN + PNEA +T+VARLAA+K D DYAF+L+K
Sbjct: 61 LCSISLNDPSTKDLSLQYGFRVFDHMVSNGIKPNEASITAVARLAAAKGDGDYAFDLVKN 120
Query: 127 MNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------------EQEITALLKVSAGTG 173
+ +N +PRLRTYDPALFC+CE LE KAYE E EI ALLKVS T
Sbjct: 121 IG-VYNELPRLRTYDPALFCYCEKLEGDKAYEVEEHMRRIGVGLEEGEIAALLKVSVETR 179
Query: 174 RVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGL 233
R E+VY+YLQKLR VRCV EET K+IE WF + NGV D+GLV+ AV +NGGGWHGL
Sbjct: 180 REERVYEYLQKLRKMVRCVREETAKVIEHWFEVFEGNGVELDVGLVREAVSRNGGGWHGL 239
Query: 234 GWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSE 293
GWIG+ KWVV+RGSV+ GKCC CG QL VDIDD ETERFA+SVA LAME+EVKANFSE
Sbjct: 240 GWIGKEKWVVRRGSVNAGGKCCCCGEQLVSVDIDDDETERFAESVAGLAMEREVKANFSE 299
Query: 294 SQ 295
Q
Sbjct: 300 FQ 301
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547141|ref|XP_003541975.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 185/301 (61%), Positives = 217/301 (72%), Gaps = 17/301 (5%)
Query: 12 PNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS 71
P KK+K NPET F L SC+K+KDL AISLY+ A+S N RL+ HHFNALLYLCSNS
Sbjct: 5 PKKKKKGCRNPETKFQFELNSCSKAKDLRGAISLYDDAVSNNTRLNQHHFNALLYLCSNS 64
Query: 72 ATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF 131
DPSLK +AL +GFR F M + V+PNEA VT+VARLAA+K D+DYAFEL+K M +
Sbjct: 65 VADPSLKPTALDYGFRAFRHMSALAVLPNEATVTAVARLAAAKGDADYAFELVKSMGKNY 124
Query: 132 -NVVPRLRTYDPALFCFCENLEAQKAYEEQE-------------ITALLKVSAGTGRVEK 177
N +PRLRTYDPALFCFCE L+A KAYE +E + ALLKVSA GRV+K
Sbjct: 125 NNALPRLRTYDPALFCFCEMLDADKAYEVEEHMNGVGVSLEEAELAALLKVSARCGRVDK 184
Query: 178 VYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVS---CDLGLVKNAVLKNGGGWHGLG 234
VY+YL +LRS+VRCV+E T +IE+WF G K + V D G VK VL+NGGGWHG G
Sbjct: 185 VYEYLHRLRSSVRCVSESTAVVIEEWFRGSKASEVGEAEFDAGRVKEGVLRNGGGWHGQG 244
Query: 235 WIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSES 294
W+G+G WVV R SV G CC CG QL CVDIDD ETE+FA SVAALA E+EVKANFSE
Sbjct: 245 WVGKGDWVVSRTSVVADGHCCCCGQQLVCVDIDDVETEKFAGSVAALAFEREVKANFSEF 304
Query: 295 Q 295
Q
Sbjct: 305 Q 305
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543574|ref|XP_003540235.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 178/292 (60%), Positives = 210/292 (71%), Gaps = 17/292 (5%)
Query: 21 NPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDS 80
NPE F L +C+K+KDL AISLY+ A+S N RL+ HHFNALLYLCSNS DPSLK +
Sbjct: 15 NPEAKFQFELNTCSKAKDLRGAISLYDDAVSNNTRLNQHHFNALLYLCSNSVADPSLKPT 74
Query: 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF-NVVPRLRT 139
AL +GFR F M + V+PNEA VT+VARLAA+K D+DYAF+L+K M + N +PRLRT
Sbjct: 75 ALDYGFRAFCHMSALAVLPNEATVTAVARLAAAKGDADYAFDLVKSMGKNYNNALPRLRT 134
Query: 140 YDPALFCFCENLEAQKAY-------------EEQEITALLKVSAGTGRVEKVYQYLQKLR 186
YDPALFCFCE L+A KAY EE E+ ALLKVSA GR +KVY+YL KLR
Sbjct: 135 YDPALFCFCEMLDADKAYEVEEHMSGVGVSLEEAEVAALLKVSARCGRADKVYEYLHKLR 194
Query: 187 STVRCVNEETGKIIEDWFSGQK---VNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVV 243
S+VRCV+E + +IE+WF G K V V + G VK VL+NGGGWHG GW+G+G WVV
Sbjct: 195 SSVRCVSESSAVVIEEWFRGSKSSEVGEVEFEAGQVKEGVLRNGGGWHGQGWVGKGDWVV 254
Query: 244 KRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSESQ 295
R SV G CC CG QL CVDIDDAE E+FA SVAALA E+EVKANFSE Q
Sbjct: 255 SRTSVGADGHCCCCGEQLVCVDIDDAEREKFAGSVAALAFEREVKANFSEFQ 306
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576329|ref|XP_002529057.1| multidrug resistance pump, putative [Ricinus communis] gi|223531469|gb|EEF33301.1| multidrug resistance pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 218/307 (71%), Gaps = 14/307 (4%)
Query: 2 SNTTSANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHF 61
+ TT+ P K K N PE+ F +L +KSKDL +AISLY++A+S +L+ HH+
Sbjct: 3 TGTTTTAPVGKKKPNKKNQTPESQFNYNLNFYSKSKDLNSAISLYKTAISNKTQLNQHHY 62
Query: 62 NALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAF 121
N LLYLCS S DPS K+ AL++GF +F+ M++ + NEA +T++ARLAA+K D DYAF
Sbjct: 63 NTLLYLCSISLNDPSEKELALQNGFDIFEHMVATGIKRNEASITAIARLAAAKGDGDYAF 122
Query: 122 ELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------------EQEITALLKV 168
LIK M + N +PRLRTYDP LFCFCE LEA KAYE E EI ALLKV
Sbjct: 123 NLIKNMLVD-NQLPRLRTYDPVLFCFCEKLEAFKAYEVEDHIVSMGMNLEELEIAALLKV 181
Query: 169 SAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGG 228
S T E+VY YLQKLR TVRCV EET KI+EDWF +VNG D+GLV+ AV+KNGG
Sbjct: 182 SVETKNKERVYGYLQKLRKTVRCVKEETAKIVEDWFKDFEVNGKELDVGLVRKAVVKNGG 241
Query: 229 GWHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVK 288
GWHGLGWI +GKW VKRG++D G+CC CG LACVDIDD ETERFA S+A LAME+EVK
Sbjct: 242 GWHGLGWIEKGKWGVKRGNMDMDGRCCCCGESLACVDIDDLETERFAGSLAGLAMEREVK 301
Query: 289 ANFSESQ 295
ANFSE Q
Sbjct: 302 ANFSEFQ 308
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132016|ref|XP_002328164.1| predicted protein [Populus trichocarpa] gi|222837679|gb|EEE76044.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 187/302 (61%), Positives = 223/302 (73%), Gaps = 15/302 (4%)
Query: 7 ANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY 66
A+P+ KK K+N PE+ F +L +KSKDL +AISLY++A+S N RL+ H+FN LLY
Sbjct: 2 ASPAN-KKKPKSNQTPESQFSYNLNFYSKSKDLHSAISLYDTAISQNTRLNQHNFNTLLY 60
Query: 67 LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKR 126
LCS S DPS KD +L++GFRVFD M+SN + PNEA +T+VARLAA+K D DYAF+L+K
Sbjct: 61 LCSISLNDPSTKDLSLQYGFRVFDHMVSNGIKPNEASITAVARLAAAKGDGDYAFDLVKN 120
Query: 127 MNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------------EQEITALLKVSAGTG 173
+ +N +PRLRTYDPALFC+CE LE KAYE E EI ALLKVS T
Sbjct: 121 IG-VYNELPRLRTYDPALFCYCEKLEGDKAYEVEEHMRRIGVGLEEGEIAALLKVSVETR 179
Query: 174 RVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGL 233
R E+VY YLQKLR VRCV EET K+IE WF + NGV D+GLV+ AV +NGGGWHGL
Sbjct: 180 REERVYGYLQKLRKMVRCVREETAKVIEHWFEVFEGNGVELDVGLVREAVSRNGGGWHGL 239
Query: 234 GWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSE 293
GWIG+ KWVV+RGSVD GKCC CG QL VDIDD ETERFA+SVA LAME+EVKANFSE
Sbjct: 240 GWIGKEKWVVRRGSVDAGGKCCCCGGQLVSVDIDDDETERFAESVAGLAMEREVKANFSE 299
Query: 294 SQ 295
Q
Sbjct: 300 FQ 301
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103055|ref|XP_002312906.1| predicted protein [Populus trichocarpa] gi|222849314|gb|EEE86861.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/290 (60%), Positives = 213/290 (73%), Gaps = 14/290 (4%)
Query: 19 NPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLK 78
N PE+ F +L +KSKDL +AISLY++A+S + RL+ H FN LLYLCS S DPS +
Sbjct: 10 NQTPESQFNYNLNFYSKSKDLHSAISLYDTAISQDTRLNQHGFNTLLYLCSVSLNDPSTE 69
Query: 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138
+ ALR GFR+FD M+SN + PNEA +T+VARLAA+K D DYAF+L+K + +N +PRLR
Sbjct: 70 ELALRCGFRIFDHMVSNGIKPNEASITAVARLAAAKGDGDYAFDLVKNVG-AYNELPRLR 128
Query: 139 TYDPALFCFCENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKL 185
TYDPALFCFCE LEA KAYE E EI ALLKVS + ++VY YLQKL
Sbjct: 129 TYDPALFCFCEKLEAHKAYEVEEHMGSMGVGLEEGEIAALLKVSVESRNEKRVYGYLQKL 188
Query: 186 RSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKR 245
R VRCV ET K+IE WF+ + +GV D+ LV+ AV +NGGGWHGLGWIG+GKWV+KR
Sbjct: 189 RKMVRCVRGETAKVIEHWFAVFEGSGVELDVDLVREAVSRNGGGWHGLGWIGKGKWVLKR 248
Query: 246 GSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSESQ 295
GSVD GKCC CG QL VDIDD ETERFA+SVA LAM++EVKANFSE Q
Sbjct: 249 GSVDVGGKCCCCGEQLVSVDIDDDETERFAESVAGLAMQREVKANFSEFQ 298
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799862|ref|XP_002867815.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313651|gb|EFH44074.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 171/315 (54%), Positives = 225/315 (71%), Gaps = 27/315 (8%)
Query: 8 NPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESAL-SLNFRLSLHHFNALLY 66
+PSKPNKK+K + NPE + LI+L SC+K KDL+ A++LY++A+ S + RL+ HF +LLY
Sbjct: 15 SPSKPNKKQKGSRNPEKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLY 74
Query: 67 LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKR 126
LCS +DPSL+ A+ GF++FD+M+S+ + PNE+ VT+VARLAA+K D DYAF+L+K
Sbjct: 75 LCSAFISDPSLQTLAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKD 134
Query: 127 MNNEFNV-VPRLRTYDPALFCFCENLEAQKAYE-------------EQEITALLKVSAGT 172
+ V VPRLRTY PAL CFCE+LEA+K YE E EI+ALLKVSA T
Sbjct: 135 IVVVGGVSVPRLRTYAPALLCFCESLEAEKGYEVEEHMDASGIMLEEAEISALLKVSAAT 194
Query: 173 GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVS-----CDLGLVKNAVLKNG 227
GR KVY+YL KLR + CV+EET K IE+WF G K + +S CD+ L++ AV KNG
Sbjct: 195 GRENKVYRYLHKLRECIGCVSEETSKTIEEWFYGVKASEISDKTIGCDIELLRAAVSKNG 254
Query: 228 GGWHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEV 287
GGWHGLGW+G+GKW+VK+G+V +GKC SCG LACVD ++ ETE F S+ ALAME++
Sbjct: 255 GGWHGLGWVGEGKWIVKKGNVSPAGKCLSCGEHLACVDTNEVETENFVNSLVALAMERKA 314
Query: 288 K-------ANFSESQ 295
K A+FSE Q
Sbjct: 315 KMNSCEPMADFSEFQ 329
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480803|ref|XP_004156000.1| PREDICTED: proteinaceous RNase P 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 214/307 (69%), Gaps = 21/307 (6%)
Query: 1 MSNTTSANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHH 60
M +T SA K +K N +PE F + L C++ KDL +AI+L E+A+S + + H
Sbjct: 1 MDSTGSAKARKKSK----NQSPEVKFQLDLTDCSRRKDLLSAITLCETAVSEKLKFNQQH 56
Query: 61 FNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYA 120
FN LLYLCS + +DPSLK+SA+ GFRV++ + S VIPNEA VT+VARLAA+K+D D A
Sbjct: 57 FNTLLYLCSTAISDPSLKESAVSFGFRVYNLLQSIGVIPNEATVTAVARLAAAKRDGDSA 116
Query: 121 FELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY-------------EEQEITALLK 167
FEL+K + ++ V PRLRTYDPAL CFCENLE KAY EE +I+ALLK
Sbjct: 117 FELVKTI-GKYKVTPRLRTYDPALICFCENLEVDKAYEVEQHMNSAGVELEEPQISALLK 175
Query: 168 VSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGV---SCDLGLVKNAVL 224
+S+ TG+ +KVY+YL KLR V+CV+E T KIIE WF +K + + + D+GL++ A+L
Sbjct: 176 LSSDTGKEDKVYEYLHKLRRVVKCVSESTAKIIEGWFCSEKASDIGESTMDIGLIREAIL 235
Query: 225 KNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAME 284
NGGGWHG GWIG+G WVVKR +V SGKCC C QL VDI AETE FAQS+AALA+E
Sbjct: 236 SNGGGWHGKGWIGKGNWVVKRTNVYSSGKCCCCAQQLVGVDISCAETENFAQSLAALAIE 295
Query: 285 QEVKANF 291
+E + NF
Sbjct: 296 REAQPNF 302
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466671|ref|XP_004151049.1| PREDICTED: proteinaceous RNase P 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 214/307 (69%), Gaps = 21/307 (6%)
Query: 1 MSNTTSANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHH 60
M +T SA K +K N +PE F + L C++ KDL +AI+L E+A+S + + H
Sbjct: 1 MDSTGSAKARKKSK----NQSPEVKFQLDLTDCSRRKDLLSAITLCETAVSEKLKFNQQH 56
Query: 61 FNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYA 120
FN LLYLCS + +DPSLK+SA+ GFRV++ + S VIPNEA VT+VARLAA+K+D D A
Sbjct: 57 FNTLLYLCSTAISDPSLKESAVSFGFRVYNLLQSIGVIPNEATVTAVARLAAAKRDGDSA 116
Query: 121 FELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY-------------EEQEITALLK 167
FEL+K + ++ V PRLRTYDPAL CFCENLE KAY EE +I+ALLK
Sbjct: 117 FELVKTI-GKYKVTPRLRTYDPALICFCENLEVDKAYEVEQHMNSAGVELEEPQISALLK 175
Query: 168 VSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGV---SCDLGLVKNAVL 224
+S+ TG+ +KVY+YL KLR V+CV+E T KIIE WF +K + + + D+GL++ A+L
Sbjct: 176 LSSDTGKEDKVYEYLHKLRRFVKCVSESTAKIIEGWFCSEKASDIGESTMDIGLIREAIL 235
Query: 225 KNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAME 284
NGGGWHG GWIG+G WVVKR +V SGKCC C QL VDI AETE FAQS+AALA+E
Sbjct: 236 SNGGGWHGKGWIGKGNWVVKRTNVYSSGKCCCCAQQLVGVDISCAETENFAQSLAALAIE 295
Query: 285 QEVKANF 291
+E + NF
Sbjct: 296 REAQPNF 302
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486225|ref|XP_003633416.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 160/289 (55%), Positives = 205/289 (70%), Gaps = 17/289 (5%)
Query: 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSAL 82
E F L +C+K +DL+ A++L+ESA+S NFRL +HFNALLYLC+ S +PS K AL
Sbjct: 12 EGKFRFDLDTCSKRRDLSGAVALFESAVSQNFRLIHYHFNALLYLCTISIDEPSSKALAL 71
Query: 83 RHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDP 142
+GFR+FD M+++ V PNEA +T+VARLAA+K D D AFE+++ M ++ + PRLRTY P
Sbjct: 72 DYGFRIFDHMVNSGVTPNEATITAVARLAAAKSDGDLAFEVVRTM-GKYELSPRLRTYGP 130
Query: 143 ALFCFCENLEAQKAY-------------EEQEITALLKVSAGTGRVEKVYQYLQKLRSTV 189
AL+ FC NLE +KA+ EE E+ ALLKVSA GR +KVY YL KLR+ V
Sbjct: 131 ALYWFCANLEGEKAWAVEEHMVSMGVHPEEPELAALLKVSAEMGRGDKVYAYLHKLRTAV 190
Query: 190 RCVNEETGKIIEDWFSGQ---KVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRG 246
R V+E T +IIE WF G+ +V GV C LG ++ LKNGGGWHG GWIG+GKW+V R
Sbjct: 191 RSVSESTAEIIEGWFCGEAASEVGGVDCCLGAIEEVALKNGGGWHGQGWIGKGKWLVCRA 250
Query: 247 SVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSESQ 295
VD SG+C SC QLA VDID AETE F +SVAA+AME+EV++NF E Q
Sbjct: 251 KVDSSGQCGSCREQLATVDIDRAETETFLESVAAMAMEREVRSNFREFQ 299
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 295 | ||||||
| TAIR|locus:2141662 | 576 | PRORP3 "AT4G21900" [Arabidopsi | 0.813 | 0.416 | 0.476 | 2.1e-52 | |
| TAIR|locus:2059824 | 528 | PRORP2 "proteinaceous RNase P | 0.813 | 0.454 | 0.484 | 2.1e-52 | |
| TAIR|locus:2045432 | 572 | PRORP1 "proteinaceous RNase P | 0.894 | 0.461 | 0.415 | 2e-49 | |
| TAIR|locus:2175178 | 156 | AT5G60430 [Arabidopsis thalian | 0.261 | 0.493 | 0.441 | 3e-14 |
| TAIR|locus:2141662 PRORP3 "AT4G21900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 122/256 (47%), Positives = 162/256 (63%)
Query: 23 ETNFLISLQSCTKSKDLATAISLYESAL-SLNFRLSLHHFNALLYLCSNSATDPSLKDSA 81
E + LI+L SC+K KDL+ A++LY++A+ S + RL+ HF +LLYLCS +DPSL+ A
Sbjct: 89 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQTVA 148
Query: 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTY 140
+ GF++FD+M+S+ + PNE+ VT+VARLAA+K D DYAF+L+K + V VPRLRTY
Sbjct: 149 IDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRTY 208
Query: 141 DPALFCFCENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187
PAL CFC+ LEA+K YE E EI+ALLKVSA TGR KVY+YLQKLR
Sbjct: 209 APALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRE 268
Query: 188 TVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNXXXXXXXXXXXXXKWVVKRGS 247
V CV+EET K IE+WF G K + VS D G+ + L WV +
Sbjct: 269 CVGCVSEETSKAIEEWFYGVKASEVS-DNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 248 VDESGKCCSCGNQLAC 263
+ + G S G L+C
Sbjct: 328 IVKKGNVSSAGKCLSC 343
|
|
| TAIR|locus:2059824 PRORP2 "proteinaceous RNase P 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 124/256 (48%), Positives = 158/256 (61%)
Query: 23 ETNFLISLQSCTKSKDLATAISLYESAL-SLNFRLSLHHFNALLYLCSNSATDPSLKDSA 81
ETN L +L SC+KSKDL+ A++LY++A+ S RLS HF LLYLCS S TD SL+ A
Sbjct: 30 ETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCSASITDISLQYLA 89
Query: 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTY 140
+ GF +FD+M+S+ + PNEA VTSVARLAA+K + DYAF+++K + V +PRLRTY
Sbjct: 90 IDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRTY 149
Query: 141 DPALFCFCENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187
PAL CFCE LEA+K YE E EI+ALLKVSA TGR KVY+YL KLR
Sbjct: 150 APALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLRE 209
Query: 188 TVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNXXXXXXXXXXXXXKWVVKRGS 247
V CV+EET KIIE+WF G+K V D G+ + + WV +
Sbjct: 210 YVGCVSEETLKIIEEWFCGEKAGEVG-DNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 248 VDESGKCCSCGNQLAC 263
+ G S G L+C
Sbjct: 269 TVKKGNVSSTGRCLSC 284
|
|
| TAIR|locus:2045432 PRORP1 "proteinaceous RNase P 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 118/284 (41%), Positives = 166/284 (58%)
Query: 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCS--NSATDPSLKDSALRHGFR 87
L C+K D+ A+ LY+ A +LS +H+N LLY+CS +AT+ S + L GF
Sbjct: 104 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS-PNPGLSRGFD 162
Query: 88 VFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147
+F QM+ + V+PNEA T+ ARLA +K D + AF+++K+M F + PRLR+Y PALF F
Sbjct: 163 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGF 221
Query: 148 CENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194
C +A KAYE E E+ ALLKVS T +KVY+ LQ+LR VR V++
Sbjct: 222 CRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 281
Query: 195 ETGKIIEDWFSGQKVN--GVS-CDLGLVKNAVLKNXXXXXXXXXXXXXKWVVKRGSVDES 251
T +IE+WF + GV D+ +++AV+ KW VKR +DE+
Sbjct: 282 STFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDEN 341
Query: 252 GKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSESQ 295
G C C +L C+DI+ ETE FA S+ LA E+EVKANF++ Q
Sbjct: 342 GVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQ 385
|
|
| TAIR|locus:2175178 AT5G60430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 218 LVKNAVLKNXXXXXXXXXXXXXKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQS 277
+++ AVLKN KW+VK+G+V +G+C SC QLACVD ++ ET++F S
Sbjct: 1 MLREAVLKNGGGWHGHGWVGDGKWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDS 60
Query: 278 VAALAMEQEVKANFSES 294
+ ALAME++ K N ES
Sbjct: 61 LVALAMERKAKMNSCES 77
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.129 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 295 267 0.00095 114 3 11 22 0.48 33
32 0.39 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 602 (64 KB)
Total size of DFA: 190 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.52u 0.11s 22.63t Elapsed: 00:00:01
Total cpu time: 22.52u 0.11s 22.63t Elapsed: 00:00:01
Start: Tue May 21 01:48:38 2013 End: Tue May 21 01:48:39 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 295 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.97 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.97 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.97 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.97 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.96 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.95 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.59 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.46 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.28 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.18 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.14 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.66 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.62 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.61 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.54 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.51 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.46 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.39 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.23 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.18 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.13 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.11 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.1 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.99 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.96 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 97.95 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 97.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.6 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.6 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.51 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.48 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.33 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.33 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.31 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.21 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.13 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.09 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.01 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 96.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.95 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 96.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 96.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 96.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.59 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.57 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.54 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.52 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.51 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.5 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.45 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.34 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.14 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.95 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 95.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 95.87 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.79 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.71 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 95.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 95.5 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 95.38 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 95.38 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.35 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 95.34 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 95.09 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.08 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 95.08 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.06 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.0 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 94.97 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 94.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 94.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.69 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 94.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 94.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 94.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 94.46 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 94.18 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 94.12 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 94.07 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.02 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 93.98 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 93.94 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.89 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 93.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 93.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 93.75 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 93.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 93.66 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 93.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 93.62 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 93.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 92.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 92.86 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 92.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 92.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 92.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 92.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 92.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 92.04 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.96 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 91.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 91.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 91.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 91.06 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 91.03 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 91.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 90.97 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 90.93 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 90.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 90.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 90.65 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 90.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 90.55 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 90.49 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 90.22 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 90.2 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 89.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 89.34 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 89.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 88.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 88.51 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.26 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 88.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 88.15 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 87.98 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 87.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 86.94 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 86.9 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 86.63 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 86.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 86.11 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 86.08 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 85.73 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 85.51 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 85.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 85.13 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 84.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 84.83 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 84.76 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 84.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 84.59 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 84.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 83.61 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 83.58 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.47 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 83.28 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.18 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 82.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 82.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 81.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 81.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 81.44 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 81.19 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 80.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 80.63 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=258.68 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-C--------------------------CCc
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-D--------------------------PSL 77 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~--------------------------~~~ 77 (295)
+||++|.+|++.|+.++|+.+|++|.+.|+.||..||+++|++|.+.+. + .+.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 9999999999999999999999999999999999999999997765543 1 023
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
++|.+++|.++|++|.+ ||.+|||+||.+|+++|+.++|+++|++|. ..|+.||.+||+++|.+|++.|++++|.
T Consensus 372 k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 45556666666665543 555556666666666666666666666665 5555566666666666666555555555
Q ss_pred c--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH--------------------------
Q 048764 158 E--------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG-------------------------- 197 (295)
Q Consensus 158 ~--------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~-------------------------- 197 (295)
+ ..+|++||++|++.|++++|++++++| +..|+..+|
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 5 012555555555555555555555543 234444444
Q ss_pred --------HHHHHHHhccccCCccc-chhHHHHHHHhcCCc-cccCCCccccceEEeeee--------------------
Q 048764 198 --------KIIEDWFSGQKVNGVSC-DLGLVKNAVLKNGGG-WHGLGWIGQGKWVVKRGS-------------------- 247 (295)
Q Consensus 198 --------~~l~~~~~~~~~g~~~~-~~~~v~~~~~~~g~~-~~~~~w~~~~~w~~~~~~-------------------- 247 (295)
..+.+.|.. .++| ++..+++.|.+.|.. .+|.+|+..++.++.+..
T Consensus 524 ~p~~~~~y~~L~~~y~~----~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 599 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNS----SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMK 599 (697)
T ss_pred CCCCCcchHHHHHHHHh----CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHH
Confidence 444444433 5678 477899999998875 688999999888877653
Q ss_pred -eCCCCCcCcCCCeeeEeeCChHHHHHHH
Q 048764 248 -VDESGKCCSCGNQLACVDIDDAETERFA 275 (295)
Q Consensus 248 -v~~~g~C~~c~~~l~~~~l~~~e~~~~~ 275 (295)
+...|+++. ......|++++|++..+
T Consensus 600 ~~~~~gy~~~--~~~~~~~~~~~~~~~~~ 626 (697)
T PLN03081 600 EISEYGYVAE--ENELLPDVDEDEEKVSG 626 (697)
T ss_pred HHHHcCCCCC--cchhhccccHHHHHHHH
Confidence 344677763 34445788888887653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=260.05 Aligned_cols=183 Identities=14% Similarity=0.236 Sum_probs=140.5
Q ss_pred hhcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Q 048764 15 KRKTNPNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQML 93 (295)
Q Consensus 15 ~~~~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~ 93 (295)
.++.+..|+. +|+++|.+|++.|++++|+.+|++|.+.|+.||.+|||+||.+|.+.+. +++|.++|++|.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~--------~eeAl~lf~~M~ 534 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ--------VAKAFGAYGIMR 534 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC--------HHHHHHHHHHHH
Confidence 3455666665 8888888888888888888888888877888888888888885555442 778888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhh--cCCCCCcccHHHHHHHHHhcCCHHHhhc-------------
Q 048764 94 SNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNE--FNVVPRLRTYDPALFCFCENLEAQKAYE------------- 158 (295)
Q Consensus 94 ~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------- 158 (295)
+.|+.||.+|||+||.+|++.|++++|+++|++|. . .|+.||.+||++||.+|++.|++++|.+
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~-~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK-AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888886 4 5778888888888888888888887777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
...|++||.+|++.|++++|..+|++|...|+.|+..||..+...+..
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 134788888888888888888888888888888887788777776643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=256.25 Aligned_cols=208 Identities=16% Similarity=0.195 Sum_probs=128.0
Q ss_pred hcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-C-------------------
Q 048764 16 RKTNPNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-D------------------- 74 (295)
Q Consensus 16 ~~~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~------------------- 74 (295)
.+.+..|+. ||+++|.+|++.|++++|+++|++|++.|+.||.+|||+||.+|.+.+. +
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 344556665 7777777777777777777777777777777777777777775554442 0
Q ss_pred ---------CCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 75 ---------PSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 75 ---------~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
.+.++|.+++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|. ..|+.||..||++||.
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHH
Confidence 011333355666666666666666666666666666666666666666666666 6666666666666666
Q ss_pred HHHhcCCHHHhhc-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCc
Q 048764 146 CFCENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGV 212 (295)
Q Consensus 146 ~~~~~g~~~~A~~-------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~ 212 (295)
+|++.|++++|.+ ...|++||.+|++.|++++|.++|++|...++.|+..+|+.++..|+. .+
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k----~G 733 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE----GN 733 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CC
Confidence 6666666666655 223666666666666666666666666666666666666666666633 22
Q ss_pred cc-chhHHHHHHHhcCC
Q 048764 213 SC-DLGLVKNAVLKNGG 228 (295)
Q Consensus 213 ~~-~~~~v~~~~~~~g~ 228 (295)
.+ ++..+.+.|...|.
T Consensus 734 ~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGL 750 (1060)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 32 23344444554444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=252.94 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=139.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------------HHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------------EQEIT 163 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------------e~~y~ 163 (295)
.||.++||+||.+|+++|+.++|+++|++|. ..|+.||.+||+++|.+|++.|++++|.+ ..+|+
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 4566778899999999999999999999999 99999999999999999999999999988 22499
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc------------------------------cccCCcc
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG------------------------------QKVNGVS 213 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~------------------------------~~~g~~~ 213 (295)
+|+++|++.|++++|.+++++|. ..|+..+|..|...+.. .++..++
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 99999999999999999999994 68999988876665432 1234567
Q ss_pred c-chhHHHHHHHhcCCc-cccCCCccccceEEeeee---------------------eCCCCCcCcCCCeeeEeeCChHH
Q 048764 214 C-DLGLVKNAVLKNGGG-WHGLGWIGQGKWVVKRGS---------------------VDESGKCCSCGNQLACVDIDDAE 270 (295)
Q Consensus 214 ~-~~~~v~~~~~~~g~~-~~~~~w~~~~~w~~~~~~---------------------v~~~g~C~~c~~~l~~~~l~~~e 270 (295)
| ++..+++.|.+.|.. .+|.+||+.+..++.+.. +...|+.+.... ..|.++||
T Consensus 707 ~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~---~~~~~~~~ 783 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESS---SMDEIEVS 783 (857)
T ss_pred hHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcch---hccccHHH
Confidence 8 578999999998887 588999999998887754 344566553322 23667777
Q ss_pred HHHHH
Q 048764 271 TERFA 275 (295)
Q Consensus 271 ~~~~~ 275 (295)
++..+
T Consensus 784 k~~~~ 788 (857)
T PLN03077 784 KDDIF 788 (857)
T ss_pred HHHHH
Confidence 76653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=236.84 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=162.8
Q ss_pred cCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 17 KTNPNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 17 ~~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
+.+..|+. +||+||++|++.|++++|..+|++|. .+|+++||+||.+|.+.+. .++|.++|++|.+.
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~--------~~eA~~lf~~M~~~ 319 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGY--------SEEALCLYYEMRDS 319 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCC--------HHHHHHHHHHHHHc
Confidence 44566666 99999999999999999999999995 4688999999996666663 99999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------HHHHHHHH
Q 048764 96 NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------EQEITALL 166 (295)
Q Consensus 96 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------e~~y~~ll 166 (295)
|+.||..||+++|++|++.|++++|.+++..|. +.|+.||..+|++||++|++.|++++|.+ ..+||+||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999 22399999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 167 KVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
.+|++.|+.++|.++|++|...|+.||..|+..+...+..
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888744
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=236.82 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=159.8
Q ss_pred CcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCC-------------------------
Q 048764 21 NPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATD------------------------- 74 (295)
Q Consensus 21 ~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~------------------------- 74 (295)
.|+. +||++|.+|++.|++++|+.+|++|+..|+.||.+||+++|++|...+.-
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 4555 99999999999999999999999999999999999999999877643210
Q ss_pred ---------------------------------CCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048764 75 ---------------------------------PSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAF 121 (295)
Q Consensus 75 ---------------------------------~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 121 (295)
.+.+.|..++|+++|.+|...|+.||.+||+++|.+|++.|+++.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 01245556777777777777777777777777777777777777777
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCC
Q 048764 122 ELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCV 192 (295)
Q Consensus 122 ~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p 192 (295)
+++..|. ..|+.||..+||+||.+|++.|++++|.+ ...||+||.+|++.|++++|.++|++|.+.++.|
T Consensus 309 ~l~~~~~-~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 309 EMHGYVV-KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHH-HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 7777777 77777888888888888888888888877 2239999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccccCCcccc-hhHHHHHHHhcCC
Q 048764 193 NEETGKIIEDWFSGQKVNGVSCD-LGLVKNAVLKNGG 228 (295)
Q Consensus 193 ~~~t~~~l~~~~~~~~~g~~~~~-~~~v~~~~~~~g~ 228 (295)
+..|+..+...+.. .+.++ +..+.+.+.+.|.
T Consensus 388 d~~t~~~ll~a~~~----~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 388 DEITIASVLSACAC----LGDLDVGVKLHELAERKGL 420 (857)
T ss_pred CceeHHHHHHHHhc----cchHHHHHHHHHHHHHhCC
Confidence 99999998887744 22332 3445555555554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=98.74 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
||+++||+||++|++.|++++|+++|++|. +.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~-~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK-KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 99999999999999999986
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=89.45 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=45.6
Q ss_pred cHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 048764 22 PET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCS 69 (295)
Q Consensus 22 p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~ 69 (295)
|+. +||++|++|++.|++++|+++|++|++.|++||.+||++||++|.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 566 999999999999999999999999999999999999999999765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.8e-12 Score=112.97 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=138.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 23 ~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
+.||.+||.+.||--..+.|.++|.+-.....+.+..+||.||.+-+-. ...++..+|.+..+.||..
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~------------~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS------------VGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh------------ccHHHHHHHHHhhcCCchH
Confidence 4499999999999999999999999999888999999999999954332 2368899999999999999
Q ss_pred HHHHHHHHHHcCCCHHH----HHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------------------
Q 048764 103 LVTSVARLAASKKDSDY----AFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------------------- 158 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~----A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-------------------- 158 (295)
|||+++...++.|+++. |.+++.+|+ .-||.|..-+|..+|.-+++.++..+...
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999998765 478999999 99999999999999999999887644322
Q ss_pred -------------------------------------------HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 159 -------------------------------------------EQE-ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 159 -------------------------------------------e~~-y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
++- |.-++.+.|.....+.-+..++.|.-+-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 000 455666666666777777777777766667777
Q ss_pred hHHHHHHHHHhc
Q 048764 195 ETGKIIEDWFSG 206 (295)
Q Consensus 195 ~t~~~l~~~~~~ 206 (295)
.+...|.+....
T Consensus 434 ~~m~~~lrA~~v 445 (625)
T KOG4422|consen 434 QTMIHLLRALDV 445 (625)
T ss_pred hhHHHHHHHHhh
Confidence 776666554433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-10 Score=102.26 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
+++.++..|.+.|++++|+.+|+.+.+.+-.++. ..|..+...+...+ ++++|...|+++.+.. +.+
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~-p~~ 213 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG--------DLDAARALLKKALAAD-PQC 213 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHhHC-cCC
Confidence 5555555555555555555555555543322111 11222222222222 2777777777776643 233
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHHHHHHHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQEITALLKVS 169 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~y~~ll~~~ 169 (295)
..++..+...|.+.|++++|.++|+++. ..+-.+...+++.+..+|++.|+.++|.. ...+..+...+
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~ 292 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 5566777777777888888888888777 44322223456777777888888877777 11256677778
Q ss_pred HhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 170 AGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
.+.|++++|..++.++... .|+..++..+...+
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 8888888888888877664 57766666554444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=100.20 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...+. +++|.++|+++.+.+......++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGD--------YAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHChhhHHHHH
Confidence 45667778899999999999999998753 3345566666674444442 99999999999875433335678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHHHHHHHHHHHh--
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQEITALLKVSAG-- 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~y~~ll~~~~~-- 171 (295)
+.++.+|...|++++|..+++.+. .. .|+...+..+...+.+.|+.++|.. ...++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~-~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRAL-EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 999999999999999999999998 54 5787788999999999999999998 2347777877765
Q ss_pred -cCCHHHHHHHHHHHHHcccCCChh
Q 048764 172 -TGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 172 -~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.|+.+++..++++|.+.++.|++.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999988888876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.1e-11 Score=70.39 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+|+.||.+|||+||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999999995
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-09 Score=94.82 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=101.9
Q ss_pred CCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC
Q 048764 55 RLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV 133 (295)
Q Consensus 55 ~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi 133 (295)
+-...||.+||. +|.-.. .++|+++|++-.....+.+..+||.+|.+-+..-+ ..++.+|. ...+
T Consensus 204 PKT~et~s~mI~Gl~K~~~---------~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi-sqkm 269 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSS---------LERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI-SQKM 269 (625)
T ss_pred CCCchhHHHHHHHHHHHHh---------HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH-Hhhc
Confidence 456689999999 777766 99999999999998899999999999987765433 78999999 9999
Q ss_pred CCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 134 VPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 134 ~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
+||..|||++|++.++.|.++.| ...|.+++.+|++-|+.|+-.++..|+..|+.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~a------------------r~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDA------------------RKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHH------------------HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 99999999988888888877654 23467888999999999999999888888865
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-09 Score=60.92 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=30.4
Q ss_pred CCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 18 TNPNPET-NFLISLQSCTKSKDLATAISLYESAL 50 (295)
Q Consensus 18 ~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~ 50 (295)
++..|+. |||+||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4678887 99999999999999999999999984
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.66 E-value=6e-06 Score=83.27 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+...+.+.|+.++|..+|+++.+.+ +.+...+..+...+...+ .+++|..+++.+... .+.+..+|
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~-~~~~~~~~ 604 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG--------QLKKALAILNEAADA-APDSPEAW 604 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC--------CHHHHHHHHHHHHHc-CCCCHHHH
Confidence 34444444444444444444444443322 223333333333222222 266666666666542 23455666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...|...|++++|...|+.+. ... ..+...+..+...|.+.|+.++|.. ...+..+...+...
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLL-ALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 666666666666666666666665 332 2234455566666666666666665 11255556666666
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
|++++|..+++.+...
T Consensus 683 ~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQ 698 (899)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 6666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-08 Score=57.82 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
+|||+||++|++.|++++|.++|++|. ..|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~-~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML-ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCC
Confidence 489999999999999999999999999 99999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-06 Score=82.36 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
.++|.+.++.+.+.. +.+..+++.+...|...|+.++|..+|+++. ... .++...++.+...+.+.|+ .+|..
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV-KKA-PDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 444555555444422 2344555555555555555555555555555 333 2344455555555555555 44444
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHH
Q 048764 159 ---------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 203 (295)
Q Consensus 159 ---------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~ 203 (295)
...+..+-..+...|++++|..+++++.+.+-. ++.++..+...
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 880 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA 880 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 111344555566666677777777666664422 44444333333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-07 Score=56.29 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL 58 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~ 58 (295)
+||++|.+|++.|++++|.++|++|++.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=64.97 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
|=...|..|...+++.....+|+.+++.|+ .|++.+|+.+|....+...+...-+..+-..+.+|++|...+++||..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445578888999999999999999999999 9999999999994444443333334457788999999999999999999
Q ss_pred HHHHHHHHHc
Q 048764 104 VTSVARLAAS 113 (295)
Q Consensus 104 y~~li~~~~~ 113 (295)
||.+|..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-07 Score=55.69 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
.|||++|++|++.|+++.|+++|++|+ ..|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~-~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK-EQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC
Confidence 699999999999999999999999999 999998
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.3e-05 Score=62.36 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+...|...|++++|...|+++.+.. +.+...+..+...+...+. +++|.+.|++..+.. +.+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~ 102 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGE--------LEKAEDSFRRALTLN-PNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CCCHHHH
Confidence 77888899999999999999999987653 3345666666665554442 999999999988754 3456788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
..+...+...|++++|..+|+... .....| ....+..+-..+...|+.++|.. ...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAI-EDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-hccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 888999999999999999999998 533223 33456677788899999999988 1226677788889
Q ss_pred cCCHHHHHHHHHHHHHc
Q 048764 172 TGRVEKVYQYLQKLRST 188 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~~ 188 (295)
.|++++|..++.+....
T Consensus 182 ~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT 198 (234)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998876
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-07 Score=88.21 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh-HHHHHHHHHhccccCCcccchhHHHHHHHhcCCc
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE-TGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGG 229 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~-t~~~l~~~~~~~~~g~~~~~~~~v~~~~~~~g~~ 229 (295)
|.+++++-..+|+.+-|..++.+|++.|....+. .|.+|.. . +...-.+.|.+.+...|.-
T Consensus 207 l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~----~~~q~~e~vlrgmqe~gv~ 268 (1088)
T KOG4318|consen 207 LHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---I----NAAQVFEFVLRGMQEKGVQ 268 (1088)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---C----ccchHHHHHHHHHHHhcCC
Confidence 7888888888999999999999999999888775 4555422 0 1111234566666666543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.1e-07 Score=53.06 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRL 56 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p 56 (295)
+||++|.+|++.|+++.|+.+|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999988
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=85.64 Aligned_cols=170 Identities=12% Similarity=0.044 Sum_probs=109.3
Q ss_pred hcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------------CCCHHhHHHHHHHHHc
Q 048764 16 RKTNPNPET-NFLISLQSCTKSKDLATAISLYESALSLNF------------------------RLSLHHFNALLYLCSN 70 (295)
Q Consensus 16 ~~~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~------------------------~pd~~ty~~ll~~~~~ 70 (295)
...+.-|+. ||.++|.-||..|+++.|- +|..|+-... .|...||+.|+.+|+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~ 95 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRI 95 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHh
Confidence 455677776 9999999999999999998 7777753322 4556677777777766
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHh----CCC-----------------CCCHHHHHHHHHHHHcCCCHHHHHHHH-----
Q 048764 71 SATDPSLKDSALRHGFRVFDQMLS----NNV-----------------IPNEALVTSVARLAASKKDSDYAFELI----- 124 (295)
Q Consensus 71 ~~~~~~~~~~~~~~a~~lf~~M~~----~g~-----------------~pd~~ty~~li~~~~~~g~~~~A~~l~----- 124 (295)
.++-. .++...+.+..+.. .|+ .||..+ +|....-.|.++.++.++
T Consensus 96 hGDli-----~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 96 HGDLI-----LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred ccchH-----HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCc
Confidence 54210 13334432222211 232 233322 222222233333333332
Q ss_pred -----------H-------------HhhhhcCC-CCCcccHHHHHHHHHhcCCHHHhhc---HH----------HHHHHH
Q 048764 125 -----------K-------------RMNNEFNV-VPRLRTYDPALFCFCENLEAQKAYE---EQ----------EITALL 166 (295)
Q Consensus 125 -----------~-------------~M~~~~gi-~P~~~ty~~ll~~~~~~g~~~~A~~---e~----------~y~~ll 166 (295)
+ .|. +.+. .|+..+|.+++++-.-+|+++.|.. ++ .|-.||
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~~c-ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLNMC-KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHHHH-HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 1 122 2222 4999999999999999999999988 22 256665
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcccCCChhHHH
Q 048764 167 KVSAGTGRVEKVYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 198 (295)
-+ .++..-+..+++.|++.|+.|+.+|+.
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 55 888889999999999999999999874
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.8e-07 Score=51.03 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNV 133 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi 133 (295)
+|||+||++|++.|++++|.++|++|. +.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~-~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR-ERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh-HCcC
Confidence 489999999999999999999999999 8775
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00025 Score=59.39 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~~t 103 (295)
.+..+...|...|++++|...|++..+.. +.+...+..+-..+...+. +++|...|+....... +.+...
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~ 137 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGK--------YEQAMQQFEQAIEDPLYPQPARS 137 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhccccccchHH
Confidence 77888889999999999999999988764 3344555555554444332 9999999999987432 234556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
+..+...+...|++++|...|++.. ... ..+...+..+...+...|+.++|.. ...+..+...+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRAL-QID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7778888999999999999999987 543 2245578888899999999999987 1225566777778
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.|+.++|..+.+.+..
T Consensus 216 ~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 216 LGDVAAAQRYGAQLQK 231 (234)
T ss_pred HhhHHHHHHHHHHHHh
Confidence 8999999888887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-06 Score=49.02 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF 54 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~ 54 (295)
|||++|++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999999885
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-05 Score=72.14 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=104.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 23 ETNFLISLQSCTKSKDLATAISLYESALSL--NFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 23 ~~t~~~li~~~~~~g~~~~A~~lf~~m~~~--g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
......+++.+....+++.+..++...+.. ....-..|..++|+.|-..+. .+.++.++..=...|+-||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~--------~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGA--------EDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCC--------HHHHHHHHhChhhcccCCC
Confidence 348888999999999999999999998866 333334566799998877763 8999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCEN 150 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~ 150 (295)
..|||.||+.+.+.|++..|.+++.+|. ..+.-.+..|+.-.+.+|.+-
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~-lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMM-LQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHH-HhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999 888888889999999988877
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00068 Score=67.40 Aligned_cols=119 Identities=9% Similarity=-0.018 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+...|++++|...+..+....-.+ ...+..++.+...++ +++|..+++.+......++...+
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~~l~~~g~---------~~eA~~~~~~~l~~~~~~~~~~~ 215 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCLSFLNKSR---------LPEDHDLARALLPFFALERQESA 215 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHcCC---------HHHHHHHHHHHHhcCCCcchhHH
Confidence 55555666666666666666666554332111 122222222333333 56666666665554333344444
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQK 155 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~ 155 (295)
..+...+...|++++|...|+... ... ..+...+..+-..|...|+.++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al-~~~-p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESAL-ARG-LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHcCCchh
Confidence 444555556666666666666655 332 1123334445555555555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=58.47 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=65.7
Q ss_pred HHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHhhhhc
Q 048764 62 NALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNEALVTSVARLAASKK--------DSDYAFELIKRMNNEF 131 (295)
Q Consensus 62 ~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~~ty~~li~~~~~~g--------~~~~A~~l~~~M~~~~ 131 (295)
..-|. .+..++ +.....+|+.++..|+ .|++.+||.++++.++.. ++-..+.+++.|. ..
T Consensus 29 i~~I~~~~~~~d---------~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~ 98 (120)
T PF08579_consen 29 IDNINSCFENED---------YNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SN 98 (120)
T ss_pred HHHHHHHHhhcc---------hHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-Hh
Confidence 33455 556655 9999999999999999 999999999999998742 3446788999999 99
Q ss_pred CCCCCcccHHHHHHHHHh
Q 048764 132 NVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 132 gi~P~~~ty~~ll~~~~~ 149 (295)
+++|+..||+.+|..+.+
T Consensus 99 ~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 99 KLKPNDETYNIVLGSLLK 116 (120)
T ss_pred ccCCcHHHHHHHHHHHHH
Confidence 999999999999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-05 Score=64.52 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=81.4
Q ss_pred CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------------CCHH
Q 048764 55 RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK----------------KDSD 118 (295)
Q Consensus 55 ~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~----------------g~~~ 118 (295)
.-|..+|..+|..+..... .+.|+++-....+..|.+.|+.-|..+|+.||+.+=+. .+-+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~---~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDV---RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred cccHHHHHHHHHHHHhcCC---CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 5577889999996655431 45678999999999999999999999999999988762 2347
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 119 YAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 119 ~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
-|++++++|. ..||.||..|+..|++.|.+.+..-..
T Consensus 121 c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p~~K 157 (228)
T PF06239_consen 121 CAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHPMKK 157 (228)
T ss_pred HHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHHHHH
Confidence 7899999999 999999999999999998887765443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=61.23 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCC--------cchHHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKS-----KDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPS--------LKDSALRHGFRVFDQ 91 (295)
Q Consensus 25 t~~~li~~~~~~-----g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~--------~~~~~~~~a~~lf~~ 91 (295)
+|..+|+.|.+. |.++=....+..|.+-|+.-|..+|+.||+.+=++...+. -...+.+-|.+|+++
T Consensus 49 ~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~q 128 (228)
T PF06239_consen 49 TFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQ 128 (228)
T ss_pred HHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHH
Confidence 888899999865 6788888889999999999999999999998877775331 122336779999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCH
Q 048764 92 MLSNNVIPNEALVTSVARLAASKKDS 117 (295)
Q Consensus 92 M~~~g~~pd~~ty~~li~~~~~~g~~ 117 (295)
|...||.||..|+..|++.+++.+.+
T Consensus 129 ME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 129 MENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999998865
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.1e-05 Score=68.52 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc-
Q 048764 82 LRHGFRVFDQMLSN-NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~-g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~- 158 (295)
++++..+++..... ..++|...|..+...+.+.|+.++|++++++.. .. .|+ ....+.++..+...|+.+++..
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al-~~--~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL-EL--DPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH-HH---TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 55555555554331 223444455555555555555555555555544 22 233 3334445555555555544333
Q ss_pred -------HH---H-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -------EQ---E-ITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -------e~---~-y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.+ . +..+-.++...|+.++|+.++.+...
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 00 0 34444555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00026 Score=62.62 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN-FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ 102 (295)
.+..+|..+.+.++++++..+++.+.... .+.|...|..+-..+.+.+ ..++|.++|++..+. .| |..
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G--------~~~~A~~~~~~al~~--~P~~~~ 181 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG--------DPDKALRDYRKALEL--DPDDPD 181 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHH---TT-HH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHc--CCCCHH
Confidence 77888999999999999999999987543 4556677777777666655 399999999999874 35 578
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH-HHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE-ITALLKVSA 170 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~-y~~ll~~~~ 170 (295)
..+.++..+...|+.+++.+++.... ... ..|...+..+-.+|...|+.++|+. .+. ...+-+++.
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~-~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLL-KAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH-HH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHH-HHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999987 443 4566677899999999999999999 122 567778899
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048764 171 GTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~ 187 (295)
..|+.++|..+..+...
T Consensus 260 ~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 260 QAGRKDEALRLRRQALR 276 (280)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 99999999998877543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.002 Score=63.57 Aligned_cols=150 Identities=7% Similarity=-0.044 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|+.+-..+...|++++|+..|++..+. .|+ ...|..+-..+...+. +++|...|+...+.. +-+..+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~--------~~eA~~~~~~al~~~-p~~~~~ 401 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGD--------PDKAEEDFDKALKLN-SEDPDI 401 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhC-CCCHHH
Confidence 6677777777889999999999887764 343 4455555554444332 889999999887643 345678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
|..+...|...|++++|...|++.. .. .|+ ...|..+-..+.+.|+.++|.. ...|+.+-..+.
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal-~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSI-DL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 8888888889999999999998877 43 354 4556667778888899888888 122677778888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048764 171 GTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~ 188 (295)
..|++++|...+++-...
T Consensus 479 ~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HccCHHHHHHHHHHHHhc
Confidence 899999999999887664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.002 Score=64.03 Aligned_cols=46 Identities=11% Similarity=-0.055 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+++|...|+...+.. +.+...+..+...+...|++++|...++.+.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 555555555554421 1223444555555555555555555555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0056 Score=60.45 Aligned_cols=165 Identities=10% Similarity=0.016 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|+++.+.. +-+...|..+-.++...+. +++|...|++..+.. +.+...|
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGE--------FAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-ccCHHHH
Confidence 77788888889999999999999987653 3455667776665544442 999999999987743 2356777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------HHH-----------HHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------EQE-----------ITA 164 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e~~-----------y~~ 164 (295)
..+...+.+.|++++|+.+|+... .. .|+ ...|+.+-..+...|+.++|.. .+. ++.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al-~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCK-KN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 888888999999999999999887 43 354 5678888888999999999987 111 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcccCCChh-HHHHHHHHH
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE-TGKIIEDWF 204 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~-t~~~l~~~~ 204 (295)
.+..+...|++++|..++.+.... .|+.. .+..+...+
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 222334468999999999986653 35443 344444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0061 Score=63.07 Aligned_cols=149 Identities=10% Similarity=0.031 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.+..+...+.+.|++++|...|++..+.. +.+...+..+... ...++ +++|...|++..+. .|+...
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr---------~~eAl~~~~~AL~l--~P~~~a 611 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ---------PELALNDLTRSLNI--APSANA 611 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHh--CCCHHH
Confidence 34444455566666666666666665543 1121222221111 11233 78888888877653 366778
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSA 170 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~ 170 (295)
|..+-..+.+.|++++|...|+... .. .|+.. .++.+-..+...|+.++|.. .| .+..+-.++.
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL-~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAAL-EL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888888888888888888888877 43 45544 44555557788888888876 11 2566777778
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048764 171 GTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~ 188 (295)
..|++++|...+++....
T Consensus 689 ~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 689 RLDDMAATQHYARLVIDD 706 (987)
T ss_pred HCCCHHHHHHHHHHHHhc
Confidence 888888888888887653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0083 Score=56.02 Aligned_cols=165 Identities=9% Similarity=-0.030 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL-------HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.+..+...|.+.|++++|+.++..+.+.+..++. .+|..++. .-...+ .+...++++.+...
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~---------~~~l~~~w~~lp~~- 258 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG---------SEGLKRWWKNQSRK- 258 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC---------HHHHHHHHHhCCHH-
Confidence 7778888888889999999999888877754322 12333333 222222 45556666665332
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH-HHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE-ITA 164 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~-y~~ 164 (295)
.+.+......+.+++...|+.++|..++++.. +. .||. -..++.+....++.+++.. .+. +.+
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l-~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGL-KR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34578889999999999999999999999887 53 4444 2234555556788888887 222 667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
+=..+.+.+++++|.+.|+.... ..|+..++..+...+..
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDR 373 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Confidence 77889999999999999999987 46888887777666643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0064 Score=59.30 Aligned_cols=137 Identities=10% Similarity=-0.003 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK 115 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g 115 (295)
.+++++|...+++..+.. +-+...+..+-.++...+. +++|...|++..+.+ +.+...|..+-..|...|
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE--------YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAG 386 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 344556666665555432 2233333333332222221 555666666555432 122344555555555566
Q ss_pred CHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhhc------------HHH-HHHHHHHHHhcCCHHHHHHH
Q 048764 116 DSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAYE------------EQE-ITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~~------------e~~-y~~ll~~~~~~g~~~~a~~l 181 (295)
++++|...|+... .. .|+.. .+..++..+...|+.++|.. .+. +..+-.++...|+.++|...
T Consensus 387 ~~~eAi~~~~~Al-~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 387 QLEEALQTINECL-KL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred CHHHHHHHHHHHH-hc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666554 22 23322 12222333444555555544 011 23333344455666666665
Q ss_pred HHHH
Q 048764 182 LQKL 185 (295)
Q Consensus 182 l~~m 185 (295)
+.++
T Consensus 464 ~~~~ 467 (553)
T PRK12370 464 TKEI 467 (553)
T ss_pred HHHh
Confidence 5554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0099 Score=57.98 Aligned_cols=149 Identities=10% Similarity=0.023 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|...|+++.+.+ +-+...+..+-..+...+. +++|...|+...+.... +...+
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~--------~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQ--------LEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCC-ChhhH
Confidence 67777677888999999999999988764 3344555555555544442 99999999998875432 22233
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc-HHHHHHHHHhcCCHHHhhc--------HHH----HHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT-YDPALFCFCENLEAQKAYE--------EQE----ITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t-y~~ll~~~~~~g~~~~A~~--------e~~----y~~ll~~~~~ 171 (295)
..+...+...|++++|...+++.. ... .|+... +..+-.+|...|+.++|.. .++ .+.|-..++.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l-~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELR-SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH-Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 344445667899999999999887 443 354443 5666677888999999988 111 3445555666
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.| ++|...++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 488 NS--ERALPTIREFLE 501 (553)
T ss_pred cH--HHHHHHHHHHHH
Confidence 66 578887777655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.021 Score=53.29 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=124.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 20 ~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
..+..-|...|. +...|++++|+..++++... .||...|..+.. .+..... ..+|.+.|+.++.. .
T Consensus 304 ~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk--------~~~A~e~~~kal~l--~ 370 (484)
T COG4783 304 GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANK--------AKEAIERLKKALAL--D 370 (484)
T ss_pred cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhc--C
Confidence 444558888887 45678999999999998765 678788888877 5554442 99999999999874 4
Q ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHH
Q 048764 99 PN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEK 177 (295)
Q Consensus 99 pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~ 177 (295)
|+ ....-.+-.+|.+.|++.+|..+++.-. . ..+-|...|..|-.+|...|+..++ ..+.-.++...|++++
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~-~-~~p~dp~~w~~LAqay~~~g~~~~a-----~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYL-F-NDPEDPNGWDLLAQAYAELGNRAEA-----LLARAEGYALAGRLEQ 443 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHh-h-cCCCCchHHHHHHHHHHHhCchHHH-----HHHHHHHHHhCCCHHH
Confidence 66 5566677789999999999999999987 3 4467788999999999999999988 4555566788999999
Q ss_pred HHHHHHHHHHcccCCChhHHH
Q 048764 178 VYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 178 a~~ll~~m~~~~~~p~~~t~~ 198 (295)
|..++..-++.. .++..+|.
T Consensus 444 A~~~l~~A~~~~-~~~~~~~a 463 (484)
T COG4783 444 AIIFLMRASQQV-KLGFPDWA 463 (484)
T ss_pred HHHHHHHHHHhc-cCCcHHHH
Confidence 999999887653 44555543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.022 Score=59.08 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=100.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 33 CTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 33 ~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
+.+.|++++|...|+++... +|+...+..+.. +...++ .++|...|+...+.+ +++...+..+...+
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd---------~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN---------GAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC---------HHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 35788888888888876543 333333434434 333444 888888888887754 23333333443444
Q ss_pred HcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------H----HHHHHHHHHHHhcCCHHHHH
Q 048764 112 ASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------E----QEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e----~~y~~ll~~~~~~g~~~~a~ 179 (295)
...|++++|...|++.. .. .|+...|..+-..+.+.|+.++|.. . ..++.+-..+...|+.++|.
T Consensus 587 ~~~Gr~~eAl~~~~~AL-~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSL-NI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHH-Hh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45689999999998877 43 4777788888889999999999888 1 12566667788899999999
Q ss_pred HHHHHHHHcccCCChh
Q 048764 180 QYLQKLRSTVRCVNEE 195 (295)
Q Consensus 180 ~ll~~m~~~~~~p~~~ 195 (295)
.++.+..+. .|+..
T Consensus 664 ~~l~~AL~l--~P~~~ 677 (987)
T PRK09782 664 EMLERAHKG--LPDDP 677 (987)
T ss_pred HHHHHHHHh--CCCCH
Confidence 999987663 56543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0027 Score=59.35 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=81.2
Q ss_pred HHHHHH---hcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHH
Q 048764 45 LYESAL---SLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN--NVIPNEALVTSVARLAASKKDSDY 119 (295)
Q Consensus 45 lf~~m~---~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~--g~~pd~~ty~~li~~~~~~g~~~~ 119 (295)
++..|. ..+.+.+......+++.|.... +++.+..++-..... ....-..|..++|+.|...|..+.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~--------~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~ 121 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKD--------DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDE 121 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHh--------HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHH
Confidence 455543 3456778888888898777766 388999888887664 222222345699999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 120 AFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 120 A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++++++.=. .+||-||..|||.||+.+.+.|+...|.+
T Consensus 122 ~l~~L~n~~-~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 122 LLELLKNRL-QYGIFPDNFSFNLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred HHHHHhChh-hcccCCChhhHHHHHHHHhhcccHHHHHH
Confidence 999999988 99999999998888887777777666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.015 Score=61.61 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------H----HHHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------E----QEITAL 165 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e----~~y~~l 165 (295)
+++...+..+-..+.+.|++++|++.|+... ... ..+...+..+...|...|+.++|.. . ..+..+
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al-~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l 677 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVL-TRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV 677 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 4455667778888888999999999999887 543 2345678888889999999999987 1 114455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048764 166 LKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 166 l~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
-.++...|+.++|..+++++...
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhh
Confidence 56677899999999999998764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.031 Score=56.69 Aligned_cols=163 Identities=11% Similarity=-0.029 Sum_probs=112.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--------
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRL---SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-------- 97 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-------- 97 (295)
+-..|...|++++|+.+|+++....-.. ....+..|..++...+ .+++|..+++.+....-
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g--------~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE--------NYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc--------cHHHHHHHHHHHhhcCCceEeecCC
Confidence 4557777888888888888776432110 1223444444333333 39999999999987421
Q ss_pred ---CCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HHH--
Q 048764 98 ---IPN---EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQE-- 161 (295)
Q Consensus 98 ---~pd---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~~-- 161 (295)
.|| ...+..+...+...|++++|+++|+++. ... .-+...+..+...+...|+.++|.. .|+
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al-~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA-YNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 234 2355677788889999999999999998 442 3345567788888899999999998 222
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHH
Q 048764 162 --ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 203 (295)
Q Consensus 162 --y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~ 203 (295)
+..+...+...|++++|..+++++.. ..|+......+.+.
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34444567789999999999999987 46776655554433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.03 Score=52.24 Aligned_cols=152 Identities=9% Similarity=-0.016 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH--HHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALL--YLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll--~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
..|-..-....+.|+++.|...|.++.+ ..|+...+..+. ..+...+ +.+.|...++.+.+.. +-+.
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g--------~~~~Al~~l~~~~~~~-P~~~ 187 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARN--------ENHAARHGVDKLLEVA-PRHP 187 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CCCH
Confidence 3444444555788889999998888865 355554443222 2333333 2889999999987755 3457
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-------ccHHHHHHHHHhcCCHHHhhc------------HHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-------RTYDPALFCFCENLEAQKAYE------------EQEI 162 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-------~ty~~ll~~~~~~g~~~~A~~------------e~~y 162 (295)
..+..+...|.+.|++++|.+++..+. +.+..++. .+|..++.......+.+.... .+-.
T Consensus 188 ~al~ll~~~~~~~gdw~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~ 266 (398)
T PRK10747 188 EVLRLAEQAYIRTGAWSSLLDILPSMA-KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQ 266 (398)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHH
Confidence 788888899999999999999999998 66544322 233333333333322222211 1125
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.++...+...|+.++|..++.+...
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6677778888888888888887766
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.073 Score=47.55 Aligned_cols=113 Identities=16% Similarity=0.309 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH-HHH-------
Q 048764 77 LKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF-CFC------- 148 (295)
Q Consensus 77 ~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~-~~~------- 148 (295)
...|-+++|..+|..+...|. .-+...-.|+..|-+..++++|+++-.+.. +.+-. +|+.-|. .||
T Consensus 118 m~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q----~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLV-KLGGQ----TYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCc----cchhHHHHHHHHHHHHHh
Confidence 355668888888888876543 334556677888888888888888888777 44322 3333332 222
Q ss_pred hcCCHHHhhc------------------------------------------HHH-----HHHHHHHHHhcCCHHHHHHH
Q 048764 149 ENLEAQKAYE------------------------------------------EQE-----ITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 149 ~~g~~~~A~~------------------------------------------e~~-----y~~ll~~~~~~g~~~~a~~l 181 (295)
-..+++.|.. .++ ...|..+|...|+.++...+
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 2344444444 112 47788899999999999999
Q ss_pred HHHHHHcccCCChh
Q 048764 182 LQKLRSTVRCVNEE 195 (295)
Q Consensus 182 l~~m~~~~~~p~~~ 195 (295)
+.++.+....++..
T Consensus 272 L~~~~~~~~g~~~~ 285 (389)
T COG2956 272 LRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHccCCccHH
Confidence 99988776665554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.021 Score=53.54 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-H----HHcCCCCCCcchHHHHHHHHHHHHHHhCCC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-L----CSNSATDPSLKDSALRHGFRVFDQMLSNNV-- 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~----~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-- 97 (295)
.+..+...+.+.|++++|..++..+.+.++.++ ..+..+-. + ...+. .+.+...+..+.+...
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~---------~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAM---------ADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHH---------HhcCHHHHHHHHHHCCHH
Confidence 666777777777777777777777777764322 22221111 1 11111 2222334444443221
Q ss_pred -CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH-HHHHH--HHhcCCHHHhhc-----------HH--
Q 048764 98 -IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD-PALFC--FCENLEAQKAYE-----------EQ-- 160 (295)
Q Consensus 98 -~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~-~ll~~--~~~~g~~~~A~~-----------e~-- 160 (295)
+.+...+..+...+...|+.+.|.+++++.. +. .||..... .++.. ....++.+.+.. .+
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l-~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~ 335 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDGL-KK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC 335 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH
Confidence 1378899999999999999999999999988 43 35554311 13332 334566655555 33
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHh
Q 048764 161 E-ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 205 (295)
Q Consensus 161 ~-y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~ 205 (295)
. ..++=..+.+.|++++|.+.|+........|++..+..+-..+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 2 23556668889999999999996555556888888777766663
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.016 Score=55.46 Aligned_cols=163 Identities=14% Similarity=0.124 Sum_probs=114.4
Q ss_pred cCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHH
Q 048764 17 KTNPNPET--NFLISLQSCTKSKDLATAISLYESALSL-----N-FRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFR 87 (295)
Q Consensus 17 ~~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-----g-~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~ 87 (295)
.....|.. +...+-..|...|+++.|..+|....+. | ..|.+.+.-..+. ++...+ .+.+|..
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--------k~~eAv~ 262 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--------KYDEAVN 262 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--------cHHHHHH
Confidence 34445554 7788999999999999999999987654 2 2344443333233 555444 2888888
Q ss_pred HHHHHHh-----CCC-CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCC-CCCccc-HHHHHHHHHhcCCHH
Q 048764 88 VFDQMLS-----NNV-IP-NEALVTSVARLAASKKDSDYAFELIKRMNN----EFNV-VPRLRT-YDPALFCFCENLEAQ 154 (295)
Q Consensus 88 lf~~M~~-----~g~-~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi-~P~~~t-y~~ll~~~~~~g~~~ 154 (295)
+|+++.. .|- .| -..|++.|-.+|.+.|++++|..+++.-.+ ..|. .|.+.+ ++-+...|+..+.++
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 8888766 221 22 245677788899999999999888876432 1222 234433 556677788889999
Q ss_pred Hhhc--------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 155 KAYE--------------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 155 ~A~~--------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.|.. ...|+.|=..|-..|++++|++++++...
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9888 22388888899999999999999998644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.022 Score=57.87 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=102.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 048764 22 PETNFLISLQSCTKSKDLATAISLYESALSLNFRLSL--HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP 99 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p 99 (295)
|+..|...|. ..+.|+++.|+..|.+..+.. |+. ..+ -++.++...+. .++|+..++... ...+.
T Consensus 34 ~~~~y~~aii-~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~--------~~~A~~~~eka~-~p~n~ 100 (822)
T PRK14574 34 ADTQYDSLII-RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGR--------DQEVIDVYERYQ-SSMNI 100 (822)
T ss_pred hhHHHHHHHH-HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCC--------cHHHHHHHHHhc-cCCCC
Confidence 3345666555 567899999999999887653 332 233 66664444342 788998888877 22233
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------H---HHHHHHHH
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------E---QEITALLK 167 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e---~~y~~ll~ 167 (295)
+.....++...|...|++++|+++|+++. ... |+ ...+..++..+...++.++|+. . ..|-.++.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL-~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay 177 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSL-KKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY 177 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 44445555668888899999999999988 443 33 3445577788888899988888 1 12433333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 168 VSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 168 ~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.+...++..+|++.++++.+. .|+..
T Consensus 178 L~~~~~~~~~AL~~~ekll~~--~P~n~ 203 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRL--APTSE 203 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHh--CCCCH
Confidence 333355665688888888775 46543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.059 Score=46.07 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC-C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL---HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVI-P 99 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~---~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~-p 99 (295)
.+-.+...+.+.|+++.|...|+++.... +.+. .++..+-. +...++ +++|...|+++.+..-. |
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~---------~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGD---------YAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHCcCCC
Confidence 66667777899999999999999987643 2222 23334434 444455 99999999999874322 2
Q ss_pred CH-HHHHHHHHHHHcC--------CCHHHHHHHHHHhhhhcCCCCCc
Q 048764 100 NE-ALVTSVARLAASK--------KDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 100 d~-~ty~~li~~~~~~--------g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
.. .++..+-..+... |+++.|.+.|+... .. .|+.
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~--~p~~ 148 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI-RR--YPNS 148 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH-HH--CCCC
Confidence 21 1333333444433 78899999999988 43 3554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.01 Score=55.07 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
--.+++..+...++++.|+.+|+++.+.. |++. ..|..++...+. -.+|.+++++.... .+-|....
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~--------E~~AI~ll~~aL~~-~p~d~~LL 237 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNE--------EVEAIRLLNEALKE-NPQDSELL 237 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCc--------HHHHHHHHHHHHHh-CCCCHHHH
Confidence 33445555666677777777777776554 4432 224443333332 45666666666542 22345555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~~ 158 (295)
..-.+.+.+.++++.|+.+.+++. .+.|+.. +|..|..+|...|+.+.|+.
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 555556666777777777777766 3356554 66666666666666666544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.031 Score=53.49 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=111.9
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHh---c--C-CCCCHHhHHHHHH-HH-HcCCCCCCcchHHHHHHHHH
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALS---L--N-FRLSLHHFNALLY-LC-SNSATDPSLKDSALRHGFRV 88 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~---~--g-~~pd~~ty~~ll~-~~-~~~~~~~~~~~~~~~~a~~l 88 (295)
...|.. +++.|=..|++.|++++|...++...+ . | ..|.+.+..+-+. .| ..+. +++|..+
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~---------~Eea~~l 347 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE---------YEEAKKL 347 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc---------hhHHHHH
Confidence 344444 888888899999999999888886542 2 2 3455555555444 44 4444 7777777
Q ss_pred HHHHHh---CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hc-C-CCCC-cccHHHHHHHHHhcCCHHH
Q 048764 89 FDQMLS---NNVIPN----EALVTSVARLAASKKDSDYAFELIKRMNN---EF-N-VVPR-LRTYDPALFCFCENLEAQK 155 (295)
Q Consensus 89 f~~M~~---~g~~pd----~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~-g-i~P~-~~ty~~ll~~~~~~g~~~~ 155 (295)
+..-.+ .-..++ ..+|+.|-..|-+.|++++|.++|++... .. | ..+. -..++-|-..|.+.+....
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 775433 222333 35799999999999999999999998753 11 1 1222 3456777778888887776
Q ss_pred hhc-------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 156 AYE-------------------EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 156 A~~-------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
|.. .-+|..|...|.+.|+++.|.++.....
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 666 3348889999999999999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.052 Score=57.66 Aligned_cols=148 Identities=10% Similarity=0.030 Sum_probs=109.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSV 107 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~l 107 (295)
.+...+...|+.++|+.+++. .+.+...+..|-..+...+. +++|...|+...+.. +.|...+..+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~--------~~~A~~~y~~al~~~-P~~~~a~~~l 643 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD--------YAAARAAYQRVLTRE-PGNADARLGL 643 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345678889999999999872 34455555555555544442 999999999998853 3468899999
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--------H---H-------HHHHHHHH
Q 048764 108 ARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE--------E---Q-------EITALLKV 168 (295)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~--------e---~-------~y~~ll~~ 168 (295)
+..|...|++++|..+++... . ..|+. ..+..+-.++...|+.++|.. . + .+..+-+.
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll-~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLP-A--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHh-c--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 999999999999999999876 3 34543 445667778889999999988 0 1 13334556
Q ss_pred HHhcCCHHHHHHHHHHHH-HcccCC
Q 048764 169 SAGTGRVEKVYQYLQKLR-STVRCV 192 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~-~~~~~p 192 (295)
+...|+.++|...+++.. ..++.|
T Consensus 721 ~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 788999999999999854 344544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.015 Score=51.71 Aligned_cols=133 Identities=11% Similarity=0.160 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN-FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
+|..+|...-+.+.++.|..+|.+.++.+ ....++...++|..+...+ .+.|.+||+...+. .+.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d---------~~~A~~Ife~glk~-f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD---------PKRARKIFERGLKK-FPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS----------HHHHHHHHHHHHHH-HTT-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHH-CCCCHHH
Confidence 68889999999999999999999998654 4677778888887666666 77899999998764 5567888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
|..-|+-+...++.+.|..+|+... .. + |.... ...-|...|+.=.+.|+++.+..+.+
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i-~~-l-~~~~~------------------~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAI-SS-L-PKEKQ------------------SKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHC-CT-S-SCHHH------------------CHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHH-Hh-c-CchhH------------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999987 43 3 33321 01226777777778888888888888
Q ss_pred HHHHc
Q 048764 184 KLRST 188 (295)
Q Consensus 184 ~m~~~ 188 (295)
++.+.
T Consensus 132 R~~~~ 136 (280)
T PF05843_consen 132 RAEEL 136 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.1 Score=47.40 Aligned_cols=147 Identities=17% Similarity=0.025 Sum_probs=98.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EALVTSVA 108 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li 108 (295)
-..+...|++++|..++++..+.. +-|...++.-+.+...+... +....+.+.+.. .....|+ ...+..+-
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~l~~--~~~~~~~~~~~~~~~a 121 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFS-----GMRDHVARVLPL--WAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccc-----cCchhHHHHHhc--cCcCCCCcHHHHHHHH
Confidence 334567899999999999987653 44444444211122222210 024455555554 2223344 34445566
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------H---H-----HHHHHHHHHHh
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------E---Q-----EITALLKVSAG 171 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e---~-----~y~~ll~~~~~ 171 (295)
..+...|++++|...+++.. ... |+ ...+..+-..|...|+.++|.. . + .|..+-..+..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al-~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRAL-ELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHH-hhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 77888999999999999988 543 54 4566778888999999999988 1 1 13456777889
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.|+.++|..++++...
T Consensus 199 ~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 199 RGDYEAALAIYDTHIA 214 (355)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999854
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.11 Score=52.85 Aligned_cols=148 Identities=12% Similarity=0.065 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
...-.+......|+.++|+.+|.+.... -+.+...+..+-.++...+. +++|..+|++..+.. +.+...+
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQ--------WQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 3334455566789999999999988762 24555567777775555553 899999999987642 3456677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...+...|++++|..++++.. .. .|+...+..+-..+...|+.++|.. ...+..+...+...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l-~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLV-SG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 888889999999999999999987 44 3443337778888889999999988 11245566677788
Q ss_pred CCHHHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKL 185 (295)
Q Consensus 173 g~~~~a~~ll~~m 185 (295)
+..++|+..++..
T Consensus 164 ~~~e~Al~~l~~~ 176 (765)
T PRK10049 164 RLSAPALGAIDDA 176 (765)
T ss_pred CChHHHHHHHHhC
Confidence 8888888777743
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.26 Score=44.00 Aligned_cols=92 Identities=13% Similarity=0.009 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHHH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEALV 104 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ty 104 (295)
|..+=..|.+.|+.++|...|++..+.. +-+...|+.+-..+...+. +++|...|+...+. .| +..+|
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~Al~l--~P~~~~a~ 135 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN--------FDAAYEAFDSVLEL--DPTYNYAY 135 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHh--CCCCHHHH
Confidence 4444444556666666666666655542 2334555555443333332 55666555555542 22 23445
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+...+...|++++|.+.|+.-.
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.15 Score=47.75 Aligned_cols=155 Identities=10% Similarity=-0.005 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--hHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLH--HFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~--ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
.|-..-....+.|+.+.|...|.++.+.. |+.. .--+.-.+. ..++ ++.|...++.+.+.. |-|.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~---------~~~Al~~l~~l~~~~-P~~~ 187 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNE---------LHAARHGVDKLLEMA-PRHK 187 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHhC-CCCH
Confidence 33333455667788888888888876543 3332 222223333 3344 999999999998865 3356
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH-HHHHHH---HhcCCH-------HHhhc---------HHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD-PALFCF---CENLEA-------QKAYE---------EQE 161 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~-~ll~~~---~~~g~~-------~~A~~---------e~~ 161 (295)
..+..+...|...|+++.|.+++.... +.++. +...+. .-+.++ ...+.. ..+.. ..-
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l 265 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIAL 265 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHH
Confidence 788899999999999999999999999 77643 333332 111111 222211 11222 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
+..+...+...|+.++|..++.+.... .|+..
T Consensus 266 ~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~ 297 (409)
T TIGR00540 266 KIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDR 297 (409)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcc
Confidence 677888899999999999999998774 34443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.13 Score=52.33 Aligned_cols=156 Identities=10% Similarity=-0.013 Sum_probs=114.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC-----CCCCHHH
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN-----VIPNEAL 103 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g-----~~pd~~t 103 (295)
.|-+..+.++..++++.|+.|...|.+...++--.+-.+|-... +.++|..+|.+..... .+++...
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~--------~P~kA~~l~~~~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR--------LPEKAAPILSSLYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC--------CcHHHHHHHHHHhhccccccCCCcchHH
Confidence 46678889999999999999999998766788888888665555 2889999999996643 2345555
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcC-------------CCCCccc-HHHHHHHHHhcCCHHHhhc-----------
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFN-------------VVPRLRT-YDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~g-------------i~P~~~t-y~~ll~~~~~~g~~~~A~~----------- 158 (295)
...|.-+|.-.+++++|..+++.+. ..- --||... +..++..+.-.|++.+|.+
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~ 448 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYS-EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA 448 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH-hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7889999999999999999999998 521 1122222 3456777889999999998
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 159 -EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 159 -e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
..-...+=+.+...|...+|+.+++..... .|+..
T Consensus 449 n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~ 484 (822)
T PRK14574 449 NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSL 484 (822)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccH
Confidence 111455666677778888888888554432 55443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.015 Score=56.01 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=117.9
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSLNFRL-SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.|++ ||.++=..|+-.++.+.|+..|+...+- .| ..++|+.+=+ .-.... ++.|..-|..-+.
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee---------~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEE---------FDKAMKSFRKALG-- 483 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHH---------HHhHHHHHHhhhc--
Confidence 3444 9999999999999999999999988653 34 6788888777 444444 8899999987654
Q ss_pred CCCCHHHHHH---HHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------HH----
Q 048764 97 VIPNEALVTS---VARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------EQ---- 160 (295)
Q Consensus 97 ~~pd~~ty~~---li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e~---- 160 (295)
.|...||+ |--.|-+.++++.|.-.|+.-. .|-|. .+.-..+-..+-+.|..|+|+. ++
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 56566665 5667889999999999999876 34454 4445555566678899999988 11
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH-HHHHHHH
Q 048764 161 -EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG-KIIEDWF 204 (295)
Q Consensus 161 -~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~-~~l~~~~ 204 (295)
-|. ....+.-.++.++|+..|+++++ ..|++.+. -++-..|
T Consensus 559 ~~~~-~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 559 CKYH-RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIY 601 (638)
T ss_pred hHHH-HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 132 22334456899999999999988 46877654 3444444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.062 Score=53.62 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=118.1
Q ss_pred CChhhhhcCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCC-------------
Q 048764 10 SKPNKKRKTNPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATD------------- 74 (295)
Q Consensus 10 ~~~~~~~~~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~------------- 74 (295)
++++.+++...+|+. .+.-.-..|++ |++++|..++.+..+.. +.+...|-+|-..+...++.
T Consensus 125 ~~~~~r~~~~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 125 RGRRSRGKSKLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred cCCCCCcccccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 333444444555544 66666777787 99999999999998774 56667888887766655431
Q ss_pred -C------------CcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc---
Q 048764 75 -P------------SLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR--- 138 (295)
Q Consensus 75 -~------------~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~--- 138 (295)
+ +.+.|.+++|.-.|....+.. ++|...+--=+..|-+.|+...|++.|.+|. ... .|...
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-~~~-p~~d~er~ 279 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLL-QLD-PPVDIERI 279 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHH-hhC-CchhHHHH
Confidence 0 124445677777777666543 2444444445566777888888888888877 433 12211
Q ss_pred --cHHHHHHHHHhcCCHHHhhc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 139 --TYDPALFCFCENLEAQKAYE--------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 139 --ty~~ll~~~~~~g~~~~A~~--------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
+--.+++.|...++-+.|.+ .++++.+...+.+...++.|...+..+.....+++++-|
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 22233445555666565555 445888888888888888888888888776666666555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.062 Score=41.49 Aligned_cols=108 Identities=7% Similarity=0.034 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
....+...+.+.|++++|...|+.+...+ +.+...+..+-..+...+ ++++|..+|+.....+ +.+..+|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLK--------EYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcC-CCChHHH
Confidence 45556677888899999999999887754 335555555555443333 2889999999887654 4566777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
-.+-..|...|+++.|...|+... .. .|+...+..+..
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAI-EI--CGENPEYSELKE 126 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hh--ccccchHHHHHH
Confidence 777788889999999999998877 43 477766655444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0093 Score=53.24 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=93.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVAR 109 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~ 109 (295)
..+...|++++|+++++.- -+.......+. ++..++ ++.|.+.|+.|.+.+ .| .+.+-|..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R---------~dlA~k~l~~~~~~~--eD-~~l~qLa~ 171 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNR---------PDLAEKELKNMQQID--ED-SILTQLAE 171 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT----------HHHHHHHHHHHHCCS--CC-HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCC---------HHHHHHHHHHHHhcC--Cc-HHHHHHHH
Confidence 3456679999998888642 34566666777 444454 889999999998742 44 44444444
Q ss_pred HHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HH-HHHHHHHHHHhcC
Q 048764 110 LAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQ-EITALLKVSAGTG 173 (295)
Q Consensus 110 ~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~-~y~~ll~~~~~~g 173 (295)
++.. ...+..|+.+|++|. .. ..++..+.|.+..++...|++++|.. .+ ....++-+....|
T Consensus 172 awv~l~~g~e~~~~A~y~f~El~-~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 172 AWVNLATGGEKYQDAFYIFEELS-DK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHH-CC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCchhHHHHHHHHHHHH-hc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 4443 447899999999987 43 35777888888889999999999988 22 2444555556667
Q ss_pred CH-HHHHHHHHHHHHc
Q 048764 174 RV-EKVYQYLQKLRST 188 (295)
Q Consensus 174 ~~-~~a~~ll~~m~~~ 188 (295)
+. +.+.+++.+|+..
T Consensus 250 k~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 250 KPTEAAERYLSQLKQS 265 (290)
T ss_dssp -TCHHHHHHHHHCHHH
T ss_pred CChhHHHHHHHHHHHh
Confidence 66 6788899998764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.056 Score=42.90 Aligned_cols=110 Identities=12% Similarity=0.024 Sum_probs=80.5
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 19 NPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 19 ~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
...|+. +...-..+.+.|++++|+..|+...... +.+...|..+-..|...+ ++++|...|+...... +
T Consensus 21 ~~~p~~-~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g--------~~~~A~~~y~~Al~l~-p 89 (144)
T PRK15359 21 SVDPET-VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLK--------EYTTAINFYGHALMLD-A 89 (144)
T ss_pred HcCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHhcC-C
Confidence 344554 3345566788999999999999887653 445666666666665555 3999999999998743 3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHH
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDP 142 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ 142 (295)
.+..++..+-.++...|++++|...|+.-. . +.|+...|..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al-~--~~p~~~~~~~ 130 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAI-K--MSYADASWSE 130 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCCChHHHH
Confidence 577888888889999999999999999877 3 4576655543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.082 Score=55.26 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=116.6
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC---HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSL-NFRLS---LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-g~~pd---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
.|++ .|-..|.-..+.++++.|..+++++... +++-. .-.|.+++++-..-+. -+...++|+...+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~--------eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT--------EESLKKVFERACQ 1525 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc--------HHHHHHHHHHHHH
Confidence 4555 8888899999999999999999988643 22221 2466777774333231 5677888888766
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----------------
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------------- 158 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------------- 158 (295)
.. -....|..|..-|.+.+.+++|-++|+.|..+.| -....|...+..+.+..+.+.|..
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 32 2246788888899999999999999999974455 444567777777777777555544
Q ss_pred --------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 159 --------------------------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 159 --------------------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
-.-|+..|+.-.++|+.+.++.+|++....++.|-.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 011788888888899999999999998887776643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.023 Score=49.85 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCC----------CcchHHHHHHHHHH
Q 048764 25 NFLISLQSCTKS-----KDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDP----------SLKDSALRHGFRVF 89 (295)
Q Consensus 25 t~~~li~~~~~~-----g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~----------~~~~~~~~~a~~lf 89 (295)
+|-+.+.-|... +.++-....+..|++-|+.-|..+|+.||+.+-++...+ +.++ -+=+.+++
T Consensus 69 sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q--Q~C~I~vL 146 (406)
T KOG3941|consen 69 SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ--QNCAIKVL 146 (406)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh--hhHHHHHH
Confidence 788888777654 677778888899999999999999999999988888643 1222 34588999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHhh
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSD-YAFELIKRMN 128 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~-~A~~l~~~M~ 128 (295)
++|...||.||--+--.||+++++.+-+- +..++.-=|.
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999987653 3344444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.052 Score=37.46 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
|..+...+...|++++|+.+|+++.+.. +.+...+..+-..+...+ .+++|.+.|+...... +.+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~-~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLG--------KYEEALEDYEKALELD-PDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-CcchhHHH
Confidence 5566677888999999999999887653 223344444444444333 2889999999887754 23446888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh
Q 048764 106 SVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+...+...|+++.|...|....
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 88899999999999999998876
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.41 Score=40.90 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
..--|=-+|.+.|+...|..-+++..+.. +-+.-++.++-.+|..-+ ..+.|.+-|..-.+.. +-|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~G--------e~~~A~e~YrkAlsl~-p~~GdVL 106 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLG--------ENDLADESYRKALSLA-PNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--------ChhhHHHHHHHHHhcC-CCccchh
Confidence 55556678999999999999999998763 334456666666776655 2888999999877633 1345566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhh--hcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNN--EFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~--~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
|.-=--+|..|.+++|...|+.-.. .+|-. ..||.-+--+..+.|+.+.|.. .+....|-+...
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~--s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEP--SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc--chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 6666677899999999999998762 23322 3477777778888999998887 333677888888
Q ss_pred hcCCHHHHHHHHHHHHHcccCCChhHHHH
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVNEETGKI 199 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~ 199 (295)
+.|++-.|..++++....+. ++.+..-+
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L 212 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESLLL 212 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHHHH
Confidence 99999999999999888775 55544433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.18 Score=48.86 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~t 103 (295)
.|+.|-.+.-..|++.+|.+.|.+...-. +--..+.+.|-+.+..-+ .+++|..+|..-.+ +.|. ...
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~--------~~e~A~~ly~~al~--v~p~~aaa 390 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQG--------KIEEATRLYLKALE--VFPEFAAA 390 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc--------cchHHHHHHHHHHh--hChhhhhh
Confidence 67777777777777777777777666432 112344555555555444 38888888887665 4455 456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSA 170 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~ 170 (295)
+|.|-..|-+.|++++|+..+++-. .|+|+- ..|+-+=..|-..|+++.|.+ .| .++.|-..|.
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 8899999999999999999999876 567864 467777778888888888888 22 3678888899
Q ss_pred hcCCHHHHHHHHHHHHHcccCCCh
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
..|++.+|..-++.-.. +.|+.
T Consensus 468 DsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred ccCCcHHHHHHHHHHHc--cCCCC
Confidence 99999999988887543 46654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.42 Score=43.77 Aligned_cols=168 Identities=12% Similarity=0.043 Sum_probs=120.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSL-------HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 23 ~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
....+.....|.+.|++...+.+...|.+.|+--|. .+|+.+|.=+..... .+.-..-+++...
T Consensus 187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~--------~~gL~~~W~~~pr- 257 (400)
T COG3071 187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG--------SEGLKTWWKNQPR- 257 (400)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc--------chHHHHHHHhccH-
Confidence 347888999999999999999999999999865443 688888884444331 3333333443322
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHH---hhc--------HHH-HH
Q 048764 96 NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQK---AYE--------EQE-IT 163 (295)
Q Consensus 96 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~---A~~--------e~~-y~ 163 (295)
..+-+...-.+++.-+...|+.++|.+++.+-. +.+..|+..++ -.+.+-++.+. +.+ .|. +.
T Consensus 258 ~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 258 KLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 233445566678888889999999999999988 88878873332 33444444332 222 222 78
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
+|=..|.+.+.+.+|...|+. .....|+.+++..+...|..
T Consensus 333 tLG~L~~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEA--ALKLRPSASDYAELADALDQ 373 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHH
Confidence 888889999999999999994 45578999999999888843
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.13 Score=40.65 Aligned_cols=93 Identities=17% Similarity=0.078 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH----HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY----LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~----~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
.|..++..+. .++...+...++.+.... +-+.+..-..|. .+..++ +++|...|+........|+
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~---------~~~A~~~l~~~~~~~~d~~ 82 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGD---------YDEAKAALEKALANAPDPE 82 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHhhCCCHH
Confidence 7888888774 888999999999988763 222232222222 333444 9999999999988763333
Q ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 101 E--ALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 101 ~--~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
. ...-.|...+...|++++|+.+++...
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~ 112 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQIP 112 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 2 234446778888999999999997644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.028 Score=50.19 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=80.4
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 28 ISLQSCTKS-KDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 28 ~li~~~~~~-g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
.++..|.+. .+-+.++.-+.+.......++..++..+.. ++...+ .+++|+++++.- .+.-...
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~--------~~~~AL~~l~~~------~~lE~~a 135 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG--------DYEEALKLLHKG------GSLELLA 135 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC--------HHHHHHCCCTTT------TCHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC--------CHHHHHHHHHcc------CcccHHH
Confidence 344455554 445556555555444443333334444443 333333 388888777642 4556666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh--cC--CHHHhhc------------HHHHHHHHHHH
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE--NL--EAQKAYE------------EQEITALLKVS 169 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~--~g--~~~~A~~------------e~~y~~ll~~~ 169 (295)
..|..|.+.+++|.|...++.|. +.+ .| .+-.-|..++.. .| .+.+|+. ....|.+.-++
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~-~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQ-QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH-CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 77888888888888888888888 432 33 333344444443 22 4555655 11256666677
Q ss_pred HhcCCHHHHHHHHHHHH
Q 048764 170 AGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~ 186 (295)
...|++++|.+++.+-.
T Consensus 212 l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHCT-HHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 78888888888888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.13 Score=43.17 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+-..|...|++++|+..|++..+.. +-|...+..+-. ++...+.. ..++|..+|++..+.+. -+..+
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~------~~~~A~~~l~~al~~dP-~~~~a 146 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQH------MTPQTREMIDKALALDA-NEVTA 146 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCC-CChhH
Confidence 88888888999999999999999887654 335556665555 33343310 14789999999887543 35677
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
+..+-..+...|++++|...++.+. ... .|+..-+. +|.+
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL-~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVL-DLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCccHHH-HHHH
Confidence 8888888889999999999999988 444 55554443 3344
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.087 Score=49.00 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=85.9
Q ss_pred HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 59 HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+...+|+.++..... ++.|..+|+++.+.. |+.. ..|++.+...++-.+|.+++++.. ... .-+..
T Consensus 170 yLv~~Ll~~l~~t~~--------~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL-~~~-p~d~~ 235 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQR--------YDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEAL-KEN-PQDSE 235 (395)
T ss_pred HHHHHHHHHHhhccc--------HHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHH-HhC-CCCHH
Confidence 444455565655553 999999999998865 6644 458888888888899999999988 432 22333
Q ss_pred cHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 139 TYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 139 ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
....-...|.+.++.+.|.. -..|..|..+|...|+++.|+-.+..+.-
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 34444556778999999998 12389999999999999999999998754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.17 Score=37.69 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--CCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF--RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV--IPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~--~pd 100 (295)
++-.+...+.+.|++++|...|.++.+..- +.....+..+-..+...+. ++.|...|+......- +..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--------YADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHCCCCCcc
Confidence 455566678889999999999999986531 1112333334444444332 9999999999887431 122
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
..++..+...+.+.|+.++|..++++.. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~ 106 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVI-KRY 106 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHH-HHC
Confidence 4567788888899999999999999998 553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.27 Score=38.86 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 59 HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP--NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
..|..++.....++ ...+...++.+.+..-.- .....-.+-..+...|++++|...|+... ...-.|+
T Consensus 13 ~~y~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~-~~~~d~~ 82 (145)
T PF09976_consen 13 ALYEQALQALQAGD---------PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL-ANAPDPE 82 (145)
T ss_pred HHHHHHHHHHHCCC---------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCHH
Confidence 45666666556555 788888999998753211 11222234467778999999999999998 6653333
Q ss_pred cc--cHHHHHHHHHhcCCHHHhhc----------HH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 137 LR--TYDPALFCFCENLEAQKAYE----------EQ-EITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 137 ~~--ty~~ll~~~~~~g~~~~A~~----------e~-~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
.. ..-.|...+...|+.++|.. .+ .+..+=+.+.+.|+.++|...++.
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22 33345566777888888887 11 134455567788888888877764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.58 Score=41.79 Aligned_cols=138 Identities=10% Similarity=-0.006 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHhcC-CCCCH--HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 048764 37 KDLATAISLYESALSLN-FRLSL--HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS 113 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g-~~pd~--~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~ 113 (295)
+..+.++.-+.++.... ..|+. ..|..+-.++...+. .++|...|++..+.. +.+...|+.+-..+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~--------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL--------RALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34466777888877543 23322 233333333433332 899999999988754 2457899999999999
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------HHH--H-HHHHHHHHhcCCHHHHHHH
Q 048764 114 KKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------EQE--I-TALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 114 ~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e~~--y-~~ll~~~~~~g~~~~a~~l 181 (295)
.|+++.|.+.|+... . +.|+ ..+|..+-..+...|+.++|.. .|. + ...+..+...++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al-~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVL-E--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999987 4 3465 4567777778889999999988 111 2 2222234456789999999
Q ss_pred HHHHH
Q 048764 182 LQKLR 186 (295)
Q Consensus 182 l~~m~ 186 (295)
|.+..
T Consensus 188 l~~~~ 192 (296)
T PRK11189 188 LKQRY 192 (296)
T ss_pred HHHHH
Confidence 97654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.78 Score=41.55 Aligned_cols=155 Identities=11% Similarity=0.016 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCH--HH
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNE--AL 103 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~--~t 103 (295)
..+-..+...|++++|...|++..+.. +.+...+..+-..+...+. +++|...+++.....- .|+. ..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~--------~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR--------FKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC--------HHHHHHHHHhhhhccCCCcchhHHH
Confidence 344457788999999999999998764 4455566666664444442 9999999998876322 2343 34
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCCcccH-H--HHHHHHHhcCCHHHhhc--------HHH-------HH-
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTY-D--PALFCFCENLEAQKAYE--------EQE-------IT- 163 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~ty-~--~ll~~~~~~g~~~~A~~--------e~~-------y~- 163 (295)
|..+...+...|++++|..+|++.. .... .+..... + .++.-+...|....+.. .+. +.
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH
Confidence 6678889999999999999999976 3221 1222111 1 22222333342221111 011 22
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcccC
Q 048764 164 -ALLKVSAGTGRVEKVYQYLQKLRSTVRC 191 (295)
Q Consensus 164 -~ll~~~~~~g~~~~a~~ll~~m~~~~~~ 191 (295)
....++...|+.++|..++..+......
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 5666778889999999999998775433
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.019 Score=50.30 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=75.6
Q ss_pred CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----------------CHH
Q 048764 55 RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK----------------DSD 118 (295)
Q Consensus 55 ~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g----------------~~~ 118 (295)
.-|..+|-..+.-+...+. -+.++++-....++.|.+.||..|..+|+.||+.+-+.. +-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sV---r~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~ 140 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSV---RGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN 140 (406)
T ss_pred cccHHHHHHHHHHHHHhhh---cccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence 4456666666665443320 122358888899999999999999999999999887632 224
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 119 YAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 119 ~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
=++.++++|. ..|+.||-.+-..||++|.+.+..-.-+
T Consensus 141 C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~ 178 (406)
T KOG3941|consen 141 CAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKV 178 (406)
T ss_pred HHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHH
Confidence 4788999999 9999999999999999999988765443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.15 Score=45.68 Aligned_cols=121 Identities=8% Similarity=0.053 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
||--|-..|.+..+...|+.+|.+-.+. .|-.+||-.=+. ...... ..++|.++|+...+.. +-|+-.
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~--------~~~~a~~lYk~vlk~~-~~nvEa 326 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME--------QQEDALQLYKLVLKLH-PINVEA 326 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH--------hHHHHHHHHHHHHhcC-Ccccee
Confidence 5555555555555555555555444332 222233222111 222222 3778888888877643 245666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..++-.+|...++++.|+.++..+. +-|+ -+..-|+.+--+|.-.+++|-++.
T Consensus 327 iAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 327 IACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred eeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 7777788888999999999999998 8885 455566666666667777776655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.13 Score=39.57 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|+.....+ +.+...|..+-..+...|+++.|..+|+... ..+ |+ ..+|..
T Consensus 33 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~--p~~~~~~~~------------------ 90 (135)
T TIGR02552 33 YDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA-ALD--PDDPRPYFH------------------ 90 (135)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC--CCChHHHHH------------------
Confidence 889999999887754 3477888888888889999999999999876 433 43 333322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+-..+...|+.++|...+.+..+
T Consensus 91 ----la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 ----AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred ----HHHHHHHcCCHHHHHHHHHHHHH
Confidence 22345566677777777766555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.17 Score=48.96 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHcCCC-C-------------C------------Cc
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS-LHHFNALLYLCSNSAT-D-------------P------------SL 77 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~ll~~~~~~~~-~-------------~------------~~ 77 (295)
.|+.|=..+-..|++-.|+..|++...-. |+ .-.|-.|=+.++.... + + +-
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 56666666666677777777776665321 11 1223333333333221 0 0 12
Q ss_pred chHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
.+|.++-|...|+.-.+ +.|+ ...||.|-.++-..|++.+|.+.+++-. ... .-...+-+-|-..|...|.++.|
T Consensus 298 eqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL-~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL-RLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred ccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhccchHH
Confidence 45568888888887765 3344 4678888888888888888888887765 322 11233555666666777776666
Q ss_pred hc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 157 YE------------EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 157 ~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.. ...+|.|-..|-..|++++|..-+++-.
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 65 1124555555566666666665555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.95 Score=43.84 Aligned_cols=150 Identities=16% Similarity=0.057 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCC-HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC-C
Q 048764 25 NFLISLQSCTKSK-----DLATAISLYESALSLNFRLS-LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN-N 96 (295)
Q Consensus 25 t~~~li~~~~~~g-----~~~~A~~lf~~m~~~g~~pd-~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~-g 96 (295)
.|...+.+..... +...|..+|++..+. .|| ...|..+.. ........+ .....+..+.+........ .
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~-~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQP-LDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhhhccc
Confidence 8888888755432 377999999999875 343 344444322 112222111 1122355555555554442 2
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVE 176 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~ 176 (295)
.+.+..+|.++--.+...|++++|...|++.. ..+ |+... |..+-..+...|+.+
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~--ps~~a----------------------~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLE--MSWLN----------------------YVLLGKVYELKGDNR 470 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcC--CCHHH----------------------HHHHHHHHHHcCCHH
Confidence 34455778888666777899999999999988 554 65444 455556677788888
Q ss_pred HHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 177 KVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 177 ~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
+|.+.+.+-.+ ..|...||....++.
T Consensus 471 eA~~~~~~A~~--L~P~~pt~~~~~~~~ 496 (517)
T PRK10153 471 LAADAYSTAFN--LRPGENTLYWIENLV 496 (517)
T ss_pred HHHHHHHHHHh--cCCCCchHHHHHhcc
Confidence 88888877544 467777877765544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.15 Score=39.55 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=62.5
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS---------------NNVIPNEALVTSVARLAASKKDSDYAF 121 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~---------------~g~~pd~~ty~~li~~~~~~g~~~~A~ 121 (295)
|..++.++|.++++.+. ++....+.+..-. ....|+..+..+++.+|+..+++..|+
T Consensus 1 de~~~~~ii~al~r~g~--------~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al 72 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQ--------LDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL 72 (126)
T ss_pred ChHHHHHHHHHHhhcCC--------HHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence 34566677775555542 6666666554322 234699999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 122 ELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 122 ~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
.+++.....+++.-+..+|..|++=
T Consensus 73 ~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 73 KLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999988789988888888888874
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.048 Score=36.78 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHH
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL 144 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll 144 (295)
.|.+++|..+|+++..... -|...+-.+...|.+.|++++|..+++.+. .. .|+...|..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~-~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL-KQ--DPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH-GG--GTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH--CcCHHHHHHHH
Confidence 4569999999999987532 377788889999999999999999999998 44 47755665554
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.32 Score=46.34 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH-HHh
Q 048764 17 KTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQ-MLS 94 (295)
Q Consensus 17 ~~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~-M~~ 94 (295)
.....|+-+|...|..--+..-+..|..+|.++++.+..+ .++.++++|.+++..+ ..-|.+||+- |+.
T Consensus 360 ~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD---------~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 360 IEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKD---------KETAFRIFELGLKK 430 (656)
T ss_pred hhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCC---------hhHHHHHHHHHHHh
Confidence 3445555577777777777777777777888777777666 7777777777555555 5567777774 343
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc--ccHHHHHHHHHhcCCHHHhhc
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL--RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~--~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|- +..--+.-++-+..-++=..|..+|+... ..++.|+. ..|..+|.-=+.-|++...+.
T Consensus 431 f~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l-~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 431 FGD--SPEYVLKYLDFLSHLNDDNNARALFERVL-TSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred cCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHH-hccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 322 11223445566666666677777777777 55555543 456666665555565555444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1 Score=39.37 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=76.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVAR 109 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~ 109 (295)
..-|+..+++++|++.... |-..+....|.-|.+ +.. .++-|.+..+.|.+- -+..|.|-|..
T Consensus 115 a~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~l-k~~---------r~d~A~~~lk~mq~i---ded~tLtQLA~ 177 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL----GENLEAAALNVQILL-KMH---------RFDLAEKELKKMQQI---DEDATLTQLAQ 177 (299)
T ss_pred hHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHcc---chHHHHHHHHH
Confidence 3458888999999888765 334444555544442 112 277899999999872 46677776665
Q ss_pred HHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 110 LAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 110 ~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++.+ .+.+..|+-+|++|. . ...|+..+-+....++...|++++|..
T Consensus 178 awv~la~ggek~qdAfyifeE~s-~-k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEELS-E-KTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHHh-c-ccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 5554 667899999999998 3 246888888887777777777777754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.25 Score=39.16 Aligned_cols=88 Identities=7% Similarity=-0.133 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|+...... +.+...|..+-.++...|++++|...|+... .. .|+ ...+
T Consensus 40 ~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~l--~p~~~~a~-------------------- 95 (144)
T PRK15359 40 YSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHAL-ML--DASHPEPV-------------------- 95 (144)
T ss_pred HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc--CCCCcHHH--------------------
Confidence 889999999887644 3577888888888999999999999999888 43 343 3333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
..+-.++...|+.++|...+..... ..|+...+
T Consensus 96 --~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~ 128 (144)
T PRK15359 96 --YQTGVCLKMMGEPGLAREAFQTAIK--MSYADASW 128 (144)
T ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHH
Confidence 3334445566777777777777654 34544333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.6 Score=42.17 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=77.2
Q ss_pred CCCHHHHH--HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhcHHH----------H--
Q 048764 98 IPNEALVT--SVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYEEQE----------I-- 162 (295)
Q Consensus 98 ~pd~~ty~--~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~e~~----------y-- 162 (295)
+|....|+ -+-.-|-..|++++|+++++.-. .. .|.. .-|..--..|-+.|++.+|...++ |
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-EH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYIN 265 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHH
Confidence 35554554 44566778999999999999887 44 4764 457777788889999999999221 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
+-....+.++|++++|..++....+.+..|-.....+=.-||..
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 45667788999999999999999887765655555444455544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.41 Score=44.03 Aligned_cols=104 Identities=9% Similarity=0.062 Sum_probs=76.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARL 110 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~ 110 (295)
..+...|++++|+.+|+++.+.. +-+...|..+-.++...+. +++|...++...... +.+...|..+-.+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~--------~~eAl~~~~~Al~l~-P~~~~a~~~lg~~ 79 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGN--------FTEAVADANKAIELD-PSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 45667899999999999998753 3344555555455544442 999999999988743 2357788888889
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
|...|++++|...|+... . +.|+...+..++.-|
T Consensus 80 ~~~lg~~~eA~~~~~~al-~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGA-S--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHhCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHH
Confidence 999999999999999987 4 457766665555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.36 Score=42.87 Aligned_cols=143 Identities=11% Similarity=0.090 Sum_probs=99.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh-cCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC------------
Q 048764 32 SCTKSKDLATAISLYESALS-LNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI------------ 98 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~-~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~------------ 98 (295)
...+.|+.+.|+.-|+...+ .|..| ...||.-|.-++++. .+.|++...++.++|+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~q---------yasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSRQ---------YASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhhh---------HHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 34588999999999998775 55665 478999999888888 89999999999998862
Q ss_pred -CCHH--------HHHHHHHH-------HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHH--HHHHhcCCHHHhhc--
Q 048764 99 -PNEA--------LVTSVARL-------AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL--FCFCENLEAQKAYE-- 158 (295)
Q Consensus 99 -pd~~--------ty~~li~~-------~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll--~~~~~~g~~~~A~~-- 158 (295)
||+. .-++++.+ +.+.|+.+.|.+-+-.|.....-..|.+|...+. ++=++-++-..-+.
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFL 302 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHH
Confidence 4432 23344444 3457899999999999975444455666655432 22222222111111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
..+|..+|-.||+..-++-|-+++.+
T Consensus 303 L~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 303 LQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45688888899999998888888776
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.23 Score=38.52 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhcCCH
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----EQEITALLKVSAGTGRV 175 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~g~~ 175 (295)
|+.++.++|-++++.|+++....+++. ..||.++...= .+++...-. .....+++.+|+..|++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~---~WgI~~~~~~~---------~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i 68 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS---VWGIDVNGKKK---------EGDYPPSSPLYPTSRLLIAIVHSFGYNGDI 68 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH---hcCCCCCCccc---------cCccCCCCCCCCCHHHHHHHHHHHHhcccH
Confidence 678999999999999999999888864 34444332110 000000000 22267788888999999
Q ss_pred HHHHHHHHHHHHc-ccCCChhHHHHHHHHHh
Q 048764 176 EKVYQYLQKLRST-VRCVNEETGKIIEDWFS 205 (295)
Q Consensus 176 ~~a~~ll~~m~~~-~~~p~~~t~~~l~~~~~ 205 (295)
..|..+++...+. ++..+..+|..|..|--
T Consensus 69 ~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 69 FSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999997664 55666788988877763
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.1 Score=37.57 Aligned_cols=114 Identities=9% Similarity=0.066 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHH-HhcCC--HHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCF-CENLE--AQKAY 157 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~-~~~g~--~~~A~ 157 (295)
.+++...++...+.+ +.|...|..|-..|...|+++.|...|+... .. .| |...|..+-.++ ...|+ .++|.
T Consensus 55 ~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 55 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL-QL--RGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 677777777766543 4678899999999999999999999999877 44 45 445566666654 56676 36666
Q ss_pred c--------H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 158 E--------E----QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 158 ~--------e----~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
. . ..+..+-..+...|++++|...++++.+.. .|+.....+|
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~~i 184 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHHHH
Confidence 6 1 125666667889999999999999997753 5555555555
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.19 Score=34.52 Aligned_cols=49 Identities=10% Similarity=0.029 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+.+++|..+|++..+.. +.+..++..+...+...++++.|.++|+...
T Consensus 13 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 13 LGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777766532 2233566667777777777777777777765
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.68 Score=41.47 Aligned_cols=137 Identities=12% Similarity=0.190 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCC
Q 048764 39 LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV---IPNEALVTSVARLAASKK 115 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~---~pd~~ty~~li~~~~~~g 115 (295)
+++.+.+++.|++.|+.-+.++|-+.+-+....... ...-.+.+|..+|+.|++... .++-.++.+|+.. ...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~--~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKE--DYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 456678999999999999988888766644442211 122248899999999999664 5778888888776 333
Q ss_pred CH----HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcc
Q 048764 116 DS----DYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGR--VEKVYQYLQKLRSTV 189 (295)
Q Consensus 116 ~~----~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~--~~~a~~ll~~m~~~~ 189 (295)
++ +.+..+|+.+. ..|...+-.... .+.+|..+..... +.++.++++.+.+.+
T Consensus 154 ~~e~l~~~~E~~Y~~L~-~~~f~kgn~LQ~--------------------LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLA-DAGFKKGNDLQF--------------------LSHILALSEGDDQEKVARVIELYNALKKNG 212 (297)
T ss_pred cHHHHHHHHHHHHHHHH-HhCCCCCcHHHH--------------------HHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 43 44566777777 666655432110 1112222111111 557889999999999
Q ss_pred cCCChhHHHHH
Q 048764 190 RCVNEETGKII 200 (295)
Q Consensus 190 ~~p~~~t~~~l 200 (295)
+++....+..+
T Consensus 213 ~kik~~~yp~l 223 (297)
T PF13170_consen 213 VKIKYMHYPTL 223 (297)
T ss_pred CccccccccHH
Confidence 99888776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.62 Score=41.81 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc------cHHHHHHHHHhcCCHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR------TYDPALFCFCENLEAQK 155 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~------ty~~ll~~~~~~g~~~~ 155 (295)
.++|.++|-+|.+.. +-+.-+--+|=+.|-+.|.+|.|+++...+. . +||.. ..--|-.-|..+|-+|.
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~---spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-E---SPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHh-c---CCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 459999999998822 1222333456678889999999999999887 2 45532 22234456778999999
Q ss_pred hhc-------HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCC
Q 048764 156 AYE-------EQ-----EITALLKVSAGTGRVEKVYQYLQKLRSTVRCV 192 (295)
Q Consensus 156 A~~-------e~-----~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p 192 (295)
|.. ++ ..-.|+..|-...+|++|.++-.++...+-++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 988 23 36788999999999999999999988765443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.4 Score=35.78 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRL-S-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p-d-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+-..+.+.|++++|+..|++..+....+ + ...+..+-..+...+. +++|...|.+..... +-+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~ 107 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------HDKALEYYHQALELN-PKQPS 107 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cccHH
Confidence 56666777788899999999998887654322 2 2344444444444442 888888888877642 22455
Q ss_pred HHHHHHHHHHcCCC--------------HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC
Q 048764 103 LVTSVARLAASKKD--------------SDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLE 152 (295)
Q Consensus 103 ty~~li~~~~~~g~--------------~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~ 152 (295)
.+..+...|...|+ +++|.+++.... . ..|+. |..++.-+...|.
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-R--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-h--hCchh--HHHHHHHHHhcCc
Confidence 66666667766665 345555555544 2 23443 5556555554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.3 Score=34.52 Aligned_cols=88 Identities=23% Similarity=0.183 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
....+|..+.+.+.....+.+++.+...+ ..+...+|.+|.+++..+ ..+....+.. .++....
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~---------~~~ll~~l~~------~~~~yd~ 72 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD---------PQKEIERLDN------KSNHYDI 72 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC---------HHHHHHHHHh------ccccCCH
Confidence 34566777777777888888888877666 366677777887666554 3344444442 1222233
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.-+++.|-+.+-++++.-++..+.
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDG 96 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhc
Confidence 335555555555555555555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=94.97 E-value=1 Score=36.31 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRL--SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p--d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+...+...|++++|+..|.........| ...+|..+-.++...+. .++|...|+...... +....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~Al~~~-~~~~~ 107 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------HTKALEYYFQALERN-PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cCcHH
Confidence 77778888888999999999999987653222 22455555454544442 999999999987642 23345
Q ss_pred HHHHHHHHHH-------cCCCHHHHHHHHHHh
Q 048764 103 LVTSVARLAA-------SKKDSDYAFELIKRM 127 (295)
Q Consensus 103 ty~~li~~~~-------~~g~~~~A~~l~~~M 127 (295)
+++.+...+. ..|+++.|...+++-
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6677777777 788888776666543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.2 Score=38.15 Aligned_cols=165 Identities=10% Similarity=0.053 Sum_probs=117.8
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 18 TNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 18 ~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
-+..|...|-.-..+--+.||.+.+-.++.+..+..-.++...+-+.-. +..+++ ++.|..-.++..+.+
T Consensus 113 ~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d---------~~aA~~~v~~ll~~~ 183 (400)
T COG3071 113 HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD---------YPAARENVDQLLEMT 183 (400)
T ss_pred cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC---------chhHHHHHHHHHHhC
Confidence 3444555666667777777888888888887776533444444444444 444454 777887777777654
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-------ccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-------RTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-------~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
. -+........+.|.+.|++.....++..|. +.|+--|. .+|+.+++-....+..+.-..
T Consensus 184 p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~ 261 (400)
T COG3071 184 P-RHPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN 261 (400)
T ss_pred c-CChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc
Confidence 3 456778899999999999999999999999 88865553 478888888777777666222
Q ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC
Q 048764 159 EQE-ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 159 e~~-y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
+++ -.+++.-+.+.|+.++|.+++.+-......|+
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 333 46777778899999999999988777666665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.5 Score=41.16 Aligned_cols=154 Identities=15% Similarity=0.215 Sum_probs=84.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcC
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI-PNEALVTSVARLAASK 114 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~-pd~~ty~~li~~~~~~ 114 (295)
+|+++.|...|.+.....-.-....||.=|.+=+.+. +++|+..|-.+.. +- -+..+.--+.+.|-..
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~---------ldeald~f~klh~--il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN---------LDEALDCFLKLHA--ILLNNAEVLVQIANIYELL 571 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC---------HHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHh
Confidence 5677777777777764432222223333222223333 6666666655432 10 1233333444455555
Q ss_pred CCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc-----------------------------------
Q 048764 115 KDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE----------------------------------- 158 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~----------------------------------- 158 (295)
.++..|++++-+.. .+.|+ ....+-|-..|-+.|+-..|++
T Consensus 572 ed~aqaie~~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 572 EDPAQAIELLMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 55666666554332 33343 3345555555666666666665
Q ss_pred ----------HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 159 ----------EQEITALLKV-SAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 ----------e~~y~~ll~~-~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
...|..||.. +.+.|++.+|+++++...+. +.-+..+...|.+..
T Consensus 649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 1127777765 45689999999999998653 344566777777665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.065 Score=38.03 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 048764 36 SKDLATAISLYESALSLNF-RLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS 113 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~-~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~ 113 (295)
.|+++.|+.+|+++.+..- .++...+-.+-. ++..+. +++|..+++. .+.+. .+....-.+-.+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~---------y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK---------YEEAIELLQK-LKLDP-SNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH---------HHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC---------HHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHH
Confidence 4667777777777765532 122222222333 333333 7777777766 22111 122222233556667
Q ss_pred CCCHHHHHHHHHH
Q 048764 114 KKDSDYAFELIKR 126 (295)
Q Consensus 114 ~g~~~~A~~l~~~ 126 (295)
.|++++|+.+|++
T Consensus 71 l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 71 LGKYEEAIKALEK 83 (84)
T ss_dssp TT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHhc
Confidence 7777777777654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.18 Score=39.68 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=61.5
Q ss_pred HHhcCCHHHHHHHHHHHHhc--C-CCCCHH------------------hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH
Q 048764 33 CTKSKDLATAISLYESALSL--N-FRLSLH------------------HFNALLYLCSNSATDPSLKDSALRHGFRVFDQ 91 (295)
Q Consensus 33 ~~~~g~~~~A~~lf~~m~~~--g-~~pd~~------------------ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~ 91 (295)
....++...+...+.++... | +-|+.. +...++..+...+ ..++|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~ 87 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAG--------DYEEALRLLQR 87 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CHHHHHHHHHH
Confidence 35567888888888877632 2 333321 1112222122222 38899999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCCCCCccc
Q 048764 92 MLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN----EFNVVPRLRT 139 (295)
Q Consensus 92 M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi~P~~~t 139 (295)
+.... |-|+..|-.+|.+|...|+...|.++|+.+.. ..|+.|+..|
T Consensus 88 ~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 88 ALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 87743 46899999999999999999999999998753 5699998765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=94.63 E-value=1 Score=45.28 Aligned_cols=159 Identities=15% Similarity=0.113 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhH-------HHHHHHHHcCCCCCC-------------cchHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHF-------NALLYLCSNSATDPS-------------LKDSALRH 84 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty-------~~ll~~~~~~~~~~~-------------~~~~~~~~ 84 (295)
+++.++..|.+...++.|+.....+...-..+|..-+ ...+..|..++..++ .+. .+.
T Consensus 318 d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~--~e~ 395 (895)
T KOG2076|consen 318 DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE--REL 395 (895)
T ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc--cch
Confidence 8889999999999999999998888773333333222 000111111111000 011 223
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----
Q 048764 85 GFRVFDQMLSNNVI--PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---- 158 (295)
Q Consensus 85 a~~lf~~M~~~g~~--pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---- 158 (295)
...+..-.....+. -+.-.|.-+.++|-..|++.+|+.+|.... ..-.--+...|-.+-.+|-..|..+.|.+
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~-~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT-NREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh-cCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 33344444455544 356679999999999999999999999998 65555667789999999999999999998
Q ss_pred ----HHH-H---HHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 159 ----EQE-I---TALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 159 ----e~~-y---~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.|. + .+|-..+-+.|+.++|.+.+..|.
T Consensus 475 vl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 475 VLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 221 3 344445778999999999999975
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=2 Score=43.21 Aligned_cols=120 Identities=8% Similarity=-0.006 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHH-HHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNA-LLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~-ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.+.-|-..-.+.|.+++|..+++...+. .||-...-. +...+.+.+. +++|+..+++..... +-+...
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~--------~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQG--------IEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhcc--------HHHHHHHHHHHhhcC-CCCHHH
Confidence 6667777788889999999999988764 565544444 4445655552 999999999988743 234566
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.+.+-.++.+.|++++|.++|++.. .. -|+ ..++..+-.++-..|+.++|..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~-~~--~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLS-RQ--HPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH-hc--CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777788889999999999999998 53 344 5677777888888999998877
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1 Score=42.66 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
+|-+-=+.+.-.+++++|..=|++..+-. +-+++.|--+-. +|..+. ++++...|++-+++ +|--.-.
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k---------~~~~m~~Fee~kkk-FP~~~Ev 464 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHK---------IAESMKTFEEAKKK-FPNCPEV 464 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHh-CCCCchH
Confidence 44444444444445555555555554321 223334433333 333343 88888999987663 4444667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC--cc--cHHHHHH----HHHhcCCHHHhhc------------HHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPR--LR--TYDPALF----CFCENLEAQKAYE------------EQEIT 163 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~--~~--ty~~ll~----~~~~~g~~~~A~~------------e~~y~ 163 (295)
||-.-..+.-.++++.|.+.|+.-. . +.|+ .+ .-.++|+ .+--.+++..|.+ +-.|.
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai-~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~ 541 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAI-E--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYE 541 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHH-h--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHH
Confidence 8888888888999999999998766 2 2233 11 1111111 1123467776666 33488
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+|-..-...|++++|.++|++-..
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888889999999999999988543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.46 E-value=1 Score=39.31 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=78.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH----HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY----LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~----~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
+..+.|..+++-|.....+|.+-. +-.|.+-|-. +...+. .+.+|+-+|++|-+ ..+|+..+.|
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge--------k~qdAfyifeE~s~-k~~~T~~lln 211 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE--------KIQDAFYIFEELSE-KTPPTPLLLN 211 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch--------hhhhHHHHHHHHhc-ccCCChHHHc
Confidence 445567778899999999998543 4466665544 333344 49999999999965 4679999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCH
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEA 153 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~ 153 (295)
.+..++-..|++++|..++++.. ... .-+..|..-+|.+--..|.-
T Consensus 212 G~Av~~l~~~~~eeAe~lL~eaL-~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 212 GQAVCHLQLGRYEEAESLLEEAL-DKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHH-hcc-CCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988 433 12233444444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.18 E-value=2.3 Score=36.93 Aligned_cols=142 Identities=8% Similarity=-0.037 Sum_probs=85.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
=..+.-.|+-+.++.+..+.... -+-|....+.+.. ....+. +..|...|.+... .-++|..+||.+=
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~---------~~~A~~~~rkA~~-l~p~d~~~~~~lg 141 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGN---------FGEAVSVLRKAAR-LAPTDWEAWNLLG 141 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcc---------hHHHHHHHHHHhc-cCCCChhhhhHHH
Confidence 34445556666666665543321 2334344444555 445555 7777777777654 3357777777777
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--HHH----------HHHHHHHHHhcCCH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--EQE----------ITALLKVSAGTGRV 175 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--e~~----------y~~ll~~~~~~g~~ 175 (295)
-+|.+.|+.+.|..-|.+-. + +.|+ ...+|-|.-.|.-.|+.+.|.. .+. -..|.-.....|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl-~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQAL-E--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHH-H--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 77777777777777776655 2 2233 2345566666667777777776 111 34455556677888
Q ss_pred HHHHHHHHHH
Q 048764 176 EKVYQYLQKL 185 (295)
Q Consensus 176 ~~a~~ll~~m 185 (295)
++|.++...-
T Consensus 219 ~~A~~i~~~e 228 (257)
T COG5010 219 REAEDIAVQE 228 (257)
T ss_pred HHHHhhcccc
Confidence 8888776553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.4 Score=35.45 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=113.9
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
...|+. +|..+-..|-+.|+.+.|.+-|++..+.. +-+....|..=- +|+++. +++|..-|+.-...
T Consensus 63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~---------~~eA~q~F~~Al~~ 132 (250)
T COG3063 63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR---------PEEAMQQFERALAD 132 (250)
T ss_pred HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC---------hHHHHHHHHHHHhC
Confidence 344554 99999999999999999999999887653 223445555555 899997 99999999988774
Q ss_pred CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHH
Q 048764 96 NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEI 162 (295)
Q Consensus 96 g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y 162 (295)
-. .--..||..+--...+.|+.+.|.+.|..-. ... .-...+.-.+..-..+.|+...|.. ....
T Consensus 133 P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL-~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL 210 (250)
T COG3063 133 PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL-ELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESL 210 (250)
T ss_pred CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH-HhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHH
Confidence 32 2234678888777788999999999999987 443 2334567778888889999888876 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
--.|+.-.+.|+.+.+.++=..+.+
T Consensus 211 ~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 211 LLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555566777776666655554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=94.07 E-value=2.9 Score=35.46 Aligned_cols=140 Identities=17% Similarity=0.119 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH-HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLSL-HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE- 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~-~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~- 101 (295)
.+..+-..+.+.|++++|+..|+++.+..- .|.. .++..+-..+...........+..+.|.+.|+.+.... |+.
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 149 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSE 149 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCCh
Confidence 566677889999999999999999986532 1221 12222222222221111223356889999999997743 332
Q ss_pred HHHH-----------------HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHH
Q 048764 102 ALVT-----------------SVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITA 164 (295)
Q Consensus 102 ~ty~-----------------~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ 164 (295)
..+. .+-..|.+.|++++|...|.... .. .|+..-+ .+ .+..
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~-------------~~-----a~~~ 208 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV-EN--YPDTPAT-------------EE-----ALAR 208 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HH--CCCCcch-------------HH-----HHHH
Confidence 2221 23445666788888888888776 32 2332100 00 1445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+..++...|+.++|..+++.+..
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 66667777777777777777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.042 Score=39.01 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048764 80 SALRHGFRVFDQMLSNNV-IPNEALVTSVARLAASKKDSDYAFELIKR 126 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 126 (295)
+.++.|..+|+.+.+... .|+...+-.+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 458999999999987543 23455555688999999999999999988
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.6 Score=38.14 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
...|.++-.+.. | ||..-|-..|++++..+++++-..+... .-. .+-|-+.+.+|.+.|...+|..
T Consensus 193 ~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKs--PIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 193 EKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKS--PIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCC--CCChHHHHHHHHHCCCHHHHHHHHH
Confidence 667777765553 3 8889999999999999999876664332 113 3889999999999999888887
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...+..-+..|.+.|++.+|.+.-.+.
T Consensus 262 k~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 262 KIPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred hCChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 333577888888889888887665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.6 Score=39.44 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=111.5
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLI-SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~-li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
-|.. +=..|.+.|.+.+|...|.....+--.| .||-.|-..|.+-+ +...|+.+|.+-+. ..|-.+|
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLskvY~rid--------QP~~AL~~~~~gld--~fP~~VT 291 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSKVYQRID--------QPERALLVIGEGLD--SFPFDVT 291 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHHHHHHhc--------cHHHHHHHHhhhhh--cCCchhh
Confidence 4444 4567788999999999999887765444 46666666888887 48899999998765 3466666
Q ss_pred H-HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH-HHHHHHHHH
Q 048764 104 V-TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE-ITALLKVSA 170 (295)
Q Consensus 104 y-~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~-y~~ll~~~~ 170 (295)
| .-+.+.+-..++.++|.++++... +.. .-|+....++-.+|.=.++.+.|+. .++ |+.+--+|.
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vl-k~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVL-KLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHH-hcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 5 457778888999999999999987 443 3466667777778888888888877 333 555555555
Q ss_pred hcCCHHHHHHHHHHHHHcccCCC
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
-.+.+|-++.-|.+-...--+|+
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcc
Confidence 66777777777776655544444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.4 Score=37.70 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~l 181 (295)
.+...++..+...|+++.|..+...+. ... .-|... |..+|.+|...|+...|.++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l-~~d-P~~E~~----------------------~~~lm~~~~~~g~~~~A~~~ 118 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRAL-ALD-PYDEEA----------------------YRLLMRALAAQGRRAEALRV 118 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH-HHS-TT-HHH----------------------HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH-hcC-CCCHHH----------------------HHHHHHHHHHCcCHHHHHHH
Confidence 345555555556666666666666665 332 122333 66777778888888888877
Q ss_pred HHHHH-----HcccCCChhHHHHHHH
Q 048764 182 LQKLR-----STVRCVNEETGKIIED 202 (295)
Q Consensus 182 l~~m~-----~~~~~p~~~t~~~l~~ 202 (295)
+.++. +.|+.|++.|-.+...
T Consensus 119 Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 119 YERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 77753 4588999888766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.77 E-value=6.2 Score=37.29 Aligned_cols=146 Identities=13% Similarity=0.115 Sum_probs=108.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
+=+-|+-.++.+.|...|....+-+ +-....|+.+=+=|..-.. ...|.+-|..-++-+ +.|-..|=.|=
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKN--------t~AAi~sYRrAvdi~-p~DyRAWYGLG 405 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKN--------THAAIESYRRAVDIN-PRDYRAWYGLG 405 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcc--------cHHHHHHHHHHHhcC-chhHHHHhhhh
Confidence 3344555667888888888877654 2233455555555554443 556777777665522 46888899999
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRV 175 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~ 175 (295)
.+|.-.+...-|+-+|++-. .++| |.+.|.+|=++|.+.+++++|.. ...|..|-+.+-+-++.
T Consensus 406 QaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred HHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999866 3455 67889999999999999999998 23488888899999999
Q ss_pred HHHHHHHHHHHH
Q 048764 176 EKVYQYLQKLRS 187 (295)
Q Consensus 176 ~~a~~ll~~m~~ 187 (295)
.+|...+.+-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999888887655
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.9 Score=34.97 Aligned_cols=113 Identities=14% Similarity=0.237 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHH
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~ 154 (295)
..|.+++|...|++..+....|+ ...|..+...+.+.|++++|...+.+.. .. .|+ ...+..+-..|...|+..
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-EL--NPKQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CcccHHHHHHHHHHHHHcCChH
Confidence 44567778888887766433222 3567777777777888888888777776 32 343 333444444555555554
Q ss_pred HhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHh
Q 048764 155 KAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 205 (295)
Q Consensus 155 ~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~ 205 (295)
.+.... .. ....+++|.+++.+... .++..+..+..|+.
T Consensus 124 ~a~~~~--~~------A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~ 162 (172)
T PRK02603 124 EEAGDQ--DE------AEALFDKAAEYWKQAIR----LAPNNYIEAQNWLK 162 (172)
T ss_pred hHhhCH--HH------HHHHHHHHHHHHHHHHh----hCchhHHHHHHHHH
Confidence 433210 00 01125666677666554 23444555666663
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.28 Score=49.60 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 048764 37 KDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKD 116 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~ 116 (295)
+..+.|+.+|.+..+.. +-|.+.-|.+=-.++..+ .+.+|..||.+..+... -+..+|-.+-+.|...|+
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg--------~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG--------RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc--------CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH
Confidence 34677888887776553 445555555444333333 49999999999988654 344578889999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH--HHHHHHH---------------
Q 048764 117 SDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE--ITALLKV--------------- 168 (295)
Q Consensus 117 ~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~--y~~ll~~--------------- 168 (295)
+..|+++|+.......-.-+....+.|-.++.+.|.+.+|.. ++. ||..+-.
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 999999999865355544556667888899999999999888 111 2222111
Q ss_pred ---HHhcCCHHHHHHHHHHHHHcccC
Q 048764 169 ---SAGTGRVEKVYQYLQKLRSTVRC 191 (295)
Q Consensus 169 ---~~~~g~~~~a~~ll~~m~~~~~~ 191 (295)
....+.++.|.++|.+|...+-.
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11234577888899998887655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=5.5 Score=40.06 Aligned_cols=119 Identities=10% Similarity=-0.038 Sum_probs=88.0
Q ss_pred CCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 55 RLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 55 ~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
+.++..+-.|-. .-..+. +++|..+++...+. .|| ......+...+.+.+++++|+..++... ..
T Consensus 83 ~~~~~~~~~La~i~~~~g~---------~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~~- 149 (694)
T PRK15179 83 PHTELFQVLVARALEAAHR---------SDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF-SG- 149 (694)
T ss_pred cccHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh-hc-
Confidence 344555555555 333344 89999999998873 455 6677889999999999999999999987 43
Q ss_pred CCCCcccH-HHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 133 VVPRLRTY-DPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 133 i~P~~~ty-~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.|+..+. ..+-.++...|+.++|.. +..+..+=.++...|+.++|...|++-..
T Consensus 150 -~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 150 -GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5776654 455556778899999888 22366666678888999999999888754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.2 Score=41.81 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+-.+-+-|-...+...|++++-+...- ++-|....+.|-.+|-+.++ -..|+..+-+-- +-++-|..|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd--------ksqafq~~ydsy-ryfp~nie~i 629 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD--------KSQAFQCHYDSY-RYFPCNIETI 629 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc--------hhhhhhhhhhcc-cccCcchHHH
Confidence 3444455666677888888888665432 56677888888888877663 445555544321 2244566777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH-hcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC-ENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~-~~g~~~~A~~ 158 (295)
..|-.-|....-+++|+.+|+.-. =+.|+..-|..+|..|. ++|+..+|++
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 777777777777778888877643 45788888877776554 5678888777
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2 Score=43.74 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=107.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHHcCCC----CCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048764 32 SCTKSKDLATAISLYESALSL-NFRLSLHHFNALLYLCSNSAT----DPSLKDSALRHGFRVFDQMLSNNVIPNEALVTS 106 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~-g~~pd~~ty~~ll~~~~~~~~----~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~ 106 (295)
.|.+...+..|-.-|+...+. -..+|+++.-+|=+.|-.... .+-...++.++|+.+|.+.+... +.|...-|.
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccc
Confidence 444444444444444433222 123455555555553332221 11123456899999999998754 467888888
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--H------------HHHHHHHHHHHhc
Q 048764 107 VARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--E------------QEITALLKVSAGT 172 (295)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--e------------~~y~~ll~~~~~~ 172 (295)
+--.++..|++..|.++|.+.+ .... -+.-+|--+-++|...|++..|.+ + ...+.|-+++-+.
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVr-Ea~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVR-EATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHH-HHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 8889999999999999999998 5542 344578889999999999999998 1 1156777788888
Q ss_pred CCHHHHHHHHHHHHHcccCCChhH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNEET 196 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~~t 196 (295)
|.+.+|.+.+..-+.. .|...+
T Consensus 730 ~~~~eak~~ll~a~~~--~p~~~~ 751 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHL--APSNTS 751 (1018)
T ss_pred hhHHHHHHHHHHHHHh--CCccch
Confidence 9999998887776553 454433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.5 Score=32.43 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=68.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH---HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----HHHH
Q 048764 32 SCTKSKDLATAISLYESALSLNFRLSLHHFNALLY---LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN----EALV 104 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~---~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd----~~ty 104 (295)
++-..|+.++|+.+|++....|...+ .--..+|. .+...+ .+++|..+|++..... |+ ....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~--p~~~~~~~l~ 78 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLG--------RYDEALALLEEALEEF--PDDELNAALR 78 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC--CCccccHHHH
Confidence 45667999999999999999886654 23344444 444444 3999999999887642 33 1222
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
..+--++...|+.++|+..+-.-. .++...|.--|..|..
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~l-----a~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEAL-----AETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 223336677899999998887765 3444477777777653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.1 Score=38.87 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
..+.++....+.|++..|+..|.+...- -++|...||.+=-.|.+.+. ++.|..-|.+-.+--. -+-..+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr--------~~~Ar~ay~qAl~L~~-~~p~~~ 171 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR--------FDEARRAYRQALELAP-NEPSIA 171 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC--------hhHHHHHHHHHHHhcc-CCchhh
Confidence 5666889999999999999999998754 48899999988888877664 8999999998877322 233567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|.|--.|.-.|+++.|..++..-. ..+ .-|...-.-|.-.....|+++.|..
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~-l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAY-LSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHH-hCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 778888888999999999999887 555 3355556667778889999999988
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.6 Score=32.17 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcH
Q 048764 82 LRHGFRVFDQMLSNNV--IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEE 159 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e 159 (295)
+++|.+.|..+....- +.....+..+...+.+.|+++.|..+|+... ... |+.......
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--p~~~~~~~~---------------- 78 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV-KKY--PKSPKAPDA---------------- 78 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHC--CCCCcccHH----------------
Confidence 9999999999976431 1123466678889999999999999999987 432 442211000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 160 QEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 160 ~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+..+-..+...|+.++|..++.++...
T Consensus 79 --~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 --LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred --HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 223344466778888888888888775
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=11 Score=39.03 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=97.9
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHHcCCCCC---------CcchHHHHHHH
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSL-NFRLSLHHFNALLYLCSNSATDP---------SLKDSALRHGF 86 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~ty~~ll~~~~~~~~~~---------~~~~~~~~~a~ 86 (295)
...|.. .|..||..+-..+++++|..+.+...+. .-.+..+-|..+|.. .....+. ......+.-+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhhhhhhhcccccchhHHH
Confidence 344443 9999999999999999999999965543 233444444444332 2222111 01111233333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHH
Q 048764 87 RVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALL 166 (295)
Q Consensus 87 ~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll 166 (295)
.++..|... .-+...+-.|..+|-+.|+.++|..+++++. ... .-|....|-+-..|+.. ++++|.. -|.-.+
T Consensus 104 ~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D-~~n~~aLNn~AY~~ae~-dL~KA~~--m~~KAV 176 (906)
T PRK14720 104 HICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLV-KAD-RDNPEIVKKLATSYEEE-DKEKAIT--YLKKAI 176 (906)
T ss_pred HHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHh-hHHHHHH--HHHHHH
Confidence 344444442 2233567778888888999999999999999 777 45566778888888888 9999877 111222
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048764 167 KVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+....++..+++++.++..
T Consensus 177 ~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 177 YRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHhhhcchHHHHHHHHHHh
Confidence 223344444555555554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.49 Score=31.42 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+++|..+|++.++.. +-+...+..+-..+...|++++|..+|++..
T Consensus 12 ~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4999999999999876 3367888889999999999999999999987
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.72 E-value=6.2 Score=37.51 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
+..|++||+.-.+ ..||...|++.|+--.+-...+.|..+++... -+-|++.+|---..-=-+.|.+..|..
T Consensus 157 i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 157 IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6677777776654 46999999999999888889999999999876 345888888887777778888777766
Q ss_pred --------HHHHHHHHHHH----HhcCCHHHHHHHHHHHHH
Q 048764 159 --------EQEITALLKVS----AGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 --------e~~y~~ll~~~----~~~g~~~~a~~ll~~m~~ 187 (295)
+..-..|+-++ .+...++.|..+++--..
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333 345566677766665544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=92.53 E-value=8.7 Score=35.53 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH---HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY---LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~---~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
..+-++ .|....+++.-+++.+.|....... .+-+..|. +++-.+. .+.|..++|+.++..++...-.++.
T Consensus 144 v~~lll-SyRdiqdydamI~Lve~l~~~p~~~--~~~~~~i~~~yafALnRr---n~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 144 VINLLL-SYRDIQDYDAMIKLVETLEALPTCD--VANQHNIKFQYAFALNRR---NKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHH-HhhhhhhHHHHHHHHHHhhccCccc--hhcchHHHHHHHHHHhhc---ccCCCHHHHHHHHHHHHhccCCCCh
Confidence 344444 5999999999999999998653211 11122211 2222221 1233589999999997776677777
Q ss_pred HHHHHHHHHHHc---------CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh----c----------
Q 048764 102 ALVTSVARLAAS---------KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY----E---------- 158 (295)
Q Consensus 102 ~ty~~li~~~~~---------~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~----~---------- 158 (295)
.||-.+-+.|-. ....++|...|.+ .+.+.||.++=--+...+.-+|...... +
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k---gFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK---GFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH---HHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 788777665543 2246777777765 4556677655322333333333221111 1
Q ss_pred -------HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 -------EQ---EITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 -------e~---~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+. ++.+++.++.-.|+.++|.+..++|...
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11 1689999999999999999999999876
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.56 Score=31.36 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 34 TKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
.+.|++++|+.+|+++.... +-|...+-.+..++...+. +++|..+++.+.... ||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~--------~~~A~~~l~~~~~~~--~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQ--------YDEAEELLERLLKQD--PDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT---------HHHHHHHHHCCHGGG--TTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC--cCHHHHHHHH
Confidence 46799999999999998763 3355666666675555552 999999999988743 6656665554
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.37 E-value=2.4 Score=37.54 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=82.9
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
.|.|. .|--|=..|...|+++.|+.-|....+- -++|...+..+-. ++...+.. .-.++..+|++++....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~------~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQ------MTAKARALLRQALALDP 224 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCc------ccHHHHHHHHHHHhcCC
Confidence 33444 9999999999999999999999987754 1344455555555 33333311 16789999999987432
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
-|+.+-.-|-..+...|++.+|...++.|. +. -|....+..+|..-
T Consensus 225 -~~iral~lLA~~afe~g~~~~A~~~Wq~lL-~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 225 -ANIRALSLLAFAAFEQGDYAEAAAAWQMLL-DL--LPADDPRRSLIERS 270 (287)
T ss_pred -ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hc--CCCCCchHHHHHHH
Confidence 344455556668889999999999999999 44 46666777777643
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.9 Score=39.62 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A 156 (295)
..+.+++|..+|.+..+..- -+...|..+-.+|.+.|++++|+..++... .. .|+ ...|..+-.+|...|+.+.|
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l--~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAI-EL--DPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CcCCHHHHHHHHHHHHHhCCHHHH
Confidence 45668888888888877432 356777778888888888888888888877 43 343 33444444444444444444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=7.5 Score=35.62 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHH-HHHHHhcCCHHHhhc--
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPA-LFCFCENLEAQKAYE-- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~l-l~~~~~~g~~~~A~~-- 158 (295)
+++++..+..+...=..-|..-|| +..+++..|++.+|.++|-... .-.+ -|.++|-++ ..+|.+.+..+.|++
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 445555555554433333333333 4455555666666666655544 2222 233444433 334555566555555
Q ss_pred -----HHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 159 -----EQE----ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 159 -----e~~----y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
..+ ...+-+-|-+.+.+--|-..|+.+.. ..|+++.|
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 001 12222335555555555555555533 34555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.84 Score=40.85 Aligned_cols=94 Identities=5% Similarity=0.013 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN---FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g---~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
+-..++..-....+++.+..++-.++.+. ..|+. +-.+++++|-.-+ .+++..+...=.+.|+.||-
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky~---------pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKYD---------PQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHccC---------hHHHHHHHhCcchhccccch
Confidence 66677777777788888888887777543 33443 3345566666666 66888888887888888888
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.|++.||+.+.+.+++..|..+.-.|.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 888888888888888888877776665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=91.68 E-value=3.1 Score=36.80 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
..... ...++|. |...++.+.|..+|+...+. ++-+..-|..-|. +...++ .+.|+.||+..... +
T Consensus 33 ~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d---------~~~aR~lfer~i~~-l 100 (280)
T PF05843_consen 33 CTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLND---------INNARALFERAISS-L 100 (280)
T ss_dssp S-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT----------HHHHHHHHHHHCCT-S
T ss_pred CCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHHHh-c
Confidence 34444 4455554 44467788899999998765 5667777888888 555555 99999999998875 4
Q ss_pred CCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 98 IPNE---ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 98 ~pd~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
.++. ..|...|+--.+.|+++.+..+.+.|. .. -|+..+...+++-|
T Consensus 101 ~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~-~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 101 PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE-EL--FPEDNSLELFSDRY 150 (280)
T ss_dssp SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH-HH--TTTS-HHHHHHCCT
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH--hhhhhHHHHHHHHh
Confidence 3332 499999999999999999999999988 43 46655555554433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.65 E-value=12 Score=35.38 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEA 102 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ 102 (295)
..|+-+=+-|..-.+...|..-|....+-. |.|-..|-.|=.+|.-.++ ..-|+-.|++-.+ ++| |..
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~M--------h~YaLyYfqkA~~--~kPnDsR 433 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKM--------HFYALYYFQKALE--LKPNDSR 433 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcc--------hHHHHHHHHHHHh--cCCCchH
Confidence 388888888999889999999988887653 5577777777777777774 4557777776554 334 678
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|.+|=..|.+-+++++|...|..-. ..| ..+...|..|-+.|-+-++..+|-.
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai-~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAI-LLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-hcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999988877 555 3455778888888888888888776
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=91.33 E-value=15 Score=35.68 Aligned_cols=128 Identities=10% Similarity=0.087 Sum_probs=95.3
Q ss_pred CCCcHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 19 NPNPET---NFLISLQSCTKSKDLATAISLYESALSLNFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 19 ~~~p~~---t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
..+|.. +|.-+-..|-..|++++|+.+.++..+. .|+ +..|..--..+.+.+. +.+|.+.+++-.+
T Consensus 187 ~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~--------~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 187 KEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD--------LKEAAEAMDEARE 256 (517)
T ss_pred cCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHh
Confidence 345554 4455567788999999999999998876 344 4455555557877774 9999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccH--------HHHHHHHHhcCCHHHhhc
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTY--------DPALFCFCENLEAQKAYE 158 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty--------~~ll~~~~~~g~~~~A~~ 158 (295)
-.. -|...=|-.+..+-++|++++|..++.... ..+..|-...+ .-.-.+|.+.|+...|+.
T Consensus 257 LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 257 LDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFT-REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred CCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 554 577777778888889999999999999988 66654433222 233467888999999888
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=91.06 E-value=2.3 Score=42.42 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=81.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARL 110 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~ 110 (295)
.+......+.+|+.+++.+.++.+.. .-|.-+-.-|+..+ .++.|.++|.+- ..++--|..
T Consensus 740 eaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~--------dfe~ae~lf~e~---------~~~~dai~m 800 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKG--------DFEIAEELFTEA---------DLFKDAIDM 800 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccch--------hHHHHHHHHHhc---------chhHHHHHH
Confidence 33444555666677777666554322 23333444555554 399999998763 346778999
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
|.++|+++.|+.+-.+.- |-......|-+-..-+-+.|.+.+|.+ +|+ --|..|-++|..|.+.++..+
T Consensus 801 y~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~--~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD--KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch--HHHHHHHhhCcchHHHHHHHH
Confidence 999999999999876654 433444556666666667777777766 333 235556666666666555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.03 E-value=20 Score=36.61 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=80.8
Q ss_pred CCCcHhHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 19 NPNPETNFLISLQSCT--KSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 19 ~~~p~~t~~~li~~~~--~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.+.|+..|..++.++. |.|..++|+.+++.....+.. |.-|...|-+.|...+ +.++|..+|+....
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~--------~~d~~~~~Ye~~~~-- 105 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG--------KLDEAVHLYERANQ-- 105 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh--------hhhHHHHHHHHHHh--
Confidence 4567777777777764 678899999888877665544 8888888888888777 48999999998765
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
..|++.-...+..+|++.+++.+-...--+|- +...-+.+.|.++++.+.
T Consensus 106 ~~P~eell~~lFmayvR~~~yk~qQkaa~~Ly--K~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 106 KYPSEELLYHLFMAYVREKSYKKQQKAALQLY--KNFPKRAYYFWSVISLIL 155 (932)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcccchHHHHHHHHH
Confidence 45888888889999999887755333322222 122233445555555443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=91.03 E-value=4.8 Score=32.32 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIP--NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFC 148 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~ 148 (295)
+++|...|.........| ...+|..+-..|...|++++|+..++... .. .|+. .++..+...+.
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~~--~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL-ER--NPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CcCcHHHHHHHHHHHH
Confidence 999999999887643222 23578888899999999999999998877 43 3432 33444444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.2 Score=30.66 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc-CCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEF-NVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~-gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~ 179 (295)
..+|+.+-..|...|++++|+..|++.. .. ...++ ...-++.. |..|-..+...|+.++|.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~--~~~~~a~~---------------~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKAL-DIEEQLGD--DHPDTANT---------------LNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHHHHTTT--HHHHHHHH---------------HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHCC--CCHHHHHH---------------HHHHHHHHHHcCCHHHHH
Confidence 3578889999999999999999999887 32 11122 11111222 556666677788888888
Q ss_pred HHHHHH
Q 048764 180 QYLQKL 185 (295)
Q Consensus 180 ~ll~~m 185 (295)
+++++-
T Consensus 67 ~~~~~a 72 (78)
T PF13424_consen 67 EYYQKA 72 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
|
... |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.93 E-value=15 Score=34.91 Aligned_cols=147 Identities=9% Similarity=-0.004 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
-+...+.+-........+-.++.+-.+ -.-...-|..-|..+..+. +++|+..+..+... .+-|..-+
T Consensus 276 ~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~---------~d~A~~~l~~L~~~-~P~N~~~~ 343 (484)
T COG4783 276 LARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQ---------YDEALKLLQPLIAA-QPDNPYYL 343 (484)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcc---------cchHHHHHHHHHHh-CCCCHHHH
Confidence 555555544444333444333333222 1334567888888777777 88999999998763 33455566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~~ 171 (295)
......+...++.++|.+.++.+. . ..|+. ...-.+-++|.+.|+..+|.. .+ .|..|-.+|..
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal-~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKAL-A--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH-h--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 667778999999999999999998 4 35774 334455667788888887777 11 28888888888
Q ss_pred cCCHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLR 186 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~ 186 (295)
.|+..++..-..++-
T Consensus 421 ~g~~~~a~~A~AE~~ 435 (484)
T COG4783 421 LGNRAEALLARAEGY 435 (484)
T ss_pred hCchHHHHHHHHHHH
Confidence 888887776666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.89 E-value=8.7 Score=37.67 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=108.8
Q ss_pred CCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 18 TNPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 18 ~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
-...|.- +|+-+=+-+.....+|.|..-|... +.+|..+||..-. +.. +.+.++++.|.--|+.-.+
T Consensus 448 iQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~v------y~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 448 IQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYGLGTV------YLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred hccCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHhhhhh------eeccchhhHHHHHHHhhhc
Confidence 3444543 6666666677778889998888766 5778899998866 211 1222348899988888765
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HH-H
Q 048764 95 NNVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQ-E 161 (295)
Q Consensus 95 ~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~-~ 161 (295)
+.| |.+....+...+-+.|+.|+|+++|++-. ...- -|..+----...+...++.++|+. |. .
T Consensus 518 --INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~-~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v 593 (638)
T KOG1126|consen 518 --INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI-HLDP-KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSV 593 (638)
T ss_pred --CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH-hcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence 434 56777777788888999999999999977 4432 222222223445666788888888 11 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
|..|-..|.+.|+.+.|+.-|.-+.+
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhc
Confidence 78888889999999998876666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=8.1 Score=33.95 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-- 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-- 97 (295)
.|...+....+.|++++|+..|+.+.+.- |+. ..+--|-. ++..++ +++|...|..+.+.-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~---------~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGK---------KDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHCCCC
Confidence 89999988888899999999999988653 221 22223333 445555 9999999999986321
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+.....+--+...+-..|+.+.|..+|+...
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1123334444556778999999999999887
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.65 E-value=8 Score=37.27 Aligned_cols=135 Identities=12% Similarity=0.209 Sum_probs=92.0
Q ss_pred HHHHHHHHHHh-cCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHH
Q 048764 41 TAISLYESALS-LNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEALVTSVARLAASKKDSD 118 (295)
Q Consensus 41 ~A~~lf~~m~~-~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ty~~li~~~~~~g~~~ 118 (295)
.....++++.. ..+.|+ .+|-.+|+.-.+... +..|+.||.+..+.+..+ ++.+++++|.-||. +|..
T Consensus 349 ~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eG--------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~ 418 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEG--------LKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKE 418 (656)
T ss_pred hhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhh--------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChh
Confidence 33444444442 234444 456666674444332 899999999999988888 89999999998886 4789
Q ss_pred HHHHHHHH-hhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 048764 119 YAFELIKR-MNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------------EQEITALLKVSAGTGRVEKVYQYL 182 (295)
Q Consensus 119 ~A~~l~~~-M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------------e~~y~~ll~~~~~~g~~~~a~~ll 182 (295)
-|+++|+- |+ .+|=.|-.+ ...++-+.+.++-..+.. .+.|..+|+.=...|++.-++.+-
T Consensus 419 ~AfrIFeLGLk-kf~d~p~yv--~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 419 TAFRIFELGLK-KFGDSPEYV--LKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHHHHHHHHH-hcCCChHHH--HHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999985 55 665444322 234444445454333332 234999999999999999999998
Q ss_pred HHHHHc
Q 048764 183 QKLRST 188 (295)
Q Consensus 183 ~~m~~~ 188 (295)
+++...
T Consensus 496 kR~~~a 501 (656)
T KOG1914|consen 496 KRRFTA 501 (656)
T ss_pred HHHHHh
Confidence 887654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.63 E-value=16 Score=38.15 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHcCCCC-------------------CCcchHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN--FRLSLHHFNALLYLCSNSATD-------------------PSLKDSALR 83 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g--~~pd~~ty~~ll~~~~~~~~~-------------------~~~~~~~~~ 83 (295)
.-+..+.++...+-..+-++++++..-.+ +.-+...-|.||--.-+.+.. .+..++-++
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 34455677777888888888888876332 222222233333211122210 124566789
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----
Q 048764 84 HGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----- 158 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----- 158 (295)
+|+.+|+.-- .+....+.||. .-+.+|.|.++-+... .|. .|+-+-.+-...|.+.+|.+
T Consensus 1066 EAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-----~p~--vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1066 EAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-----EPA--VWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-----ChH--HHHHHHHHHHhcCchHHHHHHHHhc
Confidence 9999998753 46677777776 5567889988887776 555 68888888888899988888
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 198 (295)
...|.-+|+...+.|.+++...++..-+...+.|...+.-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSEL 1172 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHH
Confidence 2349999999999999999999998888888888766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.55 E-value=6 Score=37.57 Aligned_cols=145 Identities=13% Similarity=0.192 Sum_probs=115.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 35 KSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
...|++.+..+|....+ =+|-..+||..+=-+++.-. .++..+..|++++..-. |.-|-..+|-.-|..-.+-
T Consensus 378 e~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~fe----IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFE----IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHH----HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 35788889999988887 47778889988866666532 12223888999988754 6679999999999999999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------------HHHHHHHHHHHHhcCCHHHHHH
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------------EQEITALLKVSAGTGRVEKVYQ 180 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------------e~~y~~ll~~~~~~g~~~~a~~ 180 (295)
+++|.+..+++... ..+ .-|..+|.-.-..=...|+.+.|.. +--|-+.|+.=...|.+++|..
T Consensus 451 ~efDRcRkLYEkfl-e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 451 REFDRCRKLYEKFL-EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred hhHHHHHHHHHHHH-hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 99999999999998 766 4567777777776677888888877 2237888888888999999999
Q ss_pred HHHHHHHc
Q 048764 181 YLQKLRST 188 (295)
Q Consensus 181 ll~~m~~~ 188 (295)
++.++.+.
T Consensus 529 LYerlL~r 536 (677)
T KOG1915|consen 529 LYERLLDR 536 (677)
T ss_pred HHHHHHHh
Confidence 99998764
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.54 E-value=8.3 Score=31.42 Aligned_cols=93 Identities=13% Similarity=0.274 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-------
Q 048764 86 FRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------- 158 (295)
Q Consensus 86 ~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------- 158 (295)
.+....+.+.|++|+...|..+|+.+.+.|.+ ..+..+. .+++-||.......|-.+.... ..+.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qll-q~~Vi~DSk~lA~~LLs~~~~~--~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLL-QYHVIPDSKPLACQLLSLGNQY--PPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHH-hhcccCCcHHHHHHHHHhHccC--hHHHHHHHHHHH
Confidence 45555666789999999999999999999985 4556666 7888999988887775554432 22333
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...|..+++.+...|++-+|..+.+..
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 225889999999999999999998875
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=9.1 Score=36.16 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=48.9
Q ss_pred CCCHHhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 55 RLSLHHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE----ALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 55 ~pd~~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~----~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+.+...++.+-.+ +..++ +++|...|+.-.+. .||. .+|..+-.+|++.|+.++|++.|++..
T Consensus 72 P~~a~a~~NLG~AL~~lGr---------yeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGR---------VKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345666666664 44444 99999999997764 4663 469999999999999999999999887
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.36 E-value=9.8 Score=35.98 Aligned_cols=112 Identities=14% Similarity=0.242 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-hhhhcCCCCCcccHH-HHHHHHHhcCCHHHhhc
Q 048764 82 LRHGFRVFDQMLSNN-VIPNEALVTSVARLAASKKDSDYAFELIKR-MNNEFNVVPRLRTYD-PALFCFCENLEAQKAYE 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~-M~~~~gi~P~~~ty~-~ll~~~~~~g~~~~A~~ 158 (295)
++.|+.+|-+..+.| +.|++..|+++|.-++. |++..|..+|+- |+ .. ||.-.|- -.+.-+..-++-+.|..
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~-~f---~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL-KF---PDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH-hC---CCchHHHHHHHHHHHHhCcHHHHHH
Confidence 555555555555555 34555555555554443 344555555543 22 21 3332221 23333333343333332
Q ss_pred --------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 159 --------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 159 --------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
.+.|..+|+.=...|++.-++.+=++|.+. .|-+.+..+.
T Consensus 488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF 541 (660)
T COG5107 488 LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVF 541 (660)
T ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHH
Confidence 234888888888889999999888888773 4555554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.22 E-value=9.4 Score=36.88 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHh--CCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHH
Q 048764 81 ALRHGFRVFDQMLS--NNVI----PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 81 ~~~~a~~lf~~M~~--~g~~----pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~ 154 (295)
.+.+|...|+.-+. ..+. .-+.+++.|=++|-+.+.+++|+..|+.-. ... .-|..||+++--.|...|+++
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL-~l~-~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL-LLS-PKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH-HcC-CCchhHHHHHHHHHHHhcChH
Confidence 48889888887652 1111 234567888888999999999999999876 332 456667777666666666666
Q ss_pred Hhhc
Q 048764 155 KAYE 158 (295)
Q Consensus 155 ~A~~ 158 (295)
.|..
T Consensus 507 ~Aid 510 (611)
T KOG1173|consen 507 KAID 510 (611)
T ss_pred HHHH
Confidence 6643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.9 Score=28.49 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
-..+.+.|++++|...|++..+.. +-+...+..+-..+...+ .+++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQG--------RYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Confidence 346788999999999999999876 224444444444554444 29999999999876
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.58 E-value=14 Score=32.82 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHh-cCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcC
Q 048764 38 DLATAISLYESALS-LNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS-NNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 38 ~~~~A~~lf~~m~~-~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~ 114 (295)
.+.+|+.+|+..-- +.+--|......||+ +-..... .+..-.++.+-+.. .+-.++..+...+|..++..
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~-------~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~ 215 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT-------KLNALYEVVDFLVSTFSKSLTRNVIISILEILAES 215 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc-------chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhc
Confidence 35566666663221 345566677777777 3332221 13333333333332 44557777777777777777
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcc
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQK-----LRSTV 189 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~-----m~~~~ 189 (295)
+++..-+++.+.-....+-.-|.+.|..+|+. ....|+..-+..++.+ +.+.+
T Consensus 216 ~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~l----------------------i~~sgD~~~~~kiI~~GhLLwikR~~ 273 (292)
T PF13929_consen 216 RDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKL----------------------IVESGDQEVMRKIIDDGHLLWIKRNN 273 (292)
T ss_pred ccHHHHHHHHHHhcccCCCCCCCchHHHHHHH----------------------HHHcCCHHHHHHHhhCCCeEEeeecC
Confidence 77777777777665222444566665555554 5555554444444433 56677
Q ss_pred cCCChhHHHHHHHHHhc
Q 048764 190 RCVNEETGKIIEDWFSG 206 (295)
Q Consensus 190 ~~p~~~t~~~l~~~~~~ 206 (295)
+..++.....|.++|..
T Consensus 274 V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 274 VDVTDELRSQLSELFKK 290 (292)
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 78888888888888843
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=89.42 E-value=11 Score=34.04 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------HH-HHHHHHHHHHh
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------EQ-EITALLKVSAG 171 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e~-~y~~ll~~~~~ 171 (295)
....+.+..|.-+...|+...|..+..+.+ .||-+-|..-|.+|+..+++++-.. .| -|..++..|.+
T Consensus 175 f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 175 FVGLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLK 249 (319)
T ss_pred hhcCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 344567777888888999999998888777 7999999999999999999998776 22 29999999999
Q ss_pred cCCHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQK 184 (295)
Q Consensus 172 ~g~~~~a~~ll~~ 184 (295)
.|+..+|..++.+
T Consensus 250 ~~~~~eA~~yI~k 262 (319)
T PF04840_consen 250 YGNKKEASKYIPK 262 (319)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999888
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=89.34 E-value=6 Score=30.33 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc---H-HHHHHHHHhcCCHH
Q 048764 81 ALRHGFRVFDQMLSNNVIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT---Y-DPALFCFCENLEAQ 154 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t---y-~~ll~~~~~~g~~~ 154 (295)
..++|..+|++-...|...+ ...+-.+-+.+-.-|++++|..+|++.. .. .|+... . ..+--++...|+.+
T Consensus 16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~-~~--~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL-EE--FPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH--CCCccccHHHHHHHHHHHHHCCCHH
Confidence 38899999999999887654 3345556677788999999999999887 33 244211 1 11112445566666
Q ss_pred Hhhc
Q 048764 155 KAYE 158 (295)
Q Consensus 155 ~A~~ 158 (295)
+|..
T Consensus 93 eAl~ 96 (120)
T PF12688_consen 93 EALE 96 (120)
T ss_pred HHHH
Confidence 6644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=89.26 E-value=3.9 Score=40.87 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 141 DPALFCFCENLEAQKAYE----EQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
-.+-.-|-..|++..|.. ..+|.+-++.|...+.+++|+++-+
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence 334445555666666655 3457777777877777777776654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=6.2 Score=37.23 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc----cHHHHHHHHHhcCCHHHhhc
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR----TYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~----ty~~ll~~~~~~g~~~~A~~ 158 (295)
+.+...|+.+-.+|.+.|++++|+..|+.-. . +.|+.. +|..+-.+|...|+.++|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rAL-e--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETAL-E--LNPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h--hCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567889999999999999999999999966 3 468854 58899999999999999988
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=21 Score=36.90 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=91.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhC----CC-CCC
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSN----NV-IPN 100 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~----g~-~pd 100 (295)
..+...|++++|...+++..+.--..+. ..++.+-.. ...++ +++|...+.+.... |- .+-
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---------~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---------LARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhhhcchHHH
Confidence 3456789999999999987753111121 122222222 33444 88898888887641 11 111
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCC--C-CcccHHHHHHHHHhcCCHHHhhc---------H----H-
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNN---EFNVV--P-RLRTYDPALFCFCENLEAQKAYE---------E----Q- 160 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~--P-~~~ty~~ll~~~~~~g~~~~A~~---------e----~- 160 (295)
..+++.+-..+...|+++.|..++++... ..+.. | ....+..+-..+...|+.+.|.. + .
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 24555666778889999999999887652 22321 1 12234444556677799998876 0 0
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 ---EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ---~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.+..+-..+...|+.++|...+.+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 133344456678999999988887744
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.26 E-value=5.5 Score=33.45 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh--hcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 83 RHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN--EFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 83 ~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~--~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
+.|++.|-.+...+.--+....-+|..-|. ..|.+++..++....+ ..+=.+|...+.+|.+.|-+.|+.+.|+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777777766555555555555554 4567777777776653 2222566667777777777777777765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=88.24 E-value=16 Score=32.27 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS----LNFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~----~g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|...-..|-..+++++|...|....+ .+-+. -...|......+...+ +++|...|++... .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~---------~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGD---------PDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHHHHHhc
Confidence 788888888899999999999987642 22211 1233444444666665 5566666555433 3
Q ss_pred CCCCC--HHHHHHHHHHHHcC-CCHHHHHHHHHHhhh---hcCCCCC--cccHHHHHHHHHhcCCHHHhhc--H------
Q 048764 96 NVIPN--EALVTSVARLAASK-KDSDYAFELIKRMNN---EFNVVPR--LRTYDPALFCFCENLEAQKAYE--E------ 159 (295)
Q Consensus 96 g~~pd--~~ty~~li~~~~~~-g~~~~A~~l~~~M~~---~~gi~P~--~~ty~~ll~~~~~~g~~~~A~~--e------ 159 (295)
|- |+ ..++.-+-..|-.. |+++.|+++|++-.. ..| .|. ..++.-+...+.+.|+.++|.. +
T Consensus 108 G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 108 GR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred Cc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 32 33 33667777777777 899999888887652 223 222 2345666777888888888888 0
Q ss_pred -----------HHH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 160 -----------QEI-TALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 160 -----------~~y-~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
..| .++| ++...|+...|...+++....
T Consensus 186 l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred hcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 012 3333 455578888999999887653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.15 E-value=17 Score=35.35 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLN 53 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g 53 (295)
.=+-|+.+.+.+++++|+..-++....+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~ 42 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV 42 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC
Confidence 3344677777888888888888877665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=87.98 E-value=15 Score=30.75 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=71.2
Q ss_pred HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 58 LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV--IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
...|..-...+..++ +.+|.+.|+.+...-. +--....-.++.++-+.|+++.|...|+.....+.-.|
T Consensus 6 ~~lY~~a~~~~~~g~---------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 6 EALYQKALEALQQGD---------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHHHCT----------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 345666666777777 9999999999987422 12234455678889999999999999999873443334
Q ss_pred CcccHHHHHHHHHhcCCHHHh----------hc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 136 RLRTYDPALFCFCENLEAQKA----------YE-EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 136 ~~~ty~~ll~~~~~~g~~~~A----------~~-e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
. .-|.-.+.+.+.-...... .+ ...|..+|+-|-......+|...+..+++
T Consensus 77 ~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 77 K-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred c-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 3 3455555555543333222 11 22356666666666666666555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.70 E-value=39 Score=36.55 Aligned_cols=124 Identities=13% Similarity=0.045 Sum_probs=70.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 20 ~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
+.|-..|..|..-|.+....++|-++|++|.+.- .-....|...+. +..+.. .+.|..++..-++. -
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne---------~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNE---------AEAARELLKRALKS--L 1594 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccH---------HHHHHHHHHHHHhh--c
Confidence 3444477777777777777777777777776442 234456666666 444444 55566666554442 1
Q ss_pred CC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 99 PN---EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 99 pd---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
|- .-...-.+..-.+.||.+.+..+|+... ..- .-..-.|+..|+.=.+.|+.+.+.
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll-~ay-PKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLL-SAY-PKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHH-hhC-ccchhHHHHHHHHHHccCCHHHHH
Confidence 21 2223333444455677777777777665 221 123345777777777777666543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.55 E-value=3 Score=37.33 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc
Q 048764 38 DLATAISLYESALSLN---FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EALVTSVARLAAS 113 (295)
Q Consensus 38 ~~~~A~~lf~~m~~~g---~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~ 113 (295)
.+..|..+|+.|++.. ..++-+++.+||..-.... ..-.+.+...|+.+...|...+ ..-+.+-|-+++.
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~------e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~ 191 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDV------EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSE 191 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccH------HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcc
Confidence 3577999999999765 3577788888887522211 1126789999999999898654 3234444434433
Q ss_pred -CCC--HHHHHHHHHHhhhhcCCCCCcccHHHH
Q 048764 114 -KKD--SDYAFELIKRMNNEFNVVPRLRTYDPA 143 (295)
Q Consensus 114 -~g~--~~~A~~l~~~M~~~~gi~P~~~ty~~l 143 (295)
..+ ...+.++++.++ +.|+++....|..+
T Consensus 192 ~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~l 223 (297)
T PF13170_consen 192 GDDQEKVARVIELYNALK-KNGVKIKYMHYPTL 223 (297)
T ss_pred ccchHHHHHHHHHHHHHH-HcCCccccccccHH
Confidence 222 447899999999 99999998886643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.5 Score=40.62 Aligned_cols=119 Identities=10% Similarity=0.004 Sum_probs=84.6
Q ss_pred CCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 18 TNPNPET--NFLISLQSCTKSKDLATAISLYESALSL--NFRL----SLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 18 ~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~--g~~p----d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
....|+. .++-+=-.....+.+.+|...|...... .+-+ -..+++.|=+.|.+.+ .+++|+.-|
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~--------~~~eAI~~~ 478 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN--------KYEEAIDYY 478 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh--------hHHHHHHHH
Confidence 3444443 5555555555677889999999876511 1111 2234555555777766 389999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
+.-+.. .+-|..||+++--.|...|+++.|.+.|++-. .+.||-.+-..+|..+.
T Consensus 479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHHHHH
Confidence 987663 24678899999999999999999999999855 78999988888877443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.90 E-value=30 Score=34.30 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh-----hcCCCCCcccHHHHHHHHHhcC-----
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN-----EFNVVPRLRTYDPALFCFCENL----- 151 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~-----~~gi~P~~~ty~~ll~~~~~~g----- 151 (295)
.+-+..+|..-++ +.| ..-+--|.-+++.+++++|-+.+..... ....+-+...|.-+-+-.++.-
T Consensus 154 Pets~rvyrRYLk--~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 154 PETSIRVYRRYLK--VAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 3445555555544 122 2356667777788888888777776542 1111334444444444333322
Q ss_pred -CHHHhhc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhH
Q 048764 152 -EAQKAYE----------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEET 196 (295)
Q Consensus 152 -~~~~A~~----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t 196 (295)
+++.-++ ..-|.+|-+.|.+.|.+++|.+++.+-......+..-|
T Consensus 230 lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt 285 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT 285 (835)
T ss_pred cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH
Confidence 3333333 22389999999999999999999999777665555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.63 E-value=24 Score=36.88 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHhcCCHHHhhc--------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 137 LRTYDPALFCFCENLEAQKAYE--------EQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 137 ~~ty~~ll~~~~~~g~~~~A~~--------e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
..||--+=.+|...+.+..|.- ..+..-|++.|-..|.+++...+++
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444444444444444444433 3446667777777777666655554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=86.23 E-value=14 Score=28.62 Aligned_cols=120 Identities=17% Similarity=0.092 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccH
Q 048764 61 FNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTY 140 (295)
Q Consensus 61 y~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty 140 (295)
...+|..+...+. .......++.+...+. .+...+|.+|..|++.. ....++.+.. .++.+..
T Consensus 10 ~~~vv~~~~~~~~--------~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~ 72 (140)
T smart00299 10 VSEVVELFEKRNL--------LEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDI 72 (140)
T ss_pred HHHHHHHHHhCCc--------HHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCH
Confidence 3455665554442 7888999999888773 78889999999999874 4455555552 2344555
Q ss_pred HHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcccCCChhHHHHHHHH
Q 048764 141 DPALFCFCENLEAQKAYE----EQEITALLKVSAGT-GRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 203 (295)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~-g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~ 203 (295)
..++..|.+.+..+.+.- ...|...++.+... ++.+.|.+++.+ .-++..|..+...
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~ 134 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKA 134 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHH
Confidence 567777777777665554 22244444444444 667777766665 2245566555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.11 E-value=7.9 Score=34.45 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=66.0
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHHhcCCHHH
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSAGTGRVEK 177 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~~~g~~~~ 177 (295)
+.+.+++.+|+..+.+-. . +.|+- +-|.-=-.+|++.|+.+.|.+ .+ .|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI-~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI-E--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH-h--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 356889999999999987 4 45654 445566789999999999988 22 38888888999999999
Q ss_pred HHHHHHHHHHcccCCChhHHHH
Q 048764 178 VYQYLQKLRSTVRCVNEETGKI 199 (295)
Q Consensus 178 a~~ll~~m~~~~~~p~~~t~~~ 199 (295)
|.+.|++-.+ +.|+-.+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 9999888655 6787777644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=86.08 E-value=2.5 Score=29.00 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=43.9
Q ss_pred HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 59 HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NNV-IPN-EALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+|+.+-..+...+ ++++|...|++..+ .|- .|+ ..+++.+-..|...|++++|++++++-.
T Consensus 6 ~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELG--------RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555555444444 29999999988765 221 233 5678888999999999999999998754
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=85.73 E-value=20 Score=31.60 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCC-HHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHh----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESAL----SLNFRLS-LHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLS---- 94 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~----~~g~~pd-~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~---- 94 (295)
.|......|-+. ++++|+..|++.. +.|-... ..++..+-.+|... + ++++|.+.|++-.+
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--------d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--------DYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHH
Confidence 455444444333 6667766666554 2332221 12333333355444 2 38888888877544
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC-----CCcc-cHHHHHHHHHhcCCHHHhhc
Q 048764 95 NNVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV-----PRLR-TYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 95 ~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~-----P~~~-ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|-+- -..++.-+...+.+.|++++|.++|++.. ..-+. ++.. .|-..+-++...||...|..
T Consensus 148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~-~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA-KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33111 13567788889999999999999999987 44332 2222 23334446667788877765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.51 E-value=20 Score=32.96 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=68.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 22 PETNFLISLQSCTKSKDLATAISLYESALSL---NFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~---g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
|+.-.|-+|- |.+.+++.+|..+..++.-- -...-.+++..+=. .-++.. +.-|...|+-.-+++.
T Consensus 285 PEARlNL~iY-yL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH---------lKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 285 PEARLNLIIY-YLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH---------LKIAQQFFQLVGESAL 354 (557)
T ss_pred hHhhhhheee-ecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH---------HHHHHHHHHHhccccc
Confidence 4444443333 55666666666665554210 01222234444433 222222 5555555544433333
Q ss_pred CCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------HH------HHH-
Q 048764 98 IPNEAL-VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------EQ------EIT- 163 (295)
Q Consensus 98 ~pd~~t-y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e~------~y~- 163 (295)
.-|.+. =-+|.+.+.-.-++|+.+-+++..+ .+-..-|...|| +.++++-.|...+|.+ .+ .|-
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 211111 1123333333344566666666665 554444444443 3455566666555555 11 133
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m 185 (295)
.|-++|.+.+...-|.+++-++
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhc
Confidence 3334455666666665555444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.22 E-value=18 Score=36.88 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 80 SALRHGFRVFDQMLSNNVIPNEALVTSVARLAA--SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~--~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
+++..|......+.+.. || ..|..++.++. +.|..++|..+++... ..+.. |..|..++-.+|.+.|..++|.
T Consensus 23 ~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALY-GLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhc-cCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 35888988888876643 55 44555666554 6899999999999887 55544 8899999999999999999998
Q ss_pred c-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh--hHHHHHHHHHhc
Q 048764 158 E-----------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE--ETGKIIEDWFSG 206 (295)
Q Consensus 158 ~-----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~--~t~~~l~~~~~~ 206 (295)
. +.....+..+|.|.+++.+....--+|-.. .|.. ..|.++.-.+.+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHh
Confidence 8 334678888899999888766655555442 3433 345555444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=85.13 E-value=2.1 Score=28.58 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
..+|..+-..+...|++++|+..|.+.. ..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAI-EL 32 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc
Confidence 4566666677777777777777777776 44
|
... |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.92 E-value=18 Score=34.54 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=85.0
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC-
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN- 95 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~- 95 (295)
...|+. .|--+=-+..|.+.+++++..|++.++. +|-.+..||..-....... +++.|.+.|+.-..-
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqq--------qFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQ--------QFDKAVKQYDKAIELE 492 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHH--------hHHHHHHHHHHHHhhc
Confidence 455666 4444444445778999999999999866 5666677777777444333 399999999976541
Q ss_pred ----CCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 96 ----NVIPNEALV--TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 96 ----g~~pd~~ty--~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++..+..++ -++|-.- -.+++..|..++..-. .. .|. ...|.+|-+.-...|++++|++
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~-e~--Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAI-EL--DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHH-cc--CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 121122221 1122111 3589999999999887 33 343 4679999999999999999988
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=19 Score=31.56 Aligned_cols=93 Identities=11% Similarity=-0.010 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc----ccHHHHHHHHHhcCCHHHhhc--------------HH-H
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL----RTYDPALFCFCENLEAQKAYE--------------EQ-E 161 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~ll~~~~~~g~~~~A~~--------------e~-~ 161 (295)
...|+.-+..+.+.|++++|...|+... .. -|+. ..+--+-..|...|+.++|.. .+ .
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl-~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFV-KK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4557777766677899999999999988 43 3554 255667778889999999988 01 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 198 (295)
+-.+...+...|+.++|..+++++.+. .|+.....
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHH
Confidence 333444566889999999999998774 45554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.76 E-value=13 Score=37.13 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC--------------------CCCcchHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT--------------------DPSLKDSALRH 84 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~--------------------~~~~~~~~~~~ 84 (295)
.|.-+|-.|+..|+..+|-.+..+-.+ -+||...|..|......... ......+++++
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~ 503 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE 503 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence 577788888888888888777766655 47777777776654333221 00011223444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc---HH
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE---EQ 160 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~---e~ 160 (295)
+.+.|+.-.+-+ +.-..||=.+=-+.-+.+++..|.+.|..-. -+.||- ..||.+-.+|.+.|+-.+|+. |.
T Consensus 504 ~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 504 ADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 444443322210 0122334333334445677888888887765 346765 469999999999999998888 22
Q ss_pred H---------HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 E---------ITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~---------y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
- |....-...+.|.+++|....++|..
T Consensus 580 lKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 580 LKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 1 33344456799999999999888754
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=84.70 E-value=18 Score=29.12 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=63.0
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHH
Q 048764 65 LYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL 144 (295)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll 144 (295)
-.++..++ +++|.++|+-...... -+..-|-.|--.+-..|++++|++.|.... ... .-|.+.|--+-
T Consensus 43 ~~ly~~G~---------l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~-~ddp~~~~~ag 110 (157)
T PRK15363 43 MQLMEVKE---------FAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHCCC---------HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCchHHHHHH
Confidence 33666777 8999999998876432 234445556666667899999999999877 555 34566777778
Q ss_pred HHHHhcCCHHHhhcHHHHHHHHHHH
Q 048764 145 FCFCENLEAQKAYEEQEITALLKVS 169 (295)
Q Consensus 145 ~~~~~~g~~~~A~~e~~y~~ll~~~ 169 (295)
.++...|+.+.|.. .|...|.-|
T Consensus 111 ~c~L~lG~~~~A~~--aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIK--ALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHH--HHHHHHHHh
Confidence 88889999888865 244444444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=84.59 E-value=53 Score=33.94 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC--C-CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS----LNFR--L-SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~----~g~~--p-d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~- 95 (295)
++..+-..+...|++++|...+++... .+.. + ....+..+-. ++..++ +++|...+.+....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~---------~~~A~~~~~~al~~~ 603 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR---------LDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHhHHhh
Confidence 445556667888999999999887653 2221 1 2233333333 445555 88888888876541
Q ss_pred -CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC-CCCCcccHH-----HHHHHHHhcCCHHHhhc--------
Q 048764 96 -NVIP--NEALVTSVARLAASKKDSDYAFELIKRMNNEFN-VVPRLRTYD-----PALFCFCENLEAQKAYE-------- 158 (295)
Q Consensus 96 -g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g-i~P~~~ty~-----~ll~~~~~~g~~~~A~~-------- 158 (295)
...+ ...++..+...+...|+++.|.+.+.... ... -......+. ..+..+...|+.+.|..
T Consensus 604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE-NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 1112 23445556667788999999999988875 321 011111111 11233344666666555
Q ss_pred ---HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 ---EQ-----EITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 ---e~-----~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.. .+..+-.++...|+.++|..++.+....
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 00 0234455566778888887777776543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=47 Score=34.52 Aligned_cols=130 Identities=9% Similarity=0.007 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
+-.+|-+.|+.++|..+|+++.+.. +-|+...|-+-+.++..+ +++|..++..-...
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~d---------L~KA~~m~~KAV~~------------- 178 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEED---------KEKAITYLKKAIYR------------- 178 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHH-------------
Confidence 3334444455555555555555444 334445555544433332 55555555544331
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCCcccH-HHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPRLRTY-DPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty-~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
|....++..+++++.++. .. .|+.+.+ --++.....+-....+ ...+-.|...|-...+++++..+|+.+.+
T Consensus 179 --~i~~kq~~~~~e~W~k~~-~~--~~~d~d~f~~i~~ki~~~~~~~~~--~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 179 --FIKKKQYVGIEEIWSKLV-HY--NSDDFDFFLRIERKVLGHREFTRL--VGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred --HHhhhcchHHHHHHHHHH-hc--CcccchHHHHHHHHHHhhhccchh--HHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 334445555555555555 22 2333222 2222211111000000 22255666778888899999999999876
Q ss_pred c
Q 048764 188 T 188 (295)
Q Consensus 188 ~ 188 (295)
.
T Consensus 252 ~ 252 (906)
T PRK14720 252 H 252 (906)
T ss_pred c
Confidence 4
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.22 E-value=1.9 Score=25.09 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+|+.|-+.|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999844
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.88 E-value=6.3 Score=34.90 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=50.0
Q ss_pred cHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cccCCChhHHHHHH
Q 048764 139 TYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRS-----TVRCVNEETGKIIE 201 (295)
Q Consensus 139 ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~-----~~~~p~~~t~~~l~ 201 (295)
++..++..+...|+++.+.. |+.|..|+.+|.+.|+...|...+++|.. .|+.|.+.++....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 44555556666666655555 66689999999999999999888888755 68999998888776
Q ss_pred HHHh
Q 048764 202 DWFS 205 (295)
Q Consensus 202 ~~~~ 205 (295)
..+.
T Consensus 235 ~~~~ 238 (280)
T COG3629 235 EILR 238 (280)
T ss_pred HHhc
Confidence 6653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.61 E-value=7.9 Score=39.29 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCCCCChhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048764 6 SANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSL 52 (295)
Q Consensus 6 ~~~~~~~~~~~~~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~ 52 (295)
-.+.+..|.-|+..+.|+.+=..+-......|.+++|+.+|.+-++.
T Consensus 783 m~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~ 829 (1416)
T KOG3617|consen 783 MKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY 829 (1416)
T ss_pred hhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445555556666666543333333345678889999998887754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.58 E-value=17 Score=35.43 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh--
Q 048764 25 NFLISLQSCTKSKDLATAISLYE--------SALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS-- 94 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~--------~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~-- 94 (295)
..=.+++.....|+++.|++++. ...+.+..|-.+.+ ++.++.+.++ -+.|-.++++-..
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~--------~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKD--------NDSASAVLDSAIKWW 447 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccC--------CccHHHHHHHHHHHH
Confidence 45556788888999999999999 66666667755544 4444444432 2234444443322
Q ss_pred CCCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc
Q 048764 95 NNVIPNEALVTSVARLAA----SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCEN 150 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~----~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~ 150 (295)
..-.+.....++++.-++ ++|+-++|..+++++. ..+ .+|..+...++.+|++.
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~-k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV-KFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH-HhC-CchHHHHHHHHHHHHhc
Confidence 111233355555555444 5899999999999999 655 68888888888888764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.47 E-value=8 Score=28.77 Aligned_cols=62 Identities=11% Similarity=0.227 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 83 RHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 83 ~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
=+.++-++.+-...+.|+..+..+.+++|-+-.|+..|.++|+..+.+.| +....|..+|+-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35666677777788899999999999999999999999999999884444 333377777764
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.28 E-value=8.2 Score=34.60 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=26.5
Q ss_pred CCCcHhHHHHHHHH-HHhcCC-HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC
Q 048764 19 NPNPETNFLISLQS-CTKSKD-LATAISLYESALSLNFRLSLHHFNALLYLCSNSAT 73 (295)
Q Consensus 19 ~~~p~~t~~~li~~-~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~ 73 (295)
+.+|...+++|+.- .++.|= +.-|..+|....... ..+.|++...++.+
T Consensus 161 Gt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~m 211 (412)
T KOG2297|consen 161 GTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKM 211 (412)
T ss_pred CCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcCh
Confidence 56677777776543 333332 233566776655321 34556665566554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.18 E-value=24 Score=28.92 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh---CCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL--HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS---NNVI 98 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~---~g~~ 98 (295)
.+..+-.-|++.|+.+.|++.|.++++....|.. ..+-.+|. +...++ +..+......... .|-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d---------~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD---------WSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHhccch
Confidence 8888999999999999999999999887655432 33444555 333444 5455444443322 3322
Q ss_pred CCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC--CCCCcccHHHHH
Q 048764 99 PNE----ALVTSVARLAASKKDSDYAFELIKRMNNEFN--VVPRLRTYDPAL 144 (295)
Q Consensus 99 pd~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g--i~P~~~ty~~ll 144 (295)
++. .+|..|... ..+++..|-++|-+.....+ --+.+.+|+-++
T Consensus 109 ~~~~nrlk~~~gL~~l--~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a 158 (177)
T PF10602_consen 109 WERRNRLKVYEGLANL--AQRDFKEAAELFLDSLSTFTSLQYTELISYNDFA 158 (177)
T ss_pred HHHHHHHHHHHHHHHH--HhchHHHHHHHHHccCcCCCCCchhhhcCHHHHH
Confidence 222 334444333 26799999888887762332 114445555433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.48 E-value=56 Score=32.65 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-
Q 048764 80 SALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE- 158 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~- 158 (295)
|++..|+.++.+.-+.+- -++..|-+-++....+..++.|..+|.+-. +..|..+.|---++.-.-.+..++|.+
T Consensus 598 gdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred CCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 458888888888776543 378889999999999999999999999876 356788887777777777788888887
Q ss_pred -HH------H----HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHH
Q 048764 159 -EQ------E----ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIE 201 (295)
Q Consensus 159 -e~------~----y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~ 201 (295)
|. + |-.+=..+-..++++.|.+.+.. -...+|+ ...|.++.
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~--G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ--GTKKCPNSIPLWLLLA 726 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh--ccccCCCCchHHHHHH
Confidence 11 1 33333344455556655544433 1234554 35565543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=82.41 E-value=6.9 Score=25.92 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=46.1
Q ss_pred HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhh
Q 048764 58 LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK-DSDYAFELIKRMN 128 (295)
Q Consensus 58 ~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g-~~~~A~~l~~~M~ 128 (295)
+.+|..+=. ++..++ +++|...|++..+.. +-+...|..+-.+|-..| ++++|+..|+.-.
T Consensus 3 a~~~~~~g~~~~~~~~---------~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGD---------YEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTH---------HHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 345555555 334444 999999999988853 236778888889999999 7999999998765
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.65 E-value=15 Score=32.55 Aligned_cols=65 Identities=6% Similarity=0.007 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCCCCCcccHHHHHHH
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN----EFNVVPRLRTYDPALFC 146 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi~P~~~ty~~ll~~ 146 (295)
.++.+...++++.... +-|+..|..||.+|.+.|+...|+..|+.+.. ..|+.|-..+.......
T Consensus 168 ~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 168 RADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 3677777777776643 46889999999999999999999999888763 47888888876665555
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=81.59 E-value=3.8 Score=23.79 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESAL 50 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~ 50 (295)
+|+.|=..|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999854
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.44 E-value=55 Score=31.86 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHH-hcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 048764 39 LATAISLYESAL-SLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEALVTSVARLAASKKD 116 (295)
Q Consensus 39 ~~~A~~lf~~m~-~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ty~~li~~~~~~g~ 116 (295)
+....++|-++. ..+..+|.-.+..|=-+|--.+ .+++|..-|+..+. +.| |..+||-|=..++...+
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~--------efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~ 479 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG--------EFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNR 479 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch--------HHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcc
Confidence 445556666665 5553344444444444333333 38999999999877 345 67889999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHh
Q 048764 117 SDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 117 ~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A 156 (295)
.++|..-|.+-. .++|+- +...-|--+|...|...+|
T Consensus 480 s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 480 SEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred cHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 999999999876 567874 3333334456677777666
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.19 E-value=48 Score=31.91 Aligned_cols=106 Identities=10% Similarity=-0.029 Sum_probs=72.8
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 83 RHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 83 ~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
++....+... ...|+..+......+++ ...|++..|+.++++.. ..+ ...+|+..+...+.-. + ...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i-~~~--~~~it~~~V~~~lg~~-~------~~~ 250 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI-VFT--DSKLTGVKIRKMIGYH-G------IEF 250 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH-HhC--CCCcCHHHHHHHhCCC-C------HHH
Confidence 3444545544 34788878777766665 45699999999999876 443 3457888776665211 1 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
+..++++....+....|+.++.+|.+.|..|..-...++
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567777766666667899999999999988876665554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.00 E-value=7.8 Score=28.54 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
.=++++-++.+....+.|+....++-+++|-+-.|+..|.++|+..+.+.| .+...|..+++-
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHHH
Confidence 345667777777788899999999999999999999999999998772333 344467776653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.73 E-value=42 Score=30.22 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=85.9
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 048764 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP 99 (295)
Q Consensus 20 ~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p 99 (295)
..|+.-+++.|....+..++.+|++++..-.+.. +.+....+.|-+.|.... .+..|-.-|+++-.. .|
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q--------~f~~AA~CYeQL~ql--~P 75 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQ--------EFALAAECYEQLGQL--HP 75 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhh--Ch
Confidence 3455677888888888889999998887665542 225555555555333322 155555555555332 23
Q ss_pred CHHHHHHH-HHHHHcCCCHHHHHHHHHHhhhhc------------------C----------CCCCcccHHHHHHH---H
Q 048764 100 NEALVTSV-ARLAASKKDSDYAFELIKRMNNEF------------------N----------VVPRLRTYDPALFC---F 147 (295)
Q Consensus 100 d~~ty~~l-i~~~~~~g~~~~A~~l~~~M~~~~------------------g----------i~P~~~ty~~ll~~---~ 147 (295)
-..-|.-- ...+-+++.+..|+++...|. +. + -.|..-+-..+++- .
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~-D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll 154 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLL-DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee
Confidence 33333211 122233444444444444443 21 0 00111111122221 1
Q ss_pred HhcCCHHHhhc---H----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 148 CENLEAQKAYE---E----------QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 148 ~~~g~~~~A~~---e----------~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
.+.|+.+.|.+ + ..||.-|.-| +.|+.+.|+++..+++++|+.-.+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 35677777666 1 1166555444 568889999999999888876544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.63 E-value=27 Score=33.21 Aligned_cols=133 Identities=12% Similarity=0.147 Sum_probs=78.3
Q ss_pred HhcCCHHHHHHHHH-HHHhcCCCCCHHhHHHHHHHHHcCCCC---------------CCcchHHHHHHHHHHHHHHhCCC
Q 048764 34 TKSKDLATAISLYE-SALSLNFRLSLHHFNALLYLCSNSATD---------------PSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 34 ~~~g~~~~A~~lf~-~m~~~g~~pd~~ty~~ll~~~~~~~~~---------------~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
.-.+++++++++.. .-.-..++ ....+.+++...+.+.. -+.++|.++.|.++-++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~------ 343 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE------ 343 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC------
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh------
Confidence 34567777666664 11112222 34466777744444421 01233345555544333
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-------HHHHHHHHHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------EQEITALLKVSA 170 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-------e~~y~~ll~~~~ 170 (295)
.++...|..|-+..-..|+++.|.+.|.... -|..|+--|.-.|+.++-.+ ...+|..+.++.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~ 413 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAAL 413 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3578899999999999999999999999887 57778888888888765444 223777777777
Q ss_pred hcCCHHHHHHHHHH
Q 048764 171 GTGRVEKVYQYLQK 184 (295)
Q Consensus 171 ~~g~~~~a~~ll~~ 184 (295)
-.|+.++..++|.+
T Consensus 414 ~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 414 LLGDVEECVDLLIE 427 (443)
T ss_dssp HHT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 77888887777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 295 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 3e-52 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-49 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 295 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 6e-04
Identities = 35/231 (15%), Positives = 60/231 (25%), Gaps = 82/231 (35%)
Query: 86 FRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145
R+F +LS E V + +Y F L+ + E R + ++
Sbjct: 65 LRLFWTLLSK---QEEM----VQKFVEEVLRINYKF-LMSPIKTE----QRQPSMMTRMY 112
Query: 146 CFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQ---YLQKLRSTVRCVNEETGKIIED 202
+ + Y + ++ A VS R++ + L +LR
Sbjct: 113 IEQRD----RLYNDNQVFAKYNVS----RLQPYLKLRQALLELRPA-------------- 150
Query: 203 WFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV----------VKRGSVDE-- 250
KN ++ G+ G GK V+ +
Sbjct: 151 -----------------KNVLI------DGVL--GSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 251 ---SGKCCSCGNQLA-----CVDIDDAETERFAQSVAALAMEQEVKANFSE 293
C S L ID T R S ++A
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 295 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.88 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.47 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.45 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.94 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.9 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.86 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.83 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.83 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.82 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.77 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.73 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.64 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.61 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.6 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.6 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.59 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.59 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.55 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.54 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.54 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.51 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.5 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.48 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.42 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.42 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.41 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.39 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.36 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.34 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.31 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.29 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.29 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.29 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.24 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.23 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.19 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.16 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.15 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.12 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.11 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.03 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.03 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.99 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.99 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 97.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 97.89 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.78 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 97.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.75 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.72 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.71 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.63 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.43 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.38 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.28 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.27 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.23 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.19 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.19 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.19 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.16 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.16 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.16 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.15 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.08 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.08 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.08 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.06 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.04 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.01 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 96.99 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.98 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 96.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 96.89 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 96.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 96.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 96.83 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 96.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.8 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 96.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 96.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 96.73 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 96.72 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.71 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 96.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 96.68 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.68 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 96.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.65 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.57 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.54 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.53 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 96.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.39 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.39 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 96.37 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.3 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.27 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.23 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 96.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 96.2 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 96.19 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.13 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 95.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 95.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 95.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 95.95 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 95.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 95.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 95.65 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.59 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 95.58 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 95.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 95.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 95.21 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 95.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 95.02 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 94.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 94.82 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 94.77 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 94.71 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.59 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 94.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 94.46 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 94.31 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.22 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 94.16 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 94.16 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 93.82 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 93.79 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 93.69 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 93.29 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 93.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 93.16 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 93.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 92.8 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 92.69 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 92.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 92.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 91.93 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 91.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 91.72 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 91.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 91.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 91.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 91.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 90.95 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 89.83 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 89.2 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 87.95 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 87.92 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 87.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 87.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 86.64 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.21 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 84.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 83.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 81.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 80.25 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.12 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-56 Score=421.19 Aligned_cols=292 Identities=45% Similarity=0.787 Sum_probs=262.6
Q ss_pred CCCCCCCCChhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-CCCcchHH
Q 048764 3 NTTSANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-DPSLKDSA 81 (295)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~~~~~~~~ 81 (295)
.+++..+.++.+++....+|+..++.+|++|+|.|++++|+++|++|++.|++||.+|||+||++|+..+. ....+.+.
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 35667777888888888889999999999999999999999999999999999999999999999987663 34566778
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
+++|.++|++|...|+.||.+|||+||++|++.|++++|+++|++|. ..|+.||.+|||+||.+|++.|++++|.+
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc---cccCCcccchhHHHHHHHh
Q 048764 159 ----------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG---QKVNGVSCDLGLVKNAVLK 225 (295)
Q Consensus 159 ----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~---~~~g~~~~~~~~v~~~~~~ 225 (295)
..+|++||++|++.|++++|+++|++|++.++.|+..|+.+|+.||++ ...|...|++..+.+.+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~ 244 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVS 244 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhHhc
Confidence 445999999999999999999999999999999999999999999998 6678889999999999999
Q ss_pred cCCccccCCCccccceEEeeeeeCCCCCcCcCCCeeeEeeCChHHHHHHHHHHHHHHHhHHHhhccCcCC
Q 048764 226 NGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSESQ 295 (295)
Q Consensus 226 ~g~~~~~~~w~~~~~w~~~~~~v~~~g~C~~c~~~l~~~~l~~~e~~~~~~~i~~~~~~~~~~~~~~~f~ 295 (295)
.|++|++++|++.++|.+..+.|+..|.|+.|+.+|.+|+|+++|++.|++.|.++|++++++.+|++||
T Consensus 245 ~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~ 314 (501)
T 4g26_A 245 GGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQ 314 (501)
T ss_dssp HTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998885
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=222.95 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=137.6
Q ss_pred hhcCCCCcHh-HHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHH
Q 048764 15 KRKTNPNPET-NFLISLQSCTKSKD---------LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRH 84 (295)
Q Consensus 15 ~~~~~~~p~~-t~~~li~~~~~~g~---------~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~ 84 (295)
+++.+..|+. |||+||.+|++.+. ++.|+++|++|.+.|+.||.+|||+||++|.+.+. +++
T Consensus 52 M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~--------~~~ 123 (501)
T 4g26_A 52 ARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDD--------PEM 123 (501)
T ss_dssp HHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC--------HHH
T ss_pred HHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC--------HHH
Confidence 4556788887 99999999998765 78999999999999999999999999996655553 999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------ 158 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------ 158 (295)
|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|. ..|+.||..||++||.+|++.|++++|++
T Consensus 124 A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999998
Q ss_pred -------HHHHHHHHHHHHhc
Q 048764 159 -------EQEITALLKVSAGT 172 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~ 172 (295)
+.+|+.|+..|+..
T Consensus 203 ~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 203 DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTSSBCHHHHHHHHHHHHSH
T ss_pred HhCCCcCHHHHHHHHHHHhcC
Confidence 45699999999864
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-23 Score=202.95 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESAL---SLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~---~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
|||++|++||+.|++++|+.+|++|. ..|+.||++|||+||+ +|..+. +++|.++|++|.+.|+.||
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~---------~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA---------FKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC---------HHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999886 4589999999999999 666666 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 101 EALVTSVARLAASKKDS-DYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~-~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++|||+||+++|+.|+. ++|.++|++|. ..|+.||.+||+++|.++.+.+-++....
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 99999999999999985 78999999999 99999999999999999888876666555
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=173.04 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=94.2
Q ss_pred CCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 56 LSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS---NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 56 pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~---~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
--..|||+||+ +|..+. +++|.++|.+|.+ .|+.||++|||+||+|||+.|++++|.++|++|. ..
T Consensus 125 ~~~~TynaLIdglcK~G~---------leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQ---------LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DA 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HT
T ss_pred hHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-Hc
Confidence 34579999999 555555 9999999998864 5899999999999999999999999999999999 99
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 132 NVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGR-VEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 132 gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~-~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
|+.||.+|||+||++ +|+.|+ .++|.++|++|.+.|+.||..|++.+
T Consensus 195 G~~PDvvTYntLI~g----------------------lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~l 242 (1134)
T 3spa_A 195 GLTPDLLSYAAALQC----------------------MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242 (1134)
T ss_dssp TCCCCHHHHHHHHHH----------------------HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSC
T ss_pred CCCCcHHHHHHHHHH----------------------HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccc
Confidence 999999996665554 566665 35677888888888888888777743
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-12 Score=122.60 Aligned_cols=170 Identities=9% Similarity=-0.048 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------------CCCHHhHHHHHHHHHcC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF---------------------------------RLSLHHFNALLYLCSNS 71 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~---------------------------------~pd~~ty~~ll~~~~~~ 71 (295)
+|+.++..|.+.|++++|+.+|++|.+.+. +.+..+|+.+..+|...
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Confidence 788888888888888888888888775431 23445555555533333
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC
Q 048764 72 ATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENL 151 (295)
Q Consensus 72 ~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g 151 (295)
+ .+++|.++|++|.+.. +.+..+|+.++.+|.+.|++++|+++|++|. ..+ .++..+|+.++.+|.+.|
T Consensus 387 g--------~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 387 N--------KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp T--------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT-TTCSHHHHHHHHHHHHHT
T ss_pred c--------cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHcC
Confidence 3 3888888888887632 2457788888888888888888888888887 544 357778888888888888
Q ss_pred CHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----ccCCC--hhHHHHHHHHHh
Q 048764 152 EAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST----VRCVN--EETGKIIEDWFS 205 (295)
Q Consensus 152 ~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~----~~~p~--~~t~~~l~~~~~ 205 (295)
++++|.. ...|+.+...|.+.|++++|..+|++|.+. +..|+ ..++..+...+.
T Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 8888877 223888888899999999999999988776 55666 456666666653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-12 Score=120.82 Aligned_cols=185 Identities=5% Similarity=-0.111 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.+|+.++..|.+.|++++|+.+|++|.+.. +.+..+|+.++.++...+. +++|.++|++|.+.+ +.+..+
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~-~~~~~~ 443 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGE--------HDQAISAYTTAARLF-QGTHLP 443 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTT-TTCSHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-ccchHH
Confidence 389999999999999999999999998753 4467899999995544442 999999999998754 357899
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------H-------------HHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------E-------------QEITA 164 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e-------------~~y~~ 164 (295)
|+.++.+|.+.|++++|.++|++|. ... ..+..+|+.+...|.+.|+.++|.. + ..|..
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSY-ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 9999999999999999999999998 554 3467889999999999999999988 1 13788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccc--hhHHHHHHHh
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCD--LGLVKNAVLK 225 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~--~~~v~~~~~~ 225 (295)
+..+|.+.|++++|..+++++.+.. ..+..++..+...+.. .++|+ ....++++..
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH----KKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988754 3356777777777744 44553 3344444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.94 E-value=8.6e-08 Score=87.68 Aligned_cols=166 Identities=11% Similarity=-0.014 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...|.+.|++++|+.+|+++.+. .+.+..+|..+...+...+. +++|...|+++.+.+ +.+..+|
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGK--------SKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-CCcHHHH
Confidence 8999999999999999999999999875 35578888888885554442 999999999998854 3468899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc----ccHHHHHH------------HHHhcCCHHHhhc----------
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRL----RTYDPALF------------CFCENLEAQKAYE---------- 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~ll~------------~~~~~g~~~~A~~---------- 158 (295)
..+...|.+.|++++|..+|+.+. .. .|+. ..+..+.. .+...|+.++|..
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVL-KS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-TS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998 53 4554 45555543 4888999999888
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
...+..+..++...|++++|..++.++.... ..+..++..+...+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 2237788888999999999999999987642 23345565555555
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.5e-07 Score=73.31 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+...|++++|+..|+++.+.. +.+...|..+...+...+. +++|...|+...+.. +.+..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 79 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKV--------NDKAQESFRQALSIK-PDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhC-CCChHHH
Confidence 88899999999999999999999988753 4456777777775555442 999999999988743 3467899
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 105 TSVARLAASK-KDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 105 ~~li~~~~~~-g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
..+...|... |++++|..+|+.+. ..+..|+ ...|..+...|...|+.++|.. ...+..+...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH-TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH-cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999 99999999999999 6333444 4678888889999999999988 222778888899
Q ss_pred hcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..|++++|..++++.....-..+...+..+...+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999987753213444454444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-07 Score=81.91 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
+|..+...+.+.|++++|+..|+++.+.. +-+...|..+-..+...+ .+++|...|++..... +-+..+|
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR--------IFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT--------CTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhC-cCCHHHH
Confidence 44455555555555555555555554432 122333333333333322 1556666666555422 2246778
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
+.+...|...|++++|...|+++. ... ..+..+|..+...|.+.|+.++|.. ...|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAI-ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 888888888888888888888887 433 2234567888888888888888877 22377788888888
Q ss_pred CCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
|++++|..+++++.+. .|+ ..++..+...+
T Consensus 319 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEV--FPEFAAAHSNLASVL 349 (388)
T ss_dssp TCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 8888888888888663 343 34555555555
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-07 Score=77.78 Aligned_cols=168 Identities=11% Similarity=0.058 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+.+|+++.+.. +.+...+..+...+...+. +++|..+|++..+.. +.+..+|
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 108 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEME--------PKLADEEYRKALASD-SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC-cCcHHHH
Confidence 78888899999999999999999998764 4466777777775555442 999999999988753 3477899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
..+...|...|++++|.++|+++. ..+..| +...|..+...|...|+.++|.. ...|..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 999999999999999999999998 644456 45667888889999999999988 2237788888999
Q ss_pred cCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
.|++++|..++.+..... ..+...+..+...+
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLA 219 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 999999999999987632 22344455554444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.7e-07 Score=77.92 Aligned_cols=166 Identities=12% Similarity=0.033 Sum_probs=125.0
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
.+|+. ++..+...+.+.++.++|+..|+++...+..|+...+..++. ++...+. +++|.+.|+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~--------~~~Al~~l~~------ 126 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN--------PDAALRTLHQ------ 126 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC--------HHHHHHHHTT------
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHhC------
Confidence 34444 888899999999999999999999998877676666666654 4444442 9999999987
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH---HHHHHHHhcCCHHHhhc------------HHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD---PALFCFCENLEAQKAYE------------EQEI 162 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~---~ll~~~~~~g~~~~A~~------------e~~y 162 (295)
+.+..++..+...|.+.|++++|...|+.+. ... |+...++ .++..+...|+.++|.. ...|
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~ 203 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQ-DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL 203 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence 5788899999999999999999999999998 553 7643221 23334445588998888 1227
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
+.+-.++.+.|++++|...|++.... .|+ +.++..+...+
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 88888899999999999999997764 454 44554444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.7e-07 Score=76.12 Aligned_cols=158 Identities=9% Similarity=0.020 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~t 103 (295)
.|..+...|.+.|++++|+.+|+++.+.. +.+...+..+...+...+. +++|.++|+++...+..| +...
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~ 143 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPERSRV 143 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHhCccCcccHHH
Confidence 88888899999999999999999988764 3466777777775554442 999999999998854555 5678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
|..+...|...|++++|..+|++.. ... ..+...|..+...|...|+.++|.. ...+..+...+..
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSL-RLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 8899999999999999999999988 544 3356778899999999999999988 2237778888999
Q ss_pred cCCHHHHHHHHHHHHHcccCCChh
Q 048764 172 TGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.|+.++|..+++++.+. .|+..
T Consensus 222 ~g~~~~A~~~~~~~~~~--~p~~~ 243 (252)
T 2ho1_A 222 FEDRDTAASYGLQLKRL--YPGSL 243 (252)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTSH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCH
Confidence 99999999999999774 35433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-07 Score=83.69 Aligned_cols=156 Identities=10% Similarity=0.020 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|.++.... +-+..++..+...+...+. +++|...|+++.+.+ +.+..+|
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGL--------IDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTC-SSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CCCHHHH
Confidence 78888899999999999999999987653 3457788888885444442 999999999998854 2357789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
+.+...+.+.|++++|..+|+++. ... .++..+|+.+...+.+.|+.++|.. ...|..+...+.+.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTAL-RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999998 553 5677889999999999999999988 22388899999999
Q ss_pred CCHHHHHHHHHHHHHcccCCCh
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
|++++|...++++.+ ..|+.
T Consensus 353 g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 353 GKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp TCCHHHHHHHHHHHT--TCTTC
T ss_pred CCHHHHHHHHHHHHh--hCCCC
Confidence 999999999999986 35543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.4e-07 Score=82.92 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-H-
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-E- 101 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~- 101 (295)
..|..+...|.+.|++++|+..|+++.+.+ +.+...+..+..++...+. +++|...|+++.+.. |+ .
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~--~~~~~ 129 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK--------LDEAEDDFKKVLKSN--PSENE 129 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSC--CCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC--CCChh
Confidence 389999999999999999999999998764 4457788888885555443 999999999998743 54 3
Q ss_pred --HHHHHHHHH------------HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------
Q 048764 102 --ALVTSVARL------------AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------- 158 (295)
Q Consensus 102 --~ty~~li~~------------~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------- 158 (295)
.++..++.. +...|++++|..+|+.+. ... ..+...+..+...|.+.|+.++|..
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL-EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 566666544 888999999999999998 544 3467789999999999999999988
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 159 ---EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 159 ---e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
...|..+...+...|++++|..+++++... .|+..
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 223888999999999999999999999753 45443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-06 Score=69.45 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...+. +++|...|++..+.. +.+..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 79 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGA--------VDRGTELLERSLADA-PDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 77888888999999999999999887543 3466777777775554442 999999999987753 3567889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...+...|++++|.++|+... ... ..+...+..+...|...|+.++|.. ...|..+...+...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVA-EAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-hcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence 999999999999999999999988 553 3456778888889999999999888 12377788888999
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
|++++|..++++....
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999987653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.6e-07 Score=74.41 Aligned_cols=167 Identities=8% Similarity=0.002 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+...+...+. +++|...|++..+.. +.+..+|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 94 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNE--------LERALAFYDKALELD-SSAATAY 94 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-CcchHHH
Confidence 67777777888888888888888887642 3456666666664444442 888888888877643 2467778
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...|...|++++|..+|+++. ... ..+...|..+...|...|+.++|.. ...+..+...+...
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKAL-RAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 888888888888888888888877 543 3355667777788888888888877 12266677778888
Q ss_pred CCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
|++++|..++.+..... ..+..++..+...+
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTY 203 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 88888888888876642 12234454444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-06 Score=69.32 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHhCCCCCC-H
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLSNNVIPN-E 101 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~ 101 (295)
..|..+...|...|++++|+.+|+++.+.. +.+..++..+...+... +. +++|...|+.+.+.+..|+ .
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~ 113 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNR--------PAESMAYFDKALADPTYPTPY 113 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCC--------HHHHHHHHHHHHTSTTCSCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHcCcCCcchH
Confidence 388889999999999999999999998763 44667777777755555 53 9999999999988433344 6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HH-----HHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQ-----EITALLKV 168 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~-----~y~~ll~~ 168 (295)
.+|..+...+...|++++|..+|+++. ... ..+...+..+...|.+.|+.++|.. .+ .+..+...
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSL-AAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI 191 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 788999999999999999999999998 543 2346778889999999999999988 22 26667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 169 SAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
+...|+.+.|..+++.+... .|+....
T Consensus 192 ~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 192 AKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 88999999999999998753 4554433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-06 Score=71.54 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...+. +++|...|+++.+.. +.+..+|
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 128 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEM--------YKEAKDMFEKALRAG-MENGDLF 128 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHT-CCSHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 88888999999999999999999988763 4466777777775554442 999999999998743 3567889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...+...|++++|..+++++. ... ..+...|..+...|...|+.++|.. ...|..+...+...
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 206 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAV-ELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 999999999999999999999988 543 3456778889999999999999988 22377888889999
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
|+.++|...+++..+.
T Consensus 207 ~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 207 ENREKALEMLDKAIDI 222 (243)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcc
Confidence 9999999999998773
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-08 Score=94.08 Aligned_cols=151 Identities=10% Similarity=-0.054 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.+|..+..++.+.|++++|+..|.. .+|..+|..+++.|...+ .+++|...++...+. .++..+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g--------~~EeAi~yl~~ark~--~~~~~i 96 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSG--------NWEELVKYLQMARKK--ARESYV 96 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHh--Cccchh
Confidence 4999999999999999999999965 367889999999666555 389999966665553 466788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhcCCHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----EQEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~g~~~~a~ 179 (295)
.+.++.+|++.|+++++.++|+ .|+..+|..+...|...|..++|.. .+.|..|..++.+.|++++|.
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHH
Confidence 9999999999999988877763 3777799999999999999999888 556999999999999999999
Q ss_pred HHHHHHHHcccCCChhHHHHHHHHH
Q 048764 180 QYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 180 ~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
+.+.++ .++.+|..+...+
T Consensus 169 ea~~KA------~~~~~Wk~v~~aC 187 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFAC 187 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHH
T ss_pred HHHHHc------CCchhHHHHHHHH
Confidence 999987 2577787665544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.61 E-value=8.4e-06 Score=72.13 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-C-------------C---------------
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-D-------------P--------------- 75 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~-------------~--------------- 75 (295)
.|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...+. + +
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 178 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh
Confidence 66666677777777777777777766553 3355566666554433322 0 0
Q ss_pred ------------CcchHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHH
Q 048764 76 ------------SLKDSALRHGFRVFDQMLSNNVI-PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDP 142 (295)
Q Consensus 76 ------------~~~~~~~~~a~~lf~~M~~~g~~-pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ 142 (295)
....|.+++|..+|+++.+.... ++..+|..+...|...|++++|..+|+++. ... ..+..+|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-~~~~~~~~~ 256 (368)
T 1fch_A 179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL-SVR-PNDYLLWNK 256 (368)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHH
T ss_pred hcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCCHHHHHH
Confidence 00224455666666666553211 157888888999999999999999999887 543 234567888
Q ss_pred HHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 143 ALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 143 ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+...|...|+.++|.. ...|..+-..+.+.|++++|...+.+....
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888899999988887 223777888888899999999999887664
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-06 Score=73.35 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=134.2
Q ss_pred CCCcHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 19 NPNPET---NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 19 ~~~p~~---t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
...|+. ..-.+...|...|+++.|+..++. .-+|+..++..+..++...+. .++|.+.|+++...
T Consensus 27 ~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~--------~~~A~~~l~~ll~~ 94 (291)
T 3mkr_A 27 PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR--------RDAIVAELDREMSR 94 (291)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT--------HHHHHHHHHHHHHS
T ss_pred cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc--------HHHHHHHHHHHHhc
Confidence 345554 345567899999999999987654 256788888888886666653 99999999999988
Q ss_pred CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HHH--H--
Q 048764 96 NVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQE--I-- 162 (295)
Q Consensus 96 g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~~--y-- 162 (295)
++.|+ ...+..+-..+...|++++|+++|+. ..+...+..+...|.+.|+.++|.. .|+ .
T Consensus 95 ~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 167 (291)
T 3mkr_A 95 SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167 (291)
T ss_dssp CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence 76564 55566666899999999999999987 3567789999999999999999988 111 1
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccc--hhHHHHHHHhcC
Q 048764 163 --TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCD--LGLVKNAVLKNG 227 (295)
Q Consensus 163 --~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~--~~~v~~~~~~~g 227 (295)
.+++..+...|++++|..+|+++... ...+...+..+-..+.. .++|+ ...+++++....
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence 23445555669999999999999886 23344555555444422 44553 345666666544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-06 Score=77.40 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN---- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd---- 100 (295)
.|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...+ .+++|...|+++.+.. |+
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~--p~~~~~ 169 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTS--------HQQDACEALKNWIKQN--PKYKYL 169 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC--HHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccc--------cHHHHHHHHHHHHHhC--ccchHH
Confidence 66666677777777777777777666542 334556666666444333 2777777777776522 21
Q ss_pred -------HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCCcccHHHHHHHHHhcCCHHHhhc------------HH
Q 048764 101 -------EALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTYDPALFCFCENLEAQKAYE------------EQ 160 (295)
Q Consensus 101 -------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~ty~~ll~~~~~~g~~~~A~~------------e~ 160 (295)
..+++.+...+...|++++|..+|+++. ...- .++..+|..+...|...|+.++|.. ..
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA-HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHH-HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH-HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 2334445667777777888888777777 4321 1145677777777777787777777 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
.|..+..++...|++++|...+++.... .|+ ...+..+...+
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 2677777777778888887777777654 343 34444444444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-06 Score=74.10 Aligned_cols=166 Identities=11% Similarity=-0.007 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+...+...+. +++|...|++..+.. +.+..+|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENEN--------EQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 68888999999999999999999998764 4567888888885555442 999999999998753 3468899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-----------cccHHHHHHHHHhcCCHHHhhc--------------H
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-----------LRTYDPALFCFCENLEAQKAYE--------------E 159 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-----------~~ty~~ll~~~~~~g~~~~A~~--------------e 159 (295)
..+...|...|++++|..+|+++. ... |+ ...+..+...|.+.|+.++|.. .
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWI-KQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHccccHHHHHHHHHHHH-HhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 999999999999999999999988 432 33 2233445778889999999988 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 160 QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 160 ~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..|..+...+...|++++|..++++..... ..+..++..+-..+
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATL 257 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 237788888999999999999999987742 22345665555554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-06 Score=63.30 Aligned_cols=127 Identities=18% Similarity=0.187 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+ ..+. +++|..+|+++...+ +.+..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD---------YDEAIEYYQKALELD-PRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHC-CCchHH
Confidence 57778888999999999999999998764 34567777777744 4455 999999999998754 356788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYL 182 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll 182 (295)
|..+...+...|++++|..+|+++. ... |+ ... +..+...+...|+.++|..++
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~----------------------~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKAL-ELD--PRSAEA----------------------WYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH-HHC--TTCHHH----------------------HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-HhC--CCChHH----------------------HHHHHHHHHHHccHHHHHHHH
Confidence 9999999999999999999999998 543 32 222 344556677778888888888
Q ss_pred HHHHH
Q 048764 183 QKLRS 187 (295)
Q Consensus 183 ~~m~~ 187 (295)
.++..
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-06 Score=70.08 Aligned_cols=167 Identities=9% Similarity=-0.024 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC--CCCC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN--VIPN-- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g--~~pd-- 100 (295)
.|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-..+...+. +++|...|+...+.. ..|+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGE--------YETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCcccccchH
Confidence 78888899999999999999999998877 777888888885554442 999999999987632 2233
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC------------------------CCCC-cccHHHHHHHHHhcCCH
Q 048764 101 --EALVTSVARLAASKKDSDYAFELIKRMNNEFN------------------------VVPR-LRTYDPALFCFCENLEA 153 (295)
Q Consensus 101 --~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g------------------------i~P~-~~ty~~ll~~~~~~g~~ 153 (295)
..+|..+...|...|++++|...|++.. ... ..|+ ...|..+...|...|+.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 5889999999999999999999999988 532 2332 34677788888899999
Q ss_pred HHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 154 QKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 154 ~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
++|.. ...|..+-..+...|++++|...+.+.... .|+ ...+..+...+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Confidence 99988 223778888899999999999999998774 344 44454444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-05 Score=69.91 Aligned_cols=104 Identities=8% Similarity=-0.065 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
+++|...|+...+.. +.+..+|..+...+...|++++|...|+... ... ..+...+..+...|...|+.++|..
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAA-QLM-KGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hhc-cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555432 1234455555556666666666666666555 332 1223444555555566666665555
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 ---------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 ---------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...+..+...+...|++++|..++.+....
T Consensus 184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 122566666677777777777777776553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-05 Score=69.64 Aligned_cols=167 Identities=12% Similarity=0.010 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+...+...+. +++|...|+++.+.. +.+..+|
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-~~~~~~~ 135 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ--------ELLAISALRRCLELK-PDNQTAL 135 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 67788889999999999999999998764 4567778777775555442 999999999998754 3578899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcC-----------------------------------------------CCC--
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFN-----------------------------------------------VVP-- 135 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~g-----------------------------------------------i~P-- 135 (295)
..+...|...|++++|..+|+.+. ... +.|
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWL-RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc
Confidence 999999999999999999998876 322 112
Q ss_pred -CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHH
Q 048764 136 -RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIE 201 (295)
Q Consensus 136 -~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~ 201 (295)
+..+|..+...|.+.|+.++|.. ...|..+...+...|++++|..++++.... .|+ ...+..+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~ 292 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLG 292 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 35667778888888899888887 223778888888999999999999988764 343 34444444
Q ss_pred HHH
Q 048764 202 DWF 204 (295)
Q Consensus 202 ~~~ 204 (295)
..+
T Consensus 293 ~~~ 295 (368)
T 1fch_A 293 ISC 295 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-05 Score=68.57 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-------------------------------
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT------------------------------- 73 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~------------------------------- 73 (295)
.|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...+.
T Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 57 AWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH
Confidence 66667777777777777777777776552 3345555555554333221
Q ss_pred --------C--CCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHH
Q 048764 74 --------D--PSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPA 143 (295)
Q Consensus 74 --------~--~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~l 143 (295)
. .....|.+++|..+|+++.+.. +.+..++..+...|...|++++|..+|+++. ... ..+..+|..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l 212 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAV-ELR-PDDAQLWNKL 212 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhC-CCcHHHHHHH
Confidence 0 1234456777777777776643 2467888899999999999999999999987 543 3346678888
Q ss_pred HHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 048764 144 LFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 144 l~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~ 189 (295)
...|...|+.++|.. ...|..+...+...|++++|...+++.....
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 889999999999888 2237778888889999999999999887643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-06 Score=72.42 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=122.7
Q ss_pred CCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHH
Q 048764 18 TNPNPET--NFLISLQSCTKSKDLATAISLYESALSL-------NFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRV 88 (295)
Q Consensus 18 ~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-------g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l 88 (295)
....|+. +|..+-..|...|++++|+.+|+++.+. ..+....++..+-..+...+. +++|...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~ 91 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------YKDAANL 91 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHH
Confidence 3344544 8999999999999999999999998863 233345566666665554442 8899998
Q ss_pred HHHHHhC------CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc------CCCC-CcccHHHHHHHHHhcCCHH
Q 048764 89 FDQMLSN------NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 89 f~~M~~~------g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~------gi~P-~~~ty~~ll~~~~~~g~~~ 154 (295)
|++.... +- +....+|..+...|...|++++|..+|++.. .. +-.| ....|..+...|...|+.+
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 8887653 22 3346788999999999999999999999887 43 2223 3456778888999999999
Q ss_pred Hhhc------H--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 155 KAYE------E--------------QEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 155 ~A~~------e--------------~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+|.. . ..+..+-..+...|++++|..++.+...
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988 1 1167778889999999999999999876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=85.69 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCC--------------------CCcchHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATD--------------------PSLKDSALRH 84 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~--------------------~~~~~~~~~~ 84 (295)
+|..++..|.+.|++++|+..++..++. .+++.+.+.|+.+|.+.+.- .....|.+++
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTCC----------------CTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555555544433332 33344555555544443320 0011112666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------ 158 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------ 158 (295)
|...|..+ ..|..|+..+.+.|++++|.+.+..+. +..||..++.+|...|+++.|..
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~ 204 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV 204 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 66666654 256666666666666666666666552 45677777777777777777765
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
..+...++..|.+.|++++|..+|+.-.
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 2234567777888888888877777654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-05 Score=68.02 Aligned_cols=152 Identities=13% Similarity=0.023 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|+++.+.. +.+...+..+-..+...+. +++|...|++..+.. +.+..+|
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~ 196 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN--------SKLAERFFSQALSIA-PEDPFVM 196 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHhC-CCChHHH
Confidence 44455555555555555555555554432 1122233333333322221 555555555555432 2344555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcC--------CCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFN--------VVPRLRTYDPALFCFCENLEAQKAYE------------EQEITA 164 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~g--------i~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ 164 (295)
..+...+...|++++|..+|++.. ... ...+..+|..+...|...|+.++|.. ...|..
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 275 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDAL-EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA 275 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHH
Confidence 555555556666666665555554 210 01223455555555555666555555 111455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+-..+...|++++|...+++..+
T Consensus 276 la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 276 IGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHc
Confidence 55555555666666665555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.2e-06 Score=68.08 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC-
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLN--FRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN- 96 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g--~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g- 96 (295)
..|..+-..|...|++++|+..|+++.+.. ..|+ ..+|..+-..+...+. +++|...|++.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~ 110 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD--------LKKTIEYYQKSLTEHR 110 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhcCc
Confidence 478888899999999999999999987543 2222 4667777775555443 788888888776621
Q ss_pred -----------------------CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC
Q 048764 97 -----------------------VIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLE 152 (295)
Q Consensus 97 -----------------------~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~ 152 (295)
..| +...|..+...+...|++++|...|++.. ... ..+..+|..+...|.+.|+
T Consensus 111 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMS 188 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHhCC
Confidence 222 45678888999999999999999999998 544 3456788899999999999
Q ss_pred HHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 AQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 ~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|+.++|...+++..+.
T Consensus 189 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999998 223778888899999999999999997664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-05 Score=60.49 Aligned_cols=151 Identities=12% Similarity=0.097 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+=..|.+.|++++|+..|++..+.. +-+..+|..+-..+...+. +++|...+....... +-+...+
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~-~~~~~~~ 76 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGL--------PNDAIESLKKFVVLD-TTSAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-CCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-chhHHHH
Confidence 78888889999999999999999988763 3466677777775555443 999999999987743 2456778
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+-..+...++++.|...+.... ... .-+...+..+-..|.+.|+.++|.. ...|..+-.++.+.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~-~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAI-ALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 888888999999999999999987 443 3345678888889999999999998 22377788889999
Q ss_pred CCHHHHHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRS 187 (295)
Q Consensus 173 g~~~~a~~ll~~m~~ 187 (295)
|++++|...+++..+
T Consensus 155 g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 155 GLRDEAVKYFKKALE 169 (184)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-05 Score=69.27 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|...-..+.+.|++++|+..|+++.+.. ||..+|..+...+...+. +++|...|+++.+.+ +.+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGD--------LKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhh--------HHHHHHHHHHHhccC-hHHHHHH
Confidence 56667788899999999999999998875 788889888885544442 999999999998754 3567899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
..+..+|.+.|++++|...|+.+. ..+
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 103 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLS-LNG 103 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-hcC
Confidence 999999999999999999999887 544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.1e-06 Score=67.84 Aligned_cols=156 Identities=10% Similarity=-0.056 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCC---CCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSA---TDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~---~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
.|..+-..+.+.|++++|+..|++..+.. +-+...+..+-..+.... .......|.+++|...|+...+.. +-+.
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~ 118 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYA 118 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccH
Confidence 67777777888888888888888877653 334455555555443330 000000135999999999988743 2357
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVS 169 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~ 169 (295)
..|..+-..|...|++++|+..|++.. ... .+...+..+-..|...|+.++|.. ...+..+-..+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQAL-ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH-hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 888999999999999999999999998 666 677788888888888888888877 11266667777
Q ss_pred HhcCCHHHHHHHHHHH
Q 048764 170 AGTGRVEKVYQYLQKL 185 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m 185 (295)
...|+.++|...+++.
T Consensus 196 ~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 196 LLKGKAEEAARAAALE 211 (217)
T ss_dssp TC--------------
T ss_pred HHccCHHHHHHHHHHH
Confidence 7888888888777654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=6.3e-05 Score=63.39 Aligned_cols=121 Identities=13% Similarity=0.005 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...|...|++++|+..|+++.+.. +.+..+|..+-..+...+. +++|...|+...+.. +.+..+|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~ 114 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN--------FDAAYEAFDSVLELD-PTYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCTHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcC-ccccHHH
Confidence 88889999999999999999999988764 4467788888775554442 999999999988743 2357889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..+...|...|++++|..+|+.+. .. .|+...+...+..+...|+.++|..
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~-~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFY-QD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-Hh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999987 43 4655554545555555566666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-05 Score=64.24 Aligned_cols=165 Identities=13% Similarity=0.020 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +-+...+..+-..+...+. +++|...|+...+.. +-+...|
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~ 76 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGL--------VNPALENGKTLVART-PRYLGGY 76 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCcHHHH
Confidence 77777888999999999999999988653 4456666666665554442 999999999988743 2457789
Q ss_pred HHHHHHHHcC-----------CCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc-----------HHH
Q 048764 105 TSVARLAASK-----------KDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE-----------EQE 161 (295)
Q Consensus 105 ~~li~~~~~~-----------g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~-----------e~~ 161 (295)
..+-..+... |++++|...|+... .. .|+ ...|..+-..|...|+.++|.. ...
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE-RV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH-Hh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Confidence 9999999999 99999999999988 54 454 5567788889999999999988 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh-hHHHHHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWF 204 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~-~t~~~l~~~~ 204 (295)
+..+-.++...|++++|...+++..+. .|+. ..+..+...+
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 677788899999999999999998764 4544 3444444444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00015 Score=62.55 Aligned_cols=167 Identities=10% Similarity=-0.028 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+...+...+. +++|...|+++.+.. +.+..+|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 92 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLD-PKDIAVH 92 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-cCCHHHH
Confidence 66777788999999999999999998764 4466777777775554442 999999999988753 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCC-----------------------------------------------CC-C
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNV-----------------------------------------------VP-R 136 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi-----------------------------------------------~P-~ 136 (295)
..+...|...|++++|...|+... ...- .| +
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWL-LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999888876 3210 11 2
Q ss_pred cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHHHH
Q 048764 137 LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDW 203 (295)
Q Consensus 137 ~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~ 203 (295)
...+..+...|...|+.++|.. ...|..+...+...|++++|..++.+.... .|+ ...+..+...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 3445556666667777777666 122666667777778888888777776653 232 3444444444
Q ss_pred H
Q 048764 204 F 204 (295)
Q Consensus 204 ~ 204 (295)
+
T Consensus 250 ~ 250 (327)
T 3cv0_A 250 Y 250 (327)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.7e-05 Score=64.42 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+-..+.+.|++++|+..|+++.+.. +.+..++..+-. +...+. +++|...|+.+.+.. +-+..+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGK---------SKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccC---------HHHHHHHHHHHHHhC-CCcchH
Confidence 56666677788888888888888877643 334556666666 334444 888888888877642 235677
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC---C-cccHHHH------------HHHHHhcCCHHHhhc---------
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVP---R-LRTYDPA------------LFCFCENLEAQKAYE--------- 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P---~-~~ty~~l------------l~~~~~~g~~~~A~~--------- 158 (295)
|..+...|...|++++|..+|+... .. .| + ...+..+ ...+...|+.++|..
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVL-KS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-TS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH-hc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888888888877 33 35 2 2333333 366777888888777
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 159 ---EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 ---e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
...+..+-..+...|++++|...+.+..... ..+...+..+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLY 198 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1226667777778888888888888876642 22334444444433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-05 Score=73.55 Aligned_cols=151 Identities=9% Similarity=0.016 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+.+.|++++|+.+|+++.+.. |+...|..+...+...+. +++|...|+.+.... +.+..+|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRND--------STEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSC--------CTTGGGHHHHHHTTC-TTCTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCC--------HHHHHHHHHHHhhcC-cCCHHHH
Confidence 88888999999999999999999998765 337777777775555543 889999999988753 3467789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...|...|++++|...|+... ... ..+...|..+...|...|+.++|.. ...|..+...+...
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAK-ELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHH-HTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-HhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence 999999999999999999999998 543 3356788889999999999999988 12377888889999
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
|++++|..++.++...
T Consensus 386 ~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 386 NDFDKALKQYDLAIEL 401 (514)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.5e-05 Score=65.55 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP----N 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p----d 100 (295)
.|..+-..+...|++++|+..|+++.+.. +-+...|..+-.++...+. +++|...|+...+. .| +
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~--~~~~~~~ 107 (359)
T 3ieg_A 39 AYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK--------LDEAEDDFKKVLKS--NPSEQEE 107 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHTS--CCCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC--------hHHHHHHHHHHHhc--CCcccCh
Confidence 88888999999999999999999998763 3355677777775544442 99999999999874 35 3
Q ss_pred HHHHHHH------------HHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----------
Q 048764 101 EALVTSV------------ARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 101 ~~ty~~l------------i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
...+..+ ...+...|++++|..+|+.+. ... ..+...+..+...|...|+.++|..
T Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL-EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4445444 578889999999999999998 544 3456778889999999999999998
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...|..+-..+...|++++|...+.+....
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233788888899999999999999998764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-05 Score=57.27 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|..+|+++.+.+ +.+..+|..+...+...|++++|..+|+++. ..+ |+ ...
T Consensus 17 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~--------------------- 71 (136)
T 2fo7_A 17 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD--PRSAEA--------------------- 71 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC--TTCHHH---------------------
T ss_pred HHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-HHC--CCchHH---------------------
Confidence 899999999987743 3467788888999999999999999999987 543 33 222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
+..+...+...|++++|..++.++.... ..+...+..+...+
T Consensus 72 -~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 72 -WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 113 (136)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4456666778888889998888887643 22344555555555
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-05 Score=65.20 Aligned_cols=143 Identities=9% Similarity=-0.042 Sum_probs=111.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCC---CCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 35 KSKDLATAISLYESALSLNFR---LSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~~---pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
..+++++|+..|+++.+.... .+..+|..+...+...+. +++|...|++..+.. +.+..+|..+...|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL--------RALARNDFSQALAIR-PDMPEVFNYLGIYL 87 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 457899999999999876421 245666666665544442 999999999998753 34688999999999
Q ss_pred HcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHHHHHHHHHHHhcCCHHHHHH
Q 048764 112 ASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQEITALLKVSAGTGRVEKVYQ 180 (295)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~y~~ll~~~~~~g~~~~a~~ 180 (295)
...|++++|..+|++.. ... ..+...|..+...|.+.|+.++|.. .+.+..++..+...|+.++|..
T Consensus 88 ~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVL-ELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHTTCHHHHHHHHHHHH-HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHccCHHHHHHHHHHHH-hcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999998 543 3357788999999999999999998 1224445555667799999999
Q ss_pred HHHHHHHc
Q 048764 181 YLQKLRST 188 (295)
Q Consensus 181 ll~~m~~~ 188 (295)
++.+....
T Consensus 166 ~~~~~~~~ 173 (275)
T 1xnf_A 166 VLKQHFEK 173 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99877664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=5.3e-05 Score=74.67 Aligned_cols=154 Identities=11% Similarity=0.056 Sum_probs=125.6
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
.|+. .|+.+=..|.+.|++++|+..|++..+.. +-+..+|+.|-.++...+. +++|...|++..+.. +
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~--------~~eA~~~~~~Al~l~-P 74 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK--------LQEALMHYKEAIRIS-P 74 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-T
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-C
Confidence 4554 89999999999999999999999988753 3346777777775555442 999999999988743 2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc------------HHHHHHH
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE------------EQEITAL 165 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~l 165 (295)
-+..+|+.+-..|...|++++|++.|++.. .. .|+ ...|+.+-..|.+.|+.++|.. ...|..|
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl-~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L 151 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAI-QI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhh
Confidence 347899999999999999999999999987 54 454 5678999999999999999998 2238888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048764 166 LKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 166 l~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...+...|++++|.+.+++..+
T Consensus 152 ~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 152 AHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHHHHHHH
Confidence 8999999999999888887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0002 Score=62.42 Aligned_cols=168 Identities=11% Similarity=0.086 Sum_probs=119.7
Q ss_pred HHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCT-------KSKDL-------ATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~-------~~g~~-------~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.|..+...+. +.|++ ++|..+|++..+.--+-+...|..+..++...+. +++|..+|+
T Consensus 52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~ 123 (308)
T 2ond_A 52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------YEKVHSIYN 123 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC--------HHHHHHHHH
Confidence 6666666554 35775 9999999999874223355678888885554442 999999999
Q ss_pred HHHhCCCCCC-H-HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH-hcCCHHHhhc---------
Q 048764 91 QMLSNNVIPN-E-ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC-ENLEAQKAYE--------- 158 (295)
Q Consensus 91 ~M~~~g~~pd-~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~-~~g~~~~A~~--------- 158 (295)
...+ +.|+ . .+|..+...+.+.|++++|..+|+... ... .++...|........ ..|+.+.|..
T Consensus 124 ~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 124 RLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp HHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-TST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9987 4454 2 389999999999999999999999988 543 223333433322222 3699998887
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-cCCC--hhHHHHHHHHH
Q 048764 159 ---EQEITALLKVSAGTGRVEKVYQYLQKLRSTV-RCVN--EETGKIIEDWF 204 (295)
Q Consensus 159 ---e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~-~~p~--~~t~~~l~~~~ 204 (295)
..-|..++..+.+.|+.++|..+|++..... ..|+ ...|..+..+.
T Consensus 200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2237888888999999999999999998863 3442 34565554444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0011 Score=56.15 Aligned_cols=146 Identities=14% Similarity=0.045 Sum_probs=102.7
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc----CCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 25 NFLISLQSCTK----SKDLATAISLYESALSLNFRLSLHHFNALLYLCSN----SATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 25 t~~~li~~~~~----~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~----~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.+..+-..|.. .+++++|+..|++..+.+ +...+..|-..+.. .+ .+++|...|+...+.+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~--------~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQ--------NTNKALQYYSKACDLK 108 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCccc--------CHHHHHHHHHHHHHcC
Confidence 55566666777 788888888888877765 45566655554444 22 2788888888877764
Q ss_pred CCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc----------
Q 048764 97 VIPNEALVTSVARLAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE---------- 158 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~---------- 158 (295)
+..++..+-..|.. .+++++|+..|+... ..+ +...+..+-..|.. .++.++|..
T Consensus 109 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 181 (273)
T 1ouv_A 109 ---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD 181 (273)
T ss_dssp ---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 66777777777877 888888888888877 554 44556666666666 778888777
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 048764 159 EQEITALLKVSAG----TGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 e~~y~~ll~~~~~----~g~~~~a~~ll~~m~~~ 188 (295)
...+..+-..+.. .++.++|...+++..+.
T Consensus 182 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 182 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 1225556666777 78888888888887765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.23 E-value=7e-05 Score=69.69 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|+++.+. .|+...|..+-..+...+. +++|...|++..+.. +.+..+|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 313 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKEN--------SQEFFKFFQKAVDLN-PEYPPTY 313 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSC--------CHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcC--------HHHHHHHHHHHhccC-CCCHHHH
Confidence 4666667888999999999999999875 4556677776666555543 899999999998743 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...|...|++++|...|+... ... ..+...|..+...|...|+.++|.. ...|..+-..+...
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQ-SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 999999999999999999999998 544 2346688899999999999999988 22378888889999
Q ss_pred CCHHHHHHHHHHHHHcc
Q 048764 173 GRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~ 189 (295)
|++++|...+.+.....
T Consensus 392 g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999986643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.6e-05 Score=58.53 Aligned_cols=121 Identities=11% Similarity=-0.033 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+ ..+. +++|...|++..+.. +.+..+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~ 112 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK---------YDLAVPLLIKVAEAN-PINFNV 112 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHhcC-cHhHHH
Confidence 88888999999999999999999988763 44667777777744 4455 999999999987753 357888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+..+...+...|++++|..+|++.. ... ..+...|..+...|...|+.++|..
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIAL-GLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999988 554 3456788899999999999999865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.4e-05 Score=63.64 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL------NFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN-- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~------g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~-- 95 (295)
.|..+-..|...|++++|+..|+++.+. +-.| ...+|..+-..+...+. +++|...|++..+.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLCKRALEIRE 142 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998754 3233 45566666665555553 99999999988763
Q ss_pred ----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc------CCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 96 ----NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEF------NVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 96 ----g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~------gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+- +....+|..+...|...|++++|.++|++.. .. +-.|+ ..++..+...|...|+.++|..
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 2345678889999999999999999999987 43 22333 3468888899999999999987
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00013 Score=63.60 Aligned_cols=155 Identities=8% Similarity=0.053 Sum_probs=118.7
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HH-hHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLS-LH-HFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~-ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
..|+. .|..+...+.+.|++++|..+|+++.+ +.|+ .. .|..+..++ ..++ +++|..+|+...+
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~a~~ 162 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEG---------IKSGRMIFKKARE 162 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHT
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcC---------HHHHHHHHHHHHh
Confidence 35554 899999999999999999999999987 3554 32 788888744 4455 9999999999987
Q ss_pred CCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------H----H---
Q 048764 95 NNVIPNEALVTSVARLAA-SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------E----Q--- 160 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~-~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e----~--- 160 (295)
.. +++...|........ ..|++++|..+|+... ... .-+...|..++..+.+.|+.++|.. . +
T Consensus 163 ~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 163 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGL-KKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 54 244555655444432 3799999999999987 432 2245678888889999999999887 2 1
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 161 ---EITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 161 ---~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
-|..++....+.|+.+.|..+++++.+.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2777888888999999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5e-05 Score=63.92 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL------NFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN-- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~------g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~-- 95 (295)
.|..+-..|...|++++|+..|+++.+. +-.| ...+|..+-..+...+. +++|...|.+....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998754 3233 44566666665555553 89999998887653
Q ss_pred ----C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc------CCCC-CcccHHHHHHHHHhcCCHHHhhc
Q 048764 96 ----N-VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 96 ----g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~------gi~P-~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
. -+....+|..+...|...|++++|..+|++.. .. +-.| ...+|..+-..|...|+.++|..
T Consensus 117 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL-EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 12346788999999999999999999999987 43 1123 24567788888888999888877
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0004 Score=58.42 Aligned_cols=151 Identities=13% Similarity=0.021 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC--HHHH
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN--EALV 104 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd--~~ty 104 (295)
-..-..+.+.|++++|+.+|+++.+.. +-+...+..+...+...+. +++|...|+...+.+-.|+ ..+|
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAK--------YDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTC--------HHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhccCchhHHHHHH
Confidence 334456778888889988888887653 2344466666664444442 8888888888877432222 3457
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+-..|...|++++|...|+... ... ..+...|..+-..|...|+.++|.. ...|..+-..+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAV-DRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 888888888888888888888887 443 2344678888888888888888887 11244444133345
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
+++++|...+.+..+.
T Consensus 156 ~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL 171 (272)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5888888888887763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.001 Score=56.37 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc----CCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSN----SATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~----~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
.+..+=..|.+.|++++|+..|.+..+.+ +...+..|-..+.. .+ .+++|...|++..+.+ +
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~--------~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK--------NLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--------CHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC--------CHHHHHHHHHHHHHCC---C
Confidence 66667777889999999999999998843 44556666555554 33 2999999999998876 7
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc----------HHHH
Q 048764 101 EALVTSVARLAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE----------EQEI 162 (295)
Q Consensus 101 ~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~----------e~~y 162 (295)
..++..+-..|.. .+++++|+..|+... ..+ +...+..+-..|.. .++.++|.. ...+
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 149 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGC 149 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHH
Confidence 7888999999999 999999999999998 665 66778888888888 999999988 2225
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 163 TALLKVSAG----TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 163 ~~ll~~~~~----~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..+-..+.. .++.++|...+++..+.+ ++..+..+-..+
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 192 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 556666666 899999999999987753 334444443334
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00016 Score=67.25 Aligned_cols=167 Identities=9% Similarity=-0.023 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
..|..+-..|.+.|++++|+..|+++.+.. +.+..+|..+-..+...+. +++|...|++..+.. +.+..+
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~ 346 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD--------YKNAKEDFQKAQSLN-PENVYP 346 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCSHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhC-CCCHHH
Confidence 477778888899999999999999888654 3456677777775544442 999999999987743 234678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HHH----------HHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQE----------ITAL 165 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~~----------y~~l 165 (295)
|..+...|...|++++|..+|++.. ... ..+...|..+...|...|+.++|.. .+. +..+
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETK-LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 8889999999999999999999988 543 3345578888889999999999888 111 2233
Q ss_pred HHHHHhc----------CCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 166 LKVSAGT----------GRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 166 l~~~~~~----------g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
-..+... |++++|..++++.... .|+ ...+..+...+
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3456666 9999999999998764 343 34455554444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0011 Score=54.49 Aligned_cols=123 Identities=15% Similarity=0.026 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
..|...=..+.+.|++++|+..|++..+..-+++...+..+-..+...+. +++|...|+...+... -+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~p-~~~~~ 78 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------YKEAADYFDIAIKKNY-NLANA 78 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTC-SHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHhCc-chHHH
Confidence 36666677788999999999999999877644677666665554444442 9999999999887432 25678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc--------ccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL--------RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~--------~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|..+-..|...|++++|...|++.. .. .|+. ..|..+-..+...|+.++|..
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGI-KA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH-HH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH
Confidence 8889999999999999999999987 43 3543 345666667778888888887
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00025 Score=51.62 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...+. +++|..+|+++.... +.+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhC-CccHHHH
Confidence 78888899999999999999999998763 4456777777775554442 999999999998753 3577899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
..+...|...|++++|..+|+++. ..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~-~~ 106 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKAL-EL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-Hh
Confidence 999999999999999999999988 54
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00013 Score=68.00 Aligned_cols=150 Identities=10% Similarity=0.063 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDL-ATAISLYESALSLNFRLSLHHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~-~~A~~lf~~m~~~g~~pd~~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+=..|...|++ ++|+..|++..+.. +-+...|..|-.. +..++ +++|...|+...+.. |+..
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~---------~~~A~~~~~~al~~~--p~~~ 171 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD---------VTSAHTCFSGALTHC--KNKV 171 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHTTC--CCHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhhC--CCHH
Confidence 777788889999999 99999999988763 3356777777774 44555 999999999998754 7788
Q ss_pred HHHHHHHHHHcC---------CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc--------CCHHHhhc-------
Q 048764 103 LVTSVARLAASK---------KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCEN--------LEAQKAYE------- 158 (295)
Q Consensus 103 ty~~li~~~~~~---------g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~--------g~~~~A~~------- 158 (295)
+|..+-..|... |++++|...|++.. ... .-+...|..+-.+|... |+.++|..
T Consensus 172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 999999999999 99999999999988 543 23466788888888888 88998888
Q ss_pred -HH---H----HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 -EQ---E----ITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 -e~---~----y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.+ . |..+-.+|...|++++|...+++..+.
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 2 777888899999999999999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00047 Score=64.82 Aligned_cols=152 Identities=11% Similarity=0.119 Sum_probs=112.6
Q ss_pred HHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCTK-------SKDLA-------TAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~~-------~g~~~-------~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.|......+.+ .|+++ +|..+|++..+.-.+-+...|..+..++...+. +++|..+|+
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~--------~~~A~~~~~ 345 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------YEKVHSIYN 345 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC--------HHHHHHHHH
Confidence 56666666654 68877 899999998763234457788888886555442 999999999
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHH-HHHHhcCCHHHhhc--------
Q 048764 91 QMLSNNVIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPAL-FCFCENLEAQKAYE-------- 158 (295)
Q Consensus 91 ~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll-~~~~~~g~~~~A~~-------- 158 (295)
...+. .|+ ...|...+..+.+.|++++|..+|+... .. .|+ ...|.... -.+...|+.++|..
T Consensus 346 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al-~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 346 RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 99883 454 3589999999999999999999999987 43 343 22222211 12336899998888
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 048764 159 ----EQEITALLKVSAGTGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 159 ----e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~ 189 (295)
...|..+++.+.+.|+.++|..+|++.....
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2237888888999999999999999988753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00047 Score=57.98 Aligned_cols=152 Identities=9% Similarity=-0.025 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS--LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+-..|.+.|++++|+..|+++.+.+-.|+ ...|..+-..+...+. +++|...|+...+.. +.+..
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~ 109 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ--------DSLAIQQYQAAVDRD-TTRLD 109 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCTH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhcC-cccHH
Confidence 788888899999999999999999988442222 2236666665544442 999999999988743 23567
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE------------EQEITALLKVS 169 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~ 169 (295)
+|..+...|...|++++|...|++.. .. .|+. ..|..+-..+...++.++|.. ...|..+-..+
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al-~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQI-RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARAN 186 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGC-CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHh-hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 89999999999999999999999988 54 4544 444444425555669998888 11245566666
Q ss_pred HhcCC---HHHHHHHHHHHHHc
Q 048764 170 AGTGR---VEKVYQYLQKLRST 188 (295)
Q Consensus 170 ~~~g~---~~~a~~ll~~m~~~ 188 (295)
...|+ .++|...+.+..+.
T Consensus 187 ~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 187 AAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHcCcchhhHHHHHHHHHHHHH
Confidence 66677 77788888887664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=97.89 E-value=8.8e-05 Score=62.36 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=104.7
Q ss_pred HhcCCHHHHHHHHHHHHh-------cCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC------CC-CC
Q 048764 34 TKSKDLATAISLYESALS-------LNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN------NV-IP 99 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~------g~-~p 99 (295)
...|++++|+.+|++..+ ...+....++..+-..+...+. +++|...|++..+. +- +.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~ 83 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------YKEAAHLLNDALAIREKTLGKDHPA 83 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHHHHcCCcchH
Confidence 445666666666666553 2223345566666665544442 99999999988753 22 23
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc------CCCC-CcccHHHHHHHHHhcCCHHHhhc------H-------
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAQKAYE------E------- 159 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~------gi~P-~~~ty~~ll~~~~~~g~~~~A~~------e------- 159 (295)
...+|..+...|...|++++|..+|.+.. .. .-.| ...+|..+-..|...|+.++|.. .
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 46689999999999999999999999887 33 1123 35678888889999999999988 1
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 160 -------QEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 160 -------~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
..|..+-..+...|++++|..++.+....
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11667778888999999999999988653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00019 Score=66.97 Aligned_cols=155 Identities=10% Similarity=-0.049 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+-..|.+.|++++|+..|++..+.. |+...+..+-.++... ......+.|.+++|...|++..+.. +-+...
T Consensus 139 a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 215 (474)
T 4abn_A 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRS 215 (474)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 88899999999999999999999998764 7766666666666554 1111112246999999999988743 345888
Q ss_pred HHHHHHHHHcC--------CCHHHHHHHHHHhhhhcCCCC----CcccHHHHHHHHHhcCCHHHhhc------------H
Q 048764 104 VTSVARLAASK--------KDSDYAFELIKRMNNEFNVVP----RLRTYDPALFCFCENLEAQKAYE------------E 159 (295)
Q Consensus 104 y~~li~~~~~~--------g~~~~A~~l~~~M~~~~gi~P----~~~ty~~ll~~~~~~g~~~~A~~------------e 159 (295)
|..+-.+|... |++++|+..|++.. .. .| +...|..+-..|...|+.++|.. .
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAE-KV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHH-Hh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999988 99999999999988 54 35 67788999999999999999988 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 160 QEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 160 ~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
..+..+-..+...|++++|...+.++
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22666667777778888887655443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0011 Score=52.53 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..|.+.|++++|+..+....... +-+...+..+-..+..... ++.|...+....... +-+..++
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~a~~~~-~~~~~~~ 110 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDE--------KQAAIDALQRAIALN-TVYADAY 110 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-ccchHHH
Confidence 88888999999999999999999987654 2334445544444444442 999999999887643 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..+-..|.+.|++++|++.|++.. ... .-+..+|..+-..|.+.|+.++|..
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~~l-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 111 YKLGLVYDSMGEHDKAIEAYEKTI-SIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCchhHHHHHHHHH-Hhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999988 543 3345678889999999999999976
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0013 Score=56.69 Aligned_cols=155 Identities=6% Similarity=-0.041 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHH----hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN-FRLSLH----HFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-I 98 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~----ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~ 98 (295)
.+...+..+...|++++|..++++..+.. ..|+.. .|..+...+...+. +++|...|++...... .
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------YEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC--------HHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC--------HHHHHHHHHHHHHHhccc
Confidence 44455788999999999999999988643 234422 22233334433332 9999999999987322 2
Q ss_pred CC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hc-CCCCCc-ccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 99 PN----EALVTSVARLAASKKDSDYAFELIKRMNN---EF-NVVPRL-RTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 99 pd----~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~-gi~P~~-~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
+| ..+|+.+-..|...|++++|..+|++... .. +..|.. .+|..+-..|.+.|+.++|..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33 34799999999999999999999998872 11 222222 367788888999999999988
Q ss_pred -------HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTG-RVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g-~~~~a~~ll~~m~~ 187 (295)
...|..+-.++.+.| ..++|...+++...
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 112566666777788 46888888887543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0013 Score=61.83 Aligned_cols=154 Identities=8% Similarity=0.058 Sum_probs=114.9
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSL--HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.|+. .|..+...+.+.|++++|..+|+.+.+. .|+. ..|..+..+..+.+ .+++|+.+|+...+..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE--------GIKSGRMIFKKAREDA 386 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTCT
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcc
Confidence 4543 8999999999999999999999999874 5542 46777777444333 3999999999988752
Q ss_pred CCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc-----------HH---
Q 048764 97 VIPNEALVTSVARL-AASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE-----------EQ--- 160 (295)
Q Consensus 97 ~~pd~~ty~~li~~-~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~-----------e~--- 160 (295)
- .+...|-..... +...|++++|..+|+... ... | +...|..++..+.+.|+.++|.. .+
T Consensus 387 ~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al-~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 387 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL-KKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp T-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred C-CchHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 1 222333322222 335899999999999887 432 5 45678888888999999998887 11
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 161 --EITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 161 --~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
-|...+......|+.+.+..+..++.+.
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3777788888899999999999998764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00082 Score=49.18 Aligned_cols=116 Identities=11% Similarity=0.018 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|++..... +.+...+..+-..+...+. +++|...|+...... +.+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 83 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGN--------YAGAVQDCERAICID-PAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHhcC-ccCHHHH
Confidence 88888899999999999999999988653 3456677777665544442 999999999987743 3457889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLE 152 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~ 152 (295)
..+...|...|++++|...|+... ... ..+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~-~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKAL-ELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999987 543 2244556666666666554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00087 Score=63.57 Aligned_cols=122 Identities=7% Similarity=-0.072 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..|.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|++..+.. +-+...|
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 94 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQR--------HAEAAVLLQQASDAA-PEHPGIA 94 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 55666666666666666666666665542 2234445444443333332 666666666665532 2245566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc---CCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCEN---LEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~---g~~~~A~~ 158 (295)
..+-..|...|++++|.+.|++.. ... .-+...|..+...+... |+.++|..
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAH-QLL-PEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 666666666666666666666665 332 11233444444444444 44444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0047 Score=51.91 Aligned_cols=156 Identities=10% Similarity=0.026 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS---LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IP 99 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~p 99 (295)
.+-.+-..+.+.|++++|+..|+++.+.. +-+ ...+..+-. ++..++ +++|...|+...+... .|
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~---------~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKE---------YLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCc---------HHHHHHHHHHHHHHCCCCc
Confidence 44455566788999999999999998753 112 344444444 444455 9999999999987432 22
Q ss_pred C-HHHHHHHHHHHHc--------CCCHHHHHHHHHHhhhhcCCCCCc-ccH-----------------HHHHHHHHhcCC
Q 048764 100 N-EALVTSVARLAAS--------KKDSDYAFELIKRMNNEFNVVPRL-RTY-----------------DPALFCFCENLE 152 (295)
Q Consensus 100 d-~~ty~~li~~~~~--------~g~~~~A~~l~~~M~~~~gi~P~~-~ty-----------------~~ll~~~~~~g~ 152 (295)
+ ..++..+-..+.. .|++++|...|++.. .. .|+. ... ..+-..|.+.|+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI-DR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH-HH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH-HH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3 4567777778888 999999999999988 44 3543 233 334567788899
Q ss_pred HHHhhc--------HH-------HHHHHHHHHHhc----------CCHHHHHHHHHHHHHcccCCChh
Q 048764 153 AQKAYE--------EQ-------EITALLKVSAGT----------GRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 153 ~~~A~~--------e~-------~y~~ll~~~~~~----------g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.++|.. .| .+..+-.++... |++++|...++++... .|+..
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 998888 11 144555556544 8889999999988764 45543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0016 Score=53.27 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=107.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHhHHH----------------HHHHHHcCCCCCCcchHHHHHHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLS-LHHFNA----------------LLYLCSNSATDPSLKDSALRHGFRVFDQM 92 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~----------------ll~~~~~~~~~~~~~~~~~~~a~~lf~~M 92 (295)
-..+.+.|++++|+..|++..+. .|+ ...|.. +-..+...+. +++|...|++.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~a 80 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------YDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------HHHHHHHHHHH
Confidence 34567899999999999998765 333 333433 4444444442 99999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHh--hc---------HH
Q 048764 93 LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKA--YE---------EQ 160 (295)
Q Consensus 93 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A--~~---------e~ 160 (295)
.+.. +-+...|..+-..|...|++++|...|++.. .. .|+ ...|..+-..|...|+.+.+ .. ..
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKIL-QL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch
Confidence 8743 2468899999999999999999999999988 54 354 55677777777665543322 11 11
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHH
Q 048764 161 EI--TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIED 202 (295)
Q Consensus 161 ~y--~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~ 202 (295)
.| ..+-.++...|++++|...|++..+ ..|+......+..
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 12 2222334557899999999999876 4677665555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0022 Score=56.48 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.|++++.+.|++++|..+|+.+.
T Consensus 216 lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 216 GLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445555566666666665443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0017 Score=47.81 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +.+...+..+-..+...+. +++|...|++..+.. +.+..+|
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLE--------FQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC-CCchHHH
Confidence 88889999999999999999999988653 3356667666665555543 999999999988743 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcC
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENL 151 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g 151 (295)
..+...|...|++++|...|++.. .. .|+ ...+..+-..+...|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~-~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKAL-DL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-Hh--CCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999987 44 343 334455555554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0014 Score=53.14 Aligned_cols=140 Identities=9% Similarity=-0.027 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+-..+.+.|++++|+..|++. +.|+...|..+-..+...+. +++|...|++..+.. +.+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-~~~~~~~ 74 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKN--------MTEAEKAFTRSINRD-KHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-ccchHHH
Confidence 3445566778899999999999877 46678888888885544442 999999999987743 3567889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---HHHHHHHHHHHHhcCCHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---EQEITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---e~~y~~ll~~~~~~g~~~~a~~l 181 (295)
..+-..|...|++++|...|+... ... |+..... +...|. ... ...|..+-.++...|++++|...
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al-~~~--~~~~~~~-----~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEAL-IQL--RGNQLID-----YKILGL---QFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTT--TTCSEEE-----CGGGTB---CCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-HhC--CCccHHH-----HHHhcc---ccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999999999999988 432 3211000 000000 000 11256666778888999999999
Q ss_pred HHHHHHc
Q 048764 182 LQKLRST 188 (295)
Q Consensus 182 l~~m~~~ 188 (295)
+++....
T Consensus 144 ~~~al~~ 150 (213)
T 1hh8_A 144 LALATSM 150 (213)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 9887764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0088 Score=49.26 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC-HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNF-RLS-LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNE 101 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd-~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~ 101 (295)
+-.+-..+.+.|++++|+..|+++.+..- .|. ...+..+-. ++..++ +++|...|+...+... .|..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~---------~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD---------LPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHCcCCCcH
Confidence 33444568889999999999999986531 121 234444555 445555 9999999999987432 2221
Q ss_pred -HHHHHHHHHHH------------------cCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 102 -ALVTSVARLAA------------------SKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 102 -~ty~~li~~~~------------------~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
..+-.+-..+. ..|++++|...|++.. .. -|+..
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~--~P~~~ 130 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLV-RG--YPNSQ 130 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH-TT--CTTCT
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHH-HH--CcCCh
Confidence 13333333333 3678999999999988 43 46654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0024 Score=57.95 Aligned_cols=171 Identities=11% Similarity=0.083 Sum_probs=128.7
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCC-CCCCcchHHHHHHHHHHHHHHhCC
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSA-TDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~-~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
..|+. .|..+-..+.+.|++++|+..|+++.+.. +-+...|+.+-.++...+ . +++|+..|++..+..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d--------~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKD--------LHEEMNYITAIIEEQ 162 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccC--------HHHHHHHHHHHHHHC
Confidence 44554 78888888999999999999999998753 335566666666554444 2 999999999998843
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITA 164 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ 164 (295)
- -+...|+.+-.++...|++++|+..|+... ... .-+...|..+-.++.+.|+.++|+. ...|+.
T Consensus 163 P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal-~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~ 239 (382)
T 2h6f_A 163 P-KNYQVWHHRRVLVEWLRDPSQELEFIADIL-NQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239 (382)
T ss_dssp T-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2 367899999999999999999999999998 554 3355678888889999999998888 223777
Q ss_pred HHHHHHh-cCCHHHH-----HHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 165 LLKVSAG-TGRVEKV-----YQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 165 ll~~~~~-~g~~~~a-----~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
+-.++.. .|..++| +..+++... ..|+ ...|..+...+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGIL 284 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 7777777 6665777 477777665 3565 45566665555
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0013 Score=56.85 Aligned_cols=152 Identities=10% Similarity=0.101 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHhC---
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLSN--- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~~--- 95 (295)
+|+.+-..|.+.|++++|+..|++..+. |-... ..+|+.+-.++... + .+++|...|++..+.
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--------~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--------DYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHHHHHh
Confidence 7777778888888888888888776532 21111 34566666655542 3 288999999887652
Q ss_pred -CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc------cHHHHHHHHHhcCCHHHhhc--------H
Q 048764 96 -NVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR------TYDPALFCFCENLEAQKAYE--------E 159 (295)
Q Consensus 96 -g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~------ty~~ll~~~~~~g~~~~A~~--------e 159 (295)
+-.+. ..+|+.+...|...|++++|+..|++.. ......... +|..+..++...|+.++|.. .
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI-KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 11111 3578899999999999999999999988 543222222 45667778889999999887 2
Q ss_pred HH---------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 048764 160 QE---------ITALLKVSA--GTGRVEKVYQYLQKL 185 (295)
Q Consensus 160 ~~---------y~~ll~~~~--~~g~~~~a~~ll~~m 185 (295)
|. +..|+.++. ..+++++|...++++
T Consensus 230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 22 233455553 345677777666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0027 Score=57.54 Aligned_cols=165 Identities=9% Similarity=0.066 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKD-LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|+.+-..+.+.|+ +++|+..|+++.+.. +-+...|+.+-.++...+. +++|...|+...+.. +-|...
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~--------~~eAl~~~~kal~ld-P~~~~a 202 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQD-AKNYHA 202 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-ccCHHH
Confidence 88888888999996 999999999998764 3356677776664444332 889999999998743 247889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh-cCCHHHhh-----c------------HHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE-NLEAQKAY-----E------------EQEITAL 165 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~-~g~~~~A~-----~------------e~~y~~l 165 (295)
|..+-.++...|++++|+..|+++. ... .-+...|+.+-.+|.+ .|..++|. . ...|+.+
T Consensus 203 ~~~lg~~~~~~g~~~eAl~~~~~al-~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l 280 (382)
T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLL-KED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYL 280 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999998 654 2345678888888888 66646663 2 2237777
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHcccCCCh-hHHHHHHHHH
Q 048764 166 LKVSAGTG--RVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWF 204 (295)
Q Consensus 166 l~~~~~~g--~~~~a~~ll~~m~~~~~~p~~-~t~~~l~~~~ 204 (295)
-..+...| ++++|.+++.++ ...|+. ..+..+...+
T Consensus 281 ~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 281 KGILQDRGLSKYPNLLNQLLDL---QPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTTCGGGCHHHHHHHHHH---TTTCCCHHHHHHHHHHH
T ss_pred HHHHHccCccchHHHHHHHHHh---ccCCCCHHHHHHHHHHH
Confidence 77788877 689999999887 234443 3444444444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.008 Score=51.64 Aligned_cols=154 Identities=7% Similarity=-0.041 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-H----HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC---
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS-L----HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN--- 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g--- 96 (295)
.+...+..+...|++++|+..+.+..+.....+ . ..+..+...+...+. +++|...|++..+..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------YEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--------HHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHhcC
Confidence 455677888999999999999998876542221 1 112222223344332 999999999887532
Q ss_pred CCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-----cccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 97 VIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-----LRTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 97 ~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-----~~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
..+. ..+|+.+-..|...|++++|..+|++........|+ ..+|..+-..|.+.|+.++|..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 1222 458999999999999999999999987621112233 2578888889999999999998
Q ss_pred -------HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTGRVEKV-YQYLQKLR 186 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g~~~~a-~~ll~~m~ 186 (295)
...|..+-..+.+.|+.++| ...+++-.
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11256666778888999999 77677643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0017 Score=49.91 Aligned_cols=130 Identities=12% Similarity=-0.003 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|++..+.. +.+..++..+-..+...+. +++|...|+...+.. +.+..+|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 84 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cccHHHH
Confidence 67778888999999999999999988653 3456667666665554442 999999999987743 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
..+...+...|++++|...|++.. ... |+.. .+. +-.+...+...|++++|..++.
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~-~~~--p~~~~~~~--------------------~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVV-KVK--PHDKDAKM--------------------KYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHS--TTCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhC--CCCHHHHH--------------------HHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999988 443 4322 211 1122223445677777777776
Q ss_pred HHHH
Q 048764 184 KLRS 187 (295)
Q Consensus 184 ~m~~ 187 (295)
....
T Consensus 142 ~~~~ 145 (166)
T 1a17_A 142 HKRS 145 (166)
T ss_dssp HHHH
T ss_pred chHH
Confidence 6543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0019 Score=51.52 Aligned_cols=147 Identities=10% Similarity=-0.037 Sum_probs=86.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CCCCC-CHHHHHHHH
Q 048764 34 TKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NNVIP-NEALVTSVA 108 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g~~p-d~~ty~~li 108 (295)
...|++++|..+++.+... ......++..+-..+...+. +++|...|++... .+..| ...+++.+-
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDR--------FDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3467777777755444321 12234455555554443332 7777777776654 22222 345566777
Q ss_pred HHHHcCCCHHHHHHHHHHhhhh---cCCCC--CcccHHHHHHHHHhcCCHHHhhc------------------HHHHHHH
Q 048764 109 RLAASKKDSDYAFELIKRMNNE---FNVVP--RLRTYDPALFCFCENLEAQKAYE------------------EQEITAL 165 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~---~gi~P--~~~ty~~ll~~~~~~g~~~~A~~------------------e~~y~~l 165 (295)
..|...|++++|...|++.... .+-.| ....+..+-..+...|+.++|.. ...+..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 7777788888888777765521 11111 12345666667777788777776 0014666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcc
Q 048764 166 LKVSAGTGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 166 l~~~~~~g~~~~a~~ll~~m~~~~ 189 (295)
-..+...|++++|...+.+.....
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHH
Confidence 777888999999999888866543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0024 Score=54.61 Aligned_cols=155 Identities=10% Similarity=-0.009 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN----N 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~----g 96 (295)
.+...-..+.+.|++++|+.+|+++.+.. +.+ ...|..+-..+...+. +++|...|++.... +
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~ 77 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHD--------YAKALEYHHHDLTLARTIG 77 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHhhccc
Confidence 44445567788899999999999988763 223 3455566664444442 88888888876441 2
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC----cccHHHHHHHHHhcCC-------------------
Q 048764 97 VIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR----LRTYDPALFCFCENLE------------------- 152 (295)
Q Consensus 97 ~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~----~~ty~~ll~~~~~~g~------------------- 152 (295)
-.| ...++..+...|...|++++|...|++......-.++ ..+|..+-..|...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 122 2567788888888999999999998886521111122 3367777788888888
Q ss_pred -HHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 -AQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 -~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|++++|..++.+....
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 777766 012566677788889999998888886543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0028 Score=56.59 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
+++.+=..|...|++++|+..|++..+. +-.+. ..+|..+-..+...+. +++|...|++..+ .
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--------~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--------YEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhh
Confidence 7888888999999999999999987643 21111 2355555555544442 9999999998766 1
Q ss_pred CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCCcccHHHHHHHHHhcCC---HHHhhc----------
Q 048764 96 NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPRLRTYDPALFCFCENLE---AQKAYE---------- 158 (295)
Q Consensus 96 g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~~~ty~~ll~~~~~~g~---~~~A~~---------- 158 (295)
+. +....++..+-..|.+.|++++|...|++... ..+-......+..+-..|...|+ +++|+.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~ 337 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHH
Confidence 33 44567899999999999999999999998762 11111112335667777778888 666666
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...+..|-..|...|+.++|...+++...
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12366778889999999999999998655
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0068 Score=48.85 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|++. +.|+..+|..+...|...|++++|...|+... ... |+ ...|
T Consensus 22 ~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--~~~~~~~-------------------- 74 (213)
T 1hh8_A 22 WKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRD--KHLAVAY-------------------- 74 (213)
T ss_dssp HHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHH--------------------
T ss_pred HHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC--ccchHHH--------------------
Confidence 89999999876 35788899999999999999999999999887 443 43 2333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+-..+...|++++|...+++...
T Consensus 75 --~~lg~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 75 --FQRGMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344445566666666666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00065 Score=60.87 Aligned_cols=155 Identities=12% Similarity=-0.058 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHcCCCCCCcchHH-----------------H
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRL-SLHHFNALLYLCSNSATDPSLKDSA-----------------L 82 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~-----------------~ 82 (295)
.|..+-..|...|++++|+..|+++.+. +-.| ...+|..+-..+...+ . +
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG--------KHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--------HHHHHHSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC--------cccccccchhhhhhhhHHH
Confidence 7777788888888888888888876543 1112 2234444444333333 4 6
Q ss_pred HHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCC----cccHHHHHHHHHhcCC
Q 048764 83 RHGFRVFDQMLS----NNVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPR----LRTYDPALFCFCENLE 152 (295)
Q Consensus 83 ~~a~~lf~~M~~----~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~----~~ty~~ll~~~~~~g~ 152 (295)
++|...|++..+ .+-.| ...+|..+-..|...|++++|..+|++.. ...- .++ ..+|..+...|...|+
T Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 778777776543 11112 23578888899999999999999999876 3210 112 2378888889999999
Q ss_pred HHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 AQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 ~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|++++|..++++....
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988 012667778889999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0012 Score=56.53 Aligned_cols=155 Identities=14% Similarity=0.047 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHH-HcCCCCCCcc
Q 048764 25 NFLISLQSCTKSKD--------------------LATAISLYESALSL----NFRLS-LHHFNALLYLC-SNSATDPSLK 78 (295)
Q Consensus 25 t~~~li~~~~~~g~--------------------~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~-~~~~~~~~~~ 78 (295)
.|..+-..|...|+ +++|+..|++.... +..|. ..++..+-..+ ..+.
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 198 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN------ 198 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC------
Confidence 78888888999999 99999999876532 22222 33555555544 4444
Q ss_pred hHHHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC----cccHHHHHHHHHh
Q 048764 79 DSALRHGFRVFDQMLSN----NVI-PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR----LRTYDPALFCFCE 149 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~----g~~-pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~----~~ty~~ll~~~~~ 149 (295)
+++|...|++..+. +.. ....++..+...+...|++++|..+|++......-.++ ..++..+-..|..
T Consensus 199 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 199 ---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 88999999887652 111 11347888999999999999999999987621110112 4567788888999
Q ss_pred cCCHHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 150 NLEAQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 150 ~g~~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.|+.++|.. ...|..+-..+.+.|++++|..++++....
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999988 012667778888999999999999987663
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0052 Score=50.38 Aligned_cols=123 Identities=8% Similarity=-0.046 Sum_probs=95.9
Q ss_pred CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 57 SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 57 d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
|...+..+-. +...++ +++|...|+...+..-+++...+..+-..+...|++++|+..|+... .. .|
T Consensus 6 ~~~~~~~~g~~~~~~~~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~--~p 73 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKN---------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KK--NY 73 (228)
T ss_dssp CHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--TC
T ss_pred CHHHHHHHHHHHHHccC---------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-Hh--Cc
Confidence 4445555545 444555 99999999999886654788888889999999999999999999987 44 35
Q ss_pred -CcccHHHHHHHHHhcCCHHHhhc--------H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC
Q 048764 136 -RLRTYDPALFCFCENLEAQKAYE--------E-----------QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 136 -~~~ty~~ll~~~~~~g~~~~A~~--------e-----------~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
+...|..+-..|...|+.++|.. . ..|..+=..+...|++++|...+.+..+. .|+
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 45678888899999999999998 1 12555666678899999999999998764 454
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.002 Score=55.68 Aligned_cols=154 Identities=7% Similarity=-0.046 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|+.....|...|++++|+..|.+..+. |-+++ ..+|+.+-.++...+. +++|...|+.-.+ .
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------SVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHc
Confidence 7888899999999999999999987643 33333 4677777776666543 8888888887654 2
Q ss_pred CCCC-CHHHHHHHHHHHHcC-CCHHHHHHHHHHhhhhcCC-CCC----cccHHHHHHHHHhcCCHHHhhc----------
Q 048764 96 NVIP-NEALVTSVARLAASK-KDSDYAFELIKRMNNEFNV-VPR----LRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 96 g~~p-d~~ty~~li~~~~~~-g~~~~A~~l~~~M~~~~gi-~P~----~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
|-.+ -..+|+.+-..|... |++++|+..|++.. ...- ..+ ..+|+.+-..|.+.|+.++|..
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAG-EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 2111 145788899999996 99999999999876 3210 011 3467888889999999999988
Q ss_pred ---HH------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 ---EQ------EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 ---e~------~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.. .|..+..++...|++++|...+++...
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 10 245566678889999999999998654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00092 Score=59.87 Aligned_cols=153 Identities=10% Similarity=-0.001 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhC----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSN---- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~---- 95 (295)
.+..+-..+...|++++|+.+|+++.+.. +.+. ..|..+-..+ ..++ +++|...|++..+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGD---------YNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHc
Confidence 55566678899999999999999998763 2232 3555555544 4455 88999988887552
Q ss_pred CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc----CCCC-CcccHHHHHHHHHhcCC-----------------
Q 048764 96 NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEF----NVVP-RLRTYDPALFCFCENLE----------------- 152 (295)
Q Consensus 96 g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~----gi~P-~~~ty~~ll~~~~~~g~----------------- 152 (295)
+- +....+|..+-..|...|++++|...|++.. .. +-.| ...+|..+-..|...|+
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 21 2345678888889999999999999998876 32 1112 23467778888888999
Q ss_pred HHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 AQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 ~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|++++|..++.+....
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888877 012666777788889999999988887553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0055 Score=54.67 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
+++.+=..|...|++++|+..|++..+. +-.+ ...+++.|-..+...+. +++|...|++..+ .
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--------DQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhh
Confidence 8888888999999999999999987643 2111 12344444444443332 8899999988766 1
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC---CC-cccHHHHHHHHHhcCC---HHHhhc----------
Q 048764 96 NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV---PR-LRTYDPALFCFCENLE---AQKAYE---------- 158 (295)
Q Consensus 96 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~---P~-~~ty~~ll~~~~~~g~---~~~A~~---------- 158 (295)
+.+....++..+-..|.+.|++++|..+|++.. ...-. |. ...+..+-..|...|+ +.+|+.
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~ 334 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL-DHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAY 334 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhH
Confidence 223337788999999999999999999999887 43211 21 2234445555556777 666666
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...+..+-..|...|+.++|...+++...
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11256777889999999999999998754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0029 Score=46.19 Aligned_cols=106 Identities=8% Similarity=0.024 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCC--CCC-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNV--IPN- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~--~pd- 100 (295)
.|..+-..+...|++++|+..|++..... +.+...+..+-..+ ..+. +++|...|+....... .++
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD---------YNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHhhccccchhH
Confidence 77888889999999999999999988764 44566676666644 4455 9999999999877321 233
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHH
Q 048764 101 ---EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPA 143 (295)
Q Consensus 101 ---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~l 143 (295)
..+|..+...|...|++++|...|+... .. .|+......+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~l 118 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-AE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-Hh--CCCHHHHHHH
Confidence 7788899999999999999999999988 54 3554444433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0032 Score=54.32 Aligned_cols=117 Identities=10% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH-HHHhcCCHHHhhc--
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF-CFCENLEAQKAYE-- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~-~~~~~g~~~~A~~-- 158 (295)
+++|..+|++..+.. +-+...+..+...+...|++++|..+|+... .. .|+......... .+...++.+.|..
T Consensus 133 ~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l 208 (287)
T 3qou_A 133 YTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIP-LQ--DQDTRYQGLVAQIELLXQAADTPEIQQL 208 (287)
T ss_dssp HHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-GG--GCSHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCc-hh--hcchHHHHHHHHHHHHhhcccCccHHHH
Confidence 667777777665532 1245566666667777777777777777665 32 243322211111 1333333333322
Q ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC---hhHHHHHHHHH
Q 048764 159 ----------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN---EETGKIIEDWF 204 (295)
Q Consensus 159 ----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~---~~t~~~l~~~~ 204 (295)
...+..+-..+...|++++|...+.++... .|+ ...+..+...|
T Consensus 209 ~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 209 QQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHH
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHH
Confidence 112556666677777888887777777664 233 23445555555
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0033 Score=55.67 Aligned_cols=155 Identities=10% Similarity=-0.009 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NN 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g 96 (295)
.+...=..+.+.|++++|+..|+++.+.. +.+ ...|..+-..+...+. +++|...|++... .+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHD--------YAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHhcc
Confidence 55666677888999999999999888763 223 2455555554444332 8888888887644 22
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC----cccHHHHHHHHHhcCC-------------------
Q 048764 97 VIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR----LRTYDPALFCFCENLE------------------- 152 (295)
Q Consensus 97 ~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~----~~ty~~ll~~~~~~g~------------------- 152 (295)
-.| ...+|..+...|...|++++|...|++......-.++ ..+|..+-..|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 222 2456777888888899999998888876521110112 3467777777888888
Q ss_pred -HHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 -AQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 -~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|++++|...+.+....
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777766 012566666677778888888877776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.01 Score=52.49 Aligned_cols=154 Identities=11% Similarity=0.025 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--CC-HHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFR--LS-LHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~--pd-~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
++..+-..+...|++++|...|++..+. +.. |. ...+..+-..+ ..++ +++|...+++.....
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---------LDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHh
Confidence 4566777788999999999999987642 222 33 33444444444 4455 999999999876522
Q ss_pred ----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHH-----HHHHHHHhcCCHHHhhc--------
Q 048764 97 ----VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYD-----PALFCFCENLEAQKAYE-------- 158 (295)
Q Consensus 97 ----~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~-----~ll~~~~~~g~~~~A~~-------- 158 (295)
......+|..+...+...|++++|..++++.. ...-.++. ..+. ..+..+...|+.++|..
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 11134678888899999999999999999886 43212222 1222 22344778999999877
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 --------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 --------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...+..+...+...|+.++|..++.+....
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112566778888999999999999987654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0022 Score=56.83 Aligned_cols=154 Identities=14% Similarity=0.064 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHH-cCCCCCCcc
Q 048764 25 NFLISLQSCTKSKD--------------------LATAISLYESALSL----NFRLS-LHHFNALLYLCS-NSATDPSLK 78 (295)
Q Consensus 25 t~~~li~~~~~~g~--------------------~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~-~~~~~~~~~ 78 (295)
.|..+-..|...|+ +++|+..|.+..+. +-.|. ..+|..+-..+. .+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------ 202 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN------ 202 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB------
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC------
Confidence 78888888999999 99999999876532 22222 234555555444 444
Q ss_pred hHHHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC-CCCC----cccHHHHHHHHH
Q 048764 79 DSALRHGFRVFDQMLSNN-VIPN----EALVTSVARLAASKKDSDYAFELIKRMNNEFN-VVPR----LRTYDPALFCFC 148 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g-~~pd----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g-i~P~----~~ty~~ll~~~~ 148 (295)
+++|...|++..+.. -.++ ..+|..+...|...|++++|...|++.. ... -.++ ..+|..+-..|.
T Consensus 203 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 203 ---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhCcCchHHHHHHHHHHHHHH
Confidence 899999998876521 0122 3478889999999999999999999876 221 0111 457788888999
Q ss_pred hcCCHHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 149 ENLEAQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 149 ~~g~~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
..|+.++|.. ...|..+-..+...|++++|...+.+....
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999988 012667777888999999999999986553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0077 Score=42.56 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC--CHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP--NEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p--d~~ 102 (295)
.|..+-..+.+.|++++|+..|++..+.. +.+...|..+-..+...+. +++|...|++..+.. +. +..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 77 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLER--------YEEAVDCYNYVINVI-EDEYNKD 77 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTS-CCTTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-cccchHH
Confidence 67777888999999999999999988764 3455666666664444442 999999999998753 23 588
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHhhhhcC
Q 048764 103 LVTSVARLAASK-KDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 103 ty~~li~~~~~~-g~~~~A~~l~~~M~~~~g 132 (295)
+|..+...+... |++++|.+.|.... ...
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~-~~~ 107 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAK-LEH 107 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHG-GGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHh-hcc
Confidence 999999999999 99999999999988 443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.007 Score=43.56 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=68.6
Q ss_pred HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 58 LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
...|..+...+...+. +++|..+|+++.... +.+..+|..+...+...|++++|..+|+.+. ... ..+.
T Consensus 9 ~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGD--------YDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCH
T ss_pred HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CccH
Confidence 4556666664444442 899999999987743 3467888889999999999999999999988 543 1222
Q ss_pred ccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 138 RTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 138 ~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.+ +..+...+...|++++|..+++++...
T Consensus 78 ~~----------------------~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 78 EA----------------------WYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HH----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH----------------------HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 23 344555667777788888888777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.018 Score=40.81 Aligned_cols=99 Identities=6% Similarity=-0.077 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+...+...|++++|+..|++..... +.+...+..+-..+ ..++ +++|...|++..+.. +.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~ 74 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD---------YQKAYEDGCKTVDLK-PDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhcc---------HHHHHHHHHHHHHhC-cccHHH
Confidence 67778888999999999999999988653 33566666666644 4444 999999999987743 246788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
|..+...+...|++++|...|+... .. .|+.
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~--~~~~ 105 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGL-KH--EANN 105 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-TT--CTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH-Hc--CCCC
Confidence 9999999999999999999999987 43 4544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.012 Score=45.64 Aligned_cols=102 Identities=14% Similarity=-0.015 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|+...+.. +-+...|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQ--------HEKAAEDAELATVVD-PKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 78888889999999999999999988753 3356666666665544442 999999999988743 2357889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
..+-..|...|++++|...|++.. .. .|+...
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al-~~--~p~~~~ 114 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGI-EA--EGNGGS 114 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--HSSSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH-Hh--CCCchH
Confidence 999999999999999999999887 43 355443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0037 Score=55.04 Aligned_cols=120 Identities=10% Similarity=0.098 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP---- 99 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p---- 99 (295)
++-.+-..+...|++++|++++.+-...+- .-+...+..++.++...+. .+.|.++++.|.+. .|
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--------~d~A~k~l~~~~~~--~~d~~~ 171 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--------VSTASTIFDNYTNA--IEDTVS 171 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH--SCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhc--Cccccc
Confidence 445666777777888888888877665543 2345566666664433332 78888888888663 45
Q ss_pred -CHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 100 -NEALVTSVARLAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 100 -d~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
+..+..-|+.++.. .+++..|+.+|+++. .. .|+..+-..++.++.+.|++++|.
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~-~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELS-QT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH-TT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-Hh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 35666666655322 237888888888876 33 254444455666777788887773
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0094 Score=44.62 Aligned_cols=106 Identities=12% Similarity=0.007 Sum_probs=83.8
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
..|+. .|...=..|.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|+...+.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~- 77 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLME--------FQRALDDCDTCIRLD- 77 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhcc--------HHHHHHHHHHHHHhh-
Confidence 45665 78888888999999999999999988653 4466777777665554442 999999999987743
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+.+...|..+-.+|...|++++|.+.|+... .. .|+..
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~l--~P~~~ 115 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDAL-QV--DPSNE 115 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH--CcCCH
Confidence 2457889999999999999999999999987 43 46644
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.018 Score=56.56 Aligned_cols=134 Identities=11% Similarity=0.093 Sum_probs=104.9
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
+...|+.|=.++...+. +++|...|++..+.. +-+..+|+.|-.+|.+.|++++|+..|++.. .. .|+
T Consensus 8 ~a~al~nLG~~~~~~G~--------~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l--~P~ 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGN--------IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI-RI--SPT 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTT
T ss_pred cHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCC
Confidence 45677777775555443 999999999988742 2347889999999999999999999999987 54 465
Q ss_pred -cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh-hHHHHHHH
Q 048764 137 -LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE-ETGKIIED 202 (295)
Q Consensus 137 -~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~-~t~~~l~~ 202 (295)
...|..+-..|...|+.++|.. ...|+.|-..+...|++++|...+++..+. .|+. ..+..+..
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAH 153 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhh
Confidence 5678889999999999999988 223888888999999999999999998763 5654 34444444
Q ss_pred HH
Q 048764 203 WF 204 (295)
Q Consensus 203 ~~ 204 (295)
.+
T Consensus 154 ~l 155 (723)
T 4gyw_A 154 CL 155 (723)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0024 Score=50.57 Aligned_cols=120 Identities=8% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+-..+.+.|++++|+..|++..+.. +-+...+..+-.++...+. +++|...|+...... |+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~--------~~~A~~~~~~a~~~~--p~~~~~ 76 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQ--------FELAQELLATIPLEY--QDNSYK 76 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTC--------HHHHHHHHTTCCGGG--CCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHhhhcc--CChHHH
Confidence 34445556667777777777777655431 2234444545443333332 777777777655422 233322
Q ss_pred HHHHHH-HHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARL-AASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~-~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..+... +...+....|...|+... .. .|+ ...+..+-..+...|+.++|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al-~~--~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQEL-AA--NPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 221111 111122233556666555 32 243 3344444444444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.005 Score=60.04 Aligned_cols=145 Identities=12% Similarity=-0.021 Sum_probs=111.6
Q ss_pred HhcCCHHHHHHHHHHHHh-------cCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 34 TKSKDLATAISLYESALS-------LNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
...|++++|+..|++..+ ..-+.+...|..+-. +...++ +++|...|++..+.. +-+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~a~~ 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD---------VAKATRKLDDLAERV-GWRWRLVW 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHH-CCCHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC---------HHHHHHHHHHHhccC-cchHHHHH
Confidence 788999999999999871 112334455666555 444555 999999999988743 24678899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
.+-.+|...|++++|...|++.. ... | +...|..+-.+|.+.|+.++ .. ...|..+-.++.+.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al-~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVL-DTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH-HHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc
Confidence 99999999999999999999987 543 5 45668888888999999887 66 22377788889999
Q ss_pred CCHHHHHHHHHHHHHcccCCCh
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
|++++|...+++..+ ..|+.
T Consensus 548 g~~~~A~~~~~~al~--l~P~~ 567 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPP--TSRHF 567 (681)
T ss_dssp TCHHHHHHHHHTSCT--TSTTH
T ss_pred CCHHHHHHHHHhhcc--cCccc
Confidence 999999999998754 34553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0037 Score=54.35 Aligned_cols=153 Identities=9% Similarity=0.044 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|+.....|...|++++|+..|.+..+. |-.+. ..+|+.+-..+...+. +++|...|++-.+ .
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR--------MPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------GGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHHHc
Confidence 8888889999999999999999987643 21111 3467777676665442 5666666665433 2
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCC-CcccHHHHHHHHHhcCCHHHhhc--------HH--
Q 048764 96 NVIP-NEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVP-RLRTYDPALFCFCENLEAQKAYE--------EQ-- 160 (295)
Q Consensus 96 g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~--------e~-- 160 (295)
|-++ -..+|+.+-..|.. |++++|+..|++... ..|-.+ ...+|+.+-..|.+.|+.++|.. .+
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 2211 14678888888988 999999999998762 111111 13567888889999999999988 00
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 161 --------EITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 161 --------~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.|..+...+...|++++|...+++..
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 24455566677799999999999977
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0083 Score=53.45 Aligned_cols=152 Identities=13% Similarity=0.091 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C---CCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC---
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN--F---RLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN--- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g--~---~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~--- 95 (295)
.|..+-..|...|+++.|+..|.+..+.- . .+. ..+++.+-..+...+. +++|...|++..+.
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ--------YEDAISHFQKAYSMAEA 216 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999876431 1 121 3445555555555443 99999998887651
Q ss_pred -CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc----CCCC-CcccHHHHHHHHHhcCCHHHhhc----------
Q 048764 96 -NVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEF----NVVP-RLRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 96 -g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~----gi~P-~~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
+-.+ ...+|+.+-..|...|++++|...|++.. .. +-.| ...++..+-..|.+.|+.++|..
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI-AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2111 12478889999999999999999999877 31 3223 34568888889999999999988
Q ss_pred -------HHHHHHHHHHHHhcCC---HHHHHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTGR---VEKVYQYLQKL 185 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g~---~~~a~~ll~~m 185 (295)
...+..+-..+...|+ +++|..++++.
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 296 KAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 1114566666777888 77777777765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0091 Score=45.32 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=73.4
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
..|+. .+..+-..+.+.|++++|+..|++..... +.+...|..+-..+...+. +++|...|+......
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGL--------YEQALQSYSYGALMD- 82 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcC-
Confidence 34544 56666777888999999999999887653 3355556655554444442 999999999987743
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+-+...|..+-.+|...|++++|...|+...
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2355677888888999999999999999877
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0094 Score=46.47 Aligned_cols=100 Identities=6% Similarity=-0.031 Sum_probs=64.2
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
...|+. .|..+=..+.+.|++++|+..|++..... +-+...|..+-..+...+. +++|...|+...+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~--------~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQ--------FQQAADLYAVAFALG 100 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHhhC
Confidence 344544 56666666777777888887777776542 3345555555554444332 777777777776633
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+-+...|..+-.+|...|++++|...|+...
T Consensus 101 -P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 101 -KNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp -SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1245667777777777777777777777766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0083 Score=56.74 Aligned_cols=141 Identities=9% Similarity=-0.033 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
.|++++|+..|++..+.. +-+...|..+-..+ ..++ +++|...|++..+.. +-+..+|..+-..|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGD---------TTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 478899999999887542 33466677776644 4455 999999999988753 24578899999999999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc---CCHHHHH
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT---GRVEKVY 179 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~---g~~~~a~ 179 (295)
|++++|.+.|++.. ... .-+...|..+-..|.+.|+.++|.. ...+..+...+... |+.++|.
T Consensus 71 g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 71 QRHAEAAVLLQQAS-DAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp TCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred CCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999988 543 2345678888999999999999988 22367778888888 9999999
Q ss_pred HHHHHHHHcc
Q 048764 180 QYLQKLRSTV 189 (295)
Q Consensus 180 ~ll~~m~~~~ 189 (295)
+.+++..+..
T Consensus 149 ~~~~~al~~~ 158 (568)
T 2vsy_A 149 AQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999987643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.033 Score=41.51 Aligned_cols=103 Identities=11% Similarity=0.035 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
.|..+-..+.+.|++++|+..|++..+. .|+ ...|..+-..+...+. +++|...|+...+.. +.+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~-~~~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLED--------YDKAETEASKAIEKD-GGD 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHhhC-ccC
Confidence 8888889999999999999999998875 455 4555555554544442 999999999987742 246
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD 141 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~ 141 (295)
...|..+...|...|++++|...|++.. .. .|+.....
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~ 136 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCV-SL--EPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH--CSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCcHHHH
Confidence 7888899999999999999999999987 43 46544333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.073 Score=43.32 Aligned_cols=153 Identities=10% Similarity=-0.010 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+=..|...+++++|+..|.+..+.| +...+..|=.++..++.+ ...++|...|+.-.+.| +..++
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~-----~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQ-----ADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTS-----CCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC-----CCHHHHHHHHHHHHHCC---CHHHH
Confidence 55556666777899999999999998877 345555555555554210 02899999999998765 56777
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHhhhhcCCC-CCcccHHHHHHHHHh----cCCHHHhhc------H-----HHHHH
Q 048764 105 TSVARLAAS----KKDSDYAFELIKRMNNEFNVV-PRLRTYDPALFCFCE----NLEAQKAYE------E-----QEITA 164 (295)
Q Consensus 105 ~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~-P~~~ty~~ll~~~~~----~g~~~~A~~------e-----~~y~~ 164 (295)
..|-..|.. .+++++|+.+|+... ..|-. .+...+..|-..|.. .++.++|+. + ..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 778778877 889999999999988 66521 015566667667776 667777766 1 11233
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHHcc
Q 048764 165 LLKVSAGT-G-----RVEKVYQYLQKLRSTV 189 (295)
Q Consensus 165 ll~~~~~~-g-----~~~~a~~ll~~m~~~~ 189 (295)
|-..|... | +.++|...+++-.+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 33333322 2 6777777777766654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.019 Score=44.11 Aligned_cols=100 Identities=9% Similarity=-0.012 Sum_probs=75.8
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
...|+. .+..+-..+.+.|++++|+..|.+..... +.+...|..+-..+...+. +++|...|+......
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQ--------YDLAIHSYSYGAVMD 85 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcC
Confidence 344554 77777788889999999999999887653 3456666665555555442 999999999987743
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+-+...|..+-.+|...|++++|...|+...
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2356778888889999999999999999877
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0053 Score=46.32 Aligned_cols=137 Identities=9% Similarity=-0.033 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFR-LS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~-pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
+|..+-..|...|++++|+..|.+..+.... ++ ..++..+-..+...+. +++|...|++... .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--------FETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHh
Confidence 7888888899999999999999987643211 11 1345555554444442 8999999988655 1
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCC
Q 048764 96 NVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGR 174 (295)
Q Consensus 96 g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~ 174 (295)
+-++ ...++..+-..+...|++++|...+++.. ...-..+..... . ..+..+-..+...|+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~--~---------------~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELKDRIGE--G---------------RACWSLGNAYTALGN 144 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHH--H---------------HHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHccchHhH--H---------------HHHHHHHHHHHHccC
Confidence 1111 14567888888999999999999998876 321011100000 1 114556666777888
Q ss_pred HHHHHHHHHHHHH
Q 048764 175 VEKVYQYLQKLRS 187 (295)
Q Consensus 175 ~~~a~~ll~~m~~ 187 (295)
+++|...+.+...
T Consensus 145 ~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 145 HDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.01 Score=52.48 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS--------------LHHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd--------------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.|..+=..|.+.|++++|+..|++..+..-... ...|..+-..+...+. +++|...|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~A~~~~~ 220 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------FSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHH
Confidence 788888889999999999999999886542221 4666666664444442 999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 91 QMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 91 ~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
...+.. +.+...|..+-.+|...|++++|...|++.. ..
T Consensus 221 ~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l 259 (336)
T 1p5q_A 221 KALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVL-QL 259 (336)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH
Confidence 988743 3468889999999999999999999999987 44
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.02 Score=43.71 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|+...+.. +.+..+|..+...+...|++++|...|+... ... |+ ...|
T Consensus 29 ~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~-------------------- 84 (166)
T 1a17_A 29 YENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD--KKYIKGY-------------------- 84 (166)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHH--------------------
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC--cccHHHH--------------------
Confidence 899999999887643 2467888888889999999999999999887 443 43 2333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+-..+...|++++|...+.+...
T Consensus 85 --~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 85 --YRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344445556666666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.061 Score=47.31 Aligned_cols=153 Identities=11% Similarity=-0.027 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C--CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC--CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFR--L--SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN--NV 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~--p--d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~--g~ 97 (295)
.+..+-..+...|++++|...|++.....-. + ...+|..+-. ....++ +++|...+++.... ..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD---------LDNARSQLNRLENLLGNG 207 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcc
Confidence 6677778889999999999999988754321 1 2345555555 344455 99999999987652 11
Q ss_pred CCCHHHHH----HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC---cccHHHHHHHHHhcCCHHHhhc---------H--
Q 048764 98 IPNEALVT----SVARLAASKKDSDYAFELIKRMNNEFNVVPR---LRTYDPALFCFCENLEAQKAYE---------E-- 159 (295)
Q Consensus 98 ~pd~~ty~----~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~---~~ty~~ll~~~~~~g~~~~A~~---------e-- 159 (295)
........ .++..+...|++++|..+++... .....+. ...+..+...+...|+.++|.. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 286 (373)
T 1hz4_A 208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 286 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 11111111 23345778999999999999987 4332211 1245677788889999999887 0
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 160 -------QEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 160 -------~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+..+-.++...|+.++|...+.+...
T Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 287 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 0134445557788999999999888654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.02 Score=41.99 Aligned_cols=94 Identities=7% Similarity=0.030 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+=..+.+.|++++|+..|++..+.. +.+...|..+-..+...+. +++|...|+...+.. +-+...|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS--------FPEAIADCNKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-CCcHHHH
Confidence 67777788899999999999999988653 4456667777665544442 999999999987743 2457788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+-.++...|++++|...|++..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHH
Confidence 899999999999999999999876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.025 Score=59.07 Aligned_cols=143 Identities=12% Similarity=0.158 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-CC-------------------CcchHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-DP-------------------SLKDSALRH 84 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~~-------------------~~~~~~~~~ 84 (295)
.|..++..|.+.|++++|++.|...++.. ++....+-+...|++.+. +. ....|.+++
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Confidence 66667777777788888887777655543 222222234444444331 00 001122333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------ 158 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------ 158 (295)
|..+|... ..|..+...|.+.|+++.|.+.+++-. +..+|.-+-.+|...|++..|..
T Consensus 1214 A~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A 1214 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV 1277 (1630)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 33333331 244444444444444444444444322 22344444444444444444444
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...+..++..|.+.|.+++|..+++.-
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123678888899999999999888653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0033 Score=54.14 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|+...+.. +-+...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~ 75 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELD-GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 67777788999999999999999988753 3356666666665544442 999999999987743 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+-.+|...|++++|...|....
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.022 Score=42.16 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|.+..+.. +.+...|..+-..+...+. +++|...|+...+.. +.+...|
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~ 80 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELD-GQSVKAH 80 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-chhHHHH
Confidence 78888888999999999999999987664 3355666666665544442 999999999988743 2467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+-..|...|++++|...|....
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999876
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.015 Score=45.47 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-HHcCCCCCCcchHHH--HHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYL-CSNSATDPSLKDSAL--RHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~-~~~~~~~~~~~~~~~--~~a~~lf~~M~~~g~~pd~ 101 (295)
.|..+-..|...|++++|+..|++..+.. +.+...+..+-.+ +...+. + ++|...|+...+.. +-+.
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~--------~~~~~A~~~~~~al~~~-p~~~ 115 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQ--------HMTAQTRAMIDKALALD-SNEI 115 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTT--------CCCHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHhC-CCcH
Confidence 66666777777777777777777766542 2244444444443 433331 5 67777777776632 2345
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
..|..+...|...|++++|...|+... .. .|+......++..
T Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 116 TALMLLASDAFMQANYAQAIELWQKVM-DL--NSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--CCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH-hh--CCCCccHHHHHHH
Confidence 666777777777777777777777766 33 3444443344433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0039 Score=49.26 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-H-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYL-C-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~-~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+-..+.+.|++++|+..|+...... |+...+..+..+ + .... ..+|...|+...+.. +-+..
T Consensus 42 a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~---------~~~a~~~~~~al~~~-P~~~~ 109 (176)
T 2r5s_A 42 VKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA---------ESPELKRLEQELAAN-PDNFE 109 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT---------SCHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHhC-CCCHH
Confidence 78888888999999999999999876543 244333322222 1 2122 224677888876632 23578
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC---cccHHHHHHHHHhcCCHHHh
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR---LRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~---~~ty~~ll~~~~~~g~~~~A 156 (295)
.+..+-..+...|++++|...|++.. .. .|+ ...+..+...|...|+.++|
T Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~l-~~--~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 110 LACELAVQYNQVGRDEEALELLWNIL-KV--NLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-TT--CTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH-Hh--CcccChHHHHHHHHHHHHHhCCCCcH
Confidence 89999999999999999999999988 54 344 33555555555555555444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.016 Score=51.60 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN-----FRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS---- 94 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g-----~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~---- 94 (295)
.|..+-..|...|+++.|+..|.+..+.. ..+. ..+++.+-..+...+. +++|...|++..+
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH--------YDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHH
Confidence 78888889999999999999999876431 1222 3445555555555543 8999998887655
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhh----cCCCCCcccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 95 NNVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNE----FNVVPRLRTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 95 ~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----~gi~P~~~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
.+-.+ ...+++.+-..|...|++++|...|++.. . .+-.....++..+-..|.+.|+.++|..
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA-KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 12211 23578888889999999999999999877 3 1222235667788889999999999988
Q ss_pred ------HHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 048764 159 ------EQEITALLKVSAGTGR---VEKVYQYLQK 184 (295)
Q Consensus 159 ------e~~y~~ll~~~~~~g~---~~~a~~ll~~ 184 (295)
...+..+-..+...++ +.+|..++++
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 1124555555666777 7777777766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0018 Score=47.54 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=69.5
Q ss_pred hcCCHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048764 35 KSKDLATAISLYESALSLNF--RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAA 112 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~ 112 (295)
..|++++|+..|++..+.+. +-+...|..+-..+...+. +++|...|++..+.. +-+..+|..+..++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------YRKAEAVLANGVKQF-PNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 35788899999999887641 2234555555554544442 999999999988753 235778888999999
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 113 SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
..|++++|...|++......-.|+...|...|..|.
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999999999987723333344455555555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.032 Score=40.64 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=66.1
Q ss_pred CCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC
Q 048764 55 RLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV 133 (295)
Q Consensus 55 ~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi 133 (295)
+.+...|..+-..+ ..++ +++|...|++..+.. +.+..+|..+...|...|++++|..+|++.. ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~-- 79 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGD---------YPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI-QL-- 79 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTC---------SHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HH--
T ss_pred cccHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-Hh--
Confidence 33445555555544 3444 888999999887643 2367888888888888999999999998887 43
Q ss_pred CCC-cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 134 VPR-LRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 134 ~P~-~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.|+ ... |..+-..+...|++++|...+.+...
T Consensus 80 ~~~~~~~----------------------~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 80 EPTFIKG----------------------YTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp CTTCHHH----------------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHH----------------------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 243 223 33444556667777777777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.009 Score=46.85 Aligned_cols=108 Identities=6% Similarity=0.036 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH-HHhcCCH--H
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC-FCENLEA--Q 154 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~-~~~~g~~--~ 154 (295)
..|.+++|...|+...+.. +.+...|..+-..|...|++++|...|+... ... ..+...|..+... |...|+. +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQAL-QLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4456888888888876643 3467899999999999999999999999987 443 2345566666677 7788997 8
Q ss_pred Hhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 155 KAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 155 ~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+|.. ...|..+-..+...|++++|...+.+....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8877 122667777889999999999999998764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0083 Score=58.48 Aligned_cols=120 Identities=10% Similarity=-0.067 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+-..+.+.|++++|+..|+++.+.. +-+...|..+-. +...++ +++|...|++..+.. +-+...
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~---------~~~A~~~~~~al~l~-P~~~~~ 503 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGD---------YDSATKHFTEVLDTF-PGELAP 503 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHS-TTCSHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhC-CCChHH
Confidence 77788888999999999999999988653 335556666655 444455 999999999988743 235678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|..+-..|.+.|++++ .+.|++.. ... .-+...|..+-.+|.+.|+.++|..
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVW-STN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHH-HhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999999 99999987 543 2345678888899999999999988
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.018 Score=41.71 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=66.0
Q ss_pred HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 58 LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
...+..+-..+...+. +++|...|+...... +.+...|..+...+...|++++|...++... .. .|+.
T Consensus 12 ~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~--~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVEN--------FEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CI--DPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTC
T ss_pred hHHHHHHHHHHHHccC--------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH-hc--CccC
Confidence 3455555554433332 889999999887643 3467788888888889999999999998887 44 3432
Q ss_pred -ccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 138 -RTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 138 -~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.. |..+-..+...|++++|...+.+....
T Consensus 80 ~~~----------------------~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 80 SKA----------------------YGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHH----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH----------------------HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 22 344555566777777888777776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.036 Score=57.92 Aligned_cols=140 Identities=11% Similarity=-0.018 Sum_probs=94.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 22 PETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
+..+|..+=.++.+.|++++|+..|.+. -|...|.-++..|.+.+. +++|.+.|..-.+.. ++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGk--------yEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN--------WEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhc--ccc
Confidence 3447777777777788888888887553 345666667776666553 778887777654432 333
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhcCCHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----EQEITALLKVSAGTGRVEK 177 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~g~~~~ 177 (295)
...+.++.+|++.+++++...++ . .|+...|..+-..|...|+.++|.. ...|..+...+++.|++++
T Consensus 1168 ~Idt~LafaYAKl~rleele~fI---~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEFI---N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHHH---h-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHH
Confidence 34445777777777776433222 2 3455566667777777777777777 5568888888888888888
Q ss_pred HHHHHHHH
Q 048764 178 VYQYLQKL 185 (295)
Q Consensus 178 a~~ll~~m 185 (295)
|.+..++-
T Consensus 1240 AIEaarKA 1247 (1630)
T 1xi4_A 1240 AVDGARKA 1247 (1630)
T ss_pred HHHHHHHh
Confidence 88887764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.2 Score=46.05 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=7.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.++.++|..++++..+
T Consensus 236 ~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3445555555544433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.1 Score=44.60 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC-CCc----ccHHHHHHHHHhcC
Q 048764 82 LRHGFRVFDQMLSNN-VIPNE----ALVTSVARLAASKKDSDYAFELIKRMNNEFNVV-PRL----RTYDPALFCFCENL 151 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g-~~pd~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~-P~~----~ty~~ll~~~~~~g 151 (295)
+++|..++++..+.. ..|+. ..|..+...+...|++++|+..|++.. ..... ++. .+|+.+-..|...|
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 999999999988732 23442 234456677777889999999999988 53322 332 26888889999999
Q ss_pred CHHHhhc-------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 152 EAQKAYE-------------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 152 ~~~~A~~-------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+.++|.. ...|..+-..|.+.|++++|..++.+...
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999988 11267788889999999999999998655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.041 Score=39.76 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------H----------H-HHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------E----------Q-EIT 163 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e----------~-~y~ 163 (295)
+|..+...+...|++++|..+|+... ... ..+...|..+...|...|+.++|.. . . .|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34444445555555555555555544 322 1233344444445555555555544 0 1 155
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIE 201 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~ 201 (295)
.+-..+...|++++|...+.+.... .|++.....+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 6667788899999999999998774 45555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.041 Score=40.98 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIE 201 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~ 201 (295)
|..+=.++...|++++|.+.+++-.. ..|++.+...|.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~ 123 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence 44455567788999999999988655 356766655543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.011 Score=45.57 Aligned_cols=121 Identities=9% Similarity=0.011 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
..|.+++|...|+..... .|+ ...+-.+-..|.+.|++++|.+.|++.. ... .-+...|..+-..|.+.|+.++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-NVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 456799999999887542 233 3456678889999999999999999988 543 23456788888999999999999
Q ss_pred hc------------HHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcccCCCh-hHHHHHHHHH
Q 048764 157 YE------------EQEITALLKVSAGTGRVEKVYQ-YLQKLRSTVRCVNE-ETGKIIEDWF 204 (295)
Q Consensus 157 ~~------------e~~y~~ll~~~~~~g~~~~a~~-ll~~m~~~~~~p~~-~t~~~l~~~~ 204 (295)
.. ...|..+-..+.+.|+.++|.. ++++..+ ..|+. ..+.+....+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHH
Confidence 98 2226777778889999876654 4566554 35644 4455544444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.24 Score=45.54 Aligned_cols=109 Identities=4% Similarity=-0.077 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS-- 113 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~-- 113 (295)
.+++++|+..|++..+.| +...+..|-.++..+.. ..+..++|.+.|+...+.| +...+..|-..|..
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g----~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDG----VTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGL 197 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS----SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCC
Confidence 455566666665555544 22333333333332110 0012566666666655543 44555555555555
Q ss_pred --CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc
Q 048764 114 --KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE 158 (295)
Q Consensus 114 --~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~ 158 (295)
.+++++|+.+|..-. ..| +...+..|-..|.. .++.++|..
T Consensus 198 g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp SSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 566666666666555 433 23344444444443 455555554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.031 Score=49.29 Aligned_cols=118 Identities=8% Similarity=-0.067 Sum_probs=86.5
Q ss_pred HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHH
Q 048764 58 LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN--------------EALVTSVARLAASKKDSDYAFE 122 (295)
Q Consensus 58 ~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd--------------~~ty~~li~~~~~~g~~~~A~~ 122 (295)
...|..+-. ++..+. +++|...|++..+..-... ..+|..+-..|.+.|++++|+.
T Consensus 147 a~~~~~~g~~~~~~g~---------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 147 STIVKERGTVYFKEGK---------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp HHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555 444555 9999999999877432211 5899999999999999999999
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048764 123 LIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKV-YQYLQKLR 186 (295)
Q Consensus 123 l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a-~~ll~~m~ 186 (295)
.|+... ... ..+...|..+-.+|...|+.++|.. ...+..+-.++.+.|+.++| ..++..|.
T Consensus 218 ~~~~al-~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 218 SCNKAL-ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 554 3356678888888889999988887 22266666777777888777 44555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.047 Score=43.14 Aligned_cols=151 Identities=10% Similarity=-0.067 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS----LNFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~----~g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|..+-..|...|++++|+..|++..+ .+..| ...++..+-..+...+. +++|...|++... .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------WDAARRCFLEERELLASL 99 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHc
Confidence 888888999999999999999998765 22333 23445555444444442 8899988887655 2
Q ss_pred CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCC--cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHH
Q 048764 96 NVIP--NEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPR--LRTYDPALFCFCENLEAQKAYEEQEITALLKV 168 (295)
Q Consensus 96 g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~--~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~ 168 (295)
+-.| ...++..+-..+...|++++|...|++... ..+ .|. ..++..+-..+...|+.++|.. .|...+..
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~ 176 (203)
T 3gw4_A 100 PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNLLEAQQ--HWLRARDI 176 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCHHHHHH--HHHHHHHH
Confidence 2111 245678888899999999999999998762 111 111 2335677778889999988854 23444555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048764 169 SAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~ 186 (295)
+.+.|+....-.++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (203)
T 3gw4_A 177 FAELEDSEAVNELMTRLN 194 (203)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhccc
Confidence 556666555444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.049 Score=38.45 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVS 169 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~ 169 (295)
..|..+...+...|++++|..+|+... ... ..+...+..+...|...|+.++|.. ...|..+-.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAI-KLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH-HHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445555566666666666666666665 332 1234455555556666666666665 11256667778
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 048764 170 AGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~~~ 188 (295)
...|++++|...+.+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 8899999999999887653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.032 Score=42.87 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEA 153 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~ 153 (295)
+++|.+.|++..+.. +-+..+|..+-..|...|++++|...|+... .. .|+ ...|..+-..|.+.|+.
T Consensus 47 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 47 YDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSV-EL--NPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCh
Confidence 455555555444321 1234444444445555555555555554444 22 232 23344444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.032 Score=41.26 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHH
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALL 166 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll 166 (295)
.+...|..+-..+...|++++|...|.... ... ..+...|..+-..|...|+.++|.. ...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHH-hhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 456677777777778888888888887766 433 2234566677777777787777776 12266677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 048764 167 KVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++...|++++|...+.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7788899999999999887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.034 Score=43.24 Aligned_cols=91 Identities=9% Similarity=-0.088 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKV 168 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~ 168 (295)
...+..+-..+.+.|++++|...|+... ... .-+...|..+-.+|...|+.++|.. ...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLC-IYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3456666667777788888888887776 443 2234556666677777787777777 1126677778
Q ss_pred HHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 169 SAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
|...|++++|...|++.... .|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 88999999999999998774 45554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0068 Score=52.23 Aligned_cols=149 Identities=9% Similarity=-0.031 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+-.+-..+.+.|++++|..+|++..+.. +-+...+..|-.++...+. +++|..+|+..... .|+....
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~--------~~~A~~~l~~~~~~--~p~~~~~ 187 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNR--------SEDAEAVLXTIPLQ--DQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC--------HHHHHHHHTTSCGG--GCSHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCC--------HHHHHHHHHhCchh--hcchHHH
Confidence 66677777889999999999999988653 3355666666665555442 99999999988664 3554433
Q ss_pred HHHHH-HHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HH------HHHHHHHHH
Q 048764 105 TSVAR-LAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQ------EITALLKVS 169 (295)
Q Consensus 105 ~~li~-~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~------~y~~ll~~~ 169 (295)
..... .+...++.+.|...|++.. ... ..+...+..+-..|...|+.++|.. .| .+..|...+
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al-~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQV-AEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHH-hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 33322 3566778888999998887 543 3346678888889999999999998 11 278889999
Q ss_pred HhcCCHHHHHHHHHHHH
Q 048764 170 AGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~ 186 (295)
...|+.++|...+++-.
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 99999999888777643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.12 Score=38.24 Aligned_cols=96 Identities=15% Similarity=0.014 Sum_probs=65.9
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN----EALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
+...+..+-..+...+. +++|...|++..+. .|+ ..+|..+...|...|++++|...|+... ..
T Consensus 27 ~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGD--------YGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI-EK- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-
T ss_pred HHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-hh-
Confidence 44555555554443332 88999999988764 355 6778888888888999999999998877 43
Q ss_pred CCCCc-ccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 133 VVPRL-RTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 133 i~P~~-~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.|+. .. |..+-.++...|++++|...+.+...
T Consensus 95 -~~~~~~~----------------------~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 95 -DGGDVKA----------------------LYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp -TSCCHHH----------------------HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CccCHHH----------------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3432 22 33444556677888888888887765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.13 Score=37.23 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=69.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSL---HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN---- 100 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~---~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd---- 100 (295)
+-..+.+.|++++|+..|++..+.. +.+. ..+..+-. +...++ +++|...|+...+.. |+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~---------~~~A~~~~~~~~~~~--p~~~~~ 75 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRN---------FQLAEAQFRDLVSRY--PTHDKA 75 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHC--TTSTTH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHC--CCCccc
Confidence 4456778999999999999988653 1222 24444444 344454 999999999988743 33
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
..++..+-..+...|++++|...|+... ... |+...
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~--p~~~~ 111 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVA-TQY--PGSDA 111 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--TTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC--CCChH
Confidence 5678888889999999999999999988 543 65443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.055 Score=43.21 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC--------------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLS--------------LHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd--------------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
.|..+-..+.+.|++++|+..|.+..+..- .|+ ...|..+-..+...+. +++|...|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~ 111 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------YPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHH
Confidence 666777788899999999999999886421 121 1455555554444442 99999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+...+.. +.+..+|..+-.+|...|++++|...|+...
T Consensus 112 ~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 112 SKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9887742 3467888888899999999999999999877
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.1 Score=50.78 Aligned_cols=166 Identities=8% Similarity=0.005 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------CCC-----------CHHhHHHHHHHHHcCCCCCCcchHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN----------FRL-----------SLHHFNALLYLCSNSATDPSLKDSALR 83 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g----------~~p-----------d~~ty~~ll~~~~~~~~~~~~~~~~~~ 83 (295)
.|-..+...-+.|+++.|..+|+.+.... ++. ....|...+++..+.+. ++
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--------l~ 451 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--------LA 451 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--------HH
Confidence 57777888889999999999999988642 221 12356666675544332 89
Q ss_pred HHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--
Q 048764 84 HGFRVFDQMLSN-N-VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE-- 158 (295)
Q Consensus 84 ~a~~lf~~M~~~-g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~-- 158 (295)
.|+.+|....+. + ..+...+..+.|.-.. .++++.|..+|+... +. -|+. .-+...++.....|+.+.|..
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~L-k~--~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGL-KY--FATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHH-HH--HTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHH-HH--CCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999876 3 2344444444444222 356999999999987 44 3433 344577777778899988887
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 159 -------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 -------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..-|...++.=.+.|+.+.+..+.++|.+. .|+.....++.+-|
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 123888888888899999999999999885 56666555555444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.083 Score=47.31 Aligned_cols=155 Identities=10% Similarity=-0.003 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHH---hHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL-NFRLSLH---HFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~---ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.+..+...|.+.|++++|..+|.++... +..++.. ....++..+ ...+ ..+.|..++.+... .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD--------SLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS--------CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999999987632 2222322 233344433 2233 28888888887644 3
Q ss_pred CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhh-cCC--CCC-cccHHHHHHHHHhcCCHHHhhc------------
Q 048764 96 NVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNE-FNV--VPR-LRTYDPALFCFCENLEAQKAYE------------ 158 (295)
Q Consensus 96 g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-~gi--~P~-~~ty~~ll~~~~~~g~~~~A~~------------ 158 (295)
+..+. ..++..|...|...|++++|..++++.... .+. .|. ..+|..+...|...|+.++|..
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 33343 567888999999999999999999987621 121 121 3468888899999999999887
Q ss_pred -H------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -E------QEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -e------~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
. ..|..+...+...+++++|...+.+..+
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 209 YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0 1155666667788999999887776644
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.02 Score=40.32 Aligned_cols=87 Identities=5% Similarity=-0.037 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|.+++|...|+...+.. +.+..+|..+-..+...|++++|...|++.. .. .|+....
T Consensus 19 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~--~~~~~~~------------------ 76 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NV--IEDEYNK------------------ 76 (112)
T ss_dssp SCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--SCCTTCH------------------
T ss_pred hhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hh--CcccchH------------------
Confidence 345667777777665532 2345666666667777777777777777666 33 2330000
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 048764 159 EQEITALLKVSAGT-GRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 e~~y~~ll~~~~~~-g~~~~a~~ll~~m~~~ 188 (295)
..|..+-..+... |++++|.+.+.+....
T Consensus 77 -~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 77 -DVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 0145566667788 8888888888887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.037 Score=40.57 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
|..+-..+.+.|++++|...|++.. ... ..+...|..+-.+|.+.|+.++|.. ...|..+-.++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3333344444444444544444444 221 1123334444444444444444444 1115555666777
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.|++++|...+.+...
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 8888888888887655
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.013 Score=45.13 Aligned_cols=80 Identities=9% Similarity=-0.047 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|+...... +.+...|..+-.+|...|++++|...|+... .. .|+. ..|
T Consensus 37 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l--~p~~~~~~-------------------- 92 (148)
T 2vgx_A 37 YEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGA-VM--DIXEPRFP-------------------- 92 (148)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCTHHH--------------------
T ss_pred hHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc--CCCCchHH--------------------
Confidence 889999998877643 2467788888888888999999999998887 43 3442 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+-.++...|++++|...|.+..+
T Consensus 93 --~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 --FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445666677777776666544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.061 Score=39.97 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC--CCCC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN--VIPN-- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g--~~pd-- 100 (295)
.+..+=..+.+.|++++|+..|++..+.. +-+...|+.+-..+...+. +++|...|+...+-. ..++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKK--------FAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhh--------HHHHHHHHHHHHHhCcccchhhH
Confidence 67777788999999999999999988753 3456667766665554442 999999999876521 2222
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 101 --EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 101 --~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
..+|..+-..+...|++++|++.|++-. .. .||..+
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal-~~--~~~~~~ 118 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSL-SE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--SCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--CcCHHH
Confidence 2467777788889999999999999877 43 355433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.049 Score=40.52 Aligned_cols=88 Identities=10% Similarity=-0.009 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
.|...=..|.+.|++++|++.|++.. ... ..+...|..+-.+|.+.|+.++|.. ...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAV-KRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34444555666666666666666655 332 2234455566666666666666666 112666777788
Q ss_pred hcCCHHHHHHHHHHHHHcccCCCh
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
..|++++|...|++..+. .|+.
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HCCCHHHHHHHHHHHHHH--CcCC
Confidence 889999999999987663 5554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.038 Score=42.67 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKV 168 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~ 168 (295)
...|..+-..+...|++++|+..|++.. ... .-+...|..+-.+|.+.|+.++|.. ...|..+-.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQAL-SIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455566666666777777777776665 332 1244556666666666777666666 1126667777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 048764 169 SAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~~~ 188 (295)
+...|++++|...|.+..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88889999999988887664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.064 Score=49.47 Aligned_cols=117 Identities=15% Similarity=0.007 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS--------------LHHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd--------------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.|..+=..|.+.|++++|+..|++..+..-... ...|..+-..+...+. +++|...|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~A~~~~~ 341 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--------YTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHH
Confidence 777788889999999999999999876421111 4556555554444442 999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCH
Q 048764 91 QMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEA 153 (295)
Q Consensus 91 ~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~ 153 (295)
..++.. +.+...|..+-.+|...|++++|+..|+... . +.|+. ..|..+-..+.+.|+.
T Consensus 342 ~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~--l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 342 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL-E--VNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T--TC----CHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHHHHH
Confidence 988743 3467889999999999999999999999987 4 34543 3344444443333333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.025 Score=52.66 Aligned_cols=115 Identities=12% Similarity=0.032 Sum_probs=84.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARL 110 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~ 110 (295)
..+.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|++..+.. +-+..+|..+-.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 83 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIKGYYRRAAS 83 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44667899999999999988763 3356777777775555442 999999999998853 3467889999999
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHH--HHhcCCHHHhhc
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFC--FCENLEAQKAYE 158 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~--~~~~g~~~~A~~ 158 (295)
|...|++++|...|++.. .. .|+. ..+..+-.+ +.+.|+.++|..
T Consensus 84 ~~~~g~~~eA~~~~~~al-~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 84 NMALGKFRAALRDYETVV-KV--KPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHTCHHHHHHHHHHHH-HH--STTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987 44 3443 344444444 677777777766
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.043 Score=41.42 Aligned_cols=84 Identities=8% Similarity=-0.068 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
.+..+-..+...|++++|..+|+... ... ..+...|..+-.+|.+.|+.++|.. ...|..+-.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALC-MLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34444555566666666666666665 332 1233445555556666666666665 111556666778
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048764 171 GTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~ 188 (295)
..|++++|...|++....
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.06 Score=46.02 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CC
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNF---RLS--LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NN 96 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~---~pd--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g 96 (295)
+..+-..+...|++++|+..|++..+... .+. ..+|+.+-..+...+. +++|...|++..+ .+
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~kal~~~~~~~ 189 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY--------LKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHhcC
Confidence 34455567788999999999999875322 111 3467777665555442 9999999998763 21
Q ss_pred CCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCC-cccHHHHHHHHHhcCCHHHh
Q 048764 97 VIP--NEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPR-LRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 97 ~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~-~~ty~~ll~~~~~~g~~~~A 156 (295)
-.+ +..+|+.+-..|...|++++|+.+|++... ..+..+. ..+|..+-..|.+.|+.++|
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 111 126899999999999999999999998762 1111111 45677778888899998887
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.063 Score=39.55 Aligned_cols=94 Identities=12% Similarity=0.030 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+-.+-..+.+.|++++|+..|++..+.. +-+...|..+-.++...+. +++|...|+...+.. +-+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~-P~~~~~~ 88 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLD-PKDIAVH 88 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 45555667889999999999999988753 3355555555555555443 999999999987743 2357788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+-..|...|++++|+..|+...
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999999999999999887
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0061 Score=48.99 Aligned_cols=115 Identities=9% Similarity=-0.040 Sum_probs=64.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CC---C------
Q 048764 32 SCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IP---N------ 100 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~p---d------ 100 (295)
.....++++.+...|+.-... ..-....+..+-. ++..+. +++|...|++..+..- .| .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNE---------INEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 334445555555555422111 0112233444444 444555 9999999999887321 12 1
Q ss_pred -----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 101 -----EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 101 -----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..+|..+-..|...|++++|+..++... ... ..+...|..+-.+|...|+.++|..
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVL-KID-KNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcccHHHHHH
Confidence 2788889999999999999999999988 543 2234445555555555555555433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.13 Score=46.09 Aligned_cols=149 Identities=11% Similarity=-0.040 Sum_probs=102.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC-CH---------------HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRL-SL---------------HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~p-d~---------------~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
..+.+.|++++|++.|.++.+..... +. ..+..|..+|...+. +++|.+.|.....
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------KDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
Confidence 34677899999999999988654221 11 235666675655442 9999999998765
Q ss_pred -CCCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCC-cccHHHHHHHHHhcCCHHHhhc-------
Q 048764 95 -NNVIPNEA----LVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPR-LRTYDPALFCFCENLEAQKAYE------- 158 (295)
Q Consensus 95 -~g~~pd~~----ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------- 158 (295)
.+..++.. +.+.+-..+...|+++.|..++..... ..+..+. ..++..|...|...|+.++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 12222222 222333334457899999999987752 2232333 3567788899999999999988
Q ss_pred -----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -----------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...|..+.+.|...|++++|..++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11288889999999999999999988654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.1 Score=45.10 Aligned_cols=141 Identities=10% Similarity=-0.099 Sum_probs=93.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-
Q 048764 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSL-HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN- 100 (295)
Q Consensus 23 ~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd- 100 (295)
+..+-.....+...|++++|..+|+.+...+ |+. ..|+.-+-++..++ +++|+..|+...... .|.
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r---------~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAER---------WTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTC---------HHHHHHHHTTGGGCS-CHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCC---------HHHHHHHHHHhhccC-Cccc
Confidence 3344556777889999999999999887654 443 33333332444454 999999998554421 111
Q ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHH
Q 048764 101 -EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 101 -~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~ 179 (295)
...+..+=.++...|++++|+..|++-. .....|...+ .. ...+-.++.+.|+.++|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~~P~~~~--da------------------~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAN-DSPAGEACAR--AI------------------AWYLAMARRSQGNESAAV 228 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTTTTTTHH--HH------------------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCCccccH--HH------------------HHHHHHHHHHcCCHHHHH
Confidence 2367777888999999999999999987 4333255311 01 122334467889999999
Q ss_pred HHHHHHHHcccCCChhHHH
Q 048764 180 QYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 180 ~ll~~m~~~~~~p~~~t~~ 198 (295)
.+|+++... .|+...+.
T Consensus 229 ~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 229 ALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHhc--CCcHHHHH
Confidence 999999874 45533333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.023 Score=49.23 Aligned_cols=125 Identities=11% Similarity=0.100 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|+.+-..|.+.|++++|+..|++..+. |-.. -..+|+.+-.++.. +. +++|...|++... .
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~--------~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD--------LSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC--------HHHHHHHHHHHHHHHHhC
Confidence 8888888999999999999999987533 2211 13456666556655 42 8889888887654 1
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhh---cCCCCCc-ccHHHHHHHHHhcCCHHHhhc
Q 048764 96 NVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNE---FNVVPRL-RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 96 g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---~gi~P~~-~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|-.+ -..+|+.+-..|...|++++|+..|++.... .+..+.. .+|..+...+...|+.++|..
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2111 1467888999999999999999999988721 2221221 256666677778899999887
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.31 Score=40.47 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-H
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-E 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~ 101 (295)
.+..+-..|.+.|++++|+..|++..+..- .|. ...+..+-..+...........|.+++|...|++..+.. |+ .
T Consensus 54 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~ 131 (261)
T 3qky_A 54 AQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHE 131 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCch
Confidence 677777889999999999999999887531 222 233333333333311111122345999999999998743 32 2
Q ss_pred HHH-----------------HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc----ccHHHHHHHHHhc----------
Q 048764 102 ALV-----------------TSVARLAASKKDSDYAFELIKRMNNEFNVVPRL----RTYDPALFCFCEN---------- 150 (295)
Q Consensus 102 ~ty-----------------~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~ll~~~~~~---------- 150 (295)
..+ -.+-..|...|++++|...|+... ... |+. ..+..+..+|...
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF-DAY--PDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHC--CCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 233 445778889999999999999988 432 542 3566666777766
Q ss_pred CCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 151 LEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 151 g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
|+.++|. ..|..++..+-......+|..++..+.
T Consensus 209 ~~~~~A~--~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 209 ERYRRAV--ELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHH--HHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred chHHHHH--HHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 4445443 235555555555555566666665543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.082 Score=47.39 Aligned_cols=119 Identities=14% Similarity=0.017 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL---------------NFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~---------------g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
.|..+=..+.+.|++++|+..|++..+. --+.+..+|..+-..+...+. +++|...|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~A~~~~ 296 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------WQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------HHHHHHHH
Confidence 5777778899999999999999988751 112234455555554444442 99999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHH
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQK 155 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~ 155 (295)
++..+.. +-+...|..+-.+|...|++++|+..|++.. .. .|+. ..+..+-..+...++.++
T Consensus 297 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al-~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 297 LEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQ-EI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9988743 2467888889999999999999999999887 44 3543 334444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.083 Score=49.43 Aligned_cols=106 Identities=8% Similarity=-0.026 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHh--CC-CCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCC-CCC-cccHHHHHHHHH
Q 048764 82 LRHGFRVFDQMLS--NN-VIP----NEALVTSVARLAASKKDSDYAFELIKRMNN----EFNV-VPR-LRTYDPALFCFC 148 (295)
Q Consensus 82 ~~~a~~lf~~M~~--~g-~~p----d~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi-~P~-~~ty~~ll~~~~ 148 (295)
+++|..++++.++ .. ..| -..+++.|..+|...|++++|..++++... ..|- -|+ ..+|+.|-..|.
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 404 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999988765 22 222 256799999999999999999999998653 2231 122 345777777888
Q ss_pred hcCCHHHhhc----------------HHH----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 149 ENLEAQKAYE----------------EQE----ITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 149 ~~g~~~~A~~----------------e~~----y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..|+.++|.. .|. .+.|-.++...+.+.+|+.++.++++
T Consensus 405 ~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 405 HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777 111 34444455556667777777777655
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.64 Score=37.51 Aligned_cols=143 Identities=13% Similarity=-0.001 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---
Q 048764 40 ATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK--- 115 (295)
Q Consensus 40 ~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g--- 115 (295)
.+|+..|.+..+.| +...+..|=.++ ..++ +++|...|+...+.| +...+..|-..|.. +
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~---------~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGD---------YQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTS
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCC
Confidence 45778888888776 445555555544 3444 999999999998875 56777777777777 6
Q ss_pred -CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc---------H----HH-HHHHHHHHHh----c
Q 048764 116 -DSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE---------E----QE-ITALLKVSAG----T 172 (295)
Q Consensus 116 -~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~---------e----~~-y~~ll~~~~~----~ 172 (295)
++++|+.+|+.-. ..| +...+..|-..|.. .++.++|+. . +. +..|=..|.. .
T Consensus 67 ~~~~~A~~~~~~A~-~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 67 ADYPQARQLAEKAV-EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp CCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred CCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC
Confidence 8999999999988 655 44466666666766 788888888 2 22 5555555666 7
Q ss_pred CCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
++.++|+.++++-.+. ..++..+..|-..|
T Consensus 143 ~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL--SRTGYAEYWAGMMF 172 (212)
T ss_dssp CCHHHHHHHHHHHHHT--SCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 7899999999998775 22333444444444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.37 Score=43.51 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCC-CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL-----N-FRL-SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~-----g-~~p-d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
+|+.+-..|...|++++|+..|++..+- + ..+ ...+|+.+-. +...+.. .+++|...|++..+..
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN-------QNERAKVCFEKALEKK 168 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTT-------HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccc-------cHHHHHHHHHHHHHhC
Confidence 8999999999999999999999987632 1 112 2334443322 2222221 3899999999987733
Q ss_pred CCCC-HHHHHHHHHH---HHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcC----CHHHhhc---------
Q 048764 97 VIPN-EALVTSVARL---AASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENL----EAQKAYE--------- 158 (295)
Q Consensus 97 ~~pd-~~ty~~li~~---~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g----~~~~A~~--------- 158 (295)
|+ ...+..+..+ +...++.++|++.|++.. .. .|+ ...+..+...+...+ +.++|..
T Consensus 169 --p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al-~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~ 243 (472)
T 4g1t_A 169 --PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI-RL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243 (472)
T ss_dssp --TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH-HH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-hc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 44 4445444444 445688889999998877 44 344 445555555555544 4444444
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 159 ---EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 159 ---e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
...+..+-..+...|++++|...+.+..+. .|+.
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 280 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNN 280 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCh
Confidence 223677888899999999999999998763 4543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0093 Score=43.60 Aligned_cols=85 Identities=9% Similarity=0.020 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 80 SALRHGFRVFDQMLSNN--VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g--~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
|.+++|...|++..+.+ -+-+..+|..+-..|...|++++|...|++.. .. .|+... +
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~------~----------- 63 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQ--FPNHQA------L----------- 63 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHH------H-----------
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCchH------H-----------
Confidence 34788999999988854 23346778889999999999999999999988 54 355311 0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 158 EEQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 158 ~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
|..+-.++...|++++|...+.+....
T Consensus 64 ----~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 64 ----RVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555677778888888888876653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.15 Score=39.14 Aligned_cols=102 Identities=19% Similarity=0.102 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC----------CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL-------NF----------RLSLHHFNALLYLCSNSATDPSLKDSALRHGFR 87 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~-------g~----------~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~ 87 (295)
.|...=..+.+.|++++|+..|.+..+. .- +.+...|..+-..+...+. +++|..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------~~~A~~ 84 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--------LHEAEE 84 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------HHHHHH
Confidence 6777788899999999999999988764 00 1122344444443333332 888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 88 VFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 88 lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
.|+...+.. +.+...|..+-.+|...|++++|...|+... .. .|+..
T Consensus 85 ~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al-~l--~p~~~ 131 (162)
T 3rkv_A 85 TSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL-RN--HPAAA 131 (162)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CGGGH
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH-hc--CCCCH
Confidence 888887743 3457788888888888999999988888876 43 46544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.24 Score=44.71 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCC-------
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLE------- 152 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~------- 152 (295)
..++|.++|++..... +.+..++..+-..|...|++++|...|++.. .. .|+. .+|..+-..|...+.
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL-EY--IPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH-Hh--CCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4667888888776533 3567788889999999999999999999887 43 3553 344444444432211
Q ss_pred ------------HHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 ------------AQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 ------------~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.+.|.. ...|..+-..+...|++++|...|++....
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 122222 011667778889999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.19 Score=42.84 Aligned_cols=77 Identities=12% Similarity=-0.004 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A 156 (295)
..|.+++|...|++..+.. +-+...|..+-..|.+.|++++|...++... .. .| +...|..+-.+|...|+.++|
T Consensus 16 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL-EL--DGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4567899999999887742 2367888889999999999999999999877 43 34 455677778888889999888
Q ss_pred hc
Q 048764 157 YE 158 (295)
Q Consensus 157 ~~ 158 (295)
..
T Consensus 92 ~~ 93 (281)
T 2c2l_A 92 IA 93 (281)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.11 Score=38.16 Aligned_cols=77 Identities=10% Similarity=-0.085 Sum_probs=41.1
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVE 176 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~ 176 (295)
..+.+.|++++|...|+... ... .-+...|..+-.++...|+.++|.. ...+..+-.++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVC-QKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34444555555555555544 221 1123334444444444555554444 111555666677888888
Q ss_pred HHHHHHHHHHH
Q 048764 177 KVYQYLQKLRS 187 (295)
Q Consensus 177 ~a~~ll~~m~~ 187 (295)
+|...+++..+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 88888887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.61 Score=37.87 Aligned_cols=121 Identities=9% Similarity=0.034 Sum_probs=81.4
Q ss_pred hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 60 HFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
.|+.-..+...++ +++|...|+++.+... .|. ...+..+..+|.+.|++++|+..|+... .. .|+.
T Consensus 7 ~~~~a~~~~~~g~---------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~--~P~~ 74 (225)
T 2yhc_A 7 IYATAQQKLQDGN---------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RL--NPTH 74 (225)
T ss_dssp HHHHHHHHHHHTC---------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTC
T ss_pred HHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH--CcCC
Confidence 3444444666666 9999999999987432 122 4578888899999999999999999988 43 3543
Q ss_pred c----cHHHHHHHHHh------------------cCCHHHhhc--------HHH----H-----------------HHHH
Q 048764 138 R----TYDPALFCFCE------------------NLEAQKAYE--------EQE----I-----------------TALL 166 (295)
Q Consensus 138 ~----ty~~ll~~~~~------------------~g~~~~A~~--------e~~----y-----------------~~ll 166 (295)
. .+-.+-.++.. .|+.++|.. .|. + -.+-
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23222333332 567777766 010 1 2334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 167 KVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
..+.+.|++++|...++++.+. .|+.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~--~p~~ 180 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRD--YPDT 180 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTS
T ss_pred HHHHHcCcHHHHHHHHHHHHHH--CcCC
Confidence 4578899999999999998874 4543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.25 Score=39.82 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH-cCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCS-NSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSV 107 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~-~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~l 107 (295)
+-..|.+.|++++|+..|++..+.. +-+...|..+-.++. .+. +++|...|++..+.. +-+..+|..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~-P~~~~a~~~l 128 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQ---------EKDALRMYEKILQLE-ADNLAANIFL 128 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 7778899999999999999988763 345667777766444 455 999999999998743 2357788888
Q ss_pred HHHHHcCCCH--HHHHHHHHHhhhhcCCCCCccc--HHHHHHHHHhcCCHHHhhc
Q 048764 108 ARLAASKKDS--DYAFELIKRMNNEFNVVPRLRT--YDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 108 i~~~~~~g~~--~~A~~l~~~M~~~~gi~P~~~t--y~~ll~~~~~~g~~~~A~~ 158 (295)
-..|...|+. +.+...+.... .|+... +..+-.++...|+.++|..
T Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~ 178 (208)
T 3urz_A 129 GNYYYLTAEQEKKKLETDYKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARN 178 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHH
Confidence 8887665543 34455555444 344332 2223334455677777754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=94.95 E-value=2.1 Score=38.96 Aligned_cols=151 Identities=10% Similarity=0.030 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSK---DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g---~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
.+..+-..|.+.| +.++|+..|.+..+.| .++...+..|-.++..+.. .....++|...|+... .| +.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~----~~~d~~~A~~~~~~aa-~g---~~ 248 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATL----GTPDEKTAQALLEKIA-PG---YP 248 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGG----SSCCHHHHHHHHHHHG-GG---ST
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC----CCCCHHHHHHHHHHHc-CC---CH
Confidence 6666667777788 9999999999998887 4444544455555554410 0012899999999987 33 44
Q ss_pred HHHHHHHHH-H--HcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC-----CHHHhhc---------HHHHHH
Q 048764 102 ALVTSVARL-A--ASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENL-----EAQKAYE---------EQEITA 164 (295)
Q Consensus 102 ~ty~~li~~-~--~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g-----~~~~A~~---------e~~y~~ 164 (295)
..+..|-.. | ...+++++|+.+|++-. ..| +...+..|-..|. .| +.++|+. ...+..
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~ 323 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYY 323 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555 3 45889999999999988 766 4445555555555 55 7888777 111233
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcc
Q 048764 165 LLKVSAG----TGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 165 ll~~~~~----~g~~~~a~~ll~~m~~~~ 189 (295)
|=..|.. ..+.++|...+.+-.+.|
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 3333333 348889999888877654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.063 Score=49.90 Aligned_cols=103 Identities=11% Similarity=0.027 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
..|.+++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++.. ... .-+...|..+-.+|...|+.++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445999999999987742 2358899999999999999999999999988 543 234567888888999999999998
Q ss_pred c--------HH----HHHHHHHH--HHhcCCHHHHHHHHH
Q 048764 158 E--------EQ----EITALLKV--SAGTGRVEKVYQYLQ 183 (295)
Q Consensus 158 ~--------e~----~y~~ll~~--~~~~g~~~~a~~ll~ 183 (295)
. .+ .+..+-.+ +.+.|++++|..+++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8 11 13333333 677788999988887
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.062 Score=37.90 Aligned_cols=89 Identities=8% Similarity=-0.009 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN---- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd---- 100 (295)
.|..+-..+.+.|++++|+..|++..+.. +.+...|..+-..+...+. +++|...|+...+.. |+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~--p~~~~~ 74 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGE--------YTQAIQMCQQGLRYT--STAEHV 74 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSC--SSTTSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC--CCccHH
Confidence 56666677777888888888888776542 3344555555554433332 777887777776532 33
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHH
Q 048764 101 ---EALVTSVARLAASKKDSDYAFELI 124 (295)
Q Consensus 101 ---~~ty~~li~~~~~~g~~~~A~~l~ 124 (295)
...+..+-.++...|+.+.|...|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 334444444444444444444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.6 Score=32.65 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHH
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEK 177 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~ 177 (295)
-+...|..+-..|...|++++|...|+... ... |+ ...|..+-.+|...|+.++|.. .|...|...-..++...
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--p~~~~a~~~lg~~~~~~g~~~~A~~--~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELV-ETD--PDYVGTYYHLGKLYERLDRTDDAID--TYAQGIEVAREEGTQKD 79 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--TTCTHHHHHHHHHHHHTTCHHHHHH--HHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC--CCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhhhcCCchhH
Confidence 357788899999999999999999999988 543 44 4456666666666666666643 12223333334444444
Q ss_pred HHHHHHHHH
Q 048764 178 VYQYLQKLR 186 (295)
Q Consensus 178 a~~ll~~m~ 186 (295)
+.++...+.
T Consensus 80 ~~~l~~~l~ 88 (100)
T 3ma5_A 80 LSELQDAKL 88 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444433333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.3 Score=47.60 Aligned_cols=88 Identities=8% Similarity=0.053 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
++.|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+. . |..+...|...|+.+....
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~-d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH-D---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-C---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-C---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 77777775543 577999999999999999999999999987 2 4455555555555554333
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 ----EQEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 ----e~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...|+.-..+|.+.|++++|.+++.++
T Consensus 732 ~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 732 DAETTGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 222444444555555666555555553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.15 Score=35.79 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=51.0
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
+...+..+-..+...+. +++|...|++..+.. +.+...|..+-..|...|++++|...|+... . +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL--------YREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-R--YTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T--SCSS
T ss_pred hHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H--hCCC
Confidence 34455555554444332 999999999987743 3467889999999999999999999999987 4 3466
Q ss_pred c
Q 048764 137 L 137 (295)
Q Consensus 137 ~ 137 (295)
.
T Consensus 71 ~ 71 (111)
T 2l6j_A 71 A 71 (111)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.19 Score=49.02 Aligned_cols=123 Identities=7% Similarity=0.058 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL-N-FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~-g-~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|...+....+.++++.|..+|..+.+. + ..+.++...+.|.....++ .+.|++||+...+. .+-+..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d---------~e~Ar~ife~~Lk~-~p~~~~ 505 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD---------TKTACKVLELGLKY-FATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC---------CHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHH-CCCchH
Confidence 7888888888899999999999999876 3 3445555555555333333 78999999998775 445677
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC--CcccHHHHHHHHHhcCCHHHhhc
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVP--RLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P--~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|...++.....|+.+.|..+|+... ...-.| ....|...+.--.+.|+.+.+..
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal-~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSI-DKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHT-TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 78889998888999999999999987 443211 23467777777778898877655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.42 Score=43.88 Aligned_cols=116 Identities=6% Similarity=-0.105 Sum_probs=79.7
Q ss_pred HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC-CC-------------HHHHHHHHHHHHcCCCHHHHHHH
Q 048764 59 HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVI-PN-------------EALVTSVARLAASKKDSDYAFEL 123 (295)
Q Consensus 59 ~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~-pd-------------~~ty~~li~~~~~~g~~~~A~~l 123 (295)
..|..+-. ++..+. +++|...|++..+..-. ++ ..+|+.+-.+|.+.|++++|+..
T Consensus 269 ~~~~~~G~~~~~~g~---------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGK---------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34445545 444555 99999999998773211 11 58899999999999999999999
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHHhcCCHHHHH-HHHHHH
Q 048764 124 IKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSAGTGRVEKVY-QYLQKL 185 (295)
Q Consensus 124 ~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~~~g~~~~a~-~ll~~m 185 (295)
|+... ... ..+...|..+-.+|...|+.++|.. .| .|..+-.++.+.++.+++. .++..|
T Consensus 340 ~~~al-~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 340 CDKAL-GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 543 2345667777788888888888877 11 2555556666666666554 333443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.46 Score=37.98 Aligned_cols=91 Identities=8% Similarity=0.104 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
++|.++.|.++-+++ -+...|..|-+..-..|+++.|.+.|.... -|..|+--|.-.|+.++-.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHTCHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhCCHHHHH
Confidence 344599999998887 478999999999999999999999999988 4667777777788877654
Q ss_pred c-------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 158 E-------EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 158 ~-------e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
. ...|+.-...+.-.|+++++.++|.+
T Consensus 81 kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 23377777777788888888888765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.16 E-value=1.1 Score=32.15 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 82 LRHGFRVFDQMLSNNVIPNE---ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+++|...|+...+... .+. ..+..+-..+...|++++|...|+... ... |+...... +
T Consensus 18 ~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~-~~~--p~~~~~~~---~------------ 78 (129)
T 2xev_A 18 YDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLV-SRY--PTHDKAAG---G------------ 78 (129)
T ss_dssp HHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTSTTHHH---H------------
T ss_pred HHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHC--CCCcccHH---H------------
Confidence 9999999999877432 122 477778888999999999999999987 543 54321100 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
+..+-.++...|+.++|...|++.... .|+..
T Consensus 79 ---~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 79 ---LLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 334455577788888888888887764 35543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=94.16 E-value=1 Score=31.91 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhh
Q 048764 84 HGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~ 157 (295)
.|...|++..+.. +.+...|..+-..|...|++++|...|+... ... |+ ...|..+-..|...|+.++|.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFD--PTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHC--CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4667777776643 3467889999999999999999999999988 543 43 344555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.33 Score=35.94 Aligned_cols=86 Identities=13% Similarity=-0.097 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCC----cccHHHHHHHHHhcCCHHHhhc------------------
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPR----LRTYDPALFCFCENLEAQKAYE------------------ 158 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~----~~ty~~ll~~~~~~g~~~~A~~------------------ 158 (295)
.++..+-..|...|++++|...+++.. ...- .++ ..++..+-..|...|+.++|..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345556666666777777777776654 2110 011 1355566666666777776666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...+..+-..+...|++++|...+.+....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 011555666777889999999888886553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.45 Score=33.91 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 048764 41 TAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYA 120 (295)
Q Consensus 41 ~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A 120 (295)
.|+..|++..+.. +-+...+..+-..+...+. +++|...|+...+.. +.+...|..+-..|...|++++|
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQ--------FDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 4677788777643 3456666666665544442 999999999988743 24577899999999999999999
Q ss_pred HHHHHHhh
Q 048764 121 FELIKRMN 128 (295)
Q Consensus 121 ~~l~~~M~ 128 (295)
...|+...
T Consensus 73 ~~~~~~al 80 (115)
T 2kat_A 73 RQAWESGL 80 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.78 Score=30.54 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFC 148 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~ 148 (295)
+++|...|++..+.. +.+..+|..+-..+...|++++|...|++.. ... |+ ...+..+-..+.
T Consensus 25 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~--p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 25 YDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD--PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC--CCCHHHHHHHHHHHH
Confidence 999999999887643 3467788899999999999999999999987 543 43 334444444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=93.29 E-value=1.2 Score=41.48 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|...+....+.++++.|..+|+.+...+..+.+....+.|.....++ .+.|+.+|+...+.- +-+...|
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d---------~~~ar~ife~al~~~-~~~~~~~ 357 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGS---------RATPYNIFSSGLLKH-PDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC---------SHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHHHC-CCCHHHH
Confidence 677777777777788888888888722221112222223333333334 678888888776632 1223445
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
...|+-..+.|+.+.|..+|+... . . ..-|...++.=...|+.+.+..++++
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~-k-----~----------------------~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE-K-----T----------------------SRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC-C-----B----------------------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-H-----H----------------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666776677788888888888863 1 0 11155566655667899989888888
Q ss_pred HHH
Q 048764 185 LRS 187 (295)
Q Consensus 185 m~~ 187 (295)
...
T Consensus 410 ~~~ 412 (493)
T 2uy1_A 410 KMD 412 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=93.25 E-value=1.2 Score=29.61 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +.+...+..+-..+...+. +++|...|++..+.. +-+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-p~~~~~~ 80 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELD-PNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 77778888999999999999999988653 3355666666665544442 999999999987743 2345666
Q ss_pred HHHHHHHHc
Q 048764 105 TSVARLAAS 113 (295)
Q Consensus 105 ~~li~~~~~ 113 (295)
..+-..+..
T Consensus 81 ~~l~~~~~~ 89 (91)
T 1na3_A 81 QNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 665555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=93.16 E-value=2 Score=32.05 Aligned_cols=112 Identities=17% Similarity=0.079 Sum_probs=76.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS-- 113 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~-- 113 (295)
..++++|+..|.+..+.| .|+.. |=.++..+.. +++|.+.|+.-.+.| +...+..|-..|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~--------~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQIN--------KQKLFQYLSKACELN---SGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSC--------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCC--------HHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCC
Confidence 356889999999999888 33333 3335555553 778999999988765 56777777777777
Q ss_pred --CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 048764 114 --KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAG----TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 114 --~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~----~g~~~~a~~ll~~m~~ 187 (295)
.+++++|+.+|+.-. ..|. ...+.. |=..|.. .++.++|...+++-.+
T Consensus 72 g~~~d~~~A~~~~~~Aa-~~g~---~~a~~~----------------------Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKAC-GLND---QDGCLI----------------------LGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSCCCHHHHHHHHHHHH-HTTC---HHHHHH----------------------HHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHH-cCCC---HHHHHH----------------------HHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 789999999999987 6552 222222 2222333 5677777777777666
Q ss_pred cc
Q 048764 188 TV 189 (295)
Q Consensus 188 ~~ 189 (295)
.|
T Consensus 126 ~g 127 (138)
T 1klx_A 126 LG 127 (138)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.47 Score=36.14 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhc-------CC---------CC-CcccHHHHHHHHHhcCCHHHhhc--------
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEF-------NV---------VP-RLRTYDPALFCFCENLEAQKAYE-------- 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~-------gi---------~P-~~~ty~~ll~~~~~~g~~~~A~~-------- 158 (295)
+...-..+.+.|++++|+..|.... .. .- .| +...|..+-.+|.+.|+.++|..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555666666666665544 22 00 01 12345555555666666666655
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 ----EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 ----e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...|..+-.++...|++++|...|.+....
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 112556666778888888888888887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.64 Score=40.72 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------------------hHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLH------------------HFNALLYLCSNSATDPSLKDSALRHGF 86 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~------------------ty~~ll~~~~~~~~~~~~~~~~~~~a~ 86 (295)
.|..+-..+.+.|++++|+..|.+..+. .|+.. .|..+-..+...+. +++|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~--------~~~A~ 250 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR--------YDEAI 250 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC--------CHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHH
Confidence 6777778888999999999999997754 24332 33333333333332 66666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 87 RVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 87 ~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..|+..++.. +-+...|..+-.+|...|++++|...|+...
T Consensus 251 ~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 251 GHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666665532 2345666666666777777777777766655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=92.69 E-value=0.78 Score=40.90 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHH
Q 048764 82 LRHGFRVFDQMLSN---------------NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALF 145 (295)
Q Consensus 82 ~~~a~~lf~~M~~~---------------g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~ 145 (295)
+++|...|++..+. --+-+..+|+.+-..|.+.|++++|+..+++.. .. .|+ ...|..+-.
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~~--~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL-EI--DPSNTKALYRRAQ 315 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TT--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-Hh--CchhHHHHHHHHH
Confidence 88888888877651 112245788889999999999999999999988 43 454 334444444
Q ss_pred HHHhcCCHHHh
Q 048764 146 CFCENLEAQKA 156 (295)
Q Consensus 146 ~~~~~g~~~~A 156 (295)
+|...|+.++|
T Consensus 316 ~~~~~g~~~eA 326 (370)
T 1ihg_A 316 GWQGLKEYDQA 326 (370)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHccCHHHH
Confidence 44444444444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=1.1 Score=40.96 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--C-CCCC----HHhHHHHHHHHH-cCCCCCCcchHHHHHHHHHHHHHHh----
Q 048764 27 LISLQSCTKSKDLATAISLYESALSL--N-FRLS----LHHFNALLYLCS-NSATDPSLKDSALRHGFRVFDQMLS---- 94 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~--g-~~pd----~~ty~~ll~~~~-~~~~~~~~~~~~~~~a~~lf~~M~~---- 94 (295)
...|..+.+.|++++|+.++++..+. . +.|+ ..+++.|..+|. .++ +++|..++++.+.
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~---------~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL---------LEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHHHHhHHH
Confidence 34466777889999999999988743 2 2232 356777777555 444 9999999887754
Q ss_pred -CCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 95 -NNV-IPN-EALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 95 -~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.|- -|+ ..+|+.|-..|...|++++|..++++..
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 221 233 5679999999999999999999998765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.62 Score=42.72 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHhc--C-CCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh-----CCC-CCC-H
Q 048764 36 SKDLATAISLYESALSL--N-FRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS-----NNV-IPN-E 101 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~--g-~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~-----~g~-~pd-~ 101 (295)
.|++++|+.++++..+. . +-|+ ..+++.|..+|...+. +++|..++++.++ .|- .|+ .
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------WEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 57899999999987632 2 2232 3677788886655442 9999999888755 232 244 5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+|+.|-..|...|++++|..++++-.
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 569999999999999999999998764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.66 Score=43.27 Aligned_cols=103 Identities=7% Similarity=-0.076 Sum_probs=71.6
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSL-----N-FRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-----g-~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
...|+. +++.|-..|...|++++|..++++..+- | --| -..+|+.|-.+|...+. +++|..+|
T Consensus 345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~--------~~eA~~~~ 416 (490)
T 3n71_A 345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH--------IEVGHGMI 416 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHH
Confidence 345554 9999999999999999999999987532 2 122 23566667665554442 88888877
Q ss_pred HHHHh-----CCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 048764 90 DQMLS-----NNV-IPN-EALVTSVARLAASKKDSDYAFELIKRMNN 129 (295)
Q Consensus 90 ~~M~~-----~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 129 (295)
++-.+ .|- -|+ ..+.+.|-.++...+.+++|..+|..|++
T Consensus 417 ~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 417 CKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76543 232 133 33455666677788899999999999984
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=91.89 E-value=5.8 Score=34.33 Aligned_cols=139 Identities=16% Similarity=0.101 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 37 KDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALR--HGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~--~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
+++++++.+++.+.+.. +-|-+.|+---.+....+. ++ ++++.++.|.+.+. -|-..|+.--..+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~--------~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDL--------HNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSK 193 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 78999999999998753 4456666655554444442 44 89999999988654 6888998877777777
Q ss_pred CC------HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------H-------HHHHHHHHHHHhc
Q 048764 115 KD------SDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------E-------QEITALLKVSAGT 172 (295)
Q Consensus 115 g~------~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------e-------~~y~~ll~~~~~~ 172 (295)
+. ++++++.++.+. ... .-|...|+-+-..+.+.|....+.. . ..+..+.+.+.+.
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI-~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKI-VKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHH-HHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred cccchhhhHHHHHHHHHHHH-HhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 76 899999999988 554 3455567777667777776433222 1 1266778888899
Q ss_pred CCHHHHHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRS 187 (295)
Q Consensus 173 g~~~~a~~ll~~m~~ 187 (295)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.45 Score=41.73 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEA------------------LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPA 143 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~------------------ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~l 143 (295)
+++|...|++.... .|+.. +|+.+-..|.+.|++++|+..|+... ... ..+...|..+
T Consensus 195 ~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~l 270 (338)
T 2if4_A 195 LEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL-TEE-EKNPKALFRR 270 (338)
T ss_dssp CHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHH
Confidence 88999999887652 25443 78889999999999999999999987 543 2245566666
Q ss_pred HHHHHhcCCHHHhhc
Q 048764 144 LFCFCENLEAQKAYE 158 (295)
Q Consensus 144 l~~~~~~g~~~~A~~ 158 (295)
-.+|...|+.++|..
T Consensus 271 g~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 271 GKAKAELGQMDSARD 285 (338)
T ss_dssp HHHHHTTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 667777777766665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=1.4 Score=40.34 Aligned_cols=74 Identities=12% Similarity=-0.042 Sum_probs=58.4
Q ss_pred cCCCHHHHHHHHHHhhh--hcCCCCC----cccHHHHHHHHHhcCCHHHhhc--------------------HHHHHHHH
Q 048764 113 SKKDSDYAFELIKRMNN--EFNVVPR----LRTYDPALFCFCENLEAQKAYE--------------------EQEITALL 166 (295)
Q Consensus 113 ~~g~~~~A~~l~~~M~~--~~gi~P~----~~ty~~ll~~~~~~g~~~~A~~--------------------e~~y~~ll 166 (295)
..|++++|..++++... ..-+-|+ ..+|+.|..+|...|++++|.. ...|+.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46789999999987652 1223344 3679999999999999999988 22388888
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048764 167 KVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~ 186 (295)
..|...|++++|..++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999998853
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=91.54 E-value=1.6 Score=39.17 Aligned_cols=147 Identities=16% Similarity=0.035 Sum_probs=88.2
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCC-HHhHHH--HHHH--HHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTK-----SKDLATAISLYESALSLNFRLS-LHHFNA--LLYL--CSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 25 t~~~li~~~~~-----~g~~~~A~~lf~~m~~~g~~pd-~~ty~~--ll~~--~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
.|...+.+... ..++.+|+.+|++..+. .|+ ...|.. +-+. ...+... .........-+.....
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~----~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLD----EKQLAALNTEIDNIVT 269 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCc----hhhHHHHHHHHHHHHh
Confidence 77776655443 23458899999999865 343 233332 2221 1111110 0112222222222222
Q ss_pred -CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcC
Q 048764 95 -NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTG 173 (295)
Q Consensus 95 -~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g 173 (295)
...+.+..+|.++-..+...|++++|...++... ..+ |+...| ..+=..+.-.|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl-~Ln--~s~~a~----------------------~llG~~~~~~G 324 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI-DLE--MSWLNY----------------------VLLGKVYEMKG 324 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC--CCHHHH----------------------HHHHHHHHHTT
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcC--CCHHHH----------------------HHHHHHHHHCC
Confidence 2336788899998888888899999999999999 665 664332 22333456778
Q ss_pred CHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 174 RVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 174 ~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
+.++|.+.+.+-.+ ..|+..|+.....++
T Consensus 325 ~~~eA~e~~~~Alr--L~P~~~t~~~~~~l~ 353 (372)
T 3ly7_A 325 MNREAADAYLTAFN--LRPGANTLYWIENGI 353 (372)
T ss_dssp CHHHHHHHHHHHHH--HSCSHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHh--cCCCcChHHHHhCce
Confidence 88888888877555 378888877665544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=1.7 Score=39.61 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=62.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhh--cCCCCC----cccHHHHHHHHHhcCCHHHhhc--------------------HH
Q 048764 107 VARLAASKKDSDYAFELIKRMNNE--FNVVPR----LRTYDPALFCFCENLEAQKAYE--------------------EQ 160 (295)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~--~gi~P~----~~ty~~ll~~~~~~g~~~~A~~--------------------e~ 160 (295)
.|.-+...|++++|..++++.... .-+.|+ ..+++.|...|...|++++|.. ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355566789999999999987621 122333 3578999999999999999988 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.|+.|-..|...|++++|..++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 37888888999999999999998853
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.23 E-value=3.5 Score=39.90 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=72.3
Q ss_pred CCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 56 LSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 56 pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
.+...|..|-.+|-..+. ++.|.+.|..+.. |..+...|...|+.+....+-+... ..|
T Consensus 679 ~~~~~W~~la~~al~~~~--------~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~-~~~--- 737 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFN--------FKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE-TTG--- 737 (814)
T ss_dssp CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH-HTT---
T ss_pred CcHhHHHHHHHHHHHcCC--------HHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH-HcC---
Confidence 456788888886655553 9999999998854 5567777777888887766666555 444
Q ss_pred CcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 136 RLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 136 ~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
-|+....+|.+.|++++| ++.|.+.+++++|..+-+.
T Consensus 738 ---~~~~A~~~~~~~g~~~~a---------~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 ---KFNLAFNAYWIAGDIQGA---------KDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp ---CHHHHHHHHHHHTCHHHH---------HHHHHHTTCHHHHHHHHHH
T ss_pred ---chHHHHHHHHHcCCHHHH---------HHHHHHcCChHHHHHHHHH
Confidence 457777778888888764 7778999999999998776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=91.08 E-value=4.5 Score=31.53 Aligned_cols=109 Identities=12% Similarity=0.011 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-----CHH-----hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFR-L-----SLH-----HFNALLYLCSNSATDPSLKDSALRHGFRVFDQML 93 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~-p-----d~~-----ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~ 93 (295)
.+...=..+.+.|++++|+..|++..+..-. | +.. .|+.+-.++...+. +++|+..|+.-+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~~~~kAL 84 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHHHHHHHH
Confidence 5555666788899999999999988754311 1 222 66666664444442 888888888877
Q ss_pred hC-----CCCCC-HHHH----HHHHHHHHcCCCHHHHHHHHHHhhh----hcCCCCCcccHH
Q 048764 94 SN-----NVIPN-EALV----TSVARLAASKKDSDYAFELIKRMNN----EFNVVPRLRTYD 141 (295)
Q Consensus 94 ~~-----g~~pd-~~ty----~~li~~~~~~g~~~~A~~l~~~M~~----~~gi~P~~~ty~ 141 (295)
+. -+.|| ...| ...-.++...|++++|+..|+.-.. ..|+.+.....-
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 63 12565 4567 8888899999999999999998752 456666544433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=90.95 E-value=0.88 Score=31.73 Aligned_cols=82 Identities=9% Similarity=-0.005 Sum_probs=55.4
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc-CCCC
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF-NVVP 135 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~-gi~P 135 (295)
+...+..+-..+...+. +++|...|+...+... -+...|..+-.+|...|++++|.+.|++.. .. .-.+
T Consensus 6 ~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~~~~~ 75 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN--------ASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI-EVAREEG 75 (100)
T ss_dssp CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHS
T ss_pred CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhhhcCC
Confidence 44555555554444442 9999999999987542 346789999999999999999999999876 32 1124
Q ss_pred CcccHHHHHHHHH
Q 048764 136 RLRTYDPALFCFC 148 (295)
Q Consensus 136 ~~~ty~~ll~~~~ 148 (295)
+.....-+...+.
T Consensus 76 ~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 76 TQKDLSELQDAKL 88 (100)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=89.83 E-value=3.3 Score=32.32 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCCC-C-----CHH-----HHHHHHHHHHcCCCHHHHHHHHHHhhhhc-----CCCCCcccHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVI-P-----NEA-----LVTSVARLAASKKDSDYAFELIKRMNNEF-----NVVPRLRTYDPALF 145 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~-p-----d~~-----ty~~li~~~~~~g~~~~A~~l~~~M~~~~-----gi~P~~~ty~~ll~ 145 (295)
+++|...|+.-.+.... | +.. .|+.+-.++.+.|++++|+..|+.-. .. .+.|+ ...++|.
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL-~l~n~~~e~~pd--~~~A~~~ 103 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQD--EGKLWIS 103 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTST--HHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhhhccccCCCc--hHHHHHH
Confidence 99999999988763211 1 333 89999999999999999999999887 43 22454 2233333
Q ss_pred HHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 146 CFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 146 ~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
++ ...=.++...|++++|+..|++-.+
T Consensus 104 ~~---------------~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 104 AV---------------YSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HH---------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH---------------HhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 32 3344457788888888888888654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=89.20 E-value=12 Score=33.73 Aligned_cols=141 Identities=12% Similarity=0.030 Sum_probs=88.9
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH----HHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 27 LISLQSCTKS----KDLATAISLYESALSLNFRLSLHHFNALLYL----CSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 27 ~~li~~~~~~----g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~----~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
..+-..|... ++.++|+..|++.. .|.+ ..+..|-.+ ...++ .++|...|+.-.+.|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~---~a~~~Lg~~~~~~~~~~d---------~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-PGYP---ASWVSLAQLLYDFPELGD---------VEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGST---HHHHHHHHHHHHSGGGCC---------HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCH---HHHHHHHHHHHhCCCCCC---------HHHHHHHHHHHHHCC--
Confidence 4455555444 68999999999887 5433 333333332 23333 899999999988876
Q ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc----------H
Q 048764 99 PNEALVTSVARLAASKK-----DSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE----------E 159 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g-----~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~----------e 159 (295)
+...+..|-..|. .| ++++|+..|..-. .-+...+..|-..|.. ..+.++|+. .
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 5666777766666 44 8999999998754 3344455555555554 237777777 1
Q ss_pred HHHHHHHHHHH----hcCCHHHHHHHHHHHHHcc
Q 048764 160 QEITALLKVSA----GTGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 160 ~~y~~ll~~~~----~~g~~~~a~~ll~~m~~~~ 189 (295)
..+..|-..|. ...+.++|...+..-.+.|
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 11233333333 2457888888888877655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=87.95 E-value=6.6 Score=29.06 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 80 SALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
...++|.+.|+.-.+.|. |+.. |-..|...+.+++|+++|+.-. ..| +...+..|-..|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa-~~g---~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHH-cCC---CHHHHHHHHHHHHc
Confidence 458899999999988873 4443 5566666778889999999988 655 33344444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=87.92 E-value=2.4 Score=28.82 Aligned_cols=55 Identities=7% Similarity=0.113 Sum_probs=32.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHH-hHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLH-HFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~-ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
..+.+.|++++|+..|++..+.. +-+.. .|..+-..+ ..+. +++|...|+...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~---------~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGD---------WQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhc
Confidence 34566777777777777776542 22333 444444433 3333 77777777776653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.65 E-value=2.1 Score=36.78 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC--HHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLS--LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN--EALVT 105 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd--~~ty~ 105 (295)
-..|.+.+++++|+..|+...... .|. ...+..|=.++...+. +++|+..|++.......|. .....
T Consensus 142 a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~--------~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 142 AVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL--------FTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp HHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHhcCCCCccccHHHHH
Confidence 347889999999999998554322 111 1133333336666664 9999999999875443254 33556
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
..-.++.+.|+.++|..+|+++. .. .|+
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~-a~--~P~ 240 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQ-TT--HPE 240 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH-HH--SCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hc--CCc
Confidence 66677788999999999999998 54 465
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.38 E-value=2.5 Score=32.78 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCC
Q 048764 39 LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP--NEALVTSVARLAASKKD 116 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p--d~~ty~~li~~~~~~g~ 116 (295)
+..+.+-|.+....|.......|+--+.++.... ...++++..+|++..+.. .| +...+=.|--+|.+.|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~------~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY------NDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 4455555665555554333334443333433221 113667777777776654 23 22333334445577777
Q ss_pred HHHHHHHHHHhh
Q 048764 117 SDYAFELIKRMN 128 (295)
Q Consensus 117 ~~~A~~l~~~M~ 128 (295)
+++|.++|+...
T Consensus 87 Y~~A~~y~~~lL 98 (152)
T 1pc2_A 87 YEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777766
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.64 E-value=1.2 Score=34.84 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=72.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc-CCCCC-CcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 34 TKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSN-SATDP-SLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~-~~~~~-~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
.+.+.+++|+..|+...+.. +-+...|+.+=.++.. +.... ...-+.+++|+..|++..+-.- -+..+|..+=.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 34566889999999887664 4466666655553322 22000 0000126799999999877332 2567888898988
Q ss_pred HcC-----------CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 112 ASK-----------KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 112 ~~~-----------g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
... |++++|...|++.. . +.|+...|.-.|...-
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl-~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAV-D--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHH-H--HCTTCHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHH
Confidence 876 48999999999987 4 4688777766665443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.21 E-value=2.8 Score=30.13 Aligned_cols=63 Identities=10% Similarity=0.182 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
.=++++-++.+-...+.|+..+..+.+++|-+-.|+..|.++|+..+.+. .+....|..+|+-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 44677777888888899999999999999999999999999999988333 3444568777764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.65 E-value=12 Score=28.85 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCC
Q 048764 77 LKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK---DSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLE 152 (295)
Q Consensus 77 ~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g---~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~ 152 (295)
.....+..+.+-|.+....|. ++..+.-.+--+++++. +.+++..+|++.. ... .|+ .+-+.
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-~~~-~p~~~rd~l----------- 74 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-PKG-SKEEQRDYV----------- 74 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHS-CHHHHHHHH-----------
T ss_pred CCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcC-CccchHHHH-----------
Confidence 344568889999998877666 67777777777888888 6679999999988 544 342 11110
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 153 AQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 153 ~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
|+. =-++.+.|++++|.++++.+.+ .+|+..-...+...+
T Consensus 75 ---------Y~L-Av~~~kl~~Y~~A~~y~~~lL~--ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 75 ---------FYL-AVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERLI 114 (152)
T ss_dssp ---------HHH-HHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ---------HHH-HHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 222 2235799999999999999877 477766665555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=83.48 E-value=30 Score=32.51 Aligned_cols=175 Identities=11% Similarity=0.010 Sum_probs=106.5
Q ss_pred HHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCC--CCcchHHHHHHHHHHHHHHhCCCC
Q 048764 25 NFLISLQSC----TKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATD--PSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 25 t~~~li~~~----~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~--~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
.|..++..+ .....-++|+..++++.... +-+...|+.-=......+.+ .......++++.+.++.+.+.. +
T Consensus 27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-p 104 (567)
T 1dce_A 27 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-P 104 (567)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-C
Confidence 555543333 23344578899999998653 22223333221111111100 0001112789999999998754 3
Q ss_pred CCHHHHHHHHHHHHcCC--CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC-CHHHhhc------------HHHHH
Q 048764 99 PNEALVTSVARLAASKK--DSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENL-EAQKAYE------------EQEIT 163 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g--~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g-~~~~A~~------------e~~y~ 163 (295)
-+..+|+.---.+.+.| ++++++++++.|. ... .-|...|+----.+.+.| ..+++++ ...|+
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l-~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFL-EAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHH-hhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 57888998888888888 7799999999999 654 235555666555666777 6666666 22244
Q ss_pred HHHHHHHh--------------cCCHHHHHHHHHHHHHcccCC-ChhHHHHHHHHHh
Q 048764 164 ALLKVSAG--------------TGRVEKVYQYLQKLRSTVRCV-NEETGKIIEDWFS 205 (295)
Q Consensus 164 ~ll~~~~~--------------~g~~~~a~~ll~~m~~~~~~p-~~~t~~~l~~~~~ 205 (295)
..-..+.+ .+.++++.+++.+.... .| +.+.|......+.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHh
Confidence 33333333 25678999999887763 45 4567777666553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=81.20 E-value=9.2 Score=25.62 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 82 LRHGFRVFDQMLSNNVIPNEA-LVTSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~-ty~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
+++|...|++..+.. +.+.. .|..+-..|...|++++|...|+... ..
T Consensus 16 ~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 64 (99)
T 2kc7_A 16 IENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI-EL 64 (99)
T ss_dssp HHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hc
Confidence 899999999987743 23456 88888889999999999999999987 44
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=80.25 E-value=8.5 Score=35.55 Aligned_cols=144 Identities=8% Similarity=0.027 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcC-CCCCCcchHHHHHH-HHHHHHHHhC-----CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS-ATDPSLKDSALRHG-FRVFDQMLSN-----NV 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~-~~~~~~~~~~~~~a-~~lf~~M~~~-----g~ 97 (295)
.|-..+.-+.+.|+++.|..+|+..... |+...... .+... .. ++. ..+++..... +.
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~---------~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDE---------EAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTC---------THHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcch---------hHHHHHHHHHHHhhccchhhh
Confidence 6666777778899999999999999887 44332211 22211 10 111 1111111000 00
Q ss_pred CC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH-H
Q 048764 98 IP---NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE-I 162 (295)
Q Consensus 98 ~p---d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~-y 162 (295)
.+ ....|-..++.+-+.++++.|..+|+... ..++.+.+....+.+...+ .++.+.|.. .++ +
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHH
Confidence 11 13456666776666788999999999874 3222112111112233222 235666665 122 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...++.....|+.+.|..++.+.
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 55667677889999999999996
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.12 E-value=7.3 Score=34.84 Aligned_cols=108 Identities=10% Similarity=-0.044 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHH---cCCCHHHHHHHHHHhhhh-cC-CCCCcc------------------cHHHHHHHHHhcCCHHH
Q 048764 99 PNEALVTSVARLAA---SKKDSDYAFELIKRMNNE-FN-VVPRLR------------------TYDPALFCFCENLEAQK 155 (295)
Q Consensus 99 pd~~ty~~li~~~~---~~g~~~~A~~l~~~M~~~-~g-i~P~~~------------------ty~~ll~~~~~~g~~~~ 155 (295)
-|...|..++.... ..|+.+.|.+.+.+...- .| .-|+.. ....++..+...|+.++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 35556666665432 357888888877776521 12 112210 12234556667888888
Q ss_pred hhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cccCCChhHHHHHHHHHhc
Q 048764 156 AYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRS-----TVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 156 A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~-----~~~~p~~~t~~~l~~~~~~ 206 (295)
+.. |.-|..|+.++.+.|+..+|++.++++++ .|+.|++.+..+.......
T Consensus 190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~ 257 (388)
T 2ff4_A 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ 257 (388)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Confidence 775 55699999999999999999999998754 5999999999888777644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 295 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.25 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.03 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.73 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.21 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.94 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.92 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.56 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.36 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.14 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.02 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.01 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 95.91 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 95.56 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 95.48 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 95.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 95.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 94.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.95 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 94.92 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.76 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 94.46 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 94.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 94.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 93.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 92.8 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 92.65 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 92.12 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 91.79 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 91.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 86.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 84.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 84.23 | |
| d1ug3a1 | 193 | Eukaryotic initiation factor eIF4G {Human (Homo sa | 82.75 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 81.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 81.54 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.7e-05 Score=66.31 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+-..+...+++++|...+++..+.. +-+...|..+-..+...+. +++|...|+.....+. .+..++
T Consensus 171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~-~~~~~~ 240 (388)
T d1w3ba_ 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARI--------FDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC--------TTHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhcccc--------HHHHHHHHHHhHHHhh-hHHHHH
Confidence 66777778888888888888888876542 2345566666665555443 7788888888776432 456677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
..+...+.+.|++++|...|++.. .. .|+ ..+|..+...|...|+.++|.. ...+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAI-EL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 778888888888888888888876 43 344 4567777788888888888877 2236677777888
Q ss_pred cCCHHHHHHHHHHHHHcccCCCh-hHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWF 204 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~~~~~p~~-~t~~~l~~~~ 204 (295)
.|++++|...+++..+ ..|+. ..+..+-..+
T Consensus 318 ~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~ 349 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALE--VFPEFAAAHSNLASVL 349 (388)
T ss_dssp TTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 8888888888888655 34543 3444444444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=0.00016 Score=61.35 Aligned_cols=162 Identities=9% Similarity=0.017 Sum_probs=127.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|.+..... +.+...+..+-..+...+. +++|...|++..+.. +-+..+|
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGL--------IDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTC-SSCHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 78888899999999999999999988764 3445566666665544442 999999999987743 2357789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...+...|++++|.+.|+... ... ..+...+..+...+.+.|+.++|.. ...|..+-..+...
T Consensus 275 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 352 (388)
T d1w3ba_ 275 CNLANALKEKGSVAEAEDCYNTAL-RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhh-ccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999887 443 4566788888999999999999988 12267778889999
Q ss_pred CCHHHHHHHHHHHHHcccCCCh-hHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNE-ETGKII 200 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~-~t~~~l 200 (295)
|++++|...+++..+ ..|+. ..+..+
T Consensus 353 g~~~~A~~~~~~al~--l~P~~~~a~~~l 379 (388)
T d1w3ba_ 353 GKLQEALMHYKEAIR--ISPTFADAYSNM 379 (388)
T ss_dssp TCCHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 999999999998765 35653 344433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.16 E-value=7.9e-05 Score=63.12 Aligned_cols=152 Identities=9% Similarity=0.037 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|...+...-+.|+++.|..+|+.+.+.........|...+.++.+.+. ++.|+++|+...+.+... ...|
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~--------~~~ar~i~~~al~~~~~~-~~~~ 171 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDARTR-HHVY 171 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTSTTCC-THHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhCCCc-HHHH
Confidence 4555555666666666666666666543222223345555554443332 666666666665543322 2222
Q ss_pred HHHHH-HHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----------------HHHHHHHHH
Q 048764 105 TSVAR-LAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----------------EQEITALLK 167 (295)
Q Consensus 105 ~~li~-~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----------------e~~y~~ll~ 167 (295)
-.... -+...|+.+.|..+|+.+. ... .-+...|...++.+.+.|+.+.|.. ..-|...+.
T Consensus 172 ~~~a~~e~~~~~~~~~a~~i~e~~l-~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~ 249 (308)
T d2onda1 172 VTAALMEYYCSKDKSVAFKIFELGL-KKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHH-HHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH-Hhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 22222 2233456666666666665 321 2223345555666666666666554 112555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048764 168 VSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 168 ~~~~~g~~~~a~~ll~~m~~ 187 (295)
.-...|+.+.+..+.+++.+
T Consensus 250 fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 250 FESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555666666666665544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=0.00028 Score=59.52 Aligned_cols=142 Identities=11% Similarity=0.124 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 048764 38 DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDS 117 (295)
Q Consensus 38 ~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~ 117 (295)
..++|..+|+...+...+-+...|...+.+....+. .+.|..+|+.+.+........+|...+..+.+.|++
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~--------~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCh
Confidence 457888999998876555566677777775544442 999999999998754434466899999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHH-HHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 118 DYAFELIKRMNNEFNVVPRLRTYDPALF-CFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ty~~ll~-~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
+.|.++|+.+. ..+ ..+...|..... -+...|+.+.|.. ..-|...++.+...|+.++|+.+|++
T Consensus 151 ~~ar~i~~~al-~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ 228 (308)
T d2onda1 151 KSGRMIFKKAR-EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHH-TST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999988 544 222233333222 2344688888876 22388889999999999999999999
Q ss_pred HHHcc
Q 048764 185 LRSTV 189 (295)
Q Consensus 185 m~~~~ 189 (295)
-....
T Consensus 229 ai~~~ 233 (308)
T d2onda1 229 VLTSG 233 (308)
T ss_dssp HHHSS
T ss_pred HHHhC
Confidence 76654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=0.001 Score=55.53 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-C-------------C---------------
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-D-------------P--------------- 75 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~-------------~--------------- 75 (295)
.|..+-..|...|++++|+..|.+..+.. +-+...|..+...+...+. + +
T Consensus 55 a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (323)
T d1fcha_ 55 AWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 133 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhh
Confidence 77778888888888888888888877543 2244555555554433332 0 0
Q ss_pred ------------CcchHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHH
Q 048764 76 ------------SLKDSALRHGFRVFDQMLS-NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYD 141 (295)
Q Consensus 76 ------------~~~~~~~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~ 141 (295)
....+...+|...|....+ ..-.++..++..+-..+...|++++|...|++.. ... |+ ...|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~--p~~~~~~~ 210 (323)
T d1fcha_ 134 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL-SVR--PNDYLLWN 210 (323)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHH
T ss_pred cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccc-ccc--cccccchh
Confidence 0112234444444444433 1122344555555555666666666666666554 322 32 33445
Q ss_pred HHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 142 PALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 142 ~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.+-..|.+.|+.++|.. ...|..|-.+|.+.|++++|...|.+-.
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555566666666555 1114445555556666666666655543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.0019 Score=53.82 Aligned_cols=160 Identities=13% Similarity=0.031 Sum_probs=111.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 32 SCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
.+.+.|++++|+..|+++.+.. |-+..+|..+-..+...+. +++|...|....+.. +-+...|..+...|
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ--------ELLAISALRRCLELK-PDNQTALMALAVSF 97 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------hHHHHHHHHhhhccc-cccccccccccccc
Confidence 4778999999999999998763 3456777777775555443 999999999987633 23577888899999
Q ss_pred HcCCCHHHHHHHHHHhhhhcC-----------------------------------------------CCC---CcccHH
Q 048764 112 ASKKDSDYAFELIKRMNNEFN-----------------------------------------------VVP---RLRTYD 141 (295)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~g-----------------------------------------------i~P---~~~ty~ 141 (295)
...|++++|.+.++... ... +.| +...+.
T Consensus 98 ~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 98 TNESLQRQACEILRDWL-RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HHTTCHHHHHHHHHHHH-HTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred cccccccccccchhhHH-HhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 99999999999888754 211 112 223344
Q ss_pred HHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh-hHHHHHHHHH
Q 048764 142 PALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWF 204 (295)
Q Consensus 142 ~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~-~t~~~l~~~~ 204 (295)
.+-..+...|+.++|.. ...|..+-..+...|++++|...+.+..+. .|+. ..+..+-..+
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 250 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISC 250 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 55566677888888777 112666777788888899888888887663 4543 3343333333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.028 Score=44.62 Aligned_cols=96 Identities=11% Similarity=-0.023 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+=..|.+.|++++|+..|++..+.. +-+..+|+.+-.++...+. +++|...|++..+... -+..+|
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p-~~~~a~ 108 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN--------FDAAYEAFDSVLELDP-TYNYAH 108 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT-TCTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHH--------HHHhhhhhhHHHHHHh-hhhhhH
Confidence 67667778999999999999999988653 3456677777665555443 9999999999988432 245678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
..+-..|...|++++|...|+... ..
T Consensus 109 ~~lg~~~~~~g~~~~A~~~~~~al-~~ 134 (259)
T d1xnfa_ 109 LNRGIALYYGGRDKLAQDDLLAFY-QD 134 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-hh
Confidence 888899999999999999999877 44
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.0012 Score=48.04 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH-HHHH
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE-ALVT 105 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~-~ty~ 105 (295)
..+++.+...+++++|.+.|+.....+ +.+..++..+-.++...+. .+++++|..+|++....+..|+. .+|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~-----~~d~~~Ai~~l~~~l~~~~~~~~~~~~~ 76 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRY-----NDDIRKGIVLLEELLPKGSKEEQRDYVF 76 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSS-----HHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence 467888899999999999999988764 4566666666654443321 22477899999999886654543 4777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHH
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL 144 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll 144 (295)
.|-.+|.+.|++++|...|+... . +.|+-.-...+.
T Consensus 77 ~Lg~~y~~~g~~~~A~~~~~~aL-~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 77 YLAVGNYRLKEYEKALKYVRGLL-Q--TEPQNNQAKELE 112 (122)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-H--HCTTCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH-H--hCcCCHHHHHHH
Confidence 88899999999999999999998 5 458765544443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.021 Score=47.83 Aligned_cols=170 Identities=11% Similarity=0.086 Sum_probs=122.5
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc-CCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSN-SATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~-~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
.|+- .|+-+=..+.+.+..++|+.+++++.+.. |-+...|+..-..+.. +.. +++|...|+...+..
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~--------~~eal~~~~~al~~~- 108 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKD--------LHEEMNYITAIIEEQ- 108 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcC--------HHHHHHHHHHHHHHH-
Confidence 4554 77777777888999999999999998853 3344566666555444 433 899999999987743
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HH----HHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQ----EITAL 165 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~l 165 (295)
+-+..+|+.+-..+.+.|++++|++.|+.+. ... .-+...|..+...+.+.|+.++|.. .| .|+.+
T Consensus 109 p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal-~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r 186 (315)
T d2h6fa1 109 PKNYQVWHHRRVLVEWLRDPSQELEFIADIL-NQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 186 (315)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhhhhHHHHHhHHHHhhccHHHHHHHHhhhh-hhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHH
Confidence 2468899999999999999999999999998 544 3456788888899999999988887 11 24444
Q ss_pred HHHHHhcCC------HHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 166 LKVSAGTGR------VEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 166 l~~~~~~g~------~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
-..+.+.+. +++|...+.+.... .|+ +..|..+...+
T Consensus 187 ~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll 230 (315)
T d2h6fa1 187 YFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGIL 230 (315)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 333444333 67888888776653 454 45566555555
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.01 Score=42.10 Aligned_cols=99 Identities=6% Similarity=-0.080 Sum_probs=77.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
=..+.+.|++++|+..|++..+.. +-+...|..+-..+ ..+. +++|...|....+.+ +.+...|..+-
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~al~~~-p~~~~~~~~~g 78 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD---------YQKAYEDGCKTVDLK-PDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-Ccchhhhhccccccccccc---------ccccchhhhhHHHhc-cchhhHHHHHH
Confidence 456788999999999999988753 45666677666644 4454 999999999998754 35788999999
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDP 142 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ 142 (295)
.++...|++++|+..|+.-. . +.|+...+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~-~--~~p~~~~~~~ 109 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGL-K--HEANNPQLKE 109 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-T--TCTTCHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH-H--hCCCCHHHHH
Confidence 99999999999999999987 4 4577554433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0065 Score=45.52 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+...=..|.+.|++++|+..|.+..+.. +-+...|..+-..+...+. +++|...|+..++.. +-+..+|
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~kal~~~-p~~~~a~ 81 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIKGY 81 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccc--------cchHHHHHHHHHHHc-ccchHHH
Confidence 34445567889999999999999988764 4466666666665555553 999999999988743 3456889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
..+..+|...|++++|...|++.. .. .|+..
T Consensus 82 ~~~g~~~~~~g~~~eA~~~~~~a~-~~--~p~~~ 112 (159)
T d1a17a_ 82 YRRAASNMALGKFRAALRDYETVV-KV--KPHDK 112 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCH
Confidence 999999999999999999999988 54 36543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.92 E-value=0.0095 Score=45.71 Aligned_cols=93 Identities=10% Similarity=0.005 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~t 103 (295)
.+.-.=..|.+.|++++|+..|.+..... +-+...|+.+-..+...+. +++|...|+...+ +.| +..+
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~--------~~~Ai~~~~~al~--l~p~~~~a 74 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ--------PEQALADCRRALE--LDGQSVKA 74 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTT--SCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhh--------hhhhhHHHHHHHH--hCCCcHHH
Confidence 56666678899999999999999887663 4566667766665555553 9999999999876 345 4778
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
|..+-.+|...|++++|+..|+...
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.025 Score=43.83 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--H
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--E 159 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--e 159 (295)
++.|.+.|.++ .+|+..+|..+=..|...|++++|.+.|++-. ... .-+...|.-+-.+|.+.|+.++|.. +
T Consensus 21 ~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl-~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (192)
T d1hh8a_ 21 WKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLK 94 (192)
T ss_dssp HHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHH-HHh-hhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 99999999875 34788899999999999999999999999988 554 3345678888888999999999876 0
Q ss_pred --------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCC
Q 048764 160 --------------------------QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCV 192 (295)
Q Consensus 160 --------------------------~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p 192 (295)
..+..+-.++.+.|++++|.+.|.........+
T Consensus 95 kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 95 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 113344556788999999999998876644444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.56 E-value=0.025 Score=43.48 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=74.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc--CC-CCCH------------------HhHHHHHH-HHHcCCCCCCcchHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSL--NF-RLSL------------------HHFNALLY-LCSNSATDPSLKDSALRHGFR 87 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~--g~-~pd~------------------~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~ 87 (295)
-......|++++|...|.+.... |- .++. ..+..+.. +...++ +++|..
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~---------~~~Al~ 88 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGR---------ASAVIA 88 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------chHHHH
Confidence 35678899999999999998753 32 1221 23444555 333444 999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCCCCCccc
Q 048764 88 VFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN----EFNVVPRLRT 139 (295)
Q Consensus 88 lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi~P~~~t 139 (295)
.++.+.+.. +-|+..|..++.+|.+.|+.++|++.|+++.. ..|+.|...+
T Consensus 89 ~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 89 ELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999988743 35889999999999999999999999998752 4799998655
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.46 E-value=0.033 Score=42.73 Aligned_cols=94 Identities=10% Similarity=-0.079 Sum_probs=69.2
Q ss_pred HHHcCCCHHHHHHHHHHhhhhc--CC-CCC------------------cccHHHHHHHHHhcCCHHHhhc----------
Q 048764 110 LAASKKDSDYAFELIKRMNNEF--NV-VPR------------------LRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M~~~~--gi-~P~------------------~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
.....|++++|.+.|..-. .. |- -++ ...+..+...+.+.|+.++|..
T Consensus 20 ~~~~~g~~e~A~~~~~~AL-~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P 98 (179)
T d2ff4a2 20 HAAAAGRFEQASRHLSAAL-REWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP 98 (179)
T ss_dssp HHHHTTCHHHHHHHHHHHH-TTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHCCCHHHHHHHHHHHH-hhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 4556777777777777655 21 11 011 1245677778888888888888
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcccCCChhHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLR-----STVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~-----~~~~~p~~~t~~~l~~~~ 204 (295)
+..|..++.+|.+.|+..+|.+.|++++ +.|+.|++.+..+.....
T Consensus 99 ~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il 151 (179)
T d2ff4a2 99 YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 151 (179)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 5559999999999999999999999974 469999998877766655
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.017 Score=44.11 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A 156 (295)
+.|.+++|...|....+.. |-+..+|+.+-.+|.+.|++++|+..|+... . +.|+ ..+|..+-.+|.+.|+.++|
T Consensus 16 ~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al-~--l~p~~~~a~~~lg~~~~~l~~~~~A 91 (201)
T d2c2la1 16 VGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL-E--LDGQSVKAHFFLGQCQLEMESYDEA 91 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--SCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH-H--hCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 4567888888888776643 3467778888888888888888888888876 3 3464 34555666666666666666
Q ss_pred hc
Q 048764 157 YE 158 (295)
Q Consensus 157 ~~ 158 (295)
..
T Consensus 92 ~~ 93 (201)
T d2c2la1 92 IA 93 (201)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.36 E-value=0.023 Score=46.78 Aligned_cols=156 Identities=7% Similarity=-0.056 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|...-..|-..+++++|+..|.++.+- +-+++ ..+|+.+-..+...+. +++|...|+...+ .
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~--------~~~A~~~~~~a~~~~~~~ 110 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------SVNAVDSLENAIQIFTHR 110 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC--------cHHHHHHHHHhhHHhhhc
Confidence 6888888899999999999999988643 22232 3566777676665553 8888888886544 2
Q ss_pred CC-CCCHHHHHHHHHHHH-cCCCHHHHHHHHHHhhh---hcCCCCC-cccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 96 NV-IPNEALVTSVARLAA-SKKDSDYAFELIKRMNN---EFNVVPR-LRTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 96 g~-~pd~~ty~~li~~~~-~~g~~~~A~~l~~~M~~---~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
|- .....++..+...|- ..|++++|.+.+..... ..+-.+. ..+|..+...|...|+.++|..
T Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence 21 122455666666664 46999999999987652 1221121 3457778889999999999998
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 --------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 --------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...|..++-.+...|+.+.|...+.+..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred chhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 011344445566789999999999987654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.05 Score=41.94 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
-|+.- ..+...|+++.|++.|.++ .+|+..+|..+=..+...+. +++|.+.|++-.+.. +-+...|
T Consensus 8 l~~~g-~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~--------~~~A~~~~~kAl~ld-p~~~~a~ 73 (192)
T d1hh8a_ 8 LWNEG-VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKN--------MTEAEKAFTRSINRD-KHLAVAY 73 (192)
T ss_dssp HHHHH-HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCC--------chhHHHHHHHHHHHh-hhhhhhH
Confidence 45543 3467789999999999864 45677777777665555543 999999999988744 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhc------------CCCCCc---ccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEF------------NVVPRL---RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~------------gi~P~~---~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+.+-.+|.+.|++++|+..|++-. .. |+.... .++..+-.++.+.|+.++|.+
T Consensus 74 ~~~g~~~~~~g~~~~A~~~~~kAl-~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~ 141 (192)
T d1hh8a_ 74 FQRGMLYYQTEKYDLAIKDLKEAL-IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 141 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH-HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999865 32 111111 223445567889999999865
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.14 E-value=0.02 Score=40.15 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=67.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVAR 109 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~ 109 (295)
-..+.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|+...+-. +-+..+|..+-.
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~a~~~la~ 92 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLD-PKDIAVHAALAV 92 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhh--------HHHhhcccccccccc-cccccchHHHHH
Confidence 345778899999999999988653 2356666666665555553 999999999887743 345788888999
Q ss_pred HHHcCCCHHHHHHHHHHh
Q 048764 110 LAASKKDSDYAFELIKRM 127 (295)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M 127 (295)
.|...|++++|++.|++-
T Consensus 93 ~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 93 SHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999998864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.088 Score=42.99 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHh----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFR-LSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLS---- 94 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~-pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~---- 94 (295)
+|..+-..|.+.|++++|+..|++..+. |.. ....++..+...| ...+. +++|...|++..+
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~A~~~~~~A~~l~~~ 150 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD--------YAKAIDCYELAGEWYAQ 150 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHH--------HHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999976532 211 1234444444444 33332 8999999987643
Q ss_pred CCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc------cHHHHHHHHHhcCCHHHhhc
Q 048764 95 NNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR------TYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 95 ~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~------ty~~ll~~~~~~g~~~~A~~ 158 (295)
.+-++. ..+|+.+...|...|++++|+.+|++.. ......... .|..++..+...|+.+.|..
T Consensus 151 ~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~ 220 (290)
T d1qqea_ 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI-KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH-HhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHH
Confidence 232222 4568889999999999999999999977 432111111 12334445667888888866
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.076 Score=37.23 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
+++|..+|++..+.. +-+...|+.+-.+|.+.|++++|+..+.... ..+ ..+...
T Consensus 19 ~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~---------------------- 73 (117)
T d1elwa_ 19 IDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLK-PDWGKG---------------------- 73 (117)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHH----------------------
T ss_pred HHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHH-Hhc-cchhhH----------------------
Confidence 888888888887643 3456778888888888888888888888887 543 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
|..+-.++...|++++|...+++..+ ..|+.
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~p~~ 104 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLK--HEANN 104 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC
Confidence 44455567777777888877777665 34543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.095 Score=38.65 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+++|...|++..+.. +-+...|..+-..|...|++++|...|+... ... |+. ..|..+..+|...|+.++|..
T Consensus 26 y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal-~~~--p~~~~a~~~~g~~~~~~g~~~eA~~ 99 (159)
T d1a17a_ 26 YENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD--KKYIKGYYRRAASNMALGKFRAALR 99 (159)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHH-HHc--ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999988754 3467888888899999999999999999987 544 543 566666666666666666644
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.58 E-value=0.04 Score=45.14 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhh
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~ 157 (295)
.|.+++|...|++-++.. |-|...+..+...|+..|++++|...|+... .. .|+.. .+..+-..+...+..+++.
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~-~l--~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI-KL--FPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH--CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCcHHHHHHHHHHHHhccccHHHH
Confidence 345999999999998854 3578999999999999999999999999988 44 46543 3333334444444445544
Q ss_pred c---------HH-H---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 158 E---------EQ-E---ITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 158 ~---------e~-~---y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
. ++ . +......+.+.|+.++|..++.+..+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4 11 2 334455577889999999999998664
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.14 Score=42.50 Aligned_cols=151 Identities=9% Similarity=0.069 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSK-DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g-~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|+..-..+...+ ++++|+..|+...+.. +-+..+|+.+-..+...+. +++|...|+.+.+.. +-+...
T Consensus 79 a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~--------~~eAl~~~~kal~~d-p~n~~a 148 (315)
T d2h6fa1 79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQD-AKNYHA 148 (315)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhcc--------HHHHHHHHhhhhhhh-hcchHH
Confidence 7777776777765 6999999999987653 3456677766665544442 789999999998743 346899
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC------HHHhhc------------HHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLE------AQKAYE------------EQEITAL 165 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~------~~~A~~------------e~~y~~l 165 (295)
|+.+...+...|++++|++.|+... ... .-+...|+-+-..+.+.+. .++|+. +..|+.+
T Consensus 149 ~~~~~~~~~~~~~~~~Al~~~~~al-~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l 226 (315)
T d2h6fa1 149 WQHRQWVIQEFKLWDNELQYVDQLL-KED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYL 226 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999998 554 2244456655555555443 455554 2224444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048764 166 LKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 166 l~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
-..+ .....+++.+.+......
T Consensus 227 ~~ll-~~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 227 KGIL-QDRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHH-TTTCGGGCHHHHHHHHHH
T ss_pred HHHH-HhcChHHHHHHHHHHHHh
Confidence 3334 444467777777777653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=95.48 E-value=0.21 Score=36.64 Aligned_cols=95 Identities=12% Similarity=0.001 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCC-----------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF----RLS-----------LHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~----~pd-----------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
++...=..+.+.|++.+|+..|.+..+.-. .++ ..+|+.+-..+...+ .+++|.+.+
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~--------~~~~Al~~~ 90 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK--------DYPKAIDHA 90 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc--------ccchhhhhh
Confidence 455555678899999999999998774311 111 123333333222222 177777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+...+.+ +.+..+|-.+..+|...|++++|+..|+.-.
T Consensus 91 ~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 91 SKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 7766532 3456777777777777777777777777665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.47 Score=38.00 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN----FRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g----~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.++.+-..|...|++++|+..|++..+.. ..+. ..++..+...+...+. +..+...+.+... .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~al~~~~~~ 124 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF--------LQTAWETQEKAFQLINEQ 124 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHhc
Confidence 56667788999999999999999876432 2121 2233333333333332 7777777776543 2
Q ss_pred CCC--CC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC----CCCCcccHHHHHHHHHhcCCHHHhhc----------
Q 048764 96 NVI--PN-EALVTSVARLAASKKDSDYAFELIKRMNNEFN----VVPRLRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 96 g~~--pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g----i~P~~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
+.. +. ...+..+-..+...|+++.+...+.... ... ......++..+...+...|+...+..
T Consensus 125 ~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 203 (366)
T d1hz4a_ 125 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI-EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 203 (366)
T ss_dssp TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 221 22 2355666778888999999999988876 322 22223344455556667777777666
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 ---------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 ---------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...+..+...+...|+.++|...+.+....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 242 (366)
T d1hz4a_ 204 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 242 (366)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 011445555667778888888887765443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.32 E-value=0.054 Score=37.73 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQK 155 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~ 155 (295)
+++|...|++..... +-+..+|..+-..+.+.|++++|...|+... .. .|+ ...|..+-..|...|+.++
T Consensus 32 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 32 LAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHAR-ML--DPKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccc-cc--ccccccchHHHHHHHHHCCCHHH
Confidence 999999999987743 2258889999999999999999999999877 43 355 3333333333333333333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.22 Score=37.22 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC-------------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNF-RLS-------------LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQ 91 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd-------------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~ 91 (295)
+...=..+.+.|++++|+..|.+..+.-- .++ ..+|+.+-..|...+ .+++|...++.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~--------~~~~A~~~~~~ 87 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--------AFSAAIESCNK 87 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhh--------hcccccchhhh
Confidence 33344578899999999999998764311 110 122333333233333 27777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 92 MLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 92 M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..... |-+..+|..+-.+|...|++++|...|+...
T Consensus 88 al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 123 (170)
T d1p5qa1 88 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVL 123 (170)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66532 2366777777777777777777777777776
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.12 Score=36.66 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH---HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDS---DYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~---~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+++|.+.|+.....+ +.+..++..+-.++.+.++. ++|+.+|++.. ...-.|+.. .+
T Consensus 15 l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l-~~~~~~~~~--~~---------------- 74 (122)
T d1nzna_ 15 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQR--DY---------------- 74 (122)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHH--HH----------------
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hccCCchHH--HH----------------
Confidence 999999999988744 35678888888888876554 56999999987 443222211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
|..|=.+|.+.|++++|...+++..+ ..|+...+..+
T Consensus 75 ---~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 75 ---VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred ---HHHHHHHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 23344557788888888888888877 45766554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.12 Score=36.65 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC--CC---CC-
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN--VI---PN- 100 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g--~~---pd- 100 (295)
..+=..|.+.|++++|+..|.+..+.. +-+...|..+-..+...+. +++|...|+..++-. .. ++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~l~~~~~~~~~~~ 78 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD--------YNKCRELCEKAIEVGRENREDYRQI 78 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCc--------hHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344457889999999999999998764 4466777777665554442 999999999976611 11 11
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+|..+-..+...+++++|++.|..-.
T Consensus 79 a~~~~~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 79 AKAYARIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2477778888889999999999998866
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.68 Score=36.96 Aligned_cols=153 Identities=10% Similarity=-0.041 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF----RLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~----~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.+..+-..+...|+++.+...|........ .....++..+.. +...+. ...+...+.+... .
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~a~~~~~~a~~~~~~~ 205 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD---------LDNARSQLNRLENLLGNG 205 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHh
Confidence 555666788899999999999998875432 222333333333 333444 6666666665433 2
Q ss_pred CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC---cccHHHHHHHHHhcCCHHHhhc------------
Q 048764 96 NVIP--NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR---LRTYDPALFCFCENLEAQKAYE------------ 158 (295)
Q Consensus 96 g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~---~~ty~~ll~~~~~~g~~~~A~~------------ 158 (295)
+..+ ....+..+...+...|+++.|...+.... ......+ ...+..+...+...|+.++|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (366)
T d1hz4a_ 206 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 284 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc
Confidence 2112 23456667778888999999999999876 4332222 2334556778899999999888
Q ss_pred --HH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 --EQ----EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 --e~----~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.+ .|..+-..+.+.|+.++|.+.+.+-..
T Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 285 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 156666778899999999999987544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.09 Score=37.47 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
..|.+++|...|.+.++.+ +.+..+|..+-.+|.+.|++++|+..++.+. ... ..+...|..+-.+|
T Consensus 16 ~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~l~-~~~~~~~~~~a~~~---------- 82 (128)
T d1elra_ 16 KKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EVG-RENREDYRQIAKAY---------- 82 (128)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHH-HHSTTCHHHHHHHH----------
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH-HhC-cccHHHHHHHHHHH----------
Confidence 3456788888888777643 2457777778888888888888888888766 322 12233444444443
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 158 EEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 158 ~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+-..+...+++++|...+.+-..
T Consensus 83 -----~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 83 -----ARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3344445667888888888877544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.46 E-value=0.36 Score=39.71 Aligned_cols=113 Identities=10% Similarity=0.035 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHcC
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA-RLAASK 114 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li-~~~~~~ 114 (295)
.+++++|+.+|+...+.. +-+...|..+..++...+.. .+++|...+..+.+.. +++...+..++ ..+-..
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~ 157 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAA 157 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccc------cHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhc
Confidence 345788999998887653 33445555554433332210 2788999999887743 24566665444 566678
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+.++.|+..++... ... .-+...|+.+-..+.+.|+.++|..
T Consensus 158 ~~~~~Al~~~~~~i-~~~-p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 158 VAPAEELAFTDSLI-TRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp CCHHHHHHHHHTTT-TTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999998887 443 1234456666677777777666544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.79 Score=35.50 Aligned_cols=108 Identities=11% Similarity=-0.023 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCC-CCC--HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 048764 39 LATAISLYESALSLNF-RLS--LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK 115 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~-~pd--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g 115 (295)
.+.|+.-+++...... .++ ..+|..+=..+...+. +++|...|+...+-. +-+..+|+.+-.+|.+.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~--------~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g 85 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL--------RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 85 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHH
Confidence 4566667777765432 221 1233333234444442 999999999988732 235788999999999999
Q ss_pred CHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 116 DSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++++|+..|++.. .. .|+ ..+|..+-..|...|+.++|..
T Consensus 86 ~~~~A~~~~~~al-~~--~p~~~~a~~~lg~~~~~~g~~~~A~~ 126 (259)
T d1xnfa_ 86 NFDAAYEAFDSVL-EL--DPTYNYAHLNRGIALYYGGRDKLAQD 126 (259)
T ss_dssp CHHHHHHHHHHHH-HH--CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhhhhhHHH-HH--HhhhhhhHHHHHHHHHHHhhHHHHHH
Confidence 9999999999998 54 354 4467778888899999999888
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.36 E-value=0.37 Score=35.64 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------CCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN--------------FRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g--------------~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
.+...-..+.+.|++.+|+..|.++.+.- +.| +...|..+-..+...+. +++|+..|
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------~~~Ai~~~ 100 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------WQGAVDSC 100 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc--------cchhhhhh
Confidence 45556677889999999999998775310 011 22222322222233332 77788877
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+...+.. +-+..+|..+-.+|...|++++|++.|+...
T Consensus 101 ~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 138 (169)
T d1ihga1 101 LEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138 (169)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence 7777643 2456677777777777888888887777776
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=93.28 E-value=0.49 Score=34.96 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCH-----------HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL---NFRLSL-----------HHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~---g~~pd~-----------~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.+.-.=..+.+.|++.+|+..|.+.... ...++. ..|+.+-..+...+ .+++|+..++
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~--------~~~~Ai~~~~ 88 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--------EYTKAVECCD 88 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhh--------hcccchhhhh
Confidence 5566667789999999999999876531 111111 11222222223333 2888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 91 QMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 91 ~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
...+.. +.+..+|-.+..+|...|++++|...|.... .. .|+...
T Consensus 89 ~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al-~l--~P~n~~ 133 (168)
T d1kt1a1 89 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EV--NPQNKA 133 (168)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HS--CTTCHH
T ss_pred hhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHH
Confidence 776642 3567778888888888888888888888877 43 465443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=92.80 E-value=0.58 Score=34.03 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=44.1
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCC----------cccHHHHHHHHHhcCCHHHhhc----------------------
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPR----------LRTYDPALFCFCENLEAQKAYE---------------------- 158 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~----------~~ty~~ll~~~~~~g~~~~A~~---------------------- 158 (295)
+...|++++|+..|.+-..-..-.|+ ...|+.+-.+|.+.|++++|..
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 33456666666666655421111122 1345555556666666666655
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...|+.+=.+|...|++++|...|++..+
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00145556678888999999998888654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=92.65 E-value=0.067 Score=43.69 Aligned_cols=113 Identities=10% Similarity=0.047 Sum_probs=69.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 048764 33 CTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EALVTSVARL 110 (295)
Q Consensus 33 ~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~ 110 (295)
..+.|++++|+..|++..+.. +-|...+..|.. +|..++ +++|...|+...+. .|+ ...+..+...
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~---------~e~A~~~l~~a~~l--~P~~~~~~~~l~~l 73 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGD---------FERADEQLMQSIKL--FPEYLPGASQLRHL 73 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHH--CGGGHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 456799999999999988764 667888888888 667777 99999999998773 244 3444444444
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+...+..+++..-...-. ..+-.++...+......+...|+.++|..
T Consensus 74 l~a~~~~~~a~~~~~~~~-~~~~p~~~~~~l~~a~~~~~~gd~~~A~~ 120 (264)
T d1zbpa1 74 VKAAQARKDFAQGAATAK-VLGENEELTKSLVSFNLSMVSQDYEQVSE 120 (264)
T ss_dssp HHHHHHHHHHTTSCCCEE-CCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhccccHHHHHHhhhhh-cccCchHHHHHHHHHHHHHhCCCHHHHHH
Confidence 433333332222111111 11112233444455566778899888754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.62 Score=34.49 Aligned_cols=72 Identities=10% Similarity=-0.011 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHH
Q 048764 82 LRHGFRVFDQMLSN-NVIP-------------NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFC 146 (295)
Q Consensus 82 ~~~a~~lf~~M~~~-g~~p-------------d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~ 146 (295)
+++|...|.+.... ...+ -..+|+.+..+|.+.|++++|+..++.-. ... | +...|.-+-.+
T Consensus 29 ~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al-~~~--p~~~~a~~~~g~~ 105 (170)
T d1p5qa1 29 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL-ELD--SNNEKGLSRRGEA 105 (170)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh-hcc--ccchhhhHHHHHH
Confidence 88888888876552 1111 13567778888889999999999998887 543 5 34444444444
Q ss_pred HHhcCCHHHh
Q 048764 147 FCENLEAQKA 156 (295)
Q Consensus 147 ~~~~g~~~~A 156 (295)
|...|+.++|
T Consensus 106 ~~~~g~~~~A 115 (170)
T d1p5qa1 106 HLAVNDFELA 115 (170)
T ss_dssp HHHTTCHHHH
T ss_pred HHHhhhHHHH
Confidence 4444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=91.79 E-value=1.6 Score=31.44 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=65.4
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHhcC-CCCC----------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH
Q 048764 25 NFLIS--LQSCTKSKDLATAISLYESALSLN-FRLS----------LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQ 91 (295)
Q Consensus 25 t~~~l--i~~~~~~g~~~~A~~lf~~m~~~g-~~pd----------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~ 91 (295)
+|..+ -..+.+.|++++|+..|++..+.. --|+ ..+|+.+-..+...+. +++|..-+++
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~--------~~~A~~~~~~ 80 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHSADK 80 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc--------cchhhHhhhh
Confidence 66666 556667899999999999987522 1122 3566666664444442 8888888777
Q ss_pred HHh-----CCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 92 MLS-----NNVIPN-----EALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 92 M~~-----~g~~pd-----~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
... ....++ ..+|+.+-.+|...|++++|+..|++..
T Consensus 81 al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 81 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 654 122222 2256777889999999999999999865
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=91.04 E-value=1.9 Score=30.97 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhCC----CCCC-----------HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNN----VIPN-----------EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g----~~pd-----------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
+.+|...|.+....- ..++ ..+|+.+...|.+.|++++|++.+.... ... ..+..+
T Consensus 33 y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al-~~~-p~~~ka------- 103 (153)
T d2fbna1 33 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL-KID-KNNVKA------- 103 (153)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHH-------
T ss_pred HHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc-ccc-chhhhh-------
Confidence 788888888766511 1112 3467778888888999999999999877 443 223344
Q ss_pred HHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 147 FCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 147 ~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
|..+-.++...|++++|...|.+...
T Consensus 104 ---------------~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 104 ---------------LYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp ---------------HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------hHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444556666777777777766554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.50 E-value=7.6 Score=32.00 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSA 72 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~ 72 (295)
.|..++..+.+.+++..|++++.... +..+|.-++..|....
T Consensus 42 d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 42 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGK 83 (336)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCc
Confidence 34557777888888888777665431 3346666666555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.44 E-value=5.5 Score=28.61 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHH
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKV 178 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a 178 (295)
+...|+.+-..|.+.|++++|+..++... .. .|+. .. |..+-.++...|++++|
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al-~~--~p~~~~a----------------------~~~~g~~~~~l~~~~~A 130 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEAL-EI--DPSNTKA----------------------LYRRAQGWQGLKEYDQA 130 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TT--CTTCHHH----------------------HHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhh-hh--hhhhhhH----------------------HHhHHHHHHHccCHHHH
Confidence 44567777788888999999999999887 43 3543 22 33344456666777777
Q ss_pred HHHHHHHHH
Q 048764 179 YQYLQKLRS 187 (295)
Q Consensus 179 ~~ll~~m~~ 187 (295)
...|.+..+
T Consensus 131 ~~~~~~al~ 139 (169)
T d1ihga1 131 LADLKKAQE 139 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.23 E-value=1.3 Score=31.78 Aligned_cols=110 Identities=12% Similarity=0.038 Sum_probs=69.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcC-CCCC-CcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048764 33 CTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS-ATDP-SLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARL 110 (295)
Q Consensus 33 ~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~-~~~~-~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~ 110 (295)
|-+.+.+++|+..|+...+.. |-|...+..+=..+... .... ....+.+++|...|+...+-. |-+..+|..+-.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 344556899999999988764 44555555554433321 1100 011234788999999988743 2457788888777
Q ss_pred HHcCC-----------CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 111 AASKK-----------DSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 111 ~~~~g-----------~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
|...| .++.|.+.|+... .+.|+..+|...|..+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal---~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAV---DEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccc---ccCCCHHHHHHHHHHH
Confidence 76543 3567777777765 3568887776666544
|
| >d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: MIF4G domain-like domain: Eukaryotic initiation factor eIF4G species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.75 E-value=4.8 Score=30.34 Aligned_cols=150 Identities=9% Similarity=-0.002 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
...++|.-|...+|.++|..-+.++......+ .+.+..+....-++. ...+.+-+++..|.+.|+-+.....
T Consensus 12 k~~~il~Ey~~~~D~~Ea~~~l~el~~p~~~~-~~V~~~i~~~le~~~-------~~re~~~~Ll~~L~~~~~is~~~~~ 83 (193)
T d1ug3a1 12 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSA-------IAREHMGQLLHQLLCAGHLSTAQYY 83 (193)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCH-------HHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCchhHH-HHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 67889999999999999999998875322211 122222222333322 1256688899999988876655555
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHH
Q 048764 105 TSVARLAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQ 180 (295)
Q Consensus 105 ~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ 180 (295)
..+-+.+.. .=|...|..++.++. ..-+.-+..+.+-+.+...+ ...+.....+-+...|..+++....+.+.+
T Consensus 84 ~gf~~~l~~l~Dl~iDiP~a~~~la~~~-a~~i~~~~l~l~~l~~~~~~-~l~~~g~~~~l~~~~L~~l~~~~G~~~~~~ 161 (193)
T d1ug3a1 84 QGLYEILELAEDMEIDIPHVWLYLAELV-TPILQEGGVPMGELFREITK-PLRPLGKAASLLLEILGLLCKSMGPKKVGT 161 (193)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHHHH-GGGGSTTSCCHHHHHHHHTT-THHHHTCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhhhhhhhcchHHHHHHHHHH-HHHHHcCCCCHHHHHHHhcc-cccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 444444333 334555666666666 44444455554444332211 000001112335566666666555555555
Q ss_pred HHHH
Q 048764 181 YLQK 184 (295)
Q Consensus 181 ll~~ 184 (295)
++.+
T Consensus 162 l~~~ 165 (193)
T d1ug3a1 162 LWRE 165 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.15 E-value=2.6 Score=28.38 Aligned_cols=63 Identities=10% Similarity=0.182 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
.=++++-+..+-...+.|+....++-+++|-+-.|+..|.++|+..+.+. .++...|..+++-
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilqe 84 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 84 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 44677777777788889999999999999999999999999999888333 3455577776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.88 E-value=11 Score=30.04 Aligned_cols=149 Identities=9% Similarity=0.007 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHh-HHHHHHHHHc-CC-CCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHH-FNALLYLCSN-SA-TDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t-y~~ll~~~~~-~~-~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
.+..++...-+....++|+.++++..+. .|+..+ |+..-.++.. .. .......+.+++|+.+|+...+.+ +-+.
T Consensus 31 ~~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~ 107 (334)
T d1dcea1 31 ATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSY 107 (334)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcH
Confidence 3344444444444458999999998864 455443 3332222221 11 111223445889999999987743 3467
Q ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHhhhhcCCCCCcccHHHHH-HHHHhcCCHHHhhc------------HHHHHHHH
Q 048764 102 ALVTSVARLAASKK--DSDYAFELIKRMNNEFNVVPRLRTYDPAL-FCFCENLEAQKAYE------------EQEITALL 166 (295)
Q Consensus 102 ~ty~~li~~~~~~g--~~~~A~~l~~~M~~~~gi~P~~~ty~~ll-~~~~~~g~~~~A~~------------e~~y~~ll 166 (295)
..|..+..++...+ ++++|+..+..+. ... .++...+...+ ..+...+..+.|+. ...|+.+-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al-~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~ 185 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFL-EAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHH-hhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77888877777755 5889999999988 443 23344444333 45566788888877 12255555
Q ss_pred HHHHhcCCHHHH
Q 048764 167 KVSAGTGRVEKV 178 (295)
Q Consensus 167 ~~~~~~g~~~~a 178 (295)
..+...|+.++|
T Consensus 186 ~~~~~~~~~~~A 197 (334)
T d1dcea1 186 CLLPQLHPQPDS 197 (334)
T ss_dssp HHHHHHSCCCCS
T ss_pred HHHHHhcCHHHH
Confidence 566666665544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=81.54 E-value=7.4 Score=27.95 Aligned_cols=73 Identities=10% Similarity=-0.079 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHh---CCCCCC-----------HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 82 LRHGFRVFDQMLS---NNVIPN-----------EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 82 ~~~a~~lf~~M~~---~g~~pd-----------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
+.+|...|.+-.. ....++ ..+|+.+-.+|.+.|++++|+..++... ... ..+...|.-+-.+|
T Consensus 31 ~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al-~l~-p~~~~a~~~~~~~~ 108 (168)
T d1kt1a1 31 YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL-GLD-SANEKGLYRRGEAQ 108 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh-hcc-cchHHHHHHHHHHH
Confidence 7777777766443 111111 2346667777888999999999999887 443 23333444333444
Q ss_pred HhcCCHHHh
Q 048764 148 CENLEAQKA 156 (295)
Q Consensus 148 ~~~g~~~~A 156 (295)
...|++++|
T Consensus 109 ~~l~~~~~A 117 (168)
T d1kt1a1 109 LLMNEFESA 117 (168)
T ss_dssp HHTTCHHHH
T ss_pred HHcCCHHHH
Confidence 444443333
|