Citrus Sinensis ID: 048766
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FGL1 | 576 | Putative pentatricopeptid | yes | no | 0.975 | 0.888 | 0.529 | 1e-163 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.918 | 0.653 | 0.325 | 5e-81 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.916 | 0.690 | 0.312 | 9e-78 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.950 | 0.572 | 0.324 | 5e-77 | |
| Q9LYV3 | 822 | Putative pentatricopeptid | no | no | 0.967 | 0.618 | 0.301 | 7e-75 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.979 | 0.483 | 0.291 | 8e-75 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.979 | 0.592 | 0.296 | 1e-74 | |
| O49619 | 804 | Pentatricopeptide repeat- | no | no | 0.935 | 0.610 | 0.315 | 2e-74 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.965 | 0.596 | 0.309 | 3e-74 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.971 | 0.611 | 0.292 | 5e-74 |
| >sp|Q9FGL1|PP423_ARATH Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 576 bits (1484), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/517 (52%), Positives = 374/517 (72%), Gaps = 5/517 (0%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
P+ L HLLR S + G+ + C+QLH Y+ K GF+SN +S +LM FY+ +SL DAHK+
Sbjct: 53 PDASPLVHLLRVSGNYGYVSLCRQLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKV 112
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F E+P P V+SWNSL+SGYVQSG++++ + LF+EL RS+++ + +SFT+ALAAC +L
Sbjct: 113 FDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLS 172
Query: 121 QLGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
LG IHSK+VK LE+G VV+ NCLIDMYGKCG ++DA+ VF M +KD +SWN+++A+
Sbjct: 173 PLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVAS 232
Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
+RNG LEL F H++PNPDT++YNE+I+ + GD +A +LS MP+PNSSSWN+IL
Sbjct: 233 CSRNGKLELGLWFFHQMPNPDTVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTIL 292
Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
TGYVN + EA F +M S V DEY+ S +L+ +A L+ + WG LIH+C K GLD
Sbjct: 293 TGYVNSEKSGEATEFFTKMHSSGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLD 352
Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
+ +VVASAL+DMYSKCG ++ A+ MF ++ RKNL+ WN MI+GYARNGD + I+LF QL
Sbjct: 353 SRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQL 412
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K R L+PD TFLN+LA CSH ++P + + YFE M +Y IKP+VEHCCS+IR MGQ+
Sbjct: 413 KQERFLKPDRFTFLNLLAVCSHCEVPMEVMLGYFEMMINEYRIKPSVEHCCSLIRAMGQR 472
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD---YVYV 476
GEVW+A+++I+E GFG GV WRALL A A DL A+ AA++I+L GD+D Y+Y+
Sbjct: 473 GEVWQAKQVIQEFGFGYDGVAWRALLGACSARKDLKAAKTVAAKMIEL-GDADKDEYLYI 531
Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
++ NLY H W +R MRE G+ KE G SWI+
Sbjct: 532 VMSNLYAYHERWREVGQIRKIMRESGVLKEVGSSWID 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/516 (32%), Positives = 286/516 (55%), Gaps = 34/516 (6%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
PN+Y L++A++++ + Q LH +KS S+VFV+ +L+ Y L A K+
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F I + VVSWNS+I+G+VQ G KAL LF ++E ++ A + L+AC ++ +L
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
+ G + S I + + + +AN ++DMY KCGS+EDA +F M +KD ++W +++
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML--- 305
Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
+G A D E A +L+SMP + +WN++++
Sbjct: 306 ----------------------------DGYAISEDYEAAREVLNSMPQKDIVAWNALIS 337
Query: 241 GYVNRNRVPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
Y + EAL +F E+Q K++ +++ T + LS A + AL G IHS + K G+
Sbjct: 338 AYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR 397
Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
+ V SAL+ MYSKCG +E + +F S+ ++++ W+AMI G A +G + +++F ++
Sbjct: 398 MNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKM 457
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
+ +++P+ VTF NV ACSHT + D+ F M +YGI P +H ++ ++G+
Sbjct: 458 QEA-NVKPNGVTFTNVFCACSHTGL-VDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
G + +A + I + VW ALL A ++L++A ++ +++LE +D +V+L
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575
Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
N+Y G W+ S +R MR GL+KE GCS IE++
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 163/521 (31%), Positives = 279/521 (53%), Gaps = 40/521 (7%)
Query: 2 NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
NEY +L A S L Q+H I KS FLS+V++ +AL+ Y K ++ DA ++F
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210
Query: 62 VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
E+ +VVSWNSLI+ + Q+G +AL++F + S + D + S ++AC L +++
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270
Query: 122 LGMAIHSKIVKY-SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
+G +H ++VK L ++++N +DMY KC +++A +F M +++I+ S+I+
Sbjct: 271 VGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS-- 328
Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
G A + A ++ + M N SWN+++
Sbjct: 329 -----------------------------GYAMAASTKAARLMFTKMAERNVVSWNALIA 359
Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-- 298
GY EAL LF ++ + V Y+F+ +L A L+ L GM H V+K G
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKF 419
Query: 299 ----DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIE 354
+ I V ++L+DMY KCG VE +FR + ++ V+WNAMI G+A+NG + +E
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479
Query: 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414
LF ++ + +PD +T + VL+AC H ++ YF SMT+D+G+ P +H M+
Sbjct: 480 LFREMLESGE-KPDHITMIGVLSACGHAGF-VEEGRHYFSSMTRDFGVAPLRDHYTCMVD 537
Query: 415 LMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474
L+G+ G + A+ MI E+ V+W +LL+A ++ + + A +++++E +
Sbjct: 538 LLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGP 597
Query: 475 YVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
YV+L N+Y G W+ +R MR+ G+ K+ GCSWI+++
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQ 638
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 177/546 (32%), Positives = 278/546 (50%), Gaps = 47/546 (8%)
Query: 23 QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
+QLH +ILKSGF V +L+ FY K + A K+F E+ + V+SWNS+I+GYV +
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 274
Query: 83 GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
G K L++FV++ S I D + S A C + LG A+HS VK R
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC 334
Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP----N 198
N L+DMY KCG ++ A VF EM D+ ++S+ S+IA AR G A + +
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394
Query: 199 PDTISYNEVINGIAQF-----------------------------------GDIEDAIMI 223
PD + V+N A++ G +++A ++
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454
Query: 224 LSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSA 282
S M + SWN+I+ GY EAL LF + + K DE T + +L A LSA
Sbjct: 455 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514
Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
G IH +++ G + VA++L+DMY+KCG + +A +F + K+LV+W MI G
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 574
Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
Y +G + I LF Q++ ++ D ++F+++L ACSH+ + D+ +F M + I
Sbjct: 575 YGMHGFGKEAIALFNQMRQA-GIEADEISFVSLLYACSHSGL-VDEGWRFFNIMRHECKI 632
Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
+PTVEH ++ ++ + G++ +A R I + +W ALL D+ +A A
Sbjct: 633 EPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE 692
Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN-----V 517
+V +LE ++ YV++ N+Y W+ +R + +RGLRK GCSWIE++ V
Sbjct: 693 KVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFV 752
Query: 518 AAHSSN 523
A SSN
Sbjct: 753 AGDSSN 758
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 167/553 (30%), Positives = 285/553 (51%), Gaps = 45/553 (8%)
Query: 2 NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
N +V L+ L C LH I+K G+ SN FV AL+ Y S+ A +F
Sbjct: 145 NPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVF 204
Query: 62 VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
I +V W ++S YV++G + +L L + + + Y+F +AL A LG+
Sbjct: 205 EGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFD 264
Query: 122 LGMAIHSKIVK--YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
+H +I+K Y L+ V + L+ +Y + G + DA VF EM D++ W+ +IA
Sbjct: 265 FAKGVHGQILKTCYVLDPRVGVG--LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIAR 322
Query: 180 SARNGNLELAFGFLHRL------PNPDTISY----------------------------- 204
+NG A R+ PN T+S
Sbjct: 323 FCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLD 382
Query: 205 ----NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260
N +I+ A+ ++ A+ + + + S N SWN+++ GY N +A +F E
Sbjct: 383 IYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALR 442
Query: 261 KDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320
V + E TFS+ L A L+++ G+ +H IK + V+++L+DMY+KCG ++
Sbjct: 443 NQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKF 502
Query: 321 ADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
A S+F + ++ +WNA+I+GY+ +G + + + + +K RD +P+ +TFL VL+ CS
Sbjct: 503 AQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKD-RDCKPNGLTFLGVLSGCS 561
Query: 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440
+ + D+ E FESM +D+GI+P +EH M+RL+G+ G++ +A ++I + + ++
Sbjct: 562 NAGL-IDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMI 620
Query: 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500
WRA+LSAS ++ + AR SA E++K+ + YV++ N+Y W + +R M+E
Sbjct: 621 WRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKE 680
Query: 501 RGLRKEAGCSWIE 513
G++KE G SWIE
Sbjct: 681 MGVKKEPGLSWIE 693
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (719), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 162/555 (29%), Positives = 277/555 (49%), Gaps = 41/555 (7%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
P+ L L+ A S G QQLH Y K GF SN + AL+ Y K + A
Sbjct: 387 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 446
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F+E +VV WN ++ Y R + +F +++ EI + Y++ S L C +LG L
Sbjct: 447 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 506
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
+LG IHS+I+K + + + + LIDMY K G ++ A + KD++SW ++IA
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 566
Query: 181 ARNG-------------------------NLELAFGFLHRLPNPDTISYNEVINGIA--- 212
+ N A L L I ++G +
Sbjct: 567 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 626
Query: 213 -----------QFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK 261
+ G IE++ + + ++ +WN++++G+ EAL +F M +
Sbjct: 627 PFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686
Query: 262 DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321
+ + +TF + + + + + G +H+ + K G D+ V +AL+ MY+KCG + A
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746
Query: 322 DSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381
+ F + KN V+WNA+I Y+++G ++ ++ F+Q+ +++P+ VT + VL+ACSH
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM-IHSNVRPNHVTLVGVLSACSH 805
Query: 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441
+ DK YFESM +YG+ P EH ++ ++ + G + RA+ I+E+ +VW
Sbjct: 806 IGL-VDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864
Query: 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501
R LLSA ++++ +A +++LE + YV+L NLY WD + R M+E+
Sbjct: 865 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 924
Query: 502 GLRKEAGCSWIEVEN 516
G++KE G SWIEV+N
Sbjct: 925 GVKKEPGQSWIEVKN 939
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/553 (29%), Positives = 287/553 (51%), Gaps = 39/553 (7%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
PN + L ++ G Q+H ++K+G + VS +L+ Y K ++ A +
Sbjct: 192 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARIL 251
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F + SVV+WNS+ISGY +G +AL +F + + + SF S + C L L
Sbjct: 252 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKEL 311
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM-IDKDIISWNSVIAA 179
+ +H +VKY I L+ Y KC ++ DA+ +F E+ +++SW ++I+
Sbjct: 312 RFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISG 371
Query: 180 SARNGNLELAFGFLHRL------PNPDT----------ISYNEV---------------- 207
+N E A + PN T IS +EV
Sbjct: 372 FLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG 431
Query: 208 ---INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVP 264
++ + G +E+A + S + + +W+++L GY A+ +FGE+ +
Sbjct: 432 TALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIK 491
Query: 265 MDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323
+E+TFS++L+ A +A + G H IK LD+S+ V+SALL MY+K G +E A+
Sbjct: 492 PNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEE 551
Query: 324 MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383
+F+ K+LV+WN+MI+GYA++G K +++F+++K R ++ D VTF+ V AAC+H
Sbjct: 552 VFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKK-RKVKMDGVTFIGVFAACTHAG 610
Query: 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRA 443
+ ++ +YF+ M +D I PT EH M+ L + G++ +A ++I + + +WR
Sbjct: 611 L-VEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRT 669
Query: 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503
+L+A ++ R++A ++I ++ + YV+L N+Y G+W + +R M ER +
Sbjct: 670 ILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNV 729
Query: 504 RKEAGCSWIEVEN 516
+KE G SWIEV+N
Sbjct: 730 KKEPGYSWIEVKN 742
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 167/530 (31%), Positives = 281/530 (53%), Gaps = 39/530 (7%)
Query: 23 QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
+++H ++K GF+S+V+V +L+ Y K+ DA K+F E+P+ +VSWNS+ISGY+
Sbjct: 150 KKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLAL 209
Query: 83 GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG-VVI 141
G +L LF E+ + D +S SAL AC + S ++G IH V+ +E G V++
Sbjct: 210 GDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMV 269
Query: 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP---- 197
++DMY K G V A +F MI ++I++WN +I ARNG + AF ++
Sbjct: 270 MTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNG 329
Query: 198 -NPDTIS-----------YNEVINGIA--------------------QFGDIEDAIMILS 225
PD I+ I+G A + G ++ A +I
Sbjct: 330 LQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFD 389
Query: 226 SMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
M N SWNSI+ YV + AL LF E+ + D T +++L A +L+
Sbjct: 390 RMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSE 449
Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
G IH+ ++K ++ ++ ++L+ MY+ CG +E A F + K++V+WN++I YA
Sbjct: 450 GREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAV 509
Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT 405
+G + LF ++ R + P+ TF ++LAACS + + D+ EYFESM ++YGI P
Sbjct: 510 HGFGRISVWLFSEMIASR-VNPNKSTFASLLAACSISGM-VDEGWEYFESMKREYGIDPG 567
Query: 406 VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465
+EH M+ L+G+ G A+R + E+ F +W +LL+AS D+ +A +A ++
Sbjct: 568 IEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIF 627
Query: 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVE 515
K+E D+ YV+L N+Y G W+ + ++ M +G+ + + S +E +
Sbjct: 628 KMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAK 677
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 174/563 (30%), Positives = 298/563 (52%), Gaps = 56/563 (9%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMG-FYRKINSLADAH 58
PN+Y ++RA S+ + + +++K+G F S+V V +L+ F + NS +A+
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 59 KMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG 118
K+F ++ + +VV+W +I+ +Q G R+A+ F+++ S +D ++ +S +AC +L
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283
Query: 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC---GSVEDAIGVFGEMIDKDIISWNS 175
+L LG +HS ++ L V + L+DMY KC GSV+D VF M D ++SW +
Sbjct: 284 NLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTA 341
Query: 176 VIAASARNGNLELAFGFL--------HRLPNPDTIS------------------------ 203
+I +N NL L H PN T S
Sbjct: 342 LITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFK 401
Query: 204 ---------YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHL 254
N VI+ + +EDA S+ N S+N+ L G +A L
Sbjct: 402 RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKL 461
Query: 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK 314
E+ +++ + +TF+++LSG+A + ++ G IHS V+K GL + V +AL+ MYSK
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK 521
Query: 315 CGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN 374
CG ++ A +F + +N+++W +MITG+A++G +V+E F Q+ ++P+ VT++
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQM-IEEGVKPNEVTYVA 580
Query: 375 VLAACSHTDIPFDKVSE---YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431
+L+ACSH + VSE +F SM +D+ IKP +EH M+ L+ + G + A I
Sbjct: 581 ILSACSHVGL----VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINT 636
Query: 432 LGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491
+ F + +VWR L A S+ ++ +++A ++++L+ + Y+ L N+Y G W+ +
Sbjct: 637 MPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEES 696
Query: 492 SVMRNFMRERGLRKEAGCSWIEV 514
+ MR M+ER L KE GCSWIEV
Sbjct: 697 TEMRRKMKERNLVKEGGCSWIEV 719
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 163/557 (29%), Positives = 289/557 (51%), Gaps = 47/557 (8%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
P+ Y+L +L A S L + +Q+H +IL+ G + + L+ Y K + AHK+
Sbjct: 247 PDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKL 306
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F +P +++SW +L+SGY Q+ +++A+ LF + + + D Y+ +S L +C L +L
Sbjct: 307 FNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHAL 366
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
G +H+ +K +L + N LIDMY KC + DA VF D++ +N++I
Sbjct: 367 GFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGY 426
Query: 181 ARNGN-------LELAFGFLHRLPNPDTISYNEVINGIAQFGDI---------------- 217
+R G L + RL P +++ ++ A +
Sbjct: 427 SRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLN 486
Query: 218 -------------------EDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM 258
+D+ ++ M + WNS+ GYV ++ EAL+LF E+
Sbjct: 487 LDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546
Query: 259 Q-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317
Q S++ P DE+TF+ M++ L+++ G H ++K+GL+ + + +ALLDMY+KCG
Sbjct: 547 QLSRERP-DEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605
Query: 318 VEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377
E A F S +++V WN++I+ YA +G+ K +++ E++ + ++P+ +TF+ VL+
Sbjct: 606 PEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS-EGIEPNYITFVGVLS 664
Query: 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437
ACSH + D + + FE M + +GI+P EH M+ L+G+ G + +A+ +I ++
Sbjct: 665 ACSHAGLVEDGLKQ-FELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPA 722
Query: 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497
+VWR+LLS ++++A +A I + + ML N+Y S G W A +R
Sbjct: 723 AIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRER 782
Query: 498 MRERGLRKEAGCSWIEV 514
M+ G+ KE G SWI +
Sbjct: 783 MKVEGVVKEPGRSWIGI 799
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| 359495958 | 601 | PREDICTED: putative pentatricopeptide re | 0.977 | 0.853 | 0.687 | 0.0 | |
| 147773503 | 625 | hypothetical protein VITISV_013509 [Viti | 0.977 | 0.820 | 0.685 | 0.0 | |
| 357482055 | 519 | hypothetical protein MTR_5g012660 [Medic | 0.977 | 0.988 | 0.614 | 0.0 | |
| 356540526 | 585 | PREDICTED: putative pentatricopeptide re | 0.982 | 0.882 | 0.603 | 0.0 | |
| 449505010 | 639 | PREDICTED: putative pentatricopeptide re | 0.982 | 0.807 | 0.580 | 1e-178 | |
| 449459042 | 582 | PREDICTED: putative pentatricopeptide re | 0.971 | 0.876 | 0.580 | 1e-176 | |
| 255588481 | 458 | pentatricopeptide repeat-containing prot | 0.838 | 0.960 | 0.638 | 1e-168 | |
| 297790915 | 576 | pentatricopeptide repeat-containing prot | 0.990 | 0.902 | 0.537 | 1e-165 | |
| 89257518 | 583 | PPR repeat containing protein [Brassica | 0.979 | 0.881 | 0.529 | 1e-163 | |
| 15238101 | 576 | pentatricopeptide repeat-containing prot | 0.975 | 0.888 | 0.529 | 1e-161 |
| >gi|359495958|ref|XP_003635122.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460-like [Vitis vinifera] gi|297744381|emb|CBI37355.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/522 (68%), Positives = 431/522 (82%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
PN Y L HL+RAS++LG + QQLH YIL+SGF SNVFVSTAL+ FY +I SL DAH +
Sbjct: 77 PNAYALLHLVRASTNLGLIPFGQQLHSYILRSGFGSNVFVSTALLNFYIRIESLKDAHNV 136
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
FVEIP+PSVVSWNSLISGY +G++R AL LF++LERS+I ADA+SFT+ALA CG L L
Sbjct: 137 FVEIPEPSVVSWNSLISGYAHAGQFRAALGLFLKLERSDICADAFSFTAALATCGHLSLL 196
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
+LG +IHSKIVK LE VV+ANCL+DMYGKCG V++AI VF +IDKDIISWN+VI+AS
Sbjct: 197 RLGESIHSKIVKSGLEWSVVVANCLVDMYGKCGYVQEAIRVFDSIIDKDIISWNTVISAS 256
Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
ARN LE AF +L ++P PDTISYNE+INGIAQFG+IEDAI ILSSMPSPNSSSWNSI+T
Sbjct: 257 ARNRKLEQAFSYLRQMPEPDTISYNELINGIAQFGNIEDAIQILSSMPSPNSSSWNSIIT 316
Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
GYVNR+ EAL F +MQSKD+ MD +TFS++LSGIAGL+AL WG+LIH C IK GLD
Sbjct: 317 GYVNRDLSWEALDFFSKMQSKDIEMDRFTFSSILSGIAGLAALKWGVLIHCCTIKCGLDE 376
Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
SIVV SAL+DMYSKCGQV+ A+ +F+SL RKNLVTWNAMI+G+A NG+ T+VI+LF+QLK
Sbjct: 377 SIVVGSALIDMYSKCGQVKNAEMLFQSLPRKNLVTWNAMISGFAHNGNFTEVIKLFKQLK 436
Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
T RDL+PD +TFLNVL ACSH IP +YFESM KD+GI+PT EHCCSMIRLMGQ+G
Sbjct: 437 TERDLKPDGITFLNVLLACSHNQIPLQVAIQYFESMIKDHGIEPTAEHCCSMIRLMGQRG 496
Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
EVWRA+RMI ELGF S G+VWR+LL A GAC DLDVA ++AA+VI+LEG +++VYVM+ N
Sbjct: 497 EVWRAERMIYELGFSSCGLVWRSLLGACGACGDLDVAEVAAAQVIELEGHNEFVYVMMSN 556
Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522
+Y +G W SV+R MRERG+RK AGCSWIEVENV SS
Sbjct: 557 MYACYGKWGDVSVVRKLMRERGVRKGAGCSWIEVENVIPASS 598
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147773503|emb|CAN66782.1| hypothetical protein VITISV_013509 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/522 (68%), Positives = 430/522 (82%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
PN Y L HL+RAS++LG + QQLH YIL+SGF SNVFVSTAL+ FY +I SL DAH +
Sbjct: 101 PNAYALLHLVRASTNLGLIPFGQQLHSYILRSGFGSNVFVSTALLNFYIRIESLKDAHNV 160
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
FVEIP+PSVVSWNSLISGY +G++R AL LF++LERS+I ADA+SFT+ALA CG L L
Sbjct: 161 FVEIPEPSVVSWNSLISGYAHAGQFRAALGLFLKLERSDICADAFSFTAALATCGHLSLL 220
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
+LG +IHSKIVK LE VV+ANCL+DMYGKCG V++AI VF +IDKDIISWN+VI+AS
Sbjct: 221 RLGESIHSKIVKSGLEWSVVVANCLVDMYGKCGYVQEAIRVFDSIIDKDIISWNTVISAS 280
Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
ARN LE AF +L ++P PDTISYNE+INGIAQFG+ EDAI ILSSMPSPNSSSWNSI+T
Sbjct: 281 ARNRKLEQAFSYLRQMPEPDTISYNELINGIAQFGNXEDAIQILSSMPSPNSSSWNSIIT 340
Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
GYVNR+ EAL F +MQSKD+ MD +TFS++LSGIAGL+AL WG+LIH C IK GLD
Sbjct: 341 GYVNRDLSWEALDFFSKMQSKDIEMDRFTFSSILSGIAGLAALKWGVLIHCCTIKCGLDE 400
Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
SIVV SAL+DMYSKCGQV+ A+ +F+SL RKNLVTWNAMI+G+A NG+ T+VI+LF+QLK
Sbjct: 401 SIVVGSALIDMYSKCGQVKNAEMLFQSLPRKNLVTWNAMISGFAHNGNFTEVIKLFKQLK 460
Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
T RDL+PD +TFLNVL ACSH IP +YFESM KD+GI+PT EHCCSMIRLMGQ+G
Sbjct: 461 TERDLKPDGITFLNVLLACSHNQIPLQVAIQYFESMIKDHGIEPTAEHCCSMIRLMGQRG 520
Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
EVWRA+RMI ELGF S G+VWR+LL A GAC DLDVA ++AA+VI+LEG +++VYVM+ N
Sbjct: 521 EVWRAERMIYELGFSSCGLVWRSLLGACGACGDLDVAEVAAAQVIELEGHNEFVYVMMSN 580
Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522
+Y +G W SV+R MRERG+RK AGCSWIEVENV SS
Sbjct: 581 MYACYGKWGDVSVVRKLMRERGVRKGAGCSWIEVENVIPASS 622
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357482055|ref|XP_003611313.1| hypothetical protein MTR_5g012660 [Medicago truncatula] gi|355512648|gb|AES94271.1| hypothetical protein MTR_5g012660 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/514 (61%), Positives = 405/514 (78%), Gaps = 1/514 (0%)
Query: 2 NEYVLFHLLRASSDLGWDTYCQQLHCYILKSG-FLSNVFVSTALMGFYRKINSLADAHKM 60
N L L+R ++DL + + QQ+H Y ++SG F +N++VST L+ FY K++ AH +
Sbjct: 4 NALALVDLIRTATDLCFHKFGQQIHSYAIRSGYFHANIYVSTTLIKFYVKMHLFTHAHNL 63
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
FVEIPQP+VVSWN+LISGYV +G+++KAL+LF +LERS+I ADA+SFTSA+ AC QL L
Sbjct: 64 FVEIPQPNVVSWNTLISGYVHAGQFKKALSLFTKLERSQICADAFSFTSAMVACAQLSLL 123
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
+LG +IHSK VK ++ V+ANCLIDMYGKCGSVE A+ +F ++ DKD+ISWNSVIAA
Sbjct: 124 KLGSSIHSKTVKLGMDNNTVVANCLIDMYGKCGSVERAVRIFSDIADKDVISWNSVIAAC 183
Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
A NGN+ L F FL +PNPD +SYN +INGIAQ G IEDA+ ILS+MP PNSSSWNS++T
Sbjct: 184 ANNGNIGLGFKFLQLMPNPDVVSYNGLINGIAQAGKIEDAVRILSTMPCPNSSSWNSVIT 243
Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
G+VNR+RVPEAL +FG+M K++ +DE+TFS +L+GIA LSALTWGMLIH C IK GLD+
Sbjct: 244 GFVNRSRVPEALEMFGKMHLKNLQIDEFTFSIILNGIASLSALTWGMLIHCCTIKYGLDS 303
Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
SIVV S+L+DMYSKCGQV A+S+F L +NLV+WNAMI GYARNGD + I LFE LK
Sbjct: 304 SIVVGSSLIDMYSKCGQVNDAESIFNVLSNRNLVSWNAMIYGYARNGDSAQAISLFELLK 363
Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
RD +PD +TFLNV++ACSH+ IPF+ +YF++M +YGI P+++HCCSMIRLMGQKG
Sbjct: 364 MERDTKPDGITFLNVISACSHSQIPFEMGIQYFDAMINEYGIAPSIKHCCSMIRLMGQKG 423
Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
E+ RAQ+MI ELGF S GVVWR+LL+A G DL VA I+AA+VI LE D DYVYVML N
Sbjct: 424 ELSRAQKMIHELGFESCGVVWRSLLAACGTQEDLHVAEIAAAKVIGLERDEDYVYVMLSN 483
Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEV 514
+Y S G W+ +V+R+ M ++ +RKEAG SWIEV
Sbjct: 484 MYASFGRWEDVNVIRSLMSKKRVRKEAGSSWIEV 517
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540526|ref|XP_003538739.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/517 (60%), Positives = 413/517 (79%), Gaps = 1/517 (0%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
PN + L +LL +S+L ++ QQLH Y+++SG+ S++ VST+L+ Y + +S +DAHK+
Sbjct: 64 PNSFALVNLLGLASNLNCPSFGQQLHSYVIRSGYFSHIHVSTSLIKLYVRTHSFSDAHKL 123
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
FVEI +PSVV+WN+LISGYV +G++R AL+ F L+RS + ADA SFTSAL+AC L
Sbjct: 124 FVEIAEPSVVTWNTLISGYVHTGQFRNALSFFTLLDRSHVCADAVSFTSALSACSLLSLF 183
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
+LG +IH KIVK + G V+ANCLI MYGKCGS+E A+ +F + I+KD+ISWNSVIAAS
Sbjct: 184 KLGSSIHCKIVKVGMADGTVVANCLIVMYGKCGSLERAVRIFSQTIEKDVISWNSVIAAS 243
Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
A NG++ELA+ FLH +PNPDT+SYN +INGIA+FG+++DA+ +LSS+PSPNSSSWNS++T
Sbjct: 244 ANNGDIELAYKFLHLMPNPDTVSYNGLINGIAKFGNMDDAVQVLSSLPSPNSSSWNSVIT 303
Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
G+VNRNR EAL +F +M ++V MDE+TFS +L+GIAGLSALTWGMLIH C IK GLDA
Sbjct: 304 GFVNRNRAREALDIFRKMHLRNVEMDEFTFSIILTGIAGLSALTWGMLIHCCTIKCGLDA 363
Query: 301 SIVVASALLDMYSKCGQVEIADSMF-RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
S+ V SAL+DMYSKCGQV+ A+S+F +L KNLV+WNAM++GYARNGD +VI LF+ L
Sbjct: 364 SVFVGSALIDMYSKCGQVKNAESIFVHALPNKNLVSWNAMLSGYARNGDSVRVIHLFQSL 423
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K R+++PD +TFLN+++ CSH++IPF+ YFESM +Y I P++EHCCSMIRLMGQK
Sbjct: 424 KMEREIKPDGITFLNLISVCSHSEIPFEVAIRYFESMIDEYKIAPSIEHCCSMIRLMGQK 483
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
GE+WRA+RMI ELGF S GVVWRALL A G +DL VA I+AA+VI+LE D DYVYVM+
Sbjct: 484 GELWRAERMIHELGFESCGVVWRALLGACGTQADLQVAEIAAAKVIELERDEDYVYVMMS 543
Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
N+Y S G W+ + +R FM +G+RKEAG SWIE+++
Sbjct: 544 NMYASCGRWEDVNAIRGFMSRKGIRKEAGSSWIEIDS 580
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505010|ref|XP_004162352.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/517 (58%), Positives = 386/517 (74%), Gaps = 1/517 (0%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
PN Y L L+RA + D+ QLH YIL+SGF SNVFV TA++ FY K S AHK+
Sbjct: 71 PNGYALVQLVRACTSHALDSCGHQLHSYILRSGFASNVFVGTAMVNFYIKTESFDSAHKL 130
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F E+PQPS+V+WNSLISGYV G++RKAL LF++L+ S D+YS + AL+A G LG L
Sbjct: 131 FDEMPQPSLVTWNSLISGYVHCGQFRKALCLFIQLDGSGNLVDSYSLSIALSASGHLGWL 190
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
LG +IHSK++K LE V+ANCLIDMYGKC S E A+ VF +MI KD ISWNSVIAAS
Sbjct: 191 ILGQSIHSKVIKLGLEDSTVVANCLIDMYGKCESFEGAVEVFNDMIGKDTISWNSVIAAS 250
Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
ARNG LE A +L ++P PDTIS+NE+ING AQFGDIE A+ ILS M SPNSSSWN++LT
Sbjct: 251 ARNGRLEQASRYLQQMPRPDTISFNELINGYAQFGDIEYAVEILSKMDSPNSSSWNAVLT 310
Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
GYV+R+ EAL F +M S DV MD++TFS++LSG+AGLSAL WG+ IH C+ K GLD
Sbjct: 311 GYVDRDETWEALSFFTKMHSCDVRMDQFTFSSILSGVAGLSALKWGLAIHCCITKCGLDT 370
Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
S VV SAL+ MYSKCG V A+ +F+SL +KNLV+WNAMI+G A NG +VI LFE+LK
Sbjct: 371 STVVGSALISMYSKCGHVNYAEMIFQSLPKKNLVSWNAMISGLAHNGKTMEVIHLFEKLK 430
Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
+D++PD++TFLN+L +CS +P + +Y++SM +DYGIKPT+EHCC+M+RLMGQ+G
Sbjct: 431 MTKDVKPDNITFLNILLSCSDNQVPLEATMQYYKSMVEDYGIKPTIEHCCTMVRLMGQRG 490
Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
+V+ ++R+I ELGF S G VWRALL A G DL +A+++AA+VI L DYVYVM+ N
Sbjct: 491 DVYGSKRLIHELGFDSSGPVWRALLGACGVLRDLKLAKVAAAKVIVLGAADDYVYVMMSN 550
Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSW-IEVEN 516
++ SHG W ++R MR +G+RKE G SW IE+E
Sbjct: 551 IFASHGKWRDVKLVRELMRNKGVRKETGYSWLIEMET 587
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459042|ref|XP_004147255.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 296/510 (58%), Positives = 381/510 (74%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
PN Y L L+RA + D+ QLH YIL+SGF SNVFV TA++ FY K S AHK+
Sbjct: 71 PNGYALVQLVRACTSHALDSCGHQLHSYILRSGFASNVFVGTAMVNFYIKTESFDSAHKL 130
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F E+PQPS+V+WNSLISGYV G++RKAL LF++L+ S D+YS + AL+A G LG L
Sbjct: 131 FDEMPQPSLVTWNSLISGYVHCGQFRKALCLFIQLDGSGNLVDSYSLSIALSASGHLGWL 190
Query: 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAAS 180
LG +IHSK++K LE V+ANCLIDMYGKC S E A+ VF +MI KD ISWNSVIAAS
Sbjct: 191 ILGQSIHSKVIKLGLEDSTVVANCLIDMYGKCESFEGAVEVFNDMIGKDTISWNSVIAAS 250
Query: 181 ARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILT 240
ARNG LE A +L ++P PDTIS+NE+ING AQFGDIE A+ ILS M SPNSSSWN++LT
Sbjct: 251 ARNGRLEQASRYLQQMPRPDTISFNELINGYAQFGDIEYAVEILSKMDSPNSSSWNAVLT 310
Query: 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
GYV+R+ EAL F +M S DV MD++TFS++LSG+AGLSAL WG+ IH C+ K GLD
Sbjct: 311 GYVDRDETWEALSFFTKMHSCDVRMDQFTFSSILSGVAGLSALKWGLAIHCCITKCGLDT 370
Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
S VV SAL+ MYSKCG V A+ +F+SL +KNLV+WNAMI+G A NG +VI LFE+LK
Sbjct: 371 STVVGSALISMYSKCGHVNYAEMIFQSLPKKNLVSWNAMISGLAHNGKTMEVIHLFEKLK 430
Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
+D++PD++TFLN+L +CS +P + +Y++SM +DYGIKPT+EHCC+M+RLMGQ+G
Sbjct: 431 MTKDVKPDNITFLNILLSCSDNQVPLEATMQYYKSMVEDYGIKPTIEHCCTMVRLMGQRG 490
Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
+V+ ++R+I ELGF S G VWRALL A G DL +A+++AA+VI L DYVYVM+ N
Sbjct: 491 DVYGSKRLIHELGFDSSGPVWRALLGACGVLRDLKLAKVAAAKVIVLGAADDYVYVMMSN 550
Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCS 510
++ SHG W ++R MR +G+RKE G S
Sbjct: 551 IFASHGKWRDVKLVRELMRNKGVRKETGYS 580
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255588481|ref|XP_002534617.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223524904|gb|EEF27768.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 284/445 (63%), Positives = 353/445 (79%)
Query: 74 SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY 133
+L+ +G +RKAL LF++L RS++ DAYSFT AL+ACGQL LQ G +IH KIVK
Sbjct: 13 TLLHKVALTGHFRKALGLFLQLNRSDVCPDAYSFTVALSACGQLSMLQFGRSIHCKIVKC 72
Query: 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193
S + GVV+ NCLIDMYGKC SV++A VF ++IDKDIISWNSVIAA ARNG LELA+ F
Sbjct: 73 SSDCGVVVGNCLIDMYGKCASVKEATWVFDKLIDKDIISWNSVIAACARNGRLELAYNFF 132
Query: 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH 253
++P DTISYNEVINGIAQFG+IEDAI IL +MP NSSSWNS++T YVNRN+ EAL
Sbjct: 133 CQMPELDTISYNEVINGIAQFGNIEDAIAILLNMPHSNSSSWNSVITAYVNRNQAREALE 192
Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
F +M S D+ DEYT+S +LSG+AG +A WGMLIH C IK G D S+VV SAL+DMYS
Sbjct: 193 FFTKMHSSDIKKDEYTYSVILSGVAGAAAWKWGMLIHCCAIKGGWDTSVVVGSALIDMYS 252
Query: 314 KCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL 373
KCGQV+ A+SMF+SL +NL+TWNAMI+GYA NG+ ++I+ FE++K V DL+PDSVTFL
Sbjct: 253 KCGQVKSAESMFQSLPVRNLITWNAMISGYAHNGNSYEMIQHFEEMKMVEDLKPDSVTFL 312
Query: 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433
NV++ACS+T++P K YFESM DY I+PT+EHCCSMIRLMGQ+GEVW+A+RMI EL
Sbjct: 313 NVISACSNTEVPLQKAVHYFESMINDYMIEPTIEHCCSMIRLMGQRGEVWQAKRMIYELA 372
Query: 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493
FGS GVVWRALLSA GAC +L VA+I+AA+VI+LEGD DYVYV + N++ S+G W+ S
Sbjct: 373 FGSCGVVWRALLSACGACRNLKVAKIAAAKVIELEGDDDYVYVTMSNIFASYGQWEDVSK 432
Query: 494 MRNFMRERGLRKEAGCSWIEVENVA 518
+R MR+R ++KE G SWIEVE VA
Sbjct: 433 VRKIMRQREVKKEVGRSWIEVEMVA 457
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790915|ref|XP_002863342.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309177|gb|EFH39601.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/523 (53%), Positives = 379/523 (72%), Gaps = 3/523 (0%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
P L HLLR S + G+ + C+QLH Y++K GF+SN +S +LM FY+ +SL DAHK+
Sbjct: 53 PGASPLVHLLRVSGNYGYVSLCRQLHGYVVKHGFVSNTRLSNSLMRFYKTSDSLEDAHKL 112
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F E+P P V+SWNSL+SGYVQSG++++ L LF++L RS++ + +SFT+ALAAC +L
Sbjct: 113 FDEMPDPDVISWNSLVSGYVQSGRFQEGLCLFLKLHRSDVLPNEFSFTAALAACARLHLW 172
Query: 121 QLGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
LG IHSKIVK LE+G VV+ NCLIDMYGKC S++DA+ VF M +KD +SWN+++A+
Sbjct: 173 PLGACIHSKIVKLGLEKGNVVVGNCLIDMYGKCASMDDAVLVFQHMEEKDTVSWNAIVAS 232
Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
+RNG LEL F H++PNPDT++YNE+I + GD +A +LS MP+ NSSSWN+IL
Sbjct: 233 CSRNGKLELGLWFFHQMPNPDTVTYNELIYAFVKSGDFNNAFQVLSDMPNRNSSSWNTIL 292
Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
TGYVN + EA F +M S V +DEY+ S +L+ IA L+ + WG LIH+C +K GLD
Sbjct: 293 TGYVNSEQSGEATEFFTKMHSSGVGLDEYSLSIVLAAIAALAVVPWGSLIHACALKLGLD 352
Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
+ +VVASAL+DMYSKCG ++ A+ MF ++ RKNL+ WNAMI+GYARNGD + I+LF QL
Sbjct: 353 SRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIMWNAMISGYARNGDSIEAIKLFNQL 412
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K R ++PD TFLN+LA CSH ++P + YFE M +YGIKP+VEHCCS+IR MGQ+
Sbjct: 413 KQERFMKPDRFTFLNLLAVCSHCEVPMEVTLGYFEMMINEYGIKPSVEHCCSIIRAMGQR 472
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL-EGDSD-YVYVM 477
GEVW+A+++I+E GFG GV WRALL A A DL A+ AA++I+L E D D YVY++
Sbjct: 473 GEVWQAKKVIQEFGFGYDGVAWRALLGACSARKDLKAAKTVAAKMIELGEADKDEYVYIV 532
Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
+ NLY H W S +R MRE+G+ KE G SWI+ +NVA
Sbjct: 533 MSNLYAYHERWREVSQIRKIMREKGVTKEVGSSWIQEQNVAVQ 575
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89257518|gb|ABD65008.1| PPR repeat containing protein [Brassica oleracea] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 274/517 (52%), Positives = 374/517 (72%), Gaps = 3/517 (0%)
Query: 5 VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEI 64
V+ HLLR S + G+ + C+QLH Y++K G++S +S +LM FY+ +SL DAH++F E+
Sbjct: 64 VMVHLLRVSGNHGYVSLCRQLHGYVVKHGYVSETRLSNSLMRFYKTSDSLEDAHRLFDEM 123
Query: 65 PQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGM 124
P P V+SWNSL+SGYVQSG+ ++ L LF++LERS ++ + +SFT+ALAAC +L LG
Sbjct: 124 PDPDVISWNSLVSGYVQSGRLQEGLCLFLDLERSNVFPNEFSFTAALAACARLKISWLGA 183
Query: 125 AIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARN 183
IHSKIVK +E+G VV+ NCLIDMYGKCGS++DA+ VF M +KD +SWN+++A+ +RN
Sbjct: 184 CIHSKIVKLGMEKGNVVVGNCLIDMYGKCGSMDDAVLVFRHMEEKDTVSWNAIVASCSRN 243
Query: 184 GNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYV 243
LEL F H++PNPDT++YNE+I+ + D A ILS MP+PNSSSWN+ILTGYV
Sbjct: 244 RKLELGLWFFHQMPNPDTVTYNELIDAFVKSEDFNSAFQILSCMPNPNSSSWNTILTGYV 303
Query: 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIV 303
N + EA F +M S V +DEY+ S +L+ IA L + WG +IHSC +K GLD+ +V
Sbjct: 304 NSEQSREATLFFTKMHSYGVRLDEYSLSIVLAAIAALVVVPWGRVIHSCGLKLGLDSRVV 363
Query: 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR 363
VASAL+DMYSKCG ++ A+ MF ++ RKNL+ WNAMI GYARNGD T+ I+LF QLK R
Sbjct: 364 VASALIDMYSKCGMLKQAELMFWTMPRKNLIAWNAMIYGYARNGDSTEAIKLFSQLKQER 423
Query: 364 DLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423
L+PD +TFLN+LA CSH ++P + YFE M +YGIKP VEHCCS+IR M ++G++W
Sbjct: 424 FLKPDGITFLNLLAVCSHCEVPMELTLGYFEMMVNEYGIKPRVEHCCSLIRAMARRGDIW 483
Query: 424 RAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKL-EGDSD-YVYVMLCNL 481
+A+++I+E GFG GV WRALL A A DL A+ A +++ L E D D YVY+++ NL
Sbjct: 484 QAKKVIQEFGFGFDGVAWRALLGACSAGKDLKAAKAVAGKIVVLGEVDEDEYVYIVMSNL 543
Query: 482 YTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVA 518
Y H W S +R MRE+G+ KE G SWI+ +NVA
Sbjct: 544 YAYHEIWREVSQIRKIMREKGVEKEVGSSWIQEQNVA 580
|
Source: Brassica oleracea Species: Brassica oleracea Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238101|ref|NP_199557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170446|sp|Q9FGL1.1|PP423_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g47460 gi|9758774|dbj|BAB09072.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332008139|gb|AED95522.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/517 (52%), Positives = 374/517 (72%), Gaps = 5/517 (0%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
P+ L HLLR S + G+ + C+QLH Y+ K GF+SN +S +LM FY+ +SL DAHK+
Sbjct: 53 PDASPLVHLLRVSGNYGYVSLCRQLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKV 112
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F E+P P V+SWNSL+SGYVQSG++++ + LF+EL RS+++ + +SFT+ALAAC +L
Sbjct: 113 FDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLS 172
Query: 121 QLGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
LG IHSK+VK LE+G VV+ NCLIDMYGKCG ++DA+ VF M +KD +SWN+++A+
Sbjct: 173 PLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVAS 232
Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL 239
+RNG LEL F H++PNPDT++YNE+I+ + GD +A +LS MP+PNSSSWN+IL
Sbjct: 233 CSRNGKLELGLWFFHQMPNPDTVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTIL 292
Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
TGYVN + EA F +M S V DEY+ S +L+ +A L+ + WG LIH+C K GLD
Sbjct: 293 TGYVNSEKSGEATEFFTKMHSSGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLD 352
Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
+ +VVASAL+DMYSKCG ++ A+ MF ++ RKNL+ WN MI+GYARNGD + I+LF QL
Sbjct: 353 SRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQL 412
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K R L+PD TFLN+LA CSH ++P + + YFE M +Y IKP+VEHCCS+IR MGQ+
Sbjct: 413 KQERFLKPDRFTFLNLLAVCSHCEVPMEVMLGYFEMMINEYRIKPSVEHCCSLIRAMGQR 472
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD---YVYV 476
GEVW+A+++I+E GFG GV WRALL A A DL A+ AA++I+L GD+D Y+Y+
Sbjct: 473 GEVWQAKQVIQEFGFGYDGVAWRALLGACSARKDLKAAKTVAAKMIEL-GDADKDEYLYI 531
Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
++ NLY H W +R MRE G+ KE G SWI+
Sbjct: 532 VMSNLYAYHERWREVGQIRKIMRESGVLKEVGSSWID 568
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| TAIR|locus:2168963 | 576 | AT5G47460 "AT5G47460" [Arabido | 0.975 | 0.888 | 0.504 | 1.4e-142 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.586 | 0.354 | 0.321 | 1.5e-77 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.716 | 0.450 | 0.306 | 1.5e-76 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.516 | 0.318 | 0.329 | 1.4e-71 | |
| TAIR|locus:2132452 | 686 | AT4G08210 "AT4G08210" [Arabido | 0.567 | 0.434 | 0.292 | 5.7e-71 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.525 | 0.277 | 0.329 | 3.3e-68 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.638 | 0.376 | 0.332 | 1e-67 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.525 | 0.418 | 0.321 | 2.4e-67 | |
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.523 | 0.358 | 0.321 | 5.8e-67 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.523 | 0.277 | 0.324 | 2.4e-65 |
| TAIR|locus:2168963 AT5G47460 "AT5G47460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
Identities = 261/517 (50%), Positives = 358/517 (69%)
Query: 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKM 60
P+ L HLLR S + G+ + C+QLH Y+ K GF+SN +S +LM FY+ +SL DAHK+
Sbjct: 53 PDASPLVHLLRVSGNYGYVSLCRQLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKV 112
Query: 61 FVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120
F E+P P V+SWNSL+SGYVQSG++++ + LF+EL RS+++ + +SFT+ALAAC +L
Sbjct: 113 FDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLS 172
Query: 121 QLGMAIHSKIVKYSLERG-VVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAA 179
LG IHSK+VK LE+G VV+ NCLIDMYGKCG ++DA+ VF M +KD +SWN+++A+
Sbjct: 173 PLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVAS 232
Query: 180 SARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIXXXXXXXXXXXXXXXXXX 239
+RNG LEL F H++PNPDT++YNE+I+ + GD +A
Sbjct: 233 CSRNGKLELGLWFFHQMPNPDTVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTIL 292
Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
TGYVN + EA F +M S V DEY+ S +L+ +A L+ + WG LIH+C K GLD
Sbjct: 293 TGYVNSEKSGEATEFFTKMHSSGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLD 352
Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
+ +VVASAL+DMYSKCG ++ A+ MF ++ RKNL+ WN MI+GYARNGD + I+LF QL
Sbjct: 353 SRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQL 412
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K R L+PD TFLN+LA CSH ++P + + YFE M +Y IKP+VEHCCS+IR MGQ+
Sbjct: 413 KQERFLKPDRFTFLNLLAVCSHCEVPMEVMLGYFEMMINEYRIKPSVEHCCSLIRAMGQR 472
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD---YVYV 476
GEVW+A+++I+E GFG GV WRALL A A DL A+ AA++I+L GD+D Y+Y+
Sbjct: 473 GEVWQAKQVIQEFGFGYDGVAWRALLGACSARKDLKAAKTVAAKMIEL-GDADKDEYLYI 531
Query: 477 MLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
++ NLY H W +R MRE G+ KE G SWI+
Sbjct: 532 VMSNLYAYHERWREVGQIRKIMRESGVLKEVGSSWID 568
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 100/311 (32%), Positives = 176/311 (56%)
Query: 207 VINGIAQFGDIEDAIXXXXXXXXXXXXXXXXXXTGYVNRNRVPEALHLFGEMQSKDVPMD 266
+++ + G +E+A GY A+ +FGE+ + +
Sbjct: 434 LLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPN 493
Query: 267 EYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325
E+TFS++L+ A +A + G H IK LD+S+ V+SALL MY+K G +E A+ +F
Sbjct: 494 EFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVF 553
Query: 326 RSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIP 385
+ K+LV+WN+MI+GYA++G K +++F+++K R ++ D VTF+ V AAC+H +
Sbjct: 554 KRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKK-RKVKMDGVTFIGVFAACTHAGL- 611
Query: 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALL 445
++ +YF+ M +D I PT EH M+ L + G++ +A ++I + + +WR +L
Sbjct: 612 VEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTIL 671
Query: 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505
+A ++ R++A ++I ++ + YV+L N+Y G+W + +R M ER ++K
Sbjct: 672 AACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKK 731
Query: 506 EAGCSWIEVEN 516
E G SWIEV+N
Sbjct: 732 EPGYSWIEVKN 742
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 1.5e-76, Sum P(2) = 1.5e-76
Identities = 121/395 (30%), Positives = 218/395 (55%)
Query: 139 VVIANCLIDMYGKCGS---VEDAIGVFGEM----IDKDIISWNSVIAASARNGNLELA-- 189
VV+ N +I+ Y + G+ + +A+ +F +M I ++++ S++ ASA +L L+
Sbjct: 416 VVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQ 475
Query: 190 -FGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIXXXXXXXXXXXXXXXXXXTGYVNRNR 247
G + + N D + + +I+ + ++D+ GYV ++
Sbjct: 476 IHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSE 535
Query: 248 VPEALHLFGEMQ-SKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306
EAL+LF E+Q S++ P DE+TF+ M++ L+++ G H ++K+GL+ + + +
Sbjct: 536 NEEALNLFLELQLSRERP-DEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITN 594
Query: 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ 366
ALLDMY+KCG E A F S +++V WN++I+ YA +G+ K +++ E++ + ++
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS-EGIE 653
Query: 367 PDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426
P+ +TF+ VL+ACSH + D + + FE M + +GI+P EH M+ L+G+ G + +A+
Sbjct: 654 PNYITFVGVLSACSHAGLVEDGLKQ-FELMLR-FGIEPETEHYVCMVSLLGRAGRLNKAR 711
Query: 427 RMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSH 485
+I ++ +VWR+LLS ++++A AAE+ L D + ML N+Y S
Sbjct: 712 ELIEKMPTKPAAIVWRSLLSGCAKAGNVELAE-HAAEMAILSDPKDSGSFTMLSNIYASK 770
Query: 486 GNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
G W A +R M+ G+ KE G SWI + N H
Sbjct: 771 GMWTEAKKVRERMKVEGVVKEPGRSWIGI-NKEVH 804
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.4e-71, Sum P(2) = 1.4e-71
Identities = 91/276 (32%), Positives = 151/276 (54%)
Query: 241 GYVNRNRVPEALHLFGEMQSKDVPM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
GY +AL L EM +D + +T S L A L+AL G IH+ ++
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQ 508
Query: 299 DA-SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357
+A + V++ L+DMY+KCG + A +F ++ KN VTW +++TGY +G + + +F+
Sbjct: 509 NAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFD 568
Query: 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417
+++ + + D VT L VL ACSH+ + D+ EYF M +G+ P EH ++ L+G
Sbjct: 569 EMRRI-GFKLDGVTLLVVLYACSHSGM-IDQGMEYFNRMKTVFGVSPGPEHYACLVDLLG 626
Query: 418 QKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477
+ G + A R+I E+ VVW A LS +++ +A ++ +L + D Y +
Sbjct: 627 RAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTL 686
Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
L NLY + G W + +R+ MR +G++K GCSW+E
Sbjct: 687 LSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
|
|
| TAIR|locus:2132452 AT4G08210 "AT4G08210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 5.7e-71, Sum P(2) = 5.7e-71
Identities = 88/301 (29%), Positives = 155/301 (51%)
Query: 212 AQFGDIEDAIXXXXXXXXXXXXXXXXXXTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271
A G+I+DA G V A +LF E+ + D++ S
Sbjct: 388 ANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVS 447
Query: 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK 331
+L + L++L WG IH IK+G ++ V A+AL+DMY KCG+++ +F + +
Sbjct: 448 NILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLER 507
Query: 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391
++V+W +I G+ +NG + + F ++ + ++P+ VTFL +L+AC H+ + ++
Sbjct: 508 DVVSWTGIIVGFGQNGRVEEAFRYFHKMINI-GIEPNKVTFLGLLSACRHSGL-LEEARS 565
Query: 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC 451
E+M +YG++P +EH ++ L+GQ G A +I ++ +W +LL+A G
Sbjct: 566 TLETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTSLLTACGTH 625
Query: 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSW 511
+ + + A +++K D VY L N Y + G WD S +R ++ G KE+G SW
Sbjct: 626 KNAGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREAAKKLGA-KESGMSW 684
Query: 512 I 512
I
Sbjct: 685 I 685
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 3.3e-68, Sum P(2) = 3.3e-68
Identities = 92/279 (32%), Positives = 168/279 (60%)
Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
+GY++ + +AL L M +D + ++T+LS A ++ L GM +H+C ++ L+
Sbjct: 592 SGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLE 651
Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
+ +VV SAL+DMYSKCG+++ A F ++ +N +WN+MI+GYAR+G + ++LFE +
Sbjct: 652 SDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETM 711
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K PD VTF+ VL+ACSH + ++ ++FESM+ YG+ P +EH M ++G+
Sbjct: 712 KLDGQTPPDHVTFVGVLSACSHAGL-LEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRA 770
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSD--LDVARISAAEVIKLEGDSDYVYVM 477
GE+ + + I ++ ++WR +L A + ++ + +A + +LE ++ YV+
Sbjct: 771 GELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVL 830
Query: 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
L N+Y + G W+ R M++ ++KEAG SW+ +++
Sbjct: 831 LGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKD 869
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 1.0e-67, Sum P(2) = 1.0e-67
Identities = 118/355 (33%), Positives = 192/355 (54%)
Query: 176 VIAASARNGNL---ELAFGFL-HRLPNPDTISYNEVINGIAQFGDIEDAIXXXXXXXXXX 231
V+ A R+G E GF+ R + D N +++ ++ G I+ A+
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470
Query: 232 XXXXXXXXTGYVNRNRVPEALHLFGEMQ------SK-----DVPMDEYTFSTMLSGIAGL 280
TGYV +AL L +MQ SK + + T T+L A L
Sbjct: 471 LVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAAL 530
Query: 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMI 340
SAL G IH+ IK L + V SAL+DMY+KCG ++++ +F + +KN++TWN +I
Sbjct: 531 SALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVII 590
Query: 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY 400
Y +G+ + I+L + V+ ++P+ VTF++V AACSH+ + D+ F M DY
Sbjct: 591 MAYGMHGNGQEAIDLLRMMM-VQGVKPNEVTFISVFAACSHSGM-VDEGLRIFYVMKPDY 648
Query: 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVAR 458
G++P+ +H ++ L+G+ G + A +++ + F G W +LL AS ++L++
Sbjct: 649 GVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGA-WSSLLGASRIHNNLEIGE 707
Query: 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513
I+A +I+LE + YV+L N+Y+S G WD A+ +R M+E+G+RKE GCSWIE
Sbjct: 708 IAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 2.4e-67, Sum P(2) = 2.4e-67
Identities = 90/280 (32%), Positives = 155/280 (55%)
Query: 242 YVNRNRVPEALHLFGEM-QSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300
Y EA +F + ++K V + T ST+L ++ AL G IH VI+ GL+
Sbjct: 261 YAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320
Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLK 360
++V ++++DMY KCG+VE A F + KN+ +W AMI GY +G K +ELF +
Sbjct: 321 DVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380
Query: 361 TVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420
++P+ +TF++VLAACSH + + +F +M +G++P +EH M+ L+G+ G
Sbjct: 381 D-SGVRPNYITFVSVLAACSHAGLHVEGW-RWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438
Query: 421 EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480
+ +A +I+ + ++W +LL+A ++++A IS A + +L+ + Y++L +
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSH 498
Query: 481 LYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520
+Y G W +R M+ RGL K G S +E+ N H
Sbjct: 499 IYADAGRWKDVERVRMIMKNRGLVKPPGFSLLEL-NGEVH 537
|
|
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 5.8e-67, Sum P(2) = 5.8e-67
Identities = 89/277 (32%), Positives = 162/277 (58%)
Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
T + + E L LF M + D T +L G +S+L G +H +K GL
Sbjct: 446 TACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLA 505
Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
+ + L+DMY+KCG + A +F S+ +++V+W+ +I GYA++G + + LF+++
Sbjct: 506 PEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEM 565
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K+ ++P+ VTF+ VL ACSH + + + Y +M ++GI PT EHC ++ L+ +
Sbjct: 566 KSA-GIEPNHVTFVGVLTACSHVGLVEEGLKLY-ATMQTEHGISPTKEHCSCVVDLLARA 623
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
G + A+R I E+ VVW+ LLSA ++ +A+ +A ++K++ + +V+LC
Sbjct: 624 GRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLC 683
Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
+++ S GNW+ A+++R+ M++ ++K G SWIE+E+
Sbjct: 684 SMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIED 720
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 457 (165.9 bits), Expect = 2.4e-65, Sum P(2) = 2.4e-65
Identities = 90/277 (32%), Positives = 159/277 (57%)
Query: 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299
+G + A H+F +M+ V DE+T +T+ + L+AL G IH+ +K
Sbjct: 591 SGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT 650
Query: 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQL 359
V ++L+DMY+KCG ++ A +F+ + N+ WNAM+ G A++G+ + ++LF+Q+
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQM 710
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K++ ++PD VTF+ VL+ACSH+ + + ++ SM DYGIKP +EH + +G+
Sbjct: 711 KSL-GIKPDKVTFIGVLSACSHSGL-VSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479
G V +A+ +I + + ++R LL+A D + + A ++++LE YV+L
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828
Query: 480 NLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVEN 516
N+Y + WD + R M+ ++K+ G SWIEV+N
Sbjct: 829 NMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 865
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FGL1 | PP423_ARATH | No assigned EC number | 0.5299 | 0.9752 | 0.8888 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 525 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-92 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-75 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-55 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-38 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-34 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-34 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 1e-92
Identities = 165/535 (30%), Positives = 271/535 (50%), Gaps = 45/535 (8%)
Query: 23 QQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQS 82
+++H ++++ GF +V V AL+ Y K + A +F +P+ +SWN++ISGY ++
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266
Query: 83 GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIA 142
G+ + L LF + + D + TS ++AC LG +LG +H +VK V +
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDIISWN---------------------------- 174
N LI MY GS +A VF M KD +SW
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 175 -------SVIAASARNGNLELAFGFLHRLP-NPDTISY----NEVINGIAQFGDIEDAIM 222
SV++A A G+L++ LH L ISY N +I ++ I+ A+
Sbjct: 387 PDEITIASVLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445
Query: 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282
+ ++P + SW SI+ G NR EAL F +M P + T LS A + A
Sbjct: 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP-NSVTLIAALSACARIGA 504
Query: 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342
L G IH+ V++ G+ + +ALLD+Y +CG++ A + F + K++V+WN ++TG
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTG 563
Query: 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402
Y +G + +ELF ++ + PD VTF+++L ACS + + + EYF SM + Y I
Sbjct: 564 YVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGL-EYFHSMEEKYSI 621
Query: 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAA 462
P ++H ++ L+G+ G++ A I ++ VW ALL+A +++ ++A
Sbjct: 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681
Query: 463 EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENV 517
+ +L+ +S Y++LCNLY G WD + +R MRE GL + GCSW+EV+
Sbjct: 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (644), Expect = 1e-75
Identities = 152/487 (31%), Positives = 247/487 (50%), Gaps = 42/487 (8%)
Query: 68 SVVSWNSLISGYVQSGKYRKALNLFVELE-RSEIYADAYSFTSALAACGQLGSLQLGMAI 126
S VS S I V G++R+AL LF LE A ++ + + AC L S++ A+
Sbjct: 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAV 145
Query: 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNL 186
+ + E + N ++ M+ KCG + DA +F EM ++++ SW ++I GN
Sbjct: 146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY 205
Query: 187 ELAFGFLHRL------PNP---------------------------------DTISYNEV 207
AF + P DT +
Sbjct: 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265
Query: 208 INGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
I+ ++ GDIEDA + MP + +WNS+L GY EAL L+ EM+ V +D+
Sbjct: 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327
+TFS M+ + L+ L H+ +I+ G IV +AL+D+YSK G++E A ++F
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 328 LCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387
+ RKNL++WNA+I GY +G TK +E+FE++ + P+ VTFL VL+AC ++ + +
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLS-E 443
Query: 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSA 447
+ E F+SM++++ IKP H MI L+G++G + A MIR F +W ALL+A
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503
Query: 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507
+L++ R++A ++ + + YV+L NLY S G A+ + ++ +GL
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
Query: 508 GCSWIEV 514
C+WIEV
Sbjct: 564 ACTWIEV 570
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 1e-55
Identities = 113/397 (28%), Positives = 194/397 (48%), Gaps = 43/397 (10%)
Query: 26 HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY 85
L S V + A++ + + L A +F ++P+ + SWN L+ GY ++G +
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF 168
Query: 86 RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145
+AL L+ + + + D Y+F L CG + L G +H+ +V++ E V + N L
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228
Query: 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG----NLELAFGFLHRLPNPDT 201
I MY KCG V A VF M +D ISWN++I+ NG LEL F +PD
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 202 ISYNEVINGIAQFGDI-----------------------------------EDAIMILSS 226
++ VI+ GD +A + S
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 227 MPSPNSSSWNSILTGYVNRNRVPE-ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285
M + ++ SW ++++GY +N +P+ AL + M+ +V DE T +++LS A L L
Sbjct: 349 METKDAVSWTAMISGYE-KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407
Query: 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR 345
G+ +H ++GL + +VVA+AL++MYSKC ++ A +F ++ K++++W ++I G
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467
Query: 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382
N + + F Q+ L+P+SVT + L+AC+
Sbjct: 468 NNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARI 502
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-38
Identities = 95/354 (26%), Positives = 160/354 (45%), Gaps = 43/354 (12%)
Query: 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPS 68
+LRAS+ LG QQLHC +LK+G + + FVS AL+ Y K + DA +F +P+ +
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289
Query: 69 VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHS 128
V+WNS+++GY G +AL L+ E+ S + D ++F+ + +L L+ H+
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 129 KIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188
+++ +V L+D+Y K G +EDA VF M K++ISWN++IA +G
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTK 409
Query: 189 AFGFLHRLPN----PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN 244
A R+ P+ +++ V++ G E I SM N
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE--------------N 455
Query: 245 RNRVPEALH------LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298
P A+H L G ++ +DE ++ + + W L+ +C I + L
Sbjct: 456 HRIKPRAMHYACMIELLG----REGLLDE-AYAMIRRAPFKPTVNMWAALLTACRIHKNL 510
Query: 299 DASIVVAS--------------ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNA 338
+ + A LL++Y+ G+ A + +L RK L A
Sbjct: 511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-34
Identities = 85/347 (24%), Positives = 153/347 (44%), Gaps = 40/347 (11%)
Query: 73 NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVK 132
NS + G+ +AL L ++ + D ++ + C +++ G + S+ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 133 YSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192
GV + N ++ M+ + G + A VFG+M ++D+ SWN ++ A+ G + A
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 193 LHRL----PNPDTISY-----------------------------------NEVINGIAQ 213
HR+ PD ++ N +I +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273
GD+ A ++ MP + SWN++++GY E L LF M+ V D T +++
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333
+S L G +H V+K G + V ++L+ MY G A+ +F + K+
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380
V+W AMI+GY +NG K +E + L ++ PD +T +VL+AC+
Sbjct: 355 VSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACA 400
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 5e-34
Identities = 106/415 (25%), Positives = 182/415 (43%), Gaps = 64/415 (15%)
Query: 6 LFHLLRA--SSDLGWDTY------CQQLHC---------YILKSGFLSNVFVSTALMGFY 48
LF +L A L TY C L ++ SGF + ++ ++ +
Sbjct: 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168
Query: 49 RKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFT 108
K L DA ++F E+P+ ++ SW ++I G V +G YR+A LF E+ A+ +F
Sbjct: 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK 168
L A LGS + G +H ++K + ++ LIDMY KCG +EDA VF M +K
Sbjct: 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288
Query: 169 DIISWNSVIAA-----------------------------------SARNGNLELA---- 189
++WNS++A +R LE A
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 190 FGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVP 249
G + D ++ +++ +++G +EDA + MP N SWN+++ GY N R
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 250 EALHLFGEMQSKDVPMDEYTFSTMLSGIA--GLSALTWGMLIHSCVIKQGLDASIVVASA 307
+A+ +F M ++ V + TF +LS GLS W + S + + +
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW-EIFQSMSENHRIKPRAMHYAC 467
Query: 308 LLDMYSKCGQVEIADSMFRSLCRKNLVT-WNAMITG--YARNGDLTKVIELFEQL 359
++++ + G ++ A +M R K V W A++T +N +L ++ E+L
Sbjct: 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAA--EKL 520
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 88/372 (23%), Positives = 164/372 (44%), Gaps = 25/372 (6%)
Query: 64 IPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123
I P++ ++N L+S S AL + ++ + + AD +T+ ++ C + G +
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----ISWNSVIAA 179
+ ++V +E V LID + G V A G +G M K++ + +N++I+A
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 180 SARNGNLELAFGFLHRLP------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS 233
++G ++ AF L + +PD I+ ++ A G ++ A + + N
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 234 SWNSILTGYVN----RNRVPEALHLFGEMQSKDVPMDEYTFSTML--SGIAGLSALTWGM 287
+ T VN + AL ++ +M+ K V DE FS ++ +G AG + +
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSL----CRKNLVTWNAMITGY 343
L KQG+ V S+L+ S + A ++ + R + T NA+IT
Sbjct: 672 L--QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403
L K +E+ ++K + L P+++T+ +L A D D + +D GIK
Sbjct: 730 CEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKD-DADVGLDLLSQAKED-GIK 786
Query: 404 PTVEHCCSMIRL 415
P + C + L
Sbjct: 787 PNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 48/191 (25%), Positives = 98/191 (51%), Gaps = 4/191 (2%)
Query: 2 NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMF 61
+++ ++R S L + +Q H ++++GF ++ +TAL+ Y K + DA +F
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 62 VEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ 121
+P+ +++SWN+LI+GY G+ KA+ +F + + + +F + L+AC G +
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 122 LGMAIHSKI--VKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS-WNSVIA 178
G I + R + A C+I++ G+ G +++A + K ++ W +++
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYA-CMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502
Query: 179 ASARNGNLELA 189
A + NLEL
Sbjct: 503 ACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 8e-12
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276
P+ ++N+++ GY + +V EAL LF EM+ + + + YT+S ++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 9e-11
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 224 LSSMPSPNSSSW--NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281
LS S +SS+ NS L + ++ +AL L MQ VP+DE + +
Sbjct: 41 LSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKR 100
Query: 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMIT 341
A+ G + S + + + +A+L M+ + G++ A +F + ++L +WN ++
Sbjct: 101 AVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160
Query: 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379
GYA+ G + + L+ ++ ++PD TF VL C
Sbjct: 161 GYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-09
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114
P VV++N+LI GY + GK +AL LF E+++ I + Y+++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 14/46 (30%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 331 KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376
++VT+N +I GY + G + + ++LF ++K R ++P+ T+ ++L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTY-SIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 70 VSWNSLISGYVQSGKYRKALNLFVELERSEI 100
V++NSLISGY ++GK +AL LF E++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 334 VTWNAMITGYARNGDLTKVIELFEQLK 360
VT+N++I+GY + G L + +ELF+++K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 77/378 (20%), Positives = 151/378 (39%), Gaps = 80/378 (21%)
Query: 146 IDMYG---KCGSVEDAIGVFGEMIDKDIISWNSVIAAS-----ARNGNLELAFGFLHRLP 197
ID Y + G ++D I + +M + ++ + + A + ++ AF F +
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 198 NPDTISYNEVINGIAQFGDIEDAIMIL----SSMPSPNSSSWNSILTGYVNRNRVPEALH 253
NP ++N +++ A DI+ A+ +L + + + ++++ +V
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 254 LFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313
+F EM + V + +TF ++ G A
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCA----------------------------------- 518
Query: 314 KCGQVEIADSMFRSLCRKNL----VTWNAMITGYARNGDLTKVIELFEQLKT-VRDLQPD 368
+ GQV A + + KN+ V +NA+I+ ++G + + ++ ++K + PD
Sbjct: 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578
Query: 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE------HCCSMIRLMGQKGEV 422
+T ++ AC++ D+ E ++ + + Y IK T E + CS QKG+
Sbjct: 579 HITVGALMKACANAG-QVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCS------QKGDW 630
Query: 423 WRAQRMIREL---GFGSYGVVWRALLSASGACSDLDVA----RISAAEVIKLEGDSDYVY 475
A + ++ G V + AL+ +G DLD A + + + IKL G Y
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSS 689
Query: 476 VM--LCNLYTSHGNWDVA 491
+M N NW A
Sbjct: 690 LMGACSNA----KNWKKA 703
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 329 CRKNLVTWNAMITGYARNGDLTKVIELFEQ 358
+ ++VT+N +I G R G + + +EL ++
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369
VT+N +I G + G + + +ELF+++K R ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK-ERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 139 VVIANCLIDMYGKCGSVEDAIGVFGEMIDK----DIISWNSVI 177
VV N LID Y K G VE+A+ +F EM + ++ +++ +I
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 5e-04
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 70 VSWNSLISGYVQSGKYRKALNLFVELERSEIYADA 104
V++N+LI G ++G+ +AL LF E++ I D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 10/50 (20%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 168 KDIISWNSVIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQ 213
D++++N++I + G +E A + + P+ +Y+ +I+G+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRK----NLVTWNAMITGYAR 345
+V + L+D Y K G+VE A +F + ++ N+ T++ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
N LI Y K G +E+A+ +F EM +K +
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267
++N+++ G RV EAL LF EM+ + + D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263
++NS+++GY ++ EAL LF EM+ K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 66 QPSVVSWNSLISGYVQSGKYRKALNLFVELE 96
+P VV++N+LI G ++G+ +A+ L E+E
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDKDI 170
N LID K G VE+A+ +F EM ++ I
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.76 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.52 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.41 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.2 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.18 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.16 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.15 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.15 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.09 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.08 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.01 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.97 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.94 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.9 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.83 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.83 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.7 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.69 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.62 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.46 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.22 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.07 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.06 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.03 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.98 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.92 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.92 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.9 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.89 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.83 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.65 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.64 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.63 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.63 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.56 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.45 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.43 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.42 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.35 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.3 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.3 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.29 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.27 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.22 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.22 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.2 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.2 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.18 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.14 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.07 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.98 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.85 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.83 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.83 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.81 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.74 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.73 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.73 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.68 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.67 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.42 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.35 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.35 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.34 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.33 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.25 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.11 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.04 | |
| PRK09687 | 280 | putative lyase; Provisional | 96.01 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.99 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.87 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.79 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.56 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.55 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.55 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.35 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.35 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.34 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.29 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.26 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.16 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.13 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.08 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.05 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.01 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.96 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.93 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.81 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.81 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.72 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.54 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.48 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.46 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.45 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.4 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.27 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.26 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.26 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.16 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.01 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.99 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.95 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.92 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.74 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.72 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.63 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.46 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.35 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.29 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.02 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.02 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.8 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.76 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.69 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 92.53 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.46 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.46 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.2 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.06 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.97 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.82 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.81 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.78 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.73 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.68 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.68 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.49 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.43 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.27 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.13 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 90.81 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.4 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.3 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 90.19 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.15 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.96 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.86 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.62 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 89.46 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 89.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.29 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.29 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.1 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 88.75 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.44 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.84 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.52 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.96 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.8 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 86.47 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.42 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 86.27 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 86.17 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.9 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 85.88 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.8 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.41 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.38 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.15 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.91 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.89 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.63 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 84.48 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 84.47 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 84.38 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.36 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 84.32 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 83.39 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 83.36 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 82.97 | |
| cd00280 | 200 | TRFH Telomeric Repeat binding Factor or TTAGGG Rep | 82.79 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.68 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.62 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.39 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.22 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.66 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 81.57 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.22 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 80.81 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 80.75 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.2 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 80.1 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.06 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-79 Score=631.95 Aligned_cols=518 Identities=31% Similarity=0.553 Sum_probs=488.3
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCc-----------------------------------hHHHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLS-----------------------------------NVFVSTALM 45 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~ll 45 (525)
||..+|++++.+|++.|++++|.++|++|.+.|+.| ++.+++.|+
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 456666666666666666666666666666555555 455567888
Q ss_pred HHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHH
Q 048766 46 GFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125 (525)
Q Consensus 46 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 125 (525)
.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+.+.+.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC----CCC--
Q 048766 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNP-- 199 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-- 199 (525)
++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++| ..|
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 234
Q ss_pred ---------------------------------CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 048766 200 ---------------------------------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246 (525)
Q Consensus 200 ---------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (525)
+..+++.++.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g 469 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCC
Confidence 45567778888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 326 (525)
+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+
T Consensus 470 ~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 470 RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999986 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh
Q 048766 327 SLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406 (525)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 406 (525)
.+ .+|..+|++++.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|.+.|. +++|.++|+.|.+.+|+.|+.
T Consensus 549 ~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~-v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGM-VTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred hc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcCh-HHHHHHHHHHHHHHhCCCCch
Confidence 99 9999999999999999999999999999999999 99999999999999999999 999999999999777999999
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
.+|+.++++|++.|++++|.+++++|+..|+..+|.+|+.+|...|+.+.++...+++++++|+++..|..|+++|...|
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCccCCcccEEEecceecccc
Q 048766 487 NWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (525)
+|++|.++.+.|.+.|++++||+||+++.+.+|.|.
T Consensus 706 ~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred ChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 999999999999999999999999999999999984
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=562.54 Aligned_cols=481 Identities=28% Similarity=0.448 Sum_probs=415.1
Q ss_pred chHHHHHHHHHHHHccCCHHHHHHHHhcCCC-----CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHH
Q 048766 36 SNVFVSTALMGFYRKINSLADAHKMFVEIPQ-----PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA 110 (525)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 110 (525)
++..+++.++..|.+.|++++|+++|+.|.. ||..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3444566666666666666666666665532 45566666666666666666666666666666666666666666
Q ss_pred HHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC----CChhhHHHHHHHHHhCCCh
Q 048766 111 LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KDIISWNSVIAASARNGNL 186 (525)
Q Consensus 111 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 186 (525)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+ |+..+|+.++.++.+.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 666666666666666666663 35666666666666666666666666666632 4556666666666666666
Q ss_pred HHHHHHHhcC----CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 187 ELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262 (525)
Q Consensus 187 ~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 262 (525)
+.+.+++..+ ..+|..+++.++.+|++.|++++|.++|++|.++|..+|+.++.+|++.|++++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 6666665544 457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHH
Q 048766 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITG 342 (525)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 342 (525)
+.||..||+.++.+|++.|++++|.+++..+.+.|++|+..+++.++++|++.|++++|.++|++|.++|..+|+.||.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
|++.|+.++|+++|++|.+.| +.||..||+.++.+|.+.|. +++|.++|+.|.+.+|+.|+..+|+.++++|++.|++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~-~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGL-SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 999999999999999999999 99999999999999999999 9999999999988779999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
++|.+++++++..|+..+|..++.+|...|+++.|..+++++++++|++...|..|+.+|.+.|+|++|.+++++|.+.|
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCcccEEEecceecccc
Q 048766 503 LRKEAGCSWIEVENVAAHSS 522 (525)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~ 522 (525)
+.+.||+||+++.+.+|+|.
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred CccCCCeeEEEECCeEEEEc
Confidence 99999999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-70 Score=562.20 Aligned_cols=500 Identities=25% Similarity=0.392 Sum_probs=461.0
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 80 (525)
|+..+|..++.+|.+.+.++.+.+++..+.+.+..+++..+++++..|++.|+++.|.++|++|++||..+||.+|.+|+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~ 163 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHH
Confidence 45556666666666666666666666666666666677777899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (525)
+.|++++|+++|++|...|+.||..||+.++.+|...+++..+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.+
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC----CC-----------------------------------CCc
Q 048766 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PN-----------------------------------PDT 201 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~-----------------------------------~~~ 201 (525)
+|++|.++|..+|+.++.+|++.|++++|+++|.+| .. ||.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 999999999999999999999999999999999998 22 367
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc
Q 048766 202 ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS 281 (525)
Q Consensus 202 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 281 (525)
.+|+.++.+|++.|++++|.++|++|.+||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
+++.+.+++..+.+.|+.++..+++.++++|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|..
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHH
Q 048766 362 VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVW 441 (525)
Q Consensus 362 ~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 441 (525)
+ +.||..||+.++.+|++.|. .+.+.+++..+.+. |+.++..+++.|+++|++.|++++|.++|+++ .||..+|
T Consensus 484 -~-~~pd~~t~~~lL~a~~~~g~-l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~ 557 (857)
T PLN03077 484 -T-LKPNSVTLIAALSACARIGA-LMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSW 557 (857)
T ss_pred -C-CCCCHhHHHHHHHHHhhhch-HHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhH
Confidence 5 89999999999999999999 99999999999887 99999988999999999999999998888887 6888888
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhHHHHHHHHHhhccChhHHHHHHHHHH-HcCCccCC
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLE--GDSDYVYVMLCNLYTSHGNWDVASVMRNFMR-ERGLRKEA 507 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 507 (525)
+.++.+|.+.|+.++|+++|++|.+.+ | |..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 888888888888899999888888755 5 77788888888888888888888888888 67777754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-67 Score=531.32 Aligned_cols=503 Identities=20% Similarity=0.255 Sum_probs=469.5
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCC-CchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGF-LSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY 79 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~ 79 (525)
++...|..++..+.+.|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3566788999999999999999999999999985 578888899999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHH
Q 048766 80 VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (525)
++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc----CCChhhHHHHHHHHHhCCChHHHHHHHhcC------CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC
Q 048766 160 GVFGEMI----DKDIISWNSVIAASARNGNLELAFGFLHRL------PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229 (525)
Q Consensus 160 ~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 229 (525)
++|+.|. .||..+|+.++.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999994 479999999999999999999999999998 258999999999999999999999999999974
Q ss_pred ----CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHH
Q 048766 230 ----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305 (525)
Q Consensus 230 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 305 (525)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcc----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLC----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (525)
+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999995 7899999999999999999999999999999999 99999999999999999
Q ss_pred CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----c-------------------CChHHHHHHHHHh---CCC
Q 048766 382 TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----K-------------------GEVWRAQRMIREL---GFG 435 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~ 435 (525)
.|+ +++|.+++++|.+. |+.||..+|+.++.++.+ + +..++|..+|++| +..
T Consensus 767 ~G~-le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 767 KDD-ADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred CCC-HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 999 99999999999888 999999999999876432 1 2346799999999 899
Q ss_pred CchhHHHHHHHHHhcCCChHHHHHHHHHHHhh-cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCc
Q 048766 436 SYGVVWRALLSASGACSDLDVARISAAEVIKL-EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508 (525)
Q Consensus 436 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 508 (525)
|+..+|..++..+...++.+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|.+.|+.|+-.
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999997777888899888888876543 355788999999987322 368999999999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=491.92 Aligned_cols=459 Identities=16% Similarity=0.225 Sum_probs=430.7
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC----CCcccHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ----PSVVSWNSLI 76 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll 76 (525)
|+..+++.++.+|.+.|.+++|..++..|.. |+..+|+.++.+|++.|+++.|.++|+.|.+ ||..+|+.+|
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4566778899999999999999999998863 9999999999999999999999999999975 8999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHH
Q 048766 77 SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156 (525)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (525)
.+|++.|+++.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|+++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc------CCChhhHHHHHHHHHhCCChHHHHHHHhcC----CCCCcchHHHHHHHHHhcCChHHHHHHHhc
Q 048766 157 DAIGVFGEMI------DKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSS 226 (525)
Q Consensus 157 ~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 226 (525)
+|.++|++|. .||..+|+.++.+|++.|++++|.++|+.| ..|+..+|+.++.+|++.|++++|.++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999994 478999999999999999999999999999 467889999999999999999999999999
Q ss_pred CC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchH
Q 048766 227 MP----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302 (525)
Q Consensus 227 ~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 302 (525)
|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.|+.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 97 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcc----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLC----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
.+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+++.|.+++++|.+.| +.||..+|+.++..
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIgl 798 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 999999999999999999999999986 6899999999999999999999999999999999 99999999999876
Q ss_pred HcC----C-------------------CCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh---
Q 048766 379 CSH----T-------------------DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--- 432 (525)
Q Consensus 379 ~~~----~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 432 (525)
|.+ . +. .+.|..+|++|.+. |+.||..+|+.++.++.+.+....+..+++++
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w-~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKW-TSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccch-HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 532 1 11 35799999999988 99999999999999999999999999999988
Q ss_pred CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 433 GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 433 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+..|+..+|..++.++.+. .++|..++++|.+.+
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 5566788999999998432 468999999999987
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=473.76 Aligned_cols=420 Identities=22% Similarity=0.363 Sum_probs=386.8
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYV 80 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 80 (525)
||..+|+.++.+|++.++++.+.+++..|.+.|+.||+.+++.++.+|++.|++++|.++|++|++||..+||.++.+|+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~ 200 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (525)
+.|++++|+++|++|.+.|+.|+..||+.++.+|.+.|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.+
T Consensus 201 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC----CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCCc
Q 048766 161 VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP----SPNS 232 (525)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~ 232 (525)
+|++|.++|+.+|+.++.+|++.|+.++|+++|++| ..||..+|+.++.+|++.|++++|.+++..+. .+|.
T Consensus 281 vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred HHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 999999999999999999999999999999999998 57899999999999999999999999998876 4888
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (525)
.+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|..+|++|.+.|+.||..+|+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 4688899999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcc
Q 048766 313 SKCGQVEIADSMFRSLC-----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 387 (525)
.+.|.+++|.++|+.|. .|+..+|+.++.+|++.|+.++|.+++++| + ..|+..+|+.++.+|...|+ ++
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~-~~p~~~~~~~Ll~a~~~~g~-~~ 511 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P-FKPTVNMWAALLTACRIHKN-LE 511 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C-CCCCHHHHHHHHHHHHHcCC-cH
Confidence 99999999999999885 478889999999999999999999998876 3 68999999999999999998 99
Q ss_pred hHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 388 KVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.|..+++++. ++.|+ ..+|..|+..|.+.|++++|.+++++|
T Consensus 512 ~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 512 LGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999998886 55664 678999999999999999999999988
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=299.58 Aligned_cols=487 Identities=16% Similarity=0.084 Sum_probs=305.3
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhc
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQS 82 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 82 (525)
+..+...+.+.|++++|.++|+.+.+.. +.+...+..+...+...|++++|.+.|+.+.. .+...+..++..+.+.
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 3334444444444444444444444332 22333444444444444444444444443332 1112233344445555
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHH
Q 048766 83 GKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVF 162 (525)
Q Consensus 83 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (525)
|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555555442 23345556666666666666666666666665543 334445555666666666666666666
Q ss_pred hhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcc
Q 048766 163 GEMID---KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSS 233 (525)
Q Consensus 163 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~ 233 (525)
+++.. .+..++..+...+.+.|+.++|...++++ .+.+...+..++..+...|++++|..+++.+.+ .+..
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 66633 24455666666666666666666666665 223344556666666777777777777666542 3445
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (525)
.|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..++..+.
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 66677777777777777777777766542 3345566666667777777777777777776654 445566666777777
Q ss_pred cCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHH
Q 048766 314 KCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
..|+++.|.++++.+. +.+...+..+...+...|++++|++.|+++.. ..|+..++..+...+...|+ +++|.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~-~~~A~ 756 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGN-TAEAV 756 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCC-HHHHH
Confidence 7777777777777665 23455666677777777777777777777777 45555666677777777777 77787
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+.++.+.+. .+.++..+..++..|.+.|++++|.+.|+++ ..++++..+..++..+...|+ ++|+..++++++..
T Consensus 757 ~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 777777653 3445667777777888888888888888776 333446667777777777777 77888888888777
Q ss_pred CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 469 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
|+++..+..++.++...|++++|..+++++.+.++.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777777777888888888888888888888776653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=299.64 Aligned_cols=486 Identities=11% Similarity=0.030 Sum_probs=424.2
Q ss_pred chHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHH
Q 048766 4 YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYV 80 (525)
Q Consensus 4 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~ 80 (525)
..+..+...+...|++++|...+..+.+.. +.+......++..+.+.|++++|.++++.+.. ++...|..+...+.
T Consensus 398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 476 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL 476 (899)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 456677778889999999999999998876 44455667788899999999999999998865 46678999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHH
Q 048766 81 QSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIG 160 (525)
Q Consensus 81 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 160 (525)
..|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 3456677888888999999999999999998875 5577889999999999999999999
Q ss_pred HHhhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 048766 161 VFGEMID---KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PN 231 (525)
Q Consensus 161 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 231 (525)
.++++.. .+...+..++..+.+.|++++|..+++.+ .+.+...|..++.++...|++++|...|+.+.+ .+
T Consensus 555 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 634 (899)
T TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634 (899)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999854 25567888999999999999999999998 345677899999999999999999999998763 45
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 048766 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311 (525)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (525)
...+..+..++.+.|++++|..+|+++.... +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 712 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDL 712 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHH
Confidence 5678889999999999999999999998763 5567889999999999999999999999998887 5677788889999
Q ss_pred HHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH
Q 048766 312 YSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a 389 (525)
+...|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...+...|+ +++|
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~-~~~A 789 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKD-YDKA 789 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcC-HHHH
Confidence 999999999999999986 4555778888999999999999999999999843 4467888888999999999 9999
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
.++|+++.+. .++++..+..++..+...|+ .+|+..++++ ...| ++..+..++..+...|++++|...++++++.
T Consensus 790 ~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 790 IKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999864 35578889999999999999 8899999987 3333 4567778889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 468 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+|.++.++..++.++.+.|++++|.+++++|++
T Consensus 867 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 867 APEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-25 Score=237.37 Aligned_cols=486 Identities=13% Similarity=0.079 Sum_probs=273.5
Q ss_pred HHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccH--------------
Q 048766 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSW-------------- 72 (525)
Q Consensus 9 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~-------------- 72 (525)
..+.+...++.+.|.+.+.++.... +.++.++..++..+.+.|+.++|.+.++++.+ |+...+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 3344455566666666666665554 44566666666666666666666666666554 322211
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhh-HHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 73 ---NSLISGYVQSGKYRKALNLFVELERSEIYADAYS-FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 73 ---~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
......+...|++++|++.|+++.+.+ +|+... ...+.......|+.++|...++++.+.. +.+...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112224555666666666666665432 222211 1111111223466666666666666553 3345555566666
Q ss_pred HHhcCCHHHHHHHHhhccCCCh-----------------------hhH--------------------------------
Q 048766 149 YGKCGSVEDAIGVFGEMIDKDI-----------------------ISW-------------------------------- 173 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~-----------------------~~~-------------------------------- 173 (525)
+...|+.++|+..++++..... ..+
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 6666666666666655422100 000
Q ss_pred --HHHHHHHHhCCChHHHHHHHhcC--C-CCCcchHHHHHHHHHhcCChHHHHHHHhcCCC--CCcc---cHH-------
Q 048766 174 --NSVIAASARNGNLELAFGFLHRL--P-NPDTISYNEVINGIAQFGDIEDAIMILSSMPS--PNSS---SWN------- 236 (525)
Q Consensus 174 --~~l~~~~~~~~~~~~a~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~------- 236 (525)
......+...|++++|+..|++. . +.+...+..+...+.+.|++++|+..|++..+ |+.. .|.
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 01123345566666666666665 2 23455666666666667777777766666543 2211 111
Q ss_pred -----HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHH-----
Q 048766 237 -----SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS----- 306 (525)
Q Consensus 237 -----~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 306 (525)
.....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|+..|+++.+.. +.+...+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 11234556666667777666666542 2344455556666666666666666666666543 22222222
Q ss_pred -------------------------------------HHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhc
Q 048766 307 -------------------------------------ALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARN 346 (525)
Q Consensus 307 -------------------------------------~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 346 (525)
.+...+...|++++|.+.+++.. +.+...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 23344556677777777777765 22445666677777777
Q ss_pred CChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh-------------------------
Q 048766 347 GDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY------------------------- 400 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~------------------------- 400 (525)
|++++|+..++++.+ ..|+ ...+..+...+...++ .++|...++.+....
T Consensus 509 G~~~~A~~~l~~al~---~~P~~~~~~~a~al~l~~~~~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 509 GQRSQADALMRRLAQ---QKPNDPEQVYAYGLYLSGSDR-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred CCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 888888888877776 3443 2222222222333343 444444444321100
Q ss_pred -------------CCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 401 -------------GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 401 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
..+.++..+..+...|.+.|++++|+..++++ ...| +...+..++..+...|++++|++.+++++
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 11234445566777777777777777777776 3333 35666777777777788888888888777
Q ss_pred hhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 466 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+..|+++..+..++.++...|++++|.++++++.+...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 77777777777777777778888888888877776543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-24 Score=231.19 Aligned_cols=479 Identities=12% Similarity=0.056 Sum_probs=325.2
Q ss_pred HHHHHhccCchhhhhHHHHHHHHhCCCchHHHHH-HHHHHHHccCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCC
Q 048766 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVST-ALMGFYRKINSLADAHKMFVEIPQ--P-SVVSWNSLISGYVQSGK 84 (525)
Q Consensus 9 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~ 84 (525)
+.+.+.+.|++++|.+.++.+.+.+ +|+..... .........|+.++|++.|+++.+ | +...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 3445777888888888888887665 44432211 112222345788888888887765 3 34456677777778888
Q ss_pred hHHHHHHHHHHHhcCC------------------C--------------CCHhhH---------------------HHHH
Q 048766 85 YRKALNLFVELERSEI------------------Y--------------ADAYSF---------------------TSAL 111 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~ll 111 (525)
.++|++.++++.+... . |+...+ ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 8888888887654210 0 110000 0112
Q ss_pred HHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC--CCh---hhHH------------
Q 048766 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDI---ISWN------------ 174 (525)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~------------ 174 (525)
..+...|++++|...|++..+.. +.+..++..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 23455688888888888887764 34667788888888888888888888887754 221 1111
Q ss_pred HHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC--CC-cccHHHH----------
Q 048766 175 SVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS--PN-SSSWNSI---------- 238 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l---------- 238 (525)
.....+.+.|++++|+..|+++ .+.+...+..+...+...|++++|++.|+++.+ |+ ...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 1234566788888888888877 223445666777888888888888888877663 22 2223222
Q ss_pred --------------------------------HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHH
Q 048766 239 --------------------------------LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286 (525)
Q Consensus 239 --------------------------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 286 (525)
...+...|++++|++.|++..+.. +-+...+..+...+...|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 233445677777777777766542 22445555666667777777777
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC----CHh---------HHHHHHHHHHhcCChhHHH
Q 048766 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK----NLV---------TWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~l~~~~~~~~~~~~a~ 353 (525)
...++.+.+.. +.+...+..+...+...++.++|...++.+... +.. .+..+...+...|+.++|+
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 77777766544 333444444444556667777777777766421 111 1223455677788888888
Q ss_pred HHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
.+++. .+++...+..+...+...|+ +++|++.|+++.+. -+.++..+..++..|...|++++|++.++.+
T Consensus 594 ~~l~~------~p~~~~~~~~La~~~~~~g~-~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 594 ALLRQ------QPPSTRIDLTLADWAQQRGD-YAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHh------CCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88772 24455667778888999999 99999999999863 2336788999999999999999999999987
Q ss_pred CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh------hHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 433 GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD------YVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 433 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
...|+ ...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|+..|++...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444 55667788888999999999999999999876544 3566789999999999999999998864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-25 Score=202.71 Aligned_cols=444 Identities=14% Similarity=0.089 Sum_probs=358.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 41 STALMGFYRKINSLADAHKMFVEIPQ--PS-VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 41 ~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
...|..-.-+.|++++|.+.-..+-+ |+ ....-.+-..+.+..+.+....--....+. .+--..+|..+.+.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 34566667788999999988776654 22 222222233455555666555443333332 233567899999999999
Q ss_pred CChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC--CChh-hHHHHHHHHHhCCChHHHHHHHh
Q 048766 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDII-SWNSVIAASARNGNLELAFGFLH 194 (525)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 194 (525)
|+++.|...++.+++.. +..+..|..+..++...|+.+.|...|.+..+ |+.. ..+.+...+-..|+.++|...|.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999998864 34578899999999999999999999988866 4333 23345555666899999998888
Q ss_pred cC--CCC-CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CH
Q 048766 195 RL--PNP-DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS---SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM-DE 267 (525)
Q Consensus 195 ~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~ 267 (525)
+. ..| -...|..|...+-..|+...|+..|++..+-|+ ..|-.|...|...+.+++|+..|.+.... .| ..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcch
Confidence 87 233 345788899999999999999999999885333 46888999999999999999999888765 45 45
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHH
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYA 344 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 344 (525)
..+..+...|..+|.++.|+..|++.++.. +.-+..|+.+..++...|++.+|...+.+.. .....+.+.|...|.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 677788888999999999999999999876 4457789999999999999999999999986 334568899999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCCh
Q 048766 345 RNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 422 (525)
..|.++.|..+|....+ +.|. ...++.|...|.+.|+ +++|+..|++.. .++|+ ...|+.++..|...|+.
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgn-l~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGN-LDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhccc-HHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999 8887 5778899999999999 999999999998 77887 67899999999999999
Q ss_pred HHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 423 WRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 423 ~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
..|++.+.+. .+.|. ......|...|...|+..+|+..|+.+++++||.|.++..++.++.--.+|.+--+-++
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 9999999987 66776 56788899999999999999999999999999999999999999877776665433333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-23 Score=209.24 Aligned_cols=471 Identities=10% Similarity=-0.014 Sum_probs=299.5
Q ss_pred CchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChHHHHHHHHH
Q 048766 17 GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGKYRKALNLFVE 94 (525)
Q Consensus 17 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 94 (525)
|++++|...|...++.. |-++.++..|...|...|++++|+..+++..+ |+-..|..++..+ +++.+|..++++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 66666666666666665 44466666666666666666666666666554 3222222222211 455555555555
Q ss_pred HHhcC--------------------------------------CCCCHhhHHHH-HHHHcccCChHHHHHHHHHHHHccc
Q 048766 95 LERSE--------------------------------------IYADAYSFTSA-LAACGQLGSLQLGMAIHSKIVKYSL 135 (525)
Q Consensus 95 m~~~~--------------------------------------~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~ 135 (525)
+.+.. ..|+....... ...|...|++++|..++.++.+.+
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~- 212 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN- 212 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-
Confidence 54421 11223223333 556666777777777777777765
Q ss_pred CCCcchhhHHHHHHHh-cCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC-----CCcch------
Q 048766 136 ERGVVIANCLIDMYGK-CGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-----PDTIS------ 203 (525)
Q Consensus 136 ~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~------ 203 (525)
+.+......|..+|.. .++ +++..+++...+.+...+..++..|.+.|+.++|...+.++.. |...+
T Consensus 213 pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~ 291 (987)
T PRK09782 213 TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS 291 (987)
T ss_pred CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH
Confidence 3344445556666666 355 6666666654445677777888888888888888888887711 10000
Q ss_pred ------------------------HHHHHHHHHhc---------------------------------------------
Q 048766 204 ------------------------YNEVINGIAQF--------------------------------------------- 214 (525)
Q Consensus 204 ------------------------~~~l~~~~~~~--------------------------------------------- 214 (525)
...++..+.+.
T Consensus 292 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~ 371 (987)
T PRK09782 292 KYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ 371 (987)
T ss_pred hccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc
Confidence 00112223333
Q ss_pred ------------------CChHHHHHHHhcCCC--CC----cccHHHHHHHHHhcCC---hhHHHHH-------------
Q 048766 215 ------------------GDIEDAIMILSSMPS--PN----SSSWNSILTGYVNRNR---VPEALHL------------- 254 (525)
Q Consensus 215 ------------------~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~---~~~a~~~------------- 254 (525)
|+.++|.++|+.... ++ ...-.-++..|.+.+. ..++..+
T Consensus 372 ~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 372 EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 344444444443321 11 1112233444444333 1122111
Q ss_pred ---------HHHHhhC-CC-CC--CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHH
Q 048766 255 ---------FGEMQSK-DV-PM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321 (525)
Q Consensus 255 ---------~~~m~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 321 (525)
.+..... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHH
Confidence 1111000 01 22 34444444444444 66667777666666554 3333344455556789999999
Q ss_pred HHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 322 DSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 322 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
...|+++. .++...+..+...+.+.|+.++|...+++..+ ..|+. ..+..+.......|+ +++|...+++..
T Consensus 529 i~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l~~~Gr-~~eAl~~~~~AL- 603 (987)
T PRK09782 529 LAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQRYIPGQ-PELALNDLTRSL- 603 (987)
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-
Confidence 99998775 34455566777888899999999999999988 44543 333344445556688 999999999998
Q ss_pred hhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.+.|+...+..++.++.+.|++++|+..+++. ...|+ ...+..+..++...|++++|+..++++++..|+++.++.
T Consensus 604 --~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 604 --NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred --HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44778888999999999999999999999987 44555 567788888999999999999999999999999999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++.++...|++++|+..+++..+..+
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-21 Score=198.41 Aligned_cols=484 Identities=11% Similarity=0.009 Sum_probs=313.8
Q ss_pred chHHHHHHHHhccCchhhhhHHHHHHHHhCCCch--HHHHHHHHHH--HHccCCHHHHHHHHhcCCC--C-CcccHHHHH
Q 048766 4 YVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSN--VFVSTALMGF--YRKINSLADAHKMFVEIPQ--P-SVVSWNSLI 76 (525)
Q Consensus 4 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll 76 (525)
.+|..||-++...+-.- |..+.....+.++.+- -.++-.+..+ +...|++++|+..|+...+ | +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA 85 (987)
T PRK09782 7 IGWSGLLLTSLLSTSAL-ADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLA 85 (987)
T ss_pred cCchHHHHHHHhccHhh-hhhcccccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35566666665555443 4444445555655442 1223333333 3445999999999999876 3 456788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHH-----------
Q 048766 77 SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL----------- 145 (525)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 145 (525)
..|...|++++|...+++..+. .|+...|..++..+ ++.++|..+++++.+.. +-+..++..+
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~ 159 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALR 159 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhh
Confidence 9999999999999999999984 56555555544333 77778888888777653 2223333322
Q ss_pred -----------------------------HHHHHhcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHh-CCChHHHHHH
Q 048766 146 -----------------------------IDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASAR-NGNLELAFGF 192 (525)
Q Consensus 146 -----------------------------~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~a~~~ 192 (525)
.+.|.+.|++++|+.++.++.+. +......+..+|.+ .++ +++..+
T Consensus 160 y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al 238 (987)
T PRK09782 160 LAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL 238 (987)
T ss_pred hhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH
Confidence 44455555555565555555442 22223344445554 244 555555
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC-----CCcccH------------------------------HH
Q 048766 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-----PNSSSW------------------------------NS 237 (525)
Q Consensus 193 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~------------------------------~~ 237 (525)
++...+.+......++..+.+.|+.++|.++++++.. |...+| -.
T Consensus 239 ~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (987)
T PRK09782 239 QSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGA 318 (987)
T ss_pred hchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHH
Confidence 5443345666777888889999999999988887751 111110 00
Q ss_pred HHHHH---------------------------------------------------------------HhcCChhHHHHH
Q 048766 238 ILTGY---------------------------------------------------------------VNRNRVPEALHL 254 (525)
Q Consensus 238 l~~~~---------------------------------------------------------------~~~~~~~~a~~~ 254 (525)
++..+ .+.|+.++|.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~ 398 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADL 398 (987)
T ss_pred HHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 01112 233445555555
Q ss_pred HHHHhhC-C-CCCCHHHHHHHHHHhccccc---hHHHHHH----------------------HHHHHHh-CC-Cc--hHH
Q 048766 255 FGEMQSK-D-VPMDEYTFSTMLSGIAGLSA---LTWGMLI----------------------HSCVIKQ-GL-DA--SIV 303 (525)
Q Consensus 255 ~~~m~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~ 303 (525)
|+..... + ..++.....-++..+.+.+. ..++..+ +...... +. ++ +..
T Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~ 478 (987)
T PRK09782 399 LLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAA 478 (987)
T ss_pred HHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHH
Confidence 5554441 1 12233333355555555544 2222111 1111111 11 33 566
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (525)
.+..+..++.. ++.++|...+.+.. .|+......+...+...|++++|+..|+++.. ..|+...+..+...+..
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~a~~~la~all~ 554 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISL---HDMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHH
Confidence 67777777766 78888888777665 34433333334445689999999999999866 45555566677778888
Q ss_pred CCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHH
Q 048766 382 TDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARI 459 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 459 (525)
.|+ .++|.++++...+. .|+ ...+..+.....+.|++++|...+++. ...|+...+..+...+.+.|++++|+.
T Consensus 555 ~Gd-~~eA~~~l~qAL~l---~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 555 AGN-GAARDRWLQQAEQR---GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred CCC-HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 898 99999999998754 343 333444444555679999999999987 666788889999999999999999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 460 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++++++.+|+++.++..++.++...|++++|+..+++..+..+
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999988755
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=190.17 Aligned_cols=421 Identities=14% Similarity=0.145 Sum_probs=347.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (525)
...+..-..+.|++.+|.+.-...-..+ +.+......+-..+....+.+...+.-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556678899999998876655443 2233333334444666666666655544444432 4457799999999999
Q ss_pred cCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHHHhcC--CCCCcc-hHHHHHHHHHhcCChHHHHHHHh
Q 048766 152 CGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHRL--PNPDTI-SYNEVINGIAQFGDIEDAIMILS 225 (525)
Q Consensus 152 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 225 (525)
.|++++|+..++.+++. .+..|.-+..++...|+.+.|.+.|.+. .+|+.. ....+...+...|++.+|...+.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999663 5678999999999999999999999988 444433 33445666677899999999998
Q ss_pred cCCC--CC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCch
Q 048766 226 SMPS--PN-SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD-EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301 (525)
Q Consensus 226 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 301 (525)
+..+ |. ...|+.|...+..+|+...|++.|++.... .|+ ...|..|...|...+.++.|...|.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 8764 43 357999999999999999999999999875 443 5678888899999999999999998887764 455
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCC-HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC--RKN-LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLA 377 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 377 (525)
..++..+...|..+|.++.|+..+++.. +|+ ...|+.|..++...|++.+|.+.|.+... ..|+ ....+.|..
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgn 362 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGN 362 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHH
Confidence 6677888888999999999999999987 343 56899999999999999999999999998 7776 677889999
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCCh
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDL 454 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~ 454 (525)
.+...|. ++.|..+|.... .+.|. ...++.|...|..+|++++|+..+++. .+.|. ...+..++..|...|+.
T Consensus 363 i~~E~~~-~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGK-IEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhcc-chHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 9999999 999999999887 45665 567899999999999999999999997 77888 56889999999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+.|++.+.+++..+|.-.+++..|+.+|..+|+..+|++-|+...+..+.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999998876554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-22 Score=197.51 Aligned_cols=419 Identities=11% Similarity=-0.008 Sum_probs=300.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK 151 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (525)
+......+...|++++|+..|++..+ +.|+...|..+..++...|++++|...+...++.+ +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677888999999999999887 56788888888889999999999999999988864 4456788888999999
Q ss_pred cCCHHHHHHHHhhccCCC---hhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 048766 152 CGSVEDAIGVFGEMIDKD---IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228 (525)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 228 (525)
.|++++|+.-|..+...+ ......++..+........+...++.- +++...+..+.. +...........-+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999988776653321 111112222222211123333333332 222222222222 222111111222122211
Q ss_pred CCCc---ccHHHHHHHH---HhcCChhHHHHHHHHHhhCC-CCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCc
Q 048766 229 SPNS---SSWNSILTGY---VNRNRVPEALHLFGEMQSKD-VPM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300 (525)
Q Consensus 229 ~~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 300 (525)
+.+. ..+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++...+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 1111 1122221111 23478999999999998765 233 34567777788889999999999999998875 44
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVL 376 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 376 (525)
....+..+..++...|++++|...|+.+. +.+...|..+...+...|++++|+..|++..+ ..|+ ...+..+.
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la 440 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLG 440 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHH
Confidence 56678888999999999999999999886 34577899999999999999999999999998 5664 66677788
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch-hH-------HHHHHHH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG-VV-------WRALLSA 447 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~-------~~~l~~~ 447 (525)
..+...|+ +++|+..+++..+. .+.++..+..++..+...|++++|++.|++. ...|+. .. +......
T Consensus 441 ~~~~~~g~-~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 441 VTQYKEGS-IASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHCCC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 88899999 99999999999853 3345788999999999999999999999986 333321 11 1112223
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+...|++++|+++++++++++|++..++..++.++.+.|++++|+.+|++..+..
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 3446999999999999999999999999999999999999999999999987653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=184.46 Aligned_cols=297 Identities=11% Similarity=0.060 Sum_probs=208.7
Q ss_pred HhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHhccccchHH
Q 048766 212 AQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD---EYTFSTMLSGIAGLSALTW 285 (525)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 285 (525)
...|++++|...|+++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344444445554444442 1223455566666666666666666666655422111 1345555666666666666
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC--------HhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN--------LVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 286 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
|..++..+.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+ ...+..++..+...|++++|+..++
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666543 3455666667777777777777777777664211 1234567777888999999999999
Q ss_pred HHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh-C
Q 048766 358 QLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL-G 433 (525)
Q Consensus 358 ~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 433 (525)
++.+ ..|+ ...+..+...+...|+ +++|.++++++.+. .|+ ...+..++.+|.+.|++++|...++++ .
T Consensus 205 ~al~---~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 205 KALA---ADPQCVRASILLGDLALAQGD-YAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHh---HCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9887 4454 5567778888888998 99999999998754 343 456788899999999999999999987 5
Q ss_pred CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh---ccChhHHHHHHHHHHHcCCccCCccc
Q 048766 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS---HGNWDVASVMRNFMRERGLRKEAGCS 510 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 510 (525)
..|+...+..++..+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..+++++.+.++.++|.+.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 567766778888999999999999999999999999665 45544544442 56999999999999999999999866
Q ss_pred EEEecce
Q 048766 511 WIEVENV 517 (525)
Q Consensus 511 ~~~~~~~ 517 (525)
...++..
T Consensus 357 c~~cg~~ 363 (389)
T PRK11788 357 CRNCGFT 363 (389)
T ss_pred CCCCCCC
Confidence 5544443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-20 Score=190.12 Aligned_cols=401 Identities=9% Similarity=0.031 Sum_probs=204.4
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 113 (525)
++....-.+.+....|+.++|++++..... .+...+..+...+...|++++|.++|++..+.. +.+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444444455555566666666666665543 222235556666666666666666666655531 2234445555555
Q ss_pred HcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHH
Q 048766 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFL 193 (525)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 193 (525)
+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.++
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P----------------------- 147 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP----------------------- 147 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------------
Confidence 566666666666666665542 33334 55555666666666666666666543211
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC-CCc------ccHHHHHHHHHh-----cCCh---hHHHHHHHHH
Q 048766 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS-PNS------SSWNSILTGYVN-----RNRV---PEALHLFGEM 258 (525)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~m 258 (525)
.+...+..+..++...+..+.|...++.... |+. .....++..... .+++ ++|++.++.+
T Consensus 148 -----~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 148 -----QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred -----CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 1122223333334444444444444444332 110 011112222111 1122 4455555555
Q ss_pred hhC-CCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC---H
Q 048766 259 QSK-DVPMDEY-TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN---L 333 (525)
Q Consensus 259 ~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~ 333 (525)
.+. ...|+.. .+.. .....+.++...|++++|+..|+.+.+.+ +
T Consensus 223 l~~~~~~p~~~~~~~~-------------------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P 271 (765)
T PRK10049 223 EALWHDNPDATADYQR-------------------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIP 271 (765)
T ss_pred HhhcccCCccchHHHH-------------------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC
Confidence 532 1112111 1100 00000112233345555555555544211 1
Q ss_pred h-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC------
Q 048766 334 V-TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG------ 401 (525)
Q Consensus 334 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~------ 401 (525)
. .-..+..+|...|++++|+..|+++.+. .|. ......+..++...|+ +++|.++++.+.....
T Consensus 272 ~~a~~~la~~yl~~g~~e~A~~~l~~~l~~---~p~~~~~~~~~~~~L~~a~~~~g~-~~eA~~~l~~~~~~~P~~~~~~ 347 (765)
T PRK10049 272 PWAQRWVASAYLKLHQPEKAQSILTELFYH---PETIADLSDEELADLFYSLLESEN-YPGALTVTAHTINNSPPFLRLY 347 (765)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhc---CCCCCCCChHHHHHHHHHHHhccc-HHHHHHHHHHHhhcCCceEeec
Confidence 0 1111344455555555555555555442 221 1223334444555555 5555555555543200
Q ss_pred ----CCCC---hhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 402 ----IKPT---VEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 402 ----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
-.|+ ...+..++..+...|++++|++.++++ . .+.+...+..++..+...|++++|++.++++++.+|+++
T Consensus 348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 0122 123445666777778888888888776 2 233355667777777778888888888888888888777
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..+..++..+...|++++|..+++++.+..+
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 8777788888888888888888877776543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-19 Score=180.17 Aligned_cols=421 Identities=10% Similarity=-0.031 Sum_probs=298.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
.+......|.+.|++++|+..|++... |+...|..+..++...|++++|++.++...+.+ +.+...+..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 345667778888999999999998765 777788888899999999999999999998753 23466788888899999
Q ss_pred CChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCC
Q 048766 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197 (525)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 197 (525)
|++++|...+......+. .+......++..+........+...++.-. .+...+..+.. +...........-+....
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999988876655431 222112222222222111233333333221 22233333322 222222222222222221
Q ss_pred CCC---cchHHHHHHHH---HhcCChHHHHHHHhcCCCC------CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 048766 198 NPD---TISYNEVINGI---AQFGDIEDAIMILSSMPSP------NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265 (525)
Q Consensus 198 ~~~---~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 265 (525)
+.+ ...+..+...+ ...+++++|.+.|+...+. ....|..+...+...|++++|+..|++..+.. +-
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 111 11122221111 2346888999999877632 33467888888999999999999999988752 23
Q ss_pred CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHH
Q 048766 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITG 342 (525)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 342 (525)
....|..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++.. +.+...+..+...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 45678888888999999999999999998875 5567888899999999999999999999986 3356678888899
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh-h-------HHHHHH
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV-E-------HCCSMI 413 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~ 413 (525)
+.+.|++++|+..+++..+ ..|+ ...++.+...+...|+ +++|++.|+...+. .|+. . .+....
T Consensus 443 ~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 9999999999999999988 4564 6788888899999999 99999999998743 3421 1 112222
Q ss_pred HHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 414 RLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
..+...|++++|.+.+++. ...|+ ...+..++..+.+.|++++|+..|+++.++.+....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3344579999999999986 44555 456788999999999999999999999999875443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-19 Score=181.31 Aligned_cols=352 Identities=9% Similarity=0.010 Sum_probs=181.0
Q ss_pred ccCCHHHHHHHHhcCCC------CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHH
Q 048766 50 KINSLADAHKMFVEIPQ------PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLG 123 (525)
Q Consensus 50 ~~~~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 123 (525)
+..+|+..--.|...++ .+..-...++..+.++|+++.|..+++...... +-+...+..++.+....|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 44555555555555543 233344455666667777777777777766543 22334444455555566777777
Q ss_pred HHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcch
Q 048766 124 MAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS 203 (525)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 203 (525)
...++.+.+.. +.+...+..+...+...|++++|...+++....++ .+...
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P----------------------------~~~~a 146 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS----------------------------GNSQI 146 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------------CcHHH
Confidence 77777776653 33455566666666666666666666666543111 11222
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc
Q 048766 204 YNEVINGIAQFGDIEDAIMILSSMP--SPNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280 (525)
Q Consensus 204 ~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 280 (525)
+..++..+...|++++|...++.+. .|+. ..+..+ ..+...|++++|...++.+......++...+..+..++...
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 2333333333333333333333221 1111 122222 23455566666666666554442222222222233334444
Q ss_pred cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhH----HHHHH
Q 048766 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTK----VIELF 356 (525)
Q Consensus 281 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~ 356 (525)
|++++|...+..+.+.. +. +...+..+...+...|++++ |+..+
T Consensus 226 g~~~eA~~~~~~al~~~-p~-------------------------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 226 GKYQEAIQTGESALARG-LD-------------------------------GAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred CCHHHHHHHHHHHHhcC-CC-------------------------------CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 44444444444444332 22 33444555555555555553 56666
Q ss_pred HHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-C
Q 048766 357 EQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-G 433 (525)
Q Consensus 357 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 433 (525)
+++.+ ..|+ ...+..+...+...|+ +++|...++++.+. .| ++..+..++.+|.+.|++++|+..++++ .
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~-~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQ-NEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66665 3443 4455555666666666 66666666666532 33 3444555666666666666666666655 3
Q ss_pred CCCchhH-HHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 434 FGSYGVV-WRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 434 ~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
..|+... +..+..++...|++++|+..|+++++..|++
T Consensus 347 ~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 347 EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 3344322 2233455566666666666666666666654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-19 Score=167.99 Aligned_cols=433 Identities=14% Similarity=0.091 Sum_probs=255.3
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhH
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIY--ADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (525)
.|+...+.|...|.-.|++..++.+...+...... .-...|-.+.+++-..|++++|...|.+..+.........+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 45566666666667777777777777666553210 1233466666777777777777777776666532111333445
Q ss_pred HHHHHHhcCCHHHHHHHHhhccC--C-ChhhHHHHHHHHHhCC----ChHHHHHHHhcC---CCCCcchHHHHHHHHHhc
Q 048766 145 LIDMYGKCGSVEDAIGVFGEMID--K-DIISWNSVIAASARNG----NLELAFGFLHRL---PNPDTISYNEVINGIAQF 214 (525)
Q Consensus 145 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~ 214 (525)
|...+.+.|+++.+...|+.+.+ | +..+...+...|...+ ..+.|..++.+. ...|...|..+...+...
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 66777777777777777777744 2 3344445555555543 345566666555 223445555555555443
Q ss_pred CCh------HHHHHHHhcCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCH------HHHHHHHHHhc
Q 048766 215 GDI------EDAIMILSSMP-SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSK---DVPMDE------YTFSTMLSGIA 278 (525)
Q Consensus 215 ~~~------~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~l~~~~~ 278 (525)
.-+ ..|..++.... .+.+...|.+...+...|+++.|...|+..... ...+|. .+--.+.....
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 322 22332222221 245556777777777777777777777776554 112222 22233445555
Q ss_pred cccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHH
Q 048766 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 279 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
..++++.|...|..+.+.. |.-+..|..++.+....++..+|...+..+. ..|+..+..+...+.+...+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 6667777777777777654 3334444444433334456666766666664 34555666666666666666666666
Q ss_pred HHHHhhCCCCCCCHhHHHHHHHHHcC------------CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 356 FEQLKTVRDLQPDSVTFLNVLAACSH------------TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~l~~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
|....+.-...+|..+...|...|.. .+. .++|+++|.++.+. -+-|...-+-++-.+...|++.
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~-~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH-QEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH-HHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCch
Confidence 65555433233444444444433321 112 45666666666642 2335666666777777788888
Q ss_pred HHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 424 RAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 424 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
+|..+|... .......+|..++..|..+|+|..|+++|+..++.. -+++.+...|++++.+.|++.+|.+.+....
T Consensus 664 ~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 664 EARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888888776 222345677777888888888888888888777754 3566777788888888888888877776665
Q ss_pred HcCC
Q 048766 500 ERGL 503 (525)
Q Consensus 500 ~~~~ 503 (525)
...+
T Consensus 744 ~~~p 747 (1018)
T KOG2002|consen 744 HLAP 747 (1018)
T ss_pred HhCC
Confidence 5443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-19 Score=177.65 Aligned_cols=323 Identities=7% Similarity=-0.029 Sum_probs=250.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhc
Q 048766 172 SWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNR 245 (525)
Q Consensus 172 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 245 (525)
....++..+.+.|++++|..+++.. .+.+......++.+....|++++|...|+++.+ .+...+..+...+.+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3445566677777777777777666 223344555566666677888888888877763 3445677778888888
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHH
Q 048766 246 NRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325 (525)
Q Consensus 246 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 325 (525)
|++++|...++++.... +.+...+..+..++...|++++|...+..+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999998888752 345667777888888899999999988887766533 33333333 3477889999999999
Q ss_pred HhccCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcch----HHHHHHHh
Q 048766 326 RSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDK----VSEYFESM 396 (525)
Q Consensus 326 ~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~----a~~~~~~~ 396 (525)
+.+.+. +...+..++..+...|++++|+..++++.+ ..| +...+..+...+...|+ +++ |...++++
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~-~~eA~~~A~~~~~~A 276 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGR-SREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHH
Confidence 887632 233445556788899999999999999998 455 46777788888999998 885 89999998
Q ss_pred hhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 397 TKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 397 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
.+ +.| +...+..++..+.+.|++++|+..+++. ...|+ ...+..+...+.+.|++++|+..++++++..|+++.
T Consensus 277 l~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred Hh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 85 345 5778899999999999999999999987 44444 556777889999999999999999999999998887
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.+..++.++...|++++|...|+++.+..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7777899999999999999999999887654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-18 Score=176.70 Aligned_cols=414 Identities=8% Similarity=0.003 Sum_probs=278.2
Q ss_pred hHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHh
Q 048766 5 VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQ 81 (525)
Q Consensus 5 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 81 (525)
...-.+.+....|+.++|.+++....... +.+...+..+...+...|++++|.++|++... .+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34456778889999999999999988744 56666789999999999999999999999654 445667788888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHH
Q 048766 82 SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161 (525)
Q Consensus 82 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 161 (525)
.|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..+.|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998852 33455 8888888899999999999999999975 44566677788888889999999999
Q ss_pred HhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh---HHHHHHHhcCCC-----CCcc
Q 048766 162 FGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDI---EDAIMILSSMPS-----PNSS 233 (525)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~-----~~~~ 233 (525)
++.... ++.....+ . ...+...+.- .+.......+++ ++|...++.+.+ |+..
T Consensus 173 l~~~~~-~p~~~~~l-~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 173 IDDANL-TPAEKRDL-E-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHhCCC-CHHHHHHH-H-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 988765 22110000 0 0000000000 000000111222 555555555441 2221
Q ss_pred c-HH----HHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCc---hHHH
Q 048766 234 S-WN----SILTGYVNRNRVPEALHLFGEMQSKDVP-MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA---SIVV 304 (525)
Q Consensus 234 ~-~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 304 (525)
. +. ..+..+...|++++|...|+.+.+.+.+ |+. ....+..++...|++++|...++.+.+..... ....
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 1 11 1133456778899999999988876522 222 11223445556666666666666554432110 0122
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCC----------CCCCCH---hH
Q 048766 305 ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR----------DLQPDS---VT 371 (525)
Q Consensus 305 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~p~~---~~ 371 (525)
.. .+..++...|++++|+.+++++.... ...|+. ..
T Consensus 313 ~~-------------------------------~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 313 LA-------------------------------DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HH-------------------------------HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 22 33334445555555555555554421 012332 24
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHh
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASG 449 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~ 449 (525)
+..+...+...|+ +++|+++++++... .+.++..+..++..+...|++++|++.+++. ...|+ ...+...+..+.
T Consensus 362 ~~~~a~~l~~~g~-~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSND-LPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 4566677888888 99999999998753 3446788889999999999999999999987 55566 556667777888
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
..|++++|+..++++++..|+++.+..
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999998886644
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.9e-19 Score=167.36 Aligned_cols=472 Identities=13% Similarity=0.094 Sum_probs=358.5
Q ss_pred hhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCC------CcccHHHHHHHHHhcCChHHHHHHH
Q 048766 19 DTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQP------SVVSWNSLISGYVQSGKYRKALNLF 92 (525)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~A~~~~ 92 (525)
+..+.+.+...-..+ +.||.+.+.|...|--.|++..+..+...+... -..+|-.+.+++-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 334444444444443 567788888888888889999999988877652 2345778899999999999999999
Q ss_pred HHHHhcCCCCCHhh--HHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcC----CHHHHHHHHhhcc
Q 048766 93 VELERSEIYADAYS--FTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG----SVEDAIGVFGEMI 166 (525)
Q Consensus 93 ~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 166 (525)
....+. .|+..+ +.-+...+.+.|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++.+..
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 888764 455433 4455677899999999999999998874 556778888888888775 5577777777776
Q ss_pred CC---ChhhHHHHHHHHHhCCChHHHHHHHhcC--------CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC------
Q 048766 167 DK---DIISWNSVIAASARNGNLELAFGFLHRL--------PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS------ 229 (525)
Q Consensus 167 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------ 229 (525)
++ |...|-.+...+....-+ .++..|..+ ....+...|.+...+...|++..|...|.....
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 64 555676666666554443 335554443 447788999999999999999999999987652
Q ss_pred -CCc------ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHhccccchHHHHHHHHHHHHhCCCch
Q 048766 230 -PNS------SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301 (525)
Q Consensus 230 -~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 301 (525)
++. .+-..+..++-..++++.|.+.|+.+... .|.- ..|..+.......++..+|...++.....+ ..+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 222 12344667777888999999999999886 4543 344444433445678889999999888776 566
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHh------------cCChhHHHHHHHHHhhCCC
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC-----RKNLVTWNAMITGYAR------------NGDLTKVIELFEQLKTVRD 364 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~ 364 (525)
+.+++.+...+.+...+..|.+-|..+. .+|+.+.-.|...|.+ .+..++|+++|.+..+
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--- 640 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--- 640 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---
Confidence 7777778889999999988888665553 3455555556665542 3457889999999988
Q ss_pred CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchh
Q 048766 365 LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGV 439 (525)
Q Consensus 365 ~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~ 439 (525)
..| |...-+.+.-.++..|+ +..|..+|..+++. ......+|-.+++.|..+|++..|+++|+.. ....+..
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~-~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGR-FSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred cCcchhhhccchhhhhhhccC-chHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 556 67778888888899999 99999999999875 3345677999999999999999999999975 3345678
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-------------------cChhHHHHHHHHHHH
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH-------------------GNWDVASVMRNFMRE 500 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~ 500 (525)
+...|..++.+.|.+.+|.+.+..++...|.++...+.++.+..+. +..++|.++|..|..
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999888777766443 346788889998888
Q ss_pred cCCc
Q 048766 501 RGLR 504 (525)
Q Consensus 501 ~~~~ 504 (525)
.+.+
T Consensus 798 ~~d~ 801 (1018)
T KOG2002|consen 798 NGDK 801 (1018)
T ss_pred cCCC
Confidence 7765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=175.06 Aligned_cols=300 Identities=12% Similarity=0.078 Sum_probs=182.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCC---cchhhHHHHHHHhcCC
Q 048766 78 GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG---VVIANCLIDMYGKCGS 154 (525)
Q Consensus 78 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 154 (525)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456677777777777777643 23445666677777777777777777777765421111 1345666666777777
Q ss_pred HHHHHHHHhhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 048766 155 VEDAIGVFGEMID---KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231 (525)
Q Consensus 155 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 231 (525)
+++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+...+...... ..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------------------~~ 179 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-----------------------EI 179 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------------------HH
Confidence 7777777776654 234455555555555555555555555541110000000 00
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 048766 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311 (525)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (525)
...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.+.+......++..++.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 1123445556666777777777777766542 223445556666666777777777777776665433334556667777
Q ss_pred HHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC---CCCCc
Q 048766 312 YSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH---TDIPF 386 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~ 386 (525)
|...|++++|...++.+. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+ .
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~-~ 334 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGR-A 334 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCcc-c
Confidence 777777777777777765 34555556677777777777777777777776 56777777766665553 335 6
Q ss_pred chHHHHHHHhhhhhCCCCChh
Q 048766 387 DKVSEYFESMTKDYGIKPTVE 407 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~~~ 407 (525)
+++..+++.+.+. ++.|++.
T Consensus 335 ~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 335 KESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred hhHHHHHHHHHHH-HHhCCCC
Confidence 7777777777765 6666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-17 Score=164.06 Aligned_cols=426 Identities=10% Similarity=0.056 Sum_probs=265.4
Q ss_pred HHHHHHccCCHHHHHHHHhcCCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCCh
Q 048766 44 LMGFYRKINSLADAHKMFVEIPQ--PSVV-SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120 (525)
Q Consensus 44 ll~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 120 (525)
-+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.... ..........+...+...|++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 34445677888888888888776 4431 2237777777888888888888887621 111222233334567777888
Q ss_pred HHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHh--CCChHHHHHHHhcC--
Q 048766 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASAR--NGNLELAFGFLHRL-- 196 (525)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~-- 196 (525)
++|.++++++.+.. +.+..++..++..+...++.++|++.++++...+......+..++.. .++..+|+..++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888888775 34566677777888888888888888888866443322223334333 55555588888887
Q ss_pred CCC-CcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccH------HHHHHHH-----HhcCC---hhHHHHHHHHH
Q 048766 197 PNP-DTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSW------NSILTGY-----VNRNR---VPEALHLFGEM 258 (525)
Q Consensus 197 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~------~~l~~~~-----~~~~~---~~~a~~~~~~m 258 (525)
..| +...+..+..++.+.|-...|.++..+-+. +....+ ..+++.- ....+ .+.|+.-++.+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 333 556677788888888888888887776542 111000 0111000 01112 24455555555
Q ss_pred hhC-CCCCC-HHHH----HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-
Q 048766 259 QSK-DVPMD-EYTF----STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK- 331 (525)
Q Consensus 259 ~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 331 (525)
... +-.|. ...| .--+.++...++..+++..|+.+...+.+....+-.++.++|...+++++|+.+++.+...
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 442 11232 1222 2234466677788888888888877776656667777888888888888888888876421
Q ss_pred --------CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC----------CCC--C-HhHHHHHHHHHcCCCCCcchHH
Q 048766 332 --------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRD----------LQP--D-SVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 332 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p--~-~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
+......|.-+|...+++++|..+++++.+... ..| | ...+..++..+...|+ +.+|+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-l~~Ae 436 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-LPTAQ 436 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-HHHHH
Confidence 122245667777778888888888887776320 012 2 1223344555666676 77777
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+.++++.. .-+-|......+.+.+...|++.+|.+.++.. ...|+ ..+....+.++...|++++|..+.+.+.+..
T Consensus 437 ~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 77777764 22336677777777777777777777777665 33444 3444556666667777777777777777777
Q ss_pred CCChhH
Q 048766 469 GDSDYV 474 (525)
Q Consensus 469 p~~~~~ 474 (525)
|+++.+
T Consensus 515 Pe~~~~ 520 (822)
T PRK14574 515 PEDIPS 520 (822)
T ss_pred CCchhH
Confidence 766644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-17 Score=161.15 Aligned_cols=418 Identities=11% Similarity=0.079 Sum_probs=312.8
Q ss_pred HHhccCchhhhhHHHHHHHHhCCCch-HHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHH---HHHHHhcCChHH
Q 048766 12 ASSDLGWDTYCQQLHCYILKSGFLSN-VFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL---ISGYVQSGKYRK 87 (525)
Q Consensus 12 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~ 87 (525)
...+.|++..|...|.+.++.. +-+ +.++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4568899999999999998885 333 3444 888889999999999999999988655544443 346777899999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC
Q 048766 88 ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167 (525)
Q Consensus 88 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (525)
|+++|+++.+.. +-+...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999864 334667777788889999999999999999876 45555665555555556677679999999965
Q ss_pred --C-ChhhHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchH------HHHHHHH-----HhcCCh---HHHHHHHhcC
Q 048766 168 --K-DIISWNSVIAASARNGNLELAFGFLHRLPN---PDTISY------NEVINGI-----AQFGDI---EDAIMILSSM 227 (525)
Q Consensus 168 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~------~~l~~~~-----~~~~~~---~~a~~~~~~~ 227 (525)
| +...+..+..++.+.|-...|.++.++-++ +....+ ...+..- ....++ +.|..-++.+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 556778888999999999999999987642 111100 1111100 011222 3333333333
Q ss_pred CC-----CCccc-----HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 048766 228 PS-----PNSSS-----WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297 (525)
Q Consensus 228 ~~-----~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 297 (525)
.. |.... ..-.+-++...|+..++++.|+.+...|.+....+-..+..+|...+++++|..++..+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 31 32211 223456778899999999999999999877677788999999999999999999999997653
Q ss_pred -----CCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-------------CH---hHHHHHHHHHHhcCChhHHHH
Q 048766 298 -----LDASIVVASALLDMYSKCGQVEIADSMFRSLCR--K-------------NL---VTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 298 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-------------~~---~~~~~l~~~~~~~~~~~~a~~ 354 (525)
.+++......|.-+|...+++++|..+++.+.+ | |. ..+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 233455567889999999999999999998863 1 11 134456777889999999999
Q ss_pred HHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 355 LFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.++++.. ..| |......+...+...|. +.+|.+.++... .+.|+ ..+....+..+...|++.+|..+.+.+
T Consensus 438 ~le~l~~---~aP~n~~l~~~~A~v~~~Rg~-p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 438 KLEDLSS---TAPANQNLRIALASIYLARDL-PRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999988 455 67888888899999999 999999997776 44664 667778888999999999999999876
Q ss_pred -CCCCchhHH
Q 048766 433 -GFGSYGVVW 441 (525)
Q Consensus 433 -~~~~~~~~~ 441 (525)
...|+....
T Consensus 511 ~~~~Pe~~~~ 520 (822)
T PRK14574 511 ISRSPEDIPS 520 (822)
T ss_pred HhhCCCchhH
Confidence 334544433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-15 Score=140.41 Aligned_cols=490 Identities=11% Similarity=0.069 Sum_probs=393.1
Q ss_pred hccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHH
Q 048766 14 SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALN 90 (525)
Q Consensus 14 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~ 90 (525)
....+.+.|.-++.+..+.- +.+...+ -+|++..-++.|..+++...+ .+...|.+-...--++|+.+...+
T Consensus 387 VelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34445555666666666552 4444333 345556678888888877765 566677776666677888888888
Q ss_pred HHHHH----HhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCC--cchhhHHHHHHHhcCCHHHHHHHHhh
Q 048766 91 LFVEL----ERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCGSVEDAIGVFGE 164 (525)
Q Consensus 91 ~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (525)
++.+- ...|+..+...|..=...|-..|..-.++.+....+..|++.. ..+|..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 87764 4578888999998888889999999999999999888886543 46788888899999999999999988
Q ss_pred ccC---CChhhHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccH
Q 048766 165 MID---KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSW 235 (525)
Q Consensus 165 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 235 (525)
.++ .+...|......--..|..+.-..+|++. .+.....|......+-..|++..|..++....+ .+...|
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 765 35567777777777789999999999988 334455677777778888999999999887764 455678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
.+-+.......+++.|..+|.+.... .|+...|..-+...--.++.++|.+++++.++.- +.-...|..+...+.+.
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHH
Confidence 88888899999999999999988764 6777777777777777889999999999888864 55667888899999999
Q ss_pred CCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHH
Q 048766 316 GQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 316 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
++.+.|.+.|..-. +..+..|-.+...--+.|..-+|..++++..-.+ +-+...|...+..-.+.|. .+.|..+
T Consensus 699 ~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn-~~~a~~l 775 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGN-KEQAELL 775 (913)
T ss_pred HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCC-HHHHHHH
Confidence 99999999998776 3456688888888888999999999999998843 3367888899999999999 9999999
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
..++.+ ..+.+...|..-|.+..+.++-......+++-. .|+.+...+...+....+++.|.+.|.++++.+|++.
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 988876 556677788888888888888777777777753 5677788888889999999999999999999999999
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCcccEEEecceecc
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAH 520 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (525)
.+|..+...+.+.|.-++-.+++.+..... |.-|..|.-+++++..
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~i~n 897 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKDIKN 897 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhhHHh
Confidence 999999999999999999999998877653 5667888888877654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=145.20 Aligned_cols=271 Identities=11% Similarity=0.053 Sum_probs=209.9
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcccHH----HHHH-HHHh-cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc
Q 048766 209 NGIAQFGDIEDAIMILSSMPSPNSSSWN----SILT-GYVN-RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282 (525)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~l~~-~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 282 (525)
..+.+.|+++.|.+++.-..+.|..+-. .|-. -|.+ -.++..|.++-+..+... +-+......-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3567889999998888777654443322 2222 2222 345667777666655432 3344444444445567899
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 048766 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQL 359 (525)
Q Consensus 283 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (525)
+++|...|++.+..........|+ +.-.+...|++++|...|-++. ..+....-.+...|-...+...|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999999887555555555 3445778899999999998875 567777888889999999999999999988
Q ss_pred hhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc
Q 048766 360 KTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY 437 (525)
Q Consensus 360 ~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 437 (525)
.. +.| |+..+..|...|-+.|+ -.+|.+++-+-.+ -++-+..+...|..-|....-+++|+..|++. -+.|+
T Consensus 585 ~s---lip~dp~ilskl~dlydqegd-ksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 585 NS---LIPNDPAILSKLADLYDQEGD-KSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred cc---cCCCCHHHHHHHHHHhhcccc-hhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 87 556 67888889999999998 8888887655443 45668899999999999999999999999997 67899
Q ss_pred hhHHHHHHHHHh-cCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 438 GVVWRALLSASG-ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 438 ~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..-|..++.+|. +.|++.+|..+|+......|.+...+..|.+++...|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999888875 58999999999999999999999999999999888774
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-15 Score=132.73 Aligned_cols=406 Identities=11% Similarity=0.084 Sum_probs=277.1
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHc--cCCHH------------------------HHHH
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRK--INSLA------------------------DAHK 59 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~------------------------~a~~ 59 (525)
=++|+. ...+|.+..+.-+++.|.+.|++.++.+...|+..-+- ..++- ...+
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 344444 34678999999999999999998888877777665442 11111 1112
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCc
Q 048766 60 MFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV 139 (525)
Q Consensus 60 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 139 (525)
++-+....+..+|..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|.+....||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 3333333566789999999999999999999999999988899999999999875432 227899999999999999
Q ss_pred chhhHHHHHHHhcCCHHHHHHH----Hhhc----cCCChhhHHHHHHHHHhCCChHH-HHHHHhcC-----------C-C
Q 048766 140 VIANCLIDMYGKCGSVEDAIGV----FGEM----IDKDIISWNSVIAASARNGNLEL-AFGFLHRL-----------P-N 198 (525)
Q Consensus 140 ~~~~~l~~~~~~~g~~~~a~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~-----------~-~ 198 (525)
.|+|+++.+..+.|+++.|.+. +.+| ++|...+|..+|..+.+.++..+ +..++.++ . +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999999876554 4455 45888999999999999998755 44444433 1 1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCC--------CC---cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 048766 199 PDTISYNEVINGIAQFGDIEDAIMILSSMPS--------PN---SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE 267 (525)
Q Consensus 199 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 267 (525)
.|...|...+..|....+.+-|..+..-... ++ ..-|..+....++....+..+.+|+.|.-+-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 2445677788888888898888877654431 22 234667778888889999999999999988788999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHh--
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYAR-- 345 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-- 345 (525)
.+...++++....+.++-.-+++..+...|...+......++..+++..- .|+...-..+-....+
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCA 501 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999988888755544444444444443320 1111111111111111
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH---HHHHHHhccCCh
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC---SMIRLMGQKGEV 422 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~ 422 (525)
..-.+.....-.++.+ ..-.....+.++-.+.+.|. .++|.+++..+.+.+.--|.....+ .+++.-.+..++
T Consensus 502 ad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~-~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGR-TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcch-HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 0011222222334444 23334445566666677777 7788877777754433233333333 445555667777
Q ss_pred HHHHHHHHHh
Q 048766 423 WRAQRMIREL 432 (525)
Q Consensus 423 ~~A~~~~~~~ 432 (525)
-+|+.+++-+
T Consensus 578 sqA~~~lQ~a 587 (625)
T KOG4422|consen 578 SQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHH
Confidence 7777777766
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-14 Score=137.05 Aligned_cols=466 Identities=12% Similarity=0.088 Sum_probs=294.9
Q ss_pred ccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhc---CCCCCcccHHHHHHHHHhcCChHHHHHH
Q 048766 15 DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE---IPQPSVVSWNSLISGYVQSGKYRKALNL 91 (525)
Q Consensus 15 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 91 (525)
..|++++|..++.++++.. +.+...|..|...|-..|+.+++...+-. +...|...|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999887 78889999999999999999999876643 3335667888898888999999999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhH----HHHHHHhcCCHHHHHHHHhhccC
Q 048766 92 FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC----LIDMYGKCGSVEDAIGVFGEMID 167 (525)
Q Consensus 92 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~ 167 (525)
|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..-... .+..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998864 45555555556778888999999999999988754333333333 34556667777888888877744
Q ss_pred --C---ChhhHHHHHHHHHhCCChHHHHHHHhcCCC------C-------------------------------------
Q 048766 168 --K---DIISWNSVIAASARNGNLELAFGFLHRLPN------P------------------------------------- 199 (525)
Q Consensus 168 --~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~------------------------------------- 199 (525)
. +...++.++..+.+...++.+......... +
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1 445677778888888777777766554411 0
Q ss_pred ------------------------CcchHHHHHHHHHhcCChHHHHHHHhcCCC----CCcccHHHHHHHHHhcCChhHH
Q 048766 200 ------------------------DTISYNEVINGIAQFGDIEDAIMILSSMPS----PNSSSWNSILTGYVNRNRVPEA 251 (525)
Q Consensus 200 ------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a 251 (525)
+...|..+..++...|++.+|..+|..+.. .+...|-.+..+|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 344555666677777777777777766653 3445677777777777777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 048766 252 LHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI--------KQGLDASIVVASALLDMYSKCGQVEIADS 323 (525)
Q Consensus 252 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 323 (525)
.+.|+..+... +.+...-..|...+...|+.++|.+.+..+. ..++.|+..+.......+.+.|+.++=..
T Consensus 469 ~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 77777766541 2233344455556667777777777666632 22344555554455555555555543222
Q ss_pred HHHhcc----------C--------------------------------------------C-----------CHh----
Q 048766 324 MFRSLC----------R--------------------------------------------K-----------NLV---- 334 (525)
Q Consensus 324 ~~~~~~----------~--------------------------------------------~-----------~~~---- 334 (525)
+-..+. + + +..
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 111110 0 0 000
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh---HH-HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV---TF-LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VE 407 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~-~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 407 (525)
.+.-++..+++.+++++|+.+...+.+.....-+.. .+ ...+.+++..++ +..|..+++.+...++...+ ..
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d-~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD-PGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 123345566777777777777777766431111222 11 233445555666 77787777777765433322 23
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-CCCCch--hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG--VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
.|+.......+.|+-.-=.+.+..+ ..+|+. ......+.....++.+..|+..+-++....|++|.+-..++.++..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 3443344444444444334444433 222222 2222223334567888999999999999999888887777766644
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-15 Score=131.29 Aligned_cols=407 Identities=12% Similarity=0.062 Sum_probs=257.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCC-cchhhHHHHHHHh
Q 048766 74 SLISGYVQSGKYRKALNLFVELERSEIYAD-AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERG-VVIANCLIDMYGK 151 (525)
Q Consensus 74 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 151 (525)
....-|.++|++++|++.|.+..+ ..|| +..|.....+|...|+|+++.+--...++.+ |+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHh
Confidence 344556788899999999999887 4677 6777888888888899998888777776643 33 4455566667777
Q ss_pred cCCHHHHHHHHhhc--cCC-ChhhHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHh
Q 048766 152 CGSVEDAIGVFGEM--IDK-DIISWNSVIAASARNGNLELAFGFLHRLPN---PDTISYNEVINGIAQFGDIEDAIMILS 225 (525)
Q Consensus 152 ~g~~~~a~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 225 (525)
.|++++|+.=+.-. .+. +......++.-..+.--..++.+-+..-.. |+.....+....+...- - .
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~----~----~ 267 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP----K----P 267 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc----c----c
Confidence 78888775321111 000 000011111111111112222333331111 22222222222211000 0 0
Q ss_pred cCCCCCcccHHHHHHHHHh--cC---ChhHHHHHHHHHhhCC-CCC-----CHH----HHHHHH--HHhccccchHHHHH
Q 048766 226 SMPSPNSSSWNSILTGYVN--RN---RVPEALHLFGEMQSKD-VPM-----DEY----TFSTML--SGIAGLSALTWGML 288 (525)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~~-~~~-----~~~----~~~~l~--~~~~~~~~~~~a~~ 288 (525)
.+..+.......+..++.. .+ .+..|.+.+.+-.... ..+ |.. .-..++ .-+.-.|+.-.+..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 0000111122222222111 11 2344444433322110 011 111 111111 12334577788888
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 048766 289 IHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365 (525)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (525)
-++..++....+ ...|-.+..+|....+.++-...|+... +.|+.+|..-...+.-.+++++|..=|++... +
T Consensus 348 d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L 423 (606)
T KOG0547|consen 348 DFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS---L 423 (606)
T ss_pred hHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh---c
Confidence 888888776433 3336667778999999999999998886 45677888888888888999999999999998 7
Q ss_pred CCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc------
Q 048766 366 QPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY------ 437 (525)
Q Consensus 366 ~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~------ 437 (525)
.|+ ...|..+..+..+.+. +++++..|++..+ .++..+..|+...+.+...+++++|.+.|+.. ...|.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHK-IAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 774 5777777777888888 9999999999987 56667889999999999999999999999976 33333
Q ss_pred ---hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 438 ---GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 438 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+.+...++..-. .+++..|+.++.++++++|....++..|+....++|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233333443333 38999999999999999999999999999999999999999999997643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-18 Score=153.74 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=113.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEY-TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
.+...+.+.|++++|++++++......+|+.. -|..+...+...++.+.|...++.+...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667778888888888886655443234433 34445556667788888888888887766 3356667777776 688
Q ss_pred CCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHH
Q 048766 316 GQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393 (525)
Q Consensus 316 g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~ 393 (525)
+++++|.+++...- .+++..+..++..+...++++++.++++.+......+++...|..+...+.+.|+ .++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~-~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD-PDKALRDY 169 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH-HHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 99999988887764 3556677788888999999999999999987654244567778888888999998 99999999
Q ss_pred HHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 394 ESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 394 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
++..+. .| ++.....++..+...|+.+++.++++.. ..+.++..|..++.++...|++++|+..++++.+..|+
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999864 56 5778889999999999999988888876 22455677889999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
|+.+...++.++...|+.++|.+++.++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999987754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-13 Score=122.09 Aligned_cols=451 Identities=12% Similarity=0.101 Sum_probs=324.3
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-hHHHHHH
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAY-SFTSALA 112 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~ 112 (525)
+...|..-.+.=-..+++..|..+|+.... .+...|-..+..-.+..+...|..++++... +-|.+. .|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHH
Confidence 344444444444456778888999988876 5666787788888888899999999998876 345432 3444444
Q ss_pred HHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhc--cCCChhhHHHHHHHHHhCCChHHHH
Q 048766 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM--IDKDIISWNSVIAASARNGNLELAF 190 (525)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 190 (525)
.--..|++..|.++|+.-.+ ..|+...|++.|+.-.+.+.++.|..+++.. ..|++.+|-....--.+.|....+.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 44567899999999988877 4799999999999999999999999999887 4588888988888888899998888
Q ss_pred HHHhcCCC------CCcchHHHHHHHHHhcCChHHHHHHHhcCCC--C---CcccHHHHHHHHHhcCChhHHHHH-----
Q 048766 191 GFLHRLPN------PDTISYNEVINGIAQFGDIEDAIMILSSMPS--P---NSSSWNSILTGYVNRNRVPEALHL----- 254 (525)
Q Consensus 191 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~----- 254 (525)
.+|+...+ .+...+.++...-..++.++.|.-+|.-..+ | ....|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 88888722 1233455555555567778888887765442 2 233455555555566665554443
Q ss_pred ---HHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCch------HHHHHHHHHHH---HcCCCHHHHH
Q 048766 255 ---FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS------IVVASALLDMY---SKCGQVEIAD 322 (525)
Q Consensus 255 ---~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~---~~~g~~~~A~ 322 (525)
|+.+...+ +.|-.+|--.++.-...|+.+...++|+.++..-.+.. ..+|..+=-++ ....+.+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444432 55777888888888888999999999998887642222 12222221111 2467888888
Q ss_pred HHHHhcc---CCCHh----HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHH
Q 048766 323 SMFRSLC---RKNLV----TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFES 395 (525)
Q Consensus 323 ~~~~~~~---~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 395 (525)
++++.+. +.... .|-.......++.+...|.+++..... ..|-..+|...|..-.+.+. ++....++++
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG---~cPK~KlFk~YIelElqL~e-fDRcRkLYEk 462 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG---KCPKDKLFKGYIELELQLRE-FDRCRKLYEK 462 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc---cCCchhHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 9888775 23333 344445555678899999999998876 78989999999998888888 9999999999
Q ss_pred hhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 396 MTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 396 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
..+ ..| +..+|...+..-...|+.+.|..+|+-+-..|. ...|.+.+..-...|.++.|..+|+++++..+
T Consensus 463 fle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~- 538 (677)
T KOG1915|consen 463 FLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ- 538 (677)
T ss_pred HHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-
Confidence 884 455 677888888888889999999999998733443 34566666666788999999999999999887
Q ss_pred ChhHHHHHHHHHh-----hcc-----------ChhHHHHHHHHHHH
Q 048766 471 SDYVYVMLCNLYT-----SHG-----------NWDVASVMRNFMRE 500 (525)
Q Consensus 471 ~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 500 (525)
+.-+|...+..-. ..| ....|..+|++...
T Consensus 539 h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 539 HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 5557777666554 334 56678888877654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-13 Score=124.32 Aligned_cols=462 Identities=11% Similarity=0.040 Sum_probs=374.2
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--------CCcccHHHHHHHH
Q 048766 8 HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--------PSVVSWNSLISGY 79 (525)
Q Consensus 8 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~ll~~~ 79 (525)
-|..++++..-++.|..++....+. ++.++..|..-...=-..|+.+.+.+++++-.. .+...|-.=...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3566788888999999999988766 577888887777666778999888888865432 4555666666777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHH
Q 048766 80 VQSGKYRKALNLFVELERSEIYAD--AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVED 157 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 157 (525)
-..|..-.+..+......-|+.-. ..||..-...|.+.+.++-+..+|...++. ++.+..+|...+..--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 788888888888888887776543 458888889999999999999999999886 45677888888888788899999
Q ss_pred HHHHHhhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--C
Q 048766 158 AIGVFGEMID---KDIISWNSVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMP--S 229 (525)
Q Consensus 158 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~ 229 (525)
-..+|++... .....|-.....+...|+...|..++.+. .+.+...|..-+........++.|..+|.+.. .
T Consensus 569 l~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 9999999865 35566777788888899999999999988 33456788888899999999999999998876 4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHH
Q 048766 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309 (525)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 309 (525)
++...|.--+...--.++.++|++++++.++. ++.-...|..+...+.+.++.+.|...|..-.+.- +..+..+..+.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHH
Confidence 77788888888878889999999999998876 34445677788888889999999988887666543 66778888899
Q ss_pred HHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCc
Q 048766 310 DMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 386 (525)
..-.+.|.+-.|+.+++... +.|...|-..|+.-.+.|+.+.|..++.+..+. .+.+...|..-|...-+.++ -
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~r-k 803 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQR-K 803 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCccc-c
Confidence 99999999999999999886 456779999999999999999999999998884 34455667677766666655 4
Q ss_pred chHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
......++ ....|+.+...+...+....++++|.+.|.+. ...|| ..+|..+...+.++|.-+.-.+++.+.
T Consensus 804 Tks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 804 TKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444444 33567788889999999999999999999987 55565 678888999999999999999999999
Q ss_pred HhhcCCChhHHHHHHHHH
Q 048766 465 IKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 465 ~~~~p~~~~~~~~l~~~~ 482 (525)
...+|.+...|.....--
T Consensus 878 ~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 878 ETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hccCCCCCcHHHHHhhhH
Confidence 999998877777665443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-13 Score=119.47 Aligned_cols=424 Identities=12% Similarity=0.084 Sum_probs=296.7
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHH--HcccCChHHH-HHHHHHHHHcccCCCcchhhHH
Q 048766 69 VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA--CGQLGSLQLG-MAIHSKIVKYSLERGVVIANCL 145 (525)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 145 (525)
+.+-|.|++. ..+|....+.-+|+.|...|+..+...-..|++. |....++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666664 4678888999999999999988777766655544 3333333222 23344444444 3334444
Q ss_pred HHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC----CCCCcchHHHHHHHHHhcCChHHHH
Q 048766 146 IDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL----PNPDTISYNEVINGIAQFGDIEDAI 221 (525)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~ 221 (525)
+.|+..+ ++-+...+...++..+|.++++--..+.|.+++++. .+.+..+||.+|.+-.-..+-+-.-
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~ 262 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVA 262 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHH
Confidence 3455444 555566667789999999999999999999999988 4457788898887766555533333
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCChhH----HHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHH-HHHHHHHHH-
Q 048766 222 MILSSMPSPNSSSWNSILTGYVNRNRVPE----ALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG-MLIHSCVIK- 295 (525)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~- 295 (525)
+....-..||..|+|+++++..+.|+++. |++++.+|.+-|+.|...+|..+|..+++.++..+. ..+...+..
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 33333346999999999999999998765 578899999999999999999999999998887553 333333322
Q ss_pred ---hCC----CchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--------CC---HhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 296 ---QGL----DASIVVASALLDMYSKCGQVEIADSMFRSLCR--------KN---LVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 296 ---~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
..+ +.+...|...+..|.+..+.+.|.++-.-+.. ++ ..-|..+....++....+....+|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 33566777888888899999999888776642 22 2246667788888899999999999
Q ss_pred HHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC-Ch--------HH----
Q 048766 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG-EV--------WR---- 424 (525)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~---- 424 (525)
.|.-.- .-|+..+-..++++....+. ++-.-++|..+..- |...+......+...+++.. ++ ..
T Consensus 423 ~lVP~~-y~p~~~~m~~~lrA~~v~~~-~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 423 DLVPSA-YFPHSQTMIHLLRALDVANR-LEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred Hhccce-ecCCchhHHHHHHHHhhcCc-chhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 998877 88999999999999998888 99888999888754 65555544444555555443 11 00
Q ss_pred -HHHHHHH-------h-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc---CCCh--hHHHHHHHHHhhccChhH
Q 048766 425 -AQRMIRE-------L-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE---GDSD--YVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 425 -A~~~~~~-------~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~~~ 490 (525)
|..+++. + ...-.+......+..+.+.|..++|.+++....+.. |..| .+...+.+.-.+.++...
T Consensus 500 ~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 1111111 1 222334556666677788999999999999887644 4333 334566677777888999
Q ss_pred HHHHHHHHHHcCCccCCc
Q 048766 491 ASVMRNFMRERGLRKEAG 508 (525)
Q Consensus 491 A~~~~~~~~~~~~~~~~~ 508 (525)
|+..++-|...+.....+
T Consensus 580 A~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPICEG 597 (625)
T ss_pred HHHHHHHHHHcCchhhhH
Confidence 999999888877765443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-13 Score=118.33 Aligned_cols=472 Identities=14% Similarity=0.079 Sum_probs=346.1
Q ss_pred cCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcc-cHHHHHHHHHhcCChHHHHHHH
Q 048766 16 LGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVV-SWNSLISGYVQSGKYRKALNLF 92 (525)
Q Consensus 16 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~ 92 (525)
++++..|..+|++.+..+ ..+...|..-+.+=.++..+..|.-+++.... |.+. .|-..+..--..|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 467889999999998777 77888888888888899999999999988765 4432 4555555555679999999999
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC--C-
Q 048766 93 VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK--D- 169 (525)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~- 169 (525)
++..+ ..|+...|.+.|+.-.+.+.++.|..+++..+-. .|++..|.-..+.-.+.|....+..+|+...+. |
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99887 5899999999999999999999999999998874 599999999999999999999999999988652 2
Q ss_pred ---hhhHHHHHHHHHhCCChHHHHHHHhcC----CCC-CcchHHHHHHHHHhcCChHHHHHHHh---cC-----CC---C
Q 048766 170 ---IISWNSVIAASARNGNLELAFGFLHRL----PNP-DTISYNEVINGIAQFGDIEDAIMILS---SM-----PS---P 230 (525)
Q Consensus 170 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~---~~-----~~---~ 230 (525)
...+.+....-.++..++.|.-+|+-. +.. ....|..+...--+.|+.....+..- ++ .+ -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 223444444445567788888887765 222 23455555555556676655544432 22 22 4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-------HHHHHHHHHh---ccccchHHHHHHHHHHHHhCCCc
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE-------YTFSTMLSGI---AGLSALTWGMLIHSCVIKQGLDA 300 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 300 (525)
|-.+|-..+..-...|+.+...++|+..+.. ++|-. ..|..+--+| ....+.+.+.++++..++. +|.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 5567777888888899999999999999876 56532 2232222222 2467889999999999883 455
Q ss_pred hHHHHHHHHHHH----HcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHH
Q 048766 301 SIVVASALLDMY----SKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFL 373 (525)
Q Consensus 301 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 373 (525)
...++..+--+| .++.++..|.+++.... -|-..+|...|..-.+.++++.+..+|++..+ ..| |-.++.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHH
Confidence 556666554444 46889999999999887 56677888889988999999999999999999 566 568888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHh---
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASG--- 449 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~--- 449 (525)
.....-...|+ .+.|..+|+-+...-.+......|...|+.-...|.++.|..+++++ ...+...+|..+...-.
T Consensus 476 kyaElE~~Lgd-tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 476 KYAELETSLGD-TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccc
Confidence 88888888899 99999999998864233334556777777778899999999999997 44556667877765443
Q ss_pred --cCC-----------ChHHHHHHHHHHHhhc--CCChhH----HHHHHHHHhhccChhHHHHHHHHH
Q 048766 450 --ACS-----------DLDVARISAAEVIKLE--GDSDYV----YVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 450 --~~~-----------~~~~A~~~~~~~~~~~--p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
+.+ ....|..+|+++.... .++-.- +..+...-...|.-.+...+-++|
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 334 5678888999887643 111222 223333334456555555554444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-12 Score=125.98 Aligned_cols=315 Identities=16% Similarity=0.138 Sum_probs=217.3
Q ss_pred HHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCCh
Q 048766 44 LMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120 (525)
Q Consensus 44 ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 120 (525)
......-.|+.++|.+++.++.+ .+...|..|...|-+.|+.+++...+-..-..+ +-|...|..+.....+.|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33333344999999999999876 567789999999999999999988775554432 44667888888889999999
Q ss_pred HHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCCh----h----hHHHHHHHHHhCCChHHHHHH
Q 048766 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI----I----SWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~ 192 (525)
+.|.-.|.++++.. +++...+-.-+..|-+.|+...|...|.++...++ . .-...+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999986 56677777778899999999999999999865332 1 223345667778888999998
Q ss_pred HhcCC-----CCCcchHHHHHHHHHhcCChHHHHHHHhcCCC--------------------------CCcccHH----H
Q 048766 193 LHRLP-----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS--------------------------PNSSSWN----S 237 (525)
Q Consensus 193 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~----~ 237 (525)
++... ..+...++.++..+.+...++.|......... ++...|. -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 88772 24566788888888888888888766544321 1111111 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCC--CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQSKDVPM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
++-++.+....+....+........+.| +...|.-+..++...|++..|..++..+......-+..+|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223333333333333333344444333 34456667777777777777777777777665555566777777777777
Q ss_pred CCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 316 GQVEIADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLK 360 (525)
Q Consensus 316 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (525)
|.++.|.+.|+.+... +...--.|...+.+.|+.++|.+++..+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 7777777777776522 33344445566667777777777777643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-13 Score=124.95 Aligned_cols=474 Identities=12% Similarity=0.033 Sum_probs=292.4
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhc--CCCCCcccHHHHHHHHHhcC
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE--IPQPSVVSWNSLISGYVQSG 83 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~~~~~~ 83 (525)
+..+++-+..+.++..|.-+-+.+...+ .++...--+++++.-.|+++.|..+... +...|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4455555666667777777777766555 3444444567778778888888877754 33477777778888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHh
Q 048766 84 KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFG 163 (525)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 163 (525)
++++|..++..-. +.-+...|-.-=. +..-..+.+. ++ .+......++-.-...|....+.++|...|.
T Consensus 97 ~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 97 EWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 8888888876331 1111111100000 0000011111 00 0111112222223344555566777777777
Q ss_pred hccCCChhhHHHHHHHHHhC-CChHHHHHHHhcC-----CCCCcchHHHHHHHHHhcCChHHHHHHH--hcCC--CCCcc
Q 048766 164 EMIDKDIISWNSVIAASARN-GNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDIEDAIMIL--SSMP--SPNSS 233 (525)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~--~~~~~ 233 (525)
+....|+..+..+...-... =..++-..++... ...+......+.........-+.....- ..+. +.++.
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 76666655444432211110 0111222333322 1111111111111110000000000000 0000 13444
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (525)
.......-+...+++.+..++.++..+. .++....+..-|.++...|+..+-..+-..+.+.- |....+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 4455556677788899999998888876 35666666666677777777777766666666654 666777888888888
Q ss_pred cCCCHHHHHHHHHhccCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchH
Q 048766 314 KCGQVEIADSMFRSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a 389 (525)
-.|+.++|++.|.+...-| ...|-.+...|+-.|..+.|+..|..+.+ .-|. ...+.-+..-|...++ .+.|
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar---l~~G~hlP~LYlgmey~~t~n-~kLA 399 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR---LMPGCHLPSLYLGMEYMRTNN-LKLA 399 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH---hccCCcchHHHHHHHHHHhcc-HHHH
Confidence 8899999999998876433 35788888999999999999998888777 3443 2223344445666777 8899
Q ss_pred HHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--------CCCC-chhHHHHHHHHHhcCCChHHHHH
Q 048766 390 SEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--------GFGS-YGVVWRALLSASGACSDLDVARI 459 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 459 (525)
.++|.... ++.| |+...+-++-.....+.+.+|...|+.. +..+ -.+++..|+.+|.+.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99998887 5566 5777777777778888899998888865 1111 24567778888899999999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 460 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+++++.+.|.++.++..++-+|...|+.+.|+..|.+....
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999888877654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-13 Score=119.69 Aligned_cols=258 Identities=10% Similarity=0.052 Sum_probs=191.2
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH--HHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML--SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
..+.+.|+++.|.++++-+....-+.-...-+.|- .-+....++..|.++-+..+... ..+....+.-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45788999999999998887654333222222222 22223446777777777666554 3344443333444456799
Q ss_pred HHHHHHHHHhccCCCHhHHHHH---HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHH
Q 048766 318 VEIADSMFRSLCRKNLVTWNAM---ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 318 ~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
+++|.+.+++....|...-..| .-.+-..|+.++|++.|-++..- +..+...+..+...|....+ ..+|++++-
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~led-~aqaie~~~ 582 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLED-PAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhC-HHHHHHHHH
Confidence 9999999999997776644443 34567789999999999988762 34456777788888888888 999999998
Q ss_pred HhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
.... -++.|+.....|.+.|-+.|+-.+|.+..-+- -++.+..+...|..-|....-+++|+.+|+++--+.|.-.
T Consensus 583 q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 583 QANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred Hhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7753 45668999999999999999999999886654 3445667777788888888889999999999999999544
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..-...+.++.+.|++..|..+|+....+-+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 4445566778889999999999998876544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-14 Score=132.11 Aligned_cols=247 Identities=9% Similarity=0.013 Sum_probs=155.4
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHH--HHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFS--TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. |.++.+...+...|.+.|+++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 5556666666666665543 33332221 22344555566666666666665554 4455556666666666666666
Q ss_pred HHHHHHhccCC---CHh--------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH
Q 048766 321 ADSMFRSLCRK---NLV--------TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 321 A~~~~~~~~~~---~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a 389 (525)
|.+++..+.+. +.. +|..++.......+.+...++++.+.+. .+.+......+...+...|+ .++|
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~-~~~A 282 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDD-HDTA 282 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCC-HHHH
Confidence 66666655421 111 2223333333444556666666666442 23456677777788888888 8888
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
.+.+++..+. +|++... ++.+....++.+++++.++++ ...|+ +.....++..|.+.|++++|.+.|+++++.
T Consensus 283 ~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 283 QQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888777642 4554322 223334558888888888776 33444 556678888888889999999999999988
Q ss_pred cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 468 EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 468 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.| +...+..++.++.+.|+.++|.+++++-...
T Consensus 358 ~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 358 RP-DAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88 5666778889999999999998888876543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-13 Score=119.65 Aligned_cols=327 Identities=14% Similarity=0.076 Sum_probs=240.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcc-cHHHHHHHHHhcC
Q 048766 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS-SWNSILTGYVNRN 246 (525)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~ 246 (525)
.|...+-.....+.+.|..+.|++.|......-+..|.+.+....-..+.+.+..+.......+.. .--.+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 354445555556667777777777777764433444444444433344444444444333221111 1122345566666
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCCHHHHHHH
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD--ASIVVASALLDMYSKCGQVEIADSM 324 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 324 (525)
+.+++++-.......|++.+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.-.....+.---..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 88888888888888888877777777777778889999999999999988521 2566676665333222222222222
Q ss_pred HHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC
Q 048766 325 FRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403 (525)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 403 (525)
.-.+.+--+.|..++..-|.-.++.++|...|++..+ +.|. ...|+.+.+-|....+ ...|++.++.+. .+.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKN-t~AAi~sYRrAv---di~ 394 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKN-THAAIESYRRAV---DIN 394 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcc-cHHHHHHHHHHH---hcC
Confidence 2233344566778888888999999999999999999 7776 4666677777888888 999999999998 455
Q ss_pred C-ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 404 P-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 404 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
| |-..|..|+++|.-.+.+.-|+-.|++. .. +.|...|.+|+..|.+.++.++|+.+|.+++..+--+..++..|+.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6 7788999999999999999999999998 33 4468899999999999999999999999999998778899999999
Q ss_pred HHhhccChhHHHHHHHHHHHc
Q 048766 481 LYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+|.+.++..+|.+++++.++.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999988763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-13 Score=125.55 Aligned_cols=248 Identities=15% Similarity=0.015 Sum_probs=175.9
Q ss_pred HhcCChHHHHHHHhcCCC--CCcccHH--HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHH
Q 048766 212 AQFGDIEDAIMILSSMPS--PNSSSWN--SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287 (525)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 287 (525)
.+.|+++.|...+.++.+ |+..... .....+...|+++.|...++++.+.. +-++..+..+...+.+.|+++++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555443 2222111 22445666677777777777766653 334556666666777777777777
Q ss_pred HHHHHHHHhCCCchH-------HHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 288 LIHSCVIKQGLDASI-------VVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
.++..+.+.+..++. .++..++.......+.+...++++.++ +.++.....+...+...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777666543222 122333444444556677788888876 4577788889999999999999999999
Q ss_pred HHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC
Q 048766 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS 436 (525)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 436 (525)
+..+ ..|+... .++.+....++ .+++.+..+...+. .+-|+..+..+++.+.+.|++++|.+.|+.. ...|
T Consensus 288 ~~l~---~~~~~~l--~~l~~~l~~~~-~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 288 DGLK---RQYDERL--VLLIPRLKTNN-PEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHh---cCCCHHH--HHHHhhccCCC-hHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9988 4555532 23344445577 89999999999864 3446777889999999999999999999997 7789
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+...+..+...+.+.|+.++|.+++++.+.+-
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99998899999999999999999999998754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-12 Score=116.40 Aligned_cols=357 Identities=16% Similarity=0.143 Sum_probs=248.2
Q ss_pred ccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcc-hHHHHHHHHH
Q 048766 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI-SYNEVINGIA 212 (525)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~ 212 (525)
+...|...+-.....+.+.|..+.|+..|...+..-+..|.+.+....-.-+.+.+..+....+..+.. .--.+..++-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 345566666666667778899999999999887765666665555443344444444333333221111 1112334555
Q ss_pred hcCChHHHHHHHhcCCC---CC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHhccccchHHH
Q 048766 213 QFGDIEDAIMILSSMPS---PN-SSSWNSILTGYVNRNRVPEALHLFGEMQSKDV--PMDEYTFSTMLSGIAGLSALTWG 286 (525)
Q Consensus 213 ~~~~~~~a~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 286 (525)
.....+++..-.+.... |+ ...-+....+.-...++++|+.+|+++.++.. --|..+|..++-.-....++
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL--- 315 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL--- 315 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH---
Confidence 55566666555544432 22 22233334455567899999999999998731 12456676665443322221
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 287 MLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVR 363 (525)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 363 (525)
.++.+-.-.--+-.+.+.-.+.+-|.-.++.++|...|+...+.| ...|+.+.+-|....+...|++-|+++.+
T Consensus 316 -s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 316 -SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred -HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 111111111113445666778888888999999999999987544 45799999999999999999999999999
Q ss_pred CCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchh
Q 048766 364 DLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGV 439 (525)
Q Consensus 364 ~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~ 439 (525)
+.| |-..|-.+.++|.-.+. +.=|+-+|++..+ ++| |+..|..|++.|.+.++.++|++.|.+. ....+..
T Consensus 393 -i~p~DyRAWYGLGQaYeim~M-h~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKM-HFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcc-hHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 667 77899999999999998 8999999999874 455 7899999999999999999999999987 3344567
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhh-------cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKL-------EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+..++..|-+.++..+|...|++-++. +|....+...|+.-+.+.+++++|..+-......
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 8889999999999999999999998872 3444455556888889999999998876665544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-14 Score=130.70 Aligned_cols=279 Identities=14% Similarity=0.113 Sum_probs=221.5
Q ss_pred CChHHHHHHHhcCCC--CCc-ccHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHHhccccchHHHHHH
Q 048766 215 GDIEDAIMILSSMPS--PNS-SSWNSILTGYVNRNRVPEALHLFGEMQSKD--VPMDEYTFSTMLSGIAGLSALTWGMLI 289 (525)
Q Consensus 215 ~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 289 (525)
-+.++|...|..+++ +|+ .....+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+. -+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 357889999988653 333 345667889999999999999999998752 122556677666554321 12222
Q ss_pred H-HHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 048766 290 H-SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365 (525)
Q Consensus 290 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (525)
+ +.+.+.. +..+.+|-++.++|.-+++.+.|++.|++..+.| ..+|+.+..-+.....+|.|...|+.... +
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---V 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---C
Confidence 2 2333333 6778999999999999999999999999998544 46888888888999999999999999877 6
Q ss_pred CCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHH
Q 048766 366 QPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVW 441 (525)
Q Consensus 366 ~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 441 (525)
.|. -..|..+...|.+.++ ++.|+-.|+++. .+.| +......++..+.+.|+.++|+.+++++ ..+| ++..-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek-~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEK-LEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccch-hhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 664 4667778888999999 999999999988 6677 4566777888999999999999999997 3333 44455
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
...+..+...+++++|+..++++.++-|++..++..++..|.+.|+.+.|+..|.-+.+..++.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 5566777788999999999999999999999999999999999999999999998887766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-12 Score=124.12 Aligned_cols=251 Identities=13% Similarity=-0.028 Sum_probs=119.7
Q ss_pred HHHHhcCChHHHHHHHhcCCC--CCcc--cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchH
Q 048766 209 NGIAQFGDIEDAIMILSSMPS--PNSS--SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALT 284 (525)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 284 (525)
.+....|+.+.|.+.+.+..+ |+.. ........+...|+++.|...++.+.+.. +-+...+..+...+...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 334444555555555444321 2221 12223455555666666666666666553 224445555556666666666
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHH-------HcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHH
Q 048766 285 WGMLIHSCVIKQGLDASIVVASALLDMY-------SKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
.+...+..+.+.+..+.......-..++ ......+...+.++..+. .++..+..++..+...|+.+.|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 6666666666554332222111111111 111222333344444432 245555555566666666666666
Q ss_pred HHHHHhhCCCCCCCHhHHH-HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 355 LFEQLKTVRDLQPDSVTFL-NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
++++..+ ..||..... .++..+ .....++.+.+.+.+++.
T Consensus 285 ~l~~~l~---~~pd~~~~~~~~l~~~-----------------------------------~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 285 IIFDGLK---KLGDDRAISLPLCLPI-----------------------------------PRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHh---hCCCcccchhHHHHHh-----------------------------------hhcCCCChHHHHHHHHHHH
Confidence 6666655 333332100 011111 111123334444444433
Q ss_pred CCCCc-h--hHHHHHHHHHhcCCChHHHHHHHH--HHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 433 GFGSY-G--VVWRALLSASGACSDLDVARISAA--EVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 433 ~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
...|+ + ....++++.+.+.|++++|.+.|+ .+++..| ++..+..++.++.+.|+.++|.++|++..
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12222 2 344566666666666666666666 3445556 34445566666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-13 Score=125.54 Aligned_cols=258 Identities=10% Similarity=0.023 Sum_probs=182.2
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHH
Q 048766 243 VNRNRVPEALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321 (525)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 321 (525)
...|+++.|.+.+.+..+. .|++ ..+.....+....|+.+.+..++....+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578888888888776654 3443 334455667777888888888888887655333334445567888889999999
Q ss_pred HHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHH----HHHHHHcCCCC---CcchHHH
Q 048766 322 DSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL----NVLAACSHTDI---PFDKVSE 391 (525)
Q Consensus 322 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~---~~~~a~~ 391 (525)
.+.++.+. +.+...+..+...+...|++++|.+.+..+.+.+ .. +...+. .........+. ..+...+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-LF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99998886 3466788888999999999999999999999876 33 322221 11111122222 0334444
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhH---HHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVV---WRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
.++...+ ..+.++..+..++..+...|++++|.+.+++. ...|+... ...........++.+.+++.+++.++.
T Consensus 251 ~~~~~p~--~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPR--HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCH--HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 4443322 12347888999999999999999999999987 54555442 122222234458899999999999999
Q ss_pred cCCCh--hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 468 EGDSD--YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 468 ~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
.|+|+ .....+++++.+.|+|++|.++|++.......|+
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 99999 8899999999999999999999995444333333
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-14 Score=130.43 Aligned_cols=275 Identities=13% Similarity=0.080 Sum_probs=221.0
Q ss_pred CChHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhcCCC------CCcccHHHHHHHHHhcCChhHHHHH
Q 048766 184 GNLELAFGFLHRLPN--P-DTISYNEVINGIAQFGDIEDAIMILSSMPS------PNSSSWNSILTGYVNRNRVPEALHL 254 (525)
Q Consensus 184 ~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (525)
-+..+|+..|..++. + ...+...+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346788888888632 2 234566788899999999999999998874 466778888776543 333444
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh
Q 048766 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV 334 (525)
Q Consensus 255 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 334 (525)
+-+-+-.--+-.+.+|.++..+|.-+++.+.|+..|++..+.+ +....+|+.+..-+....++|.|...|+.....|+.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 4332222235577899999999999999999999999998876 457889999999999999999999999999877766
Q ss_pred HH---HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHH
Q 048766 335 TW---NAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHC 409 (525)
Q Consensus 335 ~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 409 (525)
.| ..++..|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+ .++|+++++++.. ++| |+..-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~---ld~kn~l~~ 560 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKR-KDKALQLYEKAIH---LDPKNPLCK 560 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHh---cCCCCchhH
Confidence 55 4567889999999999999999999 7784 5666777778888898 9999999999984 455 55555
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
..-+..+...+++++|+..++++ ...|+ ...+..++..|.+.|+.+.|+..|.-+..++|.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 66678888999999999999998 44454 667888899999999999999999999999984
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-15 Score=134.37 Aligned_cols=251 Identities=14% Similarity=0.129 Sum_probs=109.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcC-CC----CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc
Q 048766 206 EVINGIAQFGDIEDAIMILSSM-PS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL 280 (525)
Q Consensus 206 ~l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 280 (525)
.+...+.+.|++++|.+++++. .. .+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3455556666666666666432 11 23444555566666777888888888887765422 44555566655 677
Q ss_pred cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHhcCChhHHHHH
Q 048766 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-----RKNLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 281 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+++++|..++....+.. +++..+..++..+.+.++++.+.++++.+. +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887776665443 455566677788888999999998888864 34667888889999999999999999
Q ss_pred HHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C
Q 048766 356 FEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G 433 (525)
Q Consensus 356 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 433 (525)
+++..+ ..|+ ......++..+...|+ .+++.++++...+. .+.++..+..++.+|...|++++|+..+++. .
T Consensus 169 ~~~al~---~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 169 YRKALE---LDPDDPDARNALAWLLIDMGD-YDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHH---H-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHH---cCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999 6775 6778889999999998 99999999888764 2567788899999999999999999999997 3
Q ss_pred -CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 434 -FGSYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 434 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
.+.|+.....++.++...|+.++|.++.+++++
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 344677788899999999999999999998875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-12 Score=108.90 Aligned_cols=298 Identities=13% Similarity=0.096 Sum_probs=191.4
Q ss_pred CCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHhcCCC-CCcc------cHHHHHHHHHhcCChhHHH
Q 048766 183 NGNLELAFGFLHRLPNPDT---ISYNEVINGIAQFGDIEDAIMILSSMPS-PNSS------SWNSILTGYVNRNRVPEAL 252 (525)
Q Consensus 183 ~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a~ 252 (525)
.++.++|.++|-+|.+.|+ .+..+|.+.|.+.|.+|.|+++.+.+.+ ||.. ....|..-|...|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445555555555533322 2334566667777777777777666653 3322 1233455566677777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Q 048766 253 HLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKN 332 (525)
Q Consensus 253 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 332 (525)
++|..+.+.| ..-...... |+..|....+|++|+.+-+++.+.+
T Consensus 128 ~~f~~L~de~-efa~~Alqq-----------------------------------Ll~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQ-----------------------------------LLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHhcch-hhhHHHHHH-----------------------------------HHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 7777766543 122233333 4445555555555555544443211
Q ss_pred H--------hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh-HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC
Q 048766 333 L--------VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV-TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403 (525)
Q Consensus 333 ~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 403 (525)
. ..|.-+...+....+.+.|..++.+..+ ..|+.. .-..+.......|+ ++.|.+.++.+.+. +..
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQ-n~~ 246 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQ-NPE 246 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccc-hHHHHHHHHHHHHh-ChH
Confidence 1 1344455556667788888888888887 455433 33344556677777 88888888888754 323
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
--+.+...|..+|...|+.++...++.++ ...+.......+........-.+.|...+.+-+...| +...+..|+...
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~ 325 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhh
Confidence 33666778888888888888888888876 4445555555555555556667888888888888899 666677777665
Q ss_pred hh---ccChhHHHHHHHHHHHcCCccCCcccEEEecceecccc
Q 048766 483 TS---HGNWDVASVMRNFMRERGLRKEAGCSWIEVENVAAHSS 522 (525)
Q Consensus 483 ~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (525)
.. .|++.+-+..+.+|+...++..|....-.++...|+|.
T Consensus 326 l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred hccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 33 46688889999999999999999888888888888764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-11 Score=107.25 Aligned_cols=410 Identities=12% Similarity=0.027 Sum_probs=249.7
Q ss_pred HHHHHHHccCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHcccC
Q 048766 43 ALMGFYRKINSLADAHKMFVEIPQ--PS-VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADA-YSFTSALAACGQLG 118 (525)
Q Consensus 43 ~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~ 118 (525)
....-|-+.|++++|++.|.+..+ |+ +..|.....+|...|+|+++.+--.+..+ +.|+- ..+..-.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 344556677888888888888776 66 66777777788888888888877777766 34542 23444445555667
Q ss_pred ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC
Q 048766 119 SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN 198 (525)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 198 (525)
++++|..=....-=.+--.+..+--.+=+.+-+.|. ..+.+-+.+=..| +..-...+..|...=..+--.. +..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p-~lPS~~fi~syf~sF~~~~~~~----~~~ 271 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPP-VLPSATFIASYFGSFHADPKPL----FDN 271 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCC-CCCcHHHHHHHHhhcccccccc----ccC
Confidence 776665433222111111111111111111111111 1122222210111 1111122222221111000000 000
Q ss_pred CCcchHHHHHHHHHh-----cCChHHHHHHHhcCC-------CCC---------cccHHHHHHHHHhcCChhHHHHHHHH
Q 048766 199 PDTISYNEVINGIAQ-----FGDIEDAIMILSSMP-------SPN---------SSSWNSILTGYVNRNRVPEALHLFGE 257 (525)
Q Consensus 199 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~-------~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~ 257 (525)
+.......+..++.. ...+..|...+.+-. ..+ ..+.......+.-.|+.-.|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 111111112111111 012233333322211 111 11122222335567899999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC---CHh
Q 048766 258 MQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK---NLV 334 (525)
Q Consensus 258 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 334 (525)
.+.....++. .|.-+..+|....+.++....|....+.+ +.++.+|..-..++.-.++++.|..=|++.... +..
T Consensus 352 ~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 352 AIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 9887433332 27777778999999999999999999887 667777777778888889999999999998743 455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---------
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--------- 405 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 405 (525)
.|-.+..+..+.+++++++..|++.++. ++.-+..|+.....+...++ ++.|.+.|+..++. .|+
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~L---E~~~~~~~v~~~ 503 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIEL---EPREHLIIVNAA 503 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHhh---ccccccccccch
Confidence 6777777777889999999999999984 34457889999999999999 99999999998853 343
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
+.+...++..-.+ +++..|.+++++. ...|. ...+..|...-.+.|+.++|+++|++...+.-
T Consensus 504 plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 504 PLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333333334 8999999999987 55665 56788899999999999999999999987653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-11 Score=115.34 Aligned_cols=455 Identities=16% Similarity=0.104 Sum_probs=266.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048766 24 QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ----PSVVSWNSLISGYVQSGKYRKALNLFVELERSE 99 (525)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 99 (525)
.++..+...|+.|+..+|.++|.-||..|+++.|- +|.-|.- .+...++.++.+..++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45666677778888888888888888888887777 6665543 34456777777766777666554
Q ss_pred CCCCHhhHHHHHHHHcccCChHH---HHHHHHHHH----Hccc--------------CCCcchhhHHHHHHHhcCCHHHH
Q 048766 100 IYADAYSFTSALAACGQLGSLQL---GMAIHSKIV----KYSL--------------ERGVVIANCLIDMYGKCGSVEDA 158 (525)
Q Consensus 100 ~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a 158 (525)
.|.+.||..|+.+|...||+.. .++.+.... ..|+ +.....-...+......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777544 222111111 1111 11111123344555566777777
Q ss_pred HHHHhhccCC--ChhhHHHHHHHHHhCCC-hHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHhcCCCC----
Q 048766 159 IGVFGEMIDK--DIISWNSVIAASARNGN-LELAFGFLHRLPN-PDTISYNEVINGIAQFGDIEDAIMILSSMPSP---- 230 (525)
Q Consensus 159 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 230 (525)
++++..++.. +. +....++-+..... +++-..+.+.... ++..+|...+..-...|+++.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 7777666442 11 11112444433333 3444444444443 88888888888888899999999999888752
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHH-----------HHHHHH-----
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGML-----------IHSCVI----- 294 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-----------~~~~~~----- 294 (525)
...-|-.++-+ .++...+..+++-|.+.|+.|+..|+...+..+...|....+.. ++..+.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 22333444433 77888888888888889999999998888777776443221110 011110
Q ss_pred --------------------HhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-------CHhHHHHHHHHHHhcC
Q 048766 295 --------------------KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-------NLVTWNAMITGYARNG 347 (525)
Q Consensus 295 --------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~ 347 (525)
-.|+.....+|..... ...+|.-+..+++...+..| ++..|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 0122222222222222 22256666666666655422 3344544444443211
Q ss_pred ----------------------ChhHHHHHHHHHhhCCCCCCCHh----------------------------HHHHHHH
Q 048766 348 ----------------------DLTKVIELFEQLKTVRDLQPDSV----------------------------TFLNVLA 377 (525)
Q Consensus 348 ----------------------~~~~a~~~~~~~~~~~~~~p~~~----------------------------~~~~l~~ 377 (525)
+..+..+.... ..||.. .-+.++.
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~------lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN------LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH------hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 11111111111 122211 1122333
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhC-----CCCchhHHHHHHHHHhcCC
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG-----FGSYGVVWRALLSASGACS 452 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 452 (525)
.|+...+ ..+++..-+..... -+ +..|..|++.+......+.|..+..+.. ..-+..-+..+.....+.+
T Consensus 468 ~l~se~n-~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 468 TLNSEYN-KLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHH-HHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 3333333 33333332222211 11 2567888999999999999999999872 2233445566777788888
Q ss_pred ChHHHHHHHHHHHhhc---CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 453 DLDVARISAAEVIKLE---GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
....+..++++..+.- |.-...+..+.......|+.+...++.+-+...|+..+
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et 599 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET 599 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc
Confidence 8999999998888743 44456677777888889999999999999999888763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-11 Score=106.66 Aligned_cols=284 Identities=15% Similarity=0.102 Sum_probs=146.0
Q ss_pred CCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCCC----CcccHHHHHHHHHhcCChhHHHHHH
Q 048766 183 NGNLELAFGFLHRLPN---PDTISYNEVINGIAQFGDIEDAIMILSSMPSP----NSSSWNSILTGYVNRNRVPEALHLF 255 (525)
Q Consensus 183 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (525)
.|++.+|+++..+..+ .....|..-+.+--..|+.+.+-+++.+..++ +....-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5666666666655522 12222333334444455555555555554431 2222333344445555555555555
Q ss_pred HHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhH
Q 048766 256 GEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335 (525)
Q Consensus 256 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 335 (525)
+++.+.+ +-.+........+|.+.|++.....++..+.+.+.-.+...-.. ...+
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~a 231 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQA 231 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHHH
Confidence 5555442 22333444444455555555555555555554443322211000 1124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (525)
|+.+++-....+..+.-...|+..... .+-++..-..++.-+...|. .++|.++.++..+. +.+|+. ..+ -.
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~-~~~A~~~i~~~Lk~-~~D~~L---~~~-~~ 303 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLIRLGD-HDEAQEIIEDALKR-QWDPRL---CRL-IP 303 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHh-ccChhH---HHH-Hh
Confidence 555555555445555545555554442 23344445555666666666 66666666666554 444431 111 12
Q ss_pred HhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHH
Q 048766 416 MGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 493 (525)
..+.++...-++..++. ..+.++..+.+|+..|.+.+.+.+|...|+.+++..| +...|..++.++.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHH
Confidence 23445555555554443 2222345666777777777777777777777777777 66777777777777777777777
Q ss_pred HHHHHHH
Q 048766 494 MRNFMRE 500 (525)
Q Consensus 494 ~~~~~~~ 500 (525)
.+++..-
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 7766653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-11 Score=103.77 Aligned_cols=282 Identities=13% Similarity=0.058 Sum_probs=220.7
Q ss_pred hcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHH
Q 048766 151 KCGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMI 223 (525)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 223 (525)
..|++..|++...+-.+. ....|..-+.+--+.|+.+.+-.++.+.. +++..+..+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 369999999999887553 33456666677888999999999999982 44555677788889999999999888
Q ss_pred HhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCc
Q 048766 224 LSSMP---SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA 300 (525)
Q Consensus 224 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 300 (525)
.+++. ..++.......++|.+.|++...+.++.++.+.|.-.++..- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 77765 356677888999999999999999999999999865554321 11
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 377 (525)
...++..+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++.++..+++ .+|+ ....-
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~----L~~~~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPR----LCRLI 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChh----HHHHH
Confidence 23345555555555555555666777776 4467777778888899999999999999998877 6666 23334
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDV 456 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 456 (525)
.+.+.++ ...-++..+...+.++ .++..+.+|+..|.+.+.+.+|...|+.. +..|+...|..+..++.+.|+..+
T Consensus 303 ~~l~~~d-~~~l~k~~e~~l~~h~--~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 303 PRLRPGD-PEPLIKAAEKWLKQHP--EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred hhcCCCC-chHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 5666677 7777788777776433 34578899999999999999999999986 888999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 048766 457 ARISAAEVIKLE 468 (525)
Q Consensus 457 A~~~~~~~~~~~ 468 (525)
|.++.++.+.+-
T Consensus 380 A~~~r~e~L~~~ 391 (400)
T COG3071 380 AEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHHh
Confidence 999999998643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-12 Score=110.77 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=162.5
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
.....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 345566777888888899999988888775 3345677888888999999999999999998843 33456677788
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCCh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDL 454 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 454 (525)
..+...|+ +++|.+.++++............+..++..+...|++++|...+++. ...| +...+..+...+...|++
T Consensus 107 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGK-YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHccc-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 88888998 99999999998764122234566778889999999999999999987 3333 456778888999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
++|...++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999998888899999999999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-09 Score=99.54 Aligned_cols=451 Identities=13% Similarity=0.070 Sum_probs=243.6
Q ss_pred HHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHH--HhcCChH
Q 048766 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGY--VQSGKYR 86 (525)
Q Consensus 9 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~ 86 (525)
=+.-+...|++++|.+....++..+ +-+...+.+-+-++.+.+++++|+.+.+.-........-.+=.+| .+.+..+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 3445566677777777777777665 555666666666667777777777666544321111111122333 3567777
Q ss_pred HHHHHHHHHHhcCCCCC-HhhHHHHHHHHcccCChHHHHHHHHHHHHcccCC-CcchhhHHHHHHHhcCCHHHHHHHHhh
Q 048766 87 KALNLFVELERSEIYAD-AYSFTSALAACGQLGSLQLGMAIHSKIVKYSLER-GVVIANCLIDMYGKCGSVEDAIGVFGE 164 (525)
Q Consensus 87 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (525)
+|+..++ |..++ ..+...-...|.+.|++++|..+|..+.+.+.+. +...-..++.+ +-.-.+. +.+.
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~ 166 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQS 166 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHh
Confidence 7777766 22222 2244444555667777777777777776654221 11111111111 1111111 2233
Q ss_pred ccCCChhhHHHH---HHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc-ccHHHHHH
Q 048766 165 MIDKDIISWNSV---IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS-SSWNSILT 240 (525)
Q Consensus 165 ~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~ 240 (525)
.......+|..+ ...+...|++.+|+++++...+- -...+ ..++.. -+.+ +... .+-..+..
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~-------~~e~l-~~~d~~-eEei-----e~el~~IrvQlay 232 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI-------CREKL-EDEDTN-EEEI-----EEELNPIRVQLAY 232 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-------HHHhh-cccccc-hhhH-----HHHHHHHHHHHHH
Confidence 322222233332 22344455555555555543000 00000 000000 0000 0000 11234555
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH---HhccccchHH--HH------------HHHHHHHHhCCCchHH
Q 048766 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS---GIAGLSALTW--GM------------LIHSCVIKQGLDASIV 303 (525)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~---~~~~~~~~~~--a~------------~~~~~~~~~~~~~~~~ 303 (525)
.+...|+.++|..++...+... ++|......... +...-.++.. .. .....+.... .-...
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~ 310 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIY 310 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHH
Confidence 6777899999999888888774 444433222221 2221111111 11 1111111110 11122
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccCCC-HhHHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHH
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLCRKN-LVTWNAMITGYA--RNGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAA 378 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~ 378 (525)
.-+.++.+| .+..+.+.++-..++... ...+.+++.... +...+..+.+++....+ -.|.. ......+..
T Consensus 311 ~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~---~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 311 RNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD---GHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---cCCchhHHHHHHHHHH
Confidence 222333333 466677777777776433 334555544332 23357888888888777 35543 455566667
Q ss_pred HcCCCCCcchHHHHHH--------HhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-----CCCCc----hhHH
Q 048766 379 CSHTDIPFDKVSEYFE--------SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-----GFGSY----GVVW 441 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~ 441 (525)
....|+ ++.|.+++. .+. .+...+.+...+...|.+.++.+.|..++.+. ...+. ...+
T Consensus 386 ~is~gn-~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 386 KISQGN-PEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHhcCC-HHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 788898 999999998 443 33445667778888999999888888888765 11222 2234
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
..++..-.+.|+-++|...++++++.+|++..+...+..+|.+. +.+.|..+-.
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 44444556789999999999999999999999999999999876 5667766544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-11 Score=100.79 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=138.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCc------chhhHHHHHHHhcCCH
Q 048766 82 SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV------VIANCLIDMYGKCGSV 155 (525)
Q Consensus 82 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 155 (525)
+++.++|+++|-+|.+.. +-+..+..+|.+.|.+.|..+.|..+...+.++ ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 346666666666666522 223334445555566666666666666666543 221 2233455556666666
Q ss_pred HHHHHHHhhccCCC---hhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 048766 156 EDAIGVFGEMIDKD---IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNS 232 (525)
Q Consensus 156 ~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 232 (525)
|.|+.+|..+.+.+ ..+...|+..|-...+|++|++.-+++...+...++.-|.-
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq---------------------- 181 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ---------------------- 181 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH----------------------
Confidence 66666666665532 22344455555555555555555444422222222211111
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (525)
.|--+...+....+.+.|..++++..+.+ +-....-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|
T Consensus 182 -fyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 182 -FYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred -HHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 13334445555667777777777766652 1122222233445555666666666666666665555555556666666
Q ss_pred HcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC
Q 048766 313 SKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH 381 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (525)
.+.|+.++....+..+. .++...-..+...-....-.+.|...+.+-.. -+|+...+..++..-..
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhc
Confidence 66666666666555554 23333333333333333344445444444444 35666666666655443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-11 Score=116.39 Aligned_cols=271 Identities=12% Similarity=0.021 Sum_probs=164.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCC-Cc-hHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSK--DVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-DA-SIVVASALL 309 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~ 309 (525)
.|..||..+......+.|..+.++.... .+..|..-+..+.+.+.+.+....+..++.++.+.-. .+ ...++-.++
T Consensus 493 ~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~l 572 (1088)
T KOG4318|consen 493 LYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLL 572 (1088)
T ss_pred HHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHH
Confidence 3678888888889999999999888654 3556777788889999999999999999988877432 22 234455566
Q ss_pred HHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHH-----------------HHHhhCCCCCCCHh--
Q 048766 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF-----------------EQLKTVRDLQPDSV-- 370 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-----------------~~~~~~~~~~p~~~-- 370 (525)
+.....|+.+...++++-+..-+...-.-++....+.++...+.+.. -++...+ -.-+..
T Consensus 573 ns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke-~td~~qk~ 651 (1088)
T KOG4318|consen 573 NSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE-TTDSPQKT 651 (1088)
T ss_pred hhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh-ccccHHHH
Confidence 67777888888877777664221111011122222333333333333 3332221 111110
Q ss_pred -HHHHHHHHHcCCCCCcchHHHHHHHhh-----------hhhCCCC---------ChhHHHHHHHHHhccCChHHHHHHH
Q 048766 371 -TFLNVLAACSHTDIPFDKVSEYFESMT-----------KDYGIKP---------TVEHCCSMIRLMGQKGEVWRAQRMI 429 (525)
Q Consensus 371 -~~~~l~~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (525)
-+..-+..|.+.|. +..+.++.+--- ....+.| +......|+..|.+.|+++.|..+|
T Consensus 652 mDls~~iq~f~k~g~-~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glw 730 (1088)
T KOG4318|consen 652 MDLSIPIQKFEKLGS-CVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLW 730 (1088)
T ss_pred HhhcchhHHHHhccc-ccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHH
Confidence 01111122444454 444444432100 0000001 1112234777899999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHhc---CCChHHHHHHHHHHHhhcCCChh---HHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 430 RELGFGSYGVVWRALLSASGA---CSDLDVARISAAEVIKLEGDSDY---VYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++...|.......++..+.+ .-|..++....+++.++.|..+. .|...+....+....+.|.+.+.+..+..+
T Consensus 731 nK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 731 NKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred hhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 999877888777777666644 33788888888888887754443 355555666666777789999999888755
Q ss_pred ccC
Q 048766 504 RKE 506 (525)
Q Consensus 504 ~~~ 506 (525)
...
T Consensus 811 v~t 813 (1088)
T KOG4318|consen 811 VST 813 (1088)
T ss_pred CCc
Confidence 443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-09 Score=98.21 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=104.6
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHh-CCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKS-GFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (525)
|...+.....+|++......|++.+.. .+.-....|...+....+.+-++.+++++++....++..-+-.|..++..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 445556667778888888888876533 2333345677777777777888888888888887666677788888888888
Q ss_pred hHHHHHHHHHHHhcC------CCCCHhhHHHHHHHHcccCCh---HHHHHHHHHHHHcccCCC--cchhhHHHHHHHhcC
Q 048766 85 YRKALNLFVELERSE------IYADAYSFTSALAACGQLGSL---QLGMAIHSKIVKYSLERG--VVIANCLIDMYGKCG 153 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 153 (525)
+++|.+.+....... .+.+...|.-+-...++..+. -....+++.+... -+| ...|+.|.+.|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 888888888775431 233444555544444433222 2233344443332 122 346788888888888
Q ss_pred CHHHHHHHHhhccC
Q 048766 154 SVEDAIGVFGEMID 167 (525)
Q Consensus 154 ~~~~a~~~~~~~~~ 167 (525)
+++.|..+|++...
T Consensus 263 ~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQ 276 (835)
T ss_pred hhHHHHHHHHHHHH
Confidence 88888888877654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-10 Score=104.49 Aligned_cols=366 Identities=14% Similarity=0.062 Sum_probs=247.0
Q ss_pred HcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHHHhcC--CC--C-Ccch
Q 048766 132 KYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGFLHRL--PN--P-DTIS 203 (525)
Q Consensus 132 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~-~~~~ 203 (525)
...+.-+..+|..|.-+....|+++.+-+.|++...- ....|+.+...+...|....|..+++.. .. | +...
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3345567888888888899999999999999988653 4567999999999999999999999887 22 3 3333
Q ss_pred HHHHHHHHH-hcCChHHHHHHHhcCCC--------CCcccHHHHHHHHHhc-----------CChhHHHHHHHHHhhCC-
Q 048766 204 YNEVINGIA-QFGDIEDAIMILSSMPS--------PNSSSWNSILTGYVNR-----------NRVPEALHLFGEMQSKD- 262 (525)
Q Consensus 204 ~~~l~~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~- 262 (525)
+...-..|. +.+.++++.++-.++.. -....|..+.-+|... ....++++.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 443334443 45666666665554432 2333444444444321 22456778888877653
Q ss_pred CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC---CC-------
Q 048766 263 VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR---KN------- 332 (525)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~------- 332 (525)
-.|+..-| +.--++-.++++.|.+..++..+.+-..+...+..+.-.+.-.+++..|+.+.+.... .|
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 23333333 3334566788999999999998887677888888888888888999999888876641 11
Q ss_pred -------------HhHHHHHHHHHH-----------------------hcCChhHHHHHHHHHhh--------CC-----
Q 048766 333 -------------LVTWNAMITGYA-----------------------RNGDLTKVIELFEQLKT--------VR----- 363 (525)
Q Consensus 333 -------------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~--------~~----- 363 (525)
..|...++..+- ..++..++.+....+.. .|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 112222221111 01111222221111100 00
Q ss_pred ---CCCC--CH------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 364 ---DLQP--DS------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 364 ---~~~p--~~------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
.+.| +. ..+......+.+.+. .++|..++.+..+ +.| .+..|...+..+...|.+++|.+.|..
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~-~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN-DDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0111 11 122234445566666 7888888888763 344 567777778888999999999999987
Q ss_pred h-CCCCc-hhHHHHHHHHHhcCCChHHHHH--HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 432 L-GFGSY-GVVWRALLSASGACSDLDVARI--SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 432 ~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
. ..+|+ ..+..+++..+.+.|+..-|.. ++..+++.+|.++.+|..|+.++.+.|+.++|...|+-..+...
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 6 55666 5678889999999998888877 99999999999999999999999999999999999998877544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-10 Score=103.75 Aligned_cols=279 Identities=8% Similarity=-0.014 Sum_probs=210.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 200 DTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
+.........-+...+++.+..++++.+.+ ++...+..-|.++...|+..+-..+=.++.+. .|-.+.+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 444555556667778888888888888775 44556666777888888888877777777765 35567788888888
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
|...|+.++|.+++.+....+ +.-...|-.+...|.-.|..|.|+..+.... +.....+--+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 888899999999998887665 2334567788888999999999988887664 222222333455678889999999
Q ss_pred HHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh-CCC----CChhHHHHHHHHHhccCChHHHHH
Q 048766 354 ELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY-GIK----PTVEHCCSMIRLMGQKGEVWRAQR 427 (525)
Q Consensus 354 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~ 427 (525)
+.|.+... +.|+ +...+-+.-.....+. +.+|..+|+.....- .+. -...+++.|+.+|.+.+.+++|+.
T Consensus 401 ~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 401 KFFKQALA---IAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHh---cCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999988 6774 5556555555566677 999999998876311 011 134568899999999999999999
Q ss_pred HHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 428 MIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 428 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
.++.. -.+.+..++.+++-.|...|+++.|++.|.+++.+.|++..+-..|..+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99986 4455678888888899999999999999999999999887776666655443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-09 Score=96.39 Aligned_cols=275 Identities=10% Similarity=-0.032 Sum_probs=204.3
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCccc---HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 048766 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS---WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273 (525)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 273 (525)
.+.+......+...+...|+.++|+..|++..-.|+.+ .......+.+.|+.+....+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 44567778888888888899999988888776433332 2223344567788888877777766542 2233334444
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChh
Q 048766 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLT 350 (525)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 350 (525)
........+++.|..+-++.++.+ +.+...+-.-..++...|+++.|.-.|+... +-+..+|..|+..|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 445556778888888888887766 4556666666778888999999999998876 347789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCHhHHHHHH-HHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHH
Q 048766 351 KVIELFEQLKTVRDLQPDSVTFLNVL-AACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRM 428 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 428 (525)
+|.-+-+...+. +..+..+...+. ..|.-....-++|.+++++.. .+.|+ ......+.+.+...|..++++.+
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999888877662 334556655442 334333222588999998877 45675 45667788899999999999999
Q ss_pred HHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 429 IREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 429 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
++.. ...||......|+..+...+.+++|+..|..++.++|.+..+...|
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9986 6778888999999999999999999999999999999776555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-12 Score=107.07 Aligned_cols=226 Identities=11% Similarity=0.043 Sum_probs=160.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
+.+.++|.+.|.+.+|.+.|+..+.. .|-+.||..|- ..|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLs-----------------------------------kvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLS-----------------------------------KVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHH-----------------------------------HHHHHh
Confidence 45666777777777777777766654 33334444444 444455
Q ss_pred CCHHHHHHHHHhccC--C-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHH
Q 048766 316 GQVEIADSMFRSLCR--K-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSE 391 (525)
Q Consensus 316 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~ 391 (525)
.+++.|..++.+..+ | |+.....+.+.+-..++.++|.++|+...+ ..| +......+...|...++ ++-|+.
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~-PE~Alr 345 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNN-PEMALR 345 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCC-hHHHHH
Confidence 555555555544431 2 222333345556666777888888888777 344 45555666667777777 888888
Q ss_pred HHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh---CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 392 YFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSY--GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
+|+++... |+ .++..|..+.-.|.-.++++-++.-|++. -..|+ ..+|..+.......||+..|.++|+-++.
T Consensus 346 yYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 346 YYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 88888765 43 45667777777777788888888887775 12233 57899999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 467 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.+|++..++++|+..-.+.|++++|..+++......+.
T Consensus 424 ~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 424 SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99999999999999999999999999999988765543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-10 Score=96.11 Aligned_cols=414 Identities=13% Similarity=0.056 Sum_probs=204.3
Q ss_pred HHHHHccCCHHHHHHHHhcCCC---CCcccHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCCh
Q 048766 45 MGFYRKINSLADAHKMFVEIPQ---PSVVSWN-SLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSL 120 (525)
Q Consensus 45 l~~~~~~~~~~~a~~~~~~~~~---~~~~~~~-~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 120 (525)
+.-+....++..|+.+++--.. ......+ .+...+.+.|++++|...+..+.+.. .|+...+..|..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 3444556677777777654432 1111222 23344556677777777777666543 45555555555555556666
Q ss_pred HHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC--CC
Q 048766 121 QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL--PN 198 (525)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~ 198 (525)
.+|.++-... +.++-....|+..-.+.|+-++-..+-+.+.+ ...---++.......-++++|++++++. ..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666655432 22333334445555556665555444443322 2233334445555555677777777776 33
Q ss_pred CCcchHHH-HHHHHHhcCChHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 048766 199 PDTISYNE-VINGIAQFGDIEDAIMILSSMPS--P-NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274 (525)
Q Consensus 199 ~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 274 (525)
|.....|. +.-+|.+..-++-+.+++.-..+ | ++...|..+....+.=+-..|.+-.+++.+.+-..-+.. .-++
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~-~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI-EYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH-HHHH
Confidence 43333333 23345555555555555443331 2 333344444333333333334444444444321110000 0000
Q ss_pred H-HhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh-------------------
Q 048766 275 S-GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV------------------- 334 (525)
Q Consensus 275 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------- 334 (525)
+ -+.--.+-+.|.+++--+.+. . +..-..|+-.|.+.+++.+|..+.+++.+..+.
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcH
Confidence 0 000001112222222111111 0 111122333344555555555555544332222
Q ss_pred ------------------------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHH
Q 048766 335 ------------------------TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 335 ------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
--.++...+.-..++++++..+.....-- ..|...-..+..+.+..|. +.+|.
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF--~NdD~Fn~N~AQAk~atgn-y~eaE 413 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF--TNDDDFNLNLAQAKLATGN-YVEAE 413 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhHHHHHHHHhcC-hHHHH
Confidence 22334444444445555555555555421 2222222245667777777 88888
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhH-HHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV-WRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
++|-.+... .++.+..-...|.+.|.+.++++-|+.++-++..+.+..+ +..+..-|.+.+.+=-|-+.|+.+-.++|
T Consensus 414 elf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 414 ELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 888777632 3333333345567788888888888888877754444333 34445677888888888888888877887
Q ss_pred CChhHH
Q 048766 470 DSDYVY 475 (525)
Q Consensus 470 ~~~~~~ 475 (525)
+|+.|
T Consensus 493 -~pEnW 497 (557)
T KOG3785|consen 493 -TPENW 497 (557)
T ss_pred -Ccccc
Confidence 45444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-11 Score=116.96 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=181.1
Q ss_pred ChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHhc---------cccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 247 RVPEALHLFGEMQSKDVPMD-EYTFSTMLSGIA---------GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
.+++|...|++..+. .|+ ...+..+..++. ..++.++|...++++.+.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467899999998875 444 445555544332 3355889999999999887 667788888888999999
Q ss_pred CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh-HHHHHHHHHcCCCCCcchHHHH
Q 048766 317 QVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV-TFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 317 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
++++|...|++.. +.+...+..+...+...|++++|+..+++..+ ..|+.. .+..++..+...|+ +++|.+.
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~-~eeA~~~ 428 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTG-IDDAIRL 428 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccC-HHHHHHH
Confidence 9999999999986 33456788889999999999999999999999 667543 33344555666788 9999999
Q ss_pred HHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchh-HHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 393 FESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGV-VWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 393 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
++++.+. ..| ++..+..+..+|...|++++|...++++ ...|+.. .+..+...+...| ++|...++++++..-
T Consensus 429 ~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9998753 234 4556778889999999999999999987 4455543 4455556667777 478888888776442
Q ss_pred CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..+.....+..+|.-.|+.+.+... +++.+.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 2222222377778888888888777 77776644
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-08 Score=89.41 Aligned_cols=471 Identities=13% Similarity=0.142 Sum_probs=277.5
Q ss_pred HHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC----------CCcccHHHH
Q 048766 6 LFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ----------PSVVSWNSL 75 (525)
Q Consensus 6 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~l 75 (525)
|...+......|-++.+..++.+.++. ++..-+--+..+++.+++++|.+.+..+.. .+-..|..+
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 444555555566677888888887765 344466778888999999999999887764 233456666
Q ss_pred HHHHHhcCChHH---HHHHHHHHHhcCCCCCH--hhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHH
Q 048766 76 ISGYVQSGKYRK---ALNLFVELERSEIYADA--YSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYG 150 (525)
Q Consensus 76 l~~~~~~~~~~~---A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (525)
-...++..+.-. .-.+++.+.. .-+|. ..|..|..-|.+.|.+++|..++++.++.- .++.-++.+.+.|+
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 665555443322 2334444332 23443 467888888899999999999998887652 33444444444444
Q ss_pred hcC----------------------CHHHHHHHHhhccCC---------------ChhhHHHHHHHHHhCCChHHHHHHH
Q 048766 151 KCG----------------------SVEDAIGVFGEMIDK---------------DIISWNSVIAASARNGNLELAFGFL 193 (525)
Q Consensus 151 ~~g----------------------~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~ 193 (525)
.-. +++-.+.-|+.+... ++..|..-+. +..|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 221 122223333333221 2223333222 2245566666666
Q ss_pred hcC---CCC------CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCccc-------HHHHHHHHHhcCChhHHHHHHHH
Q 048766 194 HRL---PNP------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSS-------WNSILTGYVNRNRVPEALHLFGE 257 (525)
Q Consensus 194 ~~~---~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~ 257 (525)
.+. .+| -...|..+...|-..|+++.|..+|++..+.+-.+ |-.....-.+..+++.|+++++.
T Consensus 371 teAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 371 TEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred HHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 665 222 23467888889999999999999999988644444 44444444567788899998877
Q ss_pred HhhCCCC-----------C------CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 258 MQSKDVP-----------M------DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 258 m~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
....--+ + +...|...+..-...|-++....+|+.+.+..+.....+ ......+....-+++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEE 529 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHH
Confidence 6542111 1 123344455555567788888889999988775433333 233334556677888
Q ss_pred HHHHHHhcc----CCCHh-HHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH--HcCCCCCcchHH
Q 048766 321 ADSMFRSLC----RKNLV-TWNAMITGYAR---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA--CSHTDIPFDKVS 390 (525)
Q Consensus 321 A~~~~~~~~----~~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~~a~ 390 (525)
+.+++++-. .|++. .|+..+.-+.+ ....+.|..+|++..+ | .+|...-+..++.+ --.-|. ...|+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~-Cpp~~aKtiyLlYA~lEEe~GL-ar~am 606 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G-CPPEHAKTIYLLYAKLEEEHGL-ARHAM 606 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 999998875 34443 67776655543 3468999999999998 5 56653322222222 223466 77888
Q ss_pred HHHHHhhhhhCCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchh---HHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 391 EYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGV---VWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
.+++++.. ++++. ...|+..|.--...=-+.....++++. ..-|+.. ....+...-.+.|..+.|..+|...
T Consensus 607 siyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 607 SIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 88888754 55543 344555443222111122223333332 1123322 2233444455678888888888777
Q ss_pred Hhhc-CC-ChhHHHHHHHHHhhccChhHHH
Q 048766 465 IKLE-GD-SDYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 465 ~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~ 492 (525)
-+.- |. +...|...=..-.+.|+-+.-.
T Consensus 685 sq~~dPr~~~~fW~twk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 685 SQICDPRVTTEFWDTWKEFEVRHGNEDTYK 714 (835)
T ss_pred hhcCCCcCChHHHHHHHHHHHhcCCHHHHH
Confidence 7654 42 3445666666667777744433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-11 Score=98.18 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSM 412 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 412 (525)
+...|.-.|...|+...|.+-+++..+ ..|+ ..++..+...|.+.|. .+.|.+.|+... .+.| +-.+.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge-~~~A~e~YrkAl---sl~p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGE-NDLADESYRKAL---SLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCC-hhhHHHHHHHHH---hcCCCccchhhhh
Confidence 344566778888888888888888888 5564 5677777888888888 888888888877 3455 46677888
Q ss_pred HHHHhccCChHHHHHHHHHhCCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 413 IRLMGQKGEVWRAQRMIRELGFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
+..+|..|++++|...|++.-..|. ..+|..++....+.|+++.|...|++.++.+|+.+.+...++..+...|++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 8888888888888888888622333 456777777778888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHcCC
Q 048766 489 DVASVMRNFMRERGL 503 (525)
Q Consensus 489 ~~A~~~~~~~~~~~~ 503 (525)
.+|..++++....+.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 888888888877766
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.4e-11 Score=105.87 Aligned_cols=229 Identities=9% Similarity=-0.094 Sum_probs=124.5
Q ss_pred hcCChhHHHHHHHHHhhCC-CCCC--HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 244 NRNRVPEALHLFGEMQSKD-VPMD--EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
..+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|....+.. +.+...+..+...+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3455566777776666532 1222 2345555556667777777777777776665 4456667777777777777777
Q ss_pred HHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 321 ADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 321 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
|.+.|+...+ .+..+|..+...+...|++++|++.+++..+ ..|+..........+...++ .++|.+.+++..
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~-~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLD-PKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCC-HHHHHHHHHHHH
Confidence 7777776642 2345666666667777777777777777766 44543321111222233444 677777775544
Q ss_pred hhhCCCCChhHHHHHHHHHhccCChHHH--HHHHHHh-CCCC-----chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRA--QRMIREL-GFGS-----YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
. ..+|+...+ .+ .+...|+..++ .+.+.+. ...+ ....|..++..+.+.|++++|+..|+++++.+|
T Consensus 193 ~--~~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2 223322211 22 22223443332 2222211 1111 134566667777777777777777777777775
Q ss_pred -CChhHHHHHHHHH
Q 048766 470 -DSDYVYVMLCNLY 482 (525)
Q Consensus 470 -~~~~~~~~l~~~~ 482 (525)
+.......++...
T Consensus 268 ~~~~e~~~~~~e~~ 281 (296)
T PRK11189 268 YNFVEHRYALLELA 281 (296)
T ss_pred chHHHHHHHHHHHH
Confidence 3333333344333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=108.73 Aligned_cols=231 Identities=15% Similarity=0.198 Sum_probs=155.3
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHh-----C-CCchHH-HHHHHHHHHHcCCCHHHHHHHHHhcc--------CCC-
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQ-----G-LDASIV-VASALLDMYSKCGQVEIADSMFRSLC--------RKN- 332 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~- 332 (525)
+...+...|...|+++.|...++...+. | ..|... ..+.+...|...+++++|..+|+++. +.+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555555443 1 112222 22335566677777777777666663 111
Q ss_pred --HhHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCCH-hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC--C
Q 048766 333 --LVTWNAMITGYARNGDLTKVIELFEQLKT-----VRDLQPDS-VTFLNVLAACSHTDIPFDKVSEYFESMTKDYG--I 402 (525)
Q Consensus 333 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~--~ 402 (525)
..+++.|..+|.+.|++++|...+++..+ .|...|.. ..++.+...|...++ +++|..+++...+.+. +
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE-YEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhhc
Confidence 23566677777777777777666665433 12122332 345566667778888 9999998887765433 2
Q ss_pred CC----ChhHHHHHHHHHhccCChHHHHHHHHHh---------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-
Q 048766 403 KP----TVEHCCSMIRLMGQKGEVWRAQRMIREL---------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL- 467 (525)
Q Consensus 403 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 467 (525)
.+ -..++..|...|...|++.+|.++++++ +..+. ...++.+...|.+.+++.+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2467899999999999999999999986 11222 456788999999999999999999988764
Q ss_pred ---cCCC---hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 468 ---EGDS---DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 468 ---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+|++ ..+|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4554 45688999999999999999999988763
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-08 Score=89.43 Aligned_cols=283 Identities=6% Similarity=-0.090 Sum_probs=207.0
Q ss_pred HhcCChHHHHHHHhcCC-----CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHhccccchHH
Q 048766 212 AQFGDIEDAIMILSSMP-----SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY-TFSTMLSGIAGLSALTW 285 (525)
Q Consensus 212 ~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 285 (525)
+..++...|...+-.+. +.|+.....+..++...|+.++|...|++.+-. .|+.. ......-.+...|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 33455444444433222 467888899999999999999999999988754 34322 12222223456677777
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048766 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTV 362 (525)
Q Consensus 286 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (525)
...+...+.... ..+...+..-+......++++.|..+-++.++. ++..+-.-...+...+++++|.--|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~- 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM- 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh-
Confidence 777766665443 122222222333445678899999998888744 444555556788899999999999999988
Q ss_pred CCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHH-HHHh-ccCChHHHHHHHHHh-CCCCc-
Q 048766 363 RDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI-RLMG-QKGEVWRAQRMIREL-GFGSY- 437 (525)
Q Consensus 363 ~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~~~- 437 (525)
+.| +..+|..++..|...|. +.+|.-.-+...+ -+..+..+...++ ..+. ...--++|.+++++. ...|+
T Consensus 363 --Lap~rL~~Y~GL~hsYLA~~~-~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 363 --LAPYRLEIYRGLFHSYLAQKR-FKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred --cchhhHHHHHHHHHHHHhhch-HHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 666 68999999999999999 9999988887775 3445566655543 2222 233457899999885 77787
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
......+...|...|.++.++.++++.+...| |......|++.+...+.+.+|...|......++.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 45677788889999999999999999999999 7888999999999999999999999988776554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-10 Score=99.57 Aligned_cols=163 Identities=18% Similarity=0.132 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (525)
..+..+...+...|++++|.+.+++.. +.+...+..+...+...|++++|.+.+++.............+..+...+
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 344444455555555555555555443 22334455555556666666666666666655321111233444555566
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A 457 (525)
...|+ +++|.+.+++..+. .+.+...+..++..+...|++++|...+++. .. +.+...+..+...+...|+.++|
T Consensus 146 ~~~g~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 146 LKAGD-FDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHcCC-HHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 66666 67777776666542 1223455666666677777777777776665 21 22344445555666667777777
Q ss_pred HHHHHHHHhhc
Q 048766 458 RISAAEVIKLE 468 (525)
Q Consensus 458 ~~~~~~~~~~~ 468 (525)
..+.+.+.+..
T Consensus 223 ~~~~~~~~~~~ 233 (234)
T TIGR02521 223 QRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHhhC
Confidence 77766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-10 Score=112.22 Aligned_cols=211 Identities=14% Similarity=0.011 Sum_probs=166.3
Q ss_pred cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---------cCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCC
Q 048766 281 SALTWGMLIHSCVIKQGLDASIVVASALLDMYS---------KCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGD 348 (525)
Q Consensus 281 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 348 (525)
++.++|...+++..+.. +.+...+..+..++. ..+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45788999999998876 445556666665544 2345889999999887 3466788888889999999
Q ss_pred hhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh-hHHHHHHHHHhccCChHHHH
Q 048766 349 LTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV-EHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 426 (525)
+++|+..|+++.+ ..|+ ...+..+...+...|+ +++|...++++.+ +.|+. ..+..++..+...|++++|+
T Consensus 354 ~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~-~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 354 YIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQ-LEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHH
Confidence 9999999999999 6675 5677788888999999 9999999999984 46653 23344555677789999999
Q ss_pred HHHHHh--CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 427 RMIREL--GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 427 ~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
..++++ ...|+ +..+..+...+...|++++|...++++....|++......++..|...|+ +|...++.+.+.
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 999987 22354 44567778888899999999999999988888888888888889888884 888888877653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-08 Score=86.77 Aligned_cols=381 Identities=12% Similarity=0.097 Sum_probs=188.8
Q ss_pred HHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHH---------------
Q 048766 11 RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSL--------------- 75 (525)
Q Consensus 11 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--------------- 75 (525)
.++-+.|++++|...+..+.+.. .++....-.|...+--.|.+.+|..+....++ ....+.+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHH
Confidence 44557888888888888887765 44444444444444455778888777766654 1111111
Q ss_pred ----------------HHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHH-HHcccCChHHHHHHHHHHHHcccCCC
Q 048766 76 ----------------ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALA-ACGQLGSLQLGMAIHSKIVKYSLERG 138 (525)
Q Consensus 76 ----------------l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~ 138 (525)
.+.....-.+++|++++.+....+ |+-...+.-+. +|.+..-++-+.++++...+. ++.+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdS 218 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDS 218 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCc
Confidence 111112224555666666555432 33333333332 234445555555555554443 2233
Q ss_pred cchhhHHHHHHHhc--CCHHHHHHHHhhccCCChhhHHHHHHHHHhC-----CChHHHHHHHhcCCCCCcchHHHHHHHH
Q 048766 139 VVIANCLIDMYGKC--GSVEDAIGVFGEMIDKDIISWNSVIAASARN-----GNLELAFGFLHRLPNPDTISYNEVINGI 211 (525)
Q Consensus 139 ~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 211 (525)
....|.......+. |+..+ .-..++.+.....| ..+.-+++. ..-+.|++++-.+.+.-++.-..++-.|
T Consensus 219 tiA~NLkacn~fRl~ngr~ae--~E~k~ladN~~~~~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAE--DEKKELADNIDQEY-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred HHHHHHHHHHHhhhhccchhH--HHHHHHHhcccccc-hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 33333333322222 22211 11111111100001 111112221 1234455544444333344445566667
Q ss_pred HhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcC-------ChhHHHHHHHHHhhCCCCCCH-HHHHHHHHHhccccch
Q 048766 212 AQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN-------RVPEALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSAL 283 (525)
Q Consensus 212 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~ 283 (525)
.+.+++++|..+.+.+...++.-|-.-.-.++..| +..-|.+.|+-.-.++..-|. ..-..+...+.-..++
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 77788888887777775433333322222233333 234455555444333322221 2233344445555667
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC---CHhHHHH-HHHHHHhcCChhHHHHHHHHH
Q 048766 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK---NLVTWNA-MITGYARNGDLTKVIELFEQL 359 (525)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-l~~~~~~~~~~~~a~~~~~~~ 359 (525)
+.+..++..+...-...|...++ +..+++..|++.+|+++|-.+..+ |..+|.+ |.+.|.+.+.++.|.+++-++
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 77777766666655444444443 566777777777777777777643 3344543 446677777777776665544
Q ss_pred hhCCCCCCCHhHHH-HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHH
Q 048766 360 KTVRDLQPDSVTFL-NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409 (525)
Q Consensus 360 ~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 409 (525)
.. +.+..+.. .+...|.+.+. +--|-+.|+.+. ..+|++..|
T Consensus 455 ~t----~~e~fsLLqlIAn~CYk~~e-FyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 455 NT----PSERFSLLQLIANDCYKANE-FYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred CC----chhHHHHHHHHHHHHHHHHH-HHHHHHhhhHHH---ccCCCcccc
Confidence 22 12233322 33445666666 666667776665 446766665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-09 Score=97.60 Aligned_cols=213 Identities=13% Similarity=0.111 Sum_probs=155.5
Q ss_pred cchHHHHHHHHHHHHhC-CCc--hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHH
Q 048766 281 SALTWGMLIHSCVIKQG-LDA--SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 281 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
+..+.+..-+.+++... ..| ....+..+...|...|+.+.|...|++.. +.+...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666677776776532 122 24567778888999999999999999886 3467789999999999999999999
Q ss_pred HHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 355 LFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
.|++..+ +.|+ ...+..+...+...|+ +++|.+.++...+. .|+..........+...+++++|...+++.
T Consensus 120 ~~~~Al~---l~P~~~~a~~~lg~~l~~~g~-~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLE---LDPTYNYAYLNRGIALYYGGR-YELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999998 6775 5677778888888998 99999999999854 554332222233445678899999999765
Q ss_pred -CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHH-------hhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 433 -GFGSYGVVWRALLSASGACSDLDVARISAAEVI-------KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 433 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
...|+...+ .......|+...+ +.++.+. ++.|..+.+|..++.++...|++++|+..|++..+.++.
T Consensus 193 ~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 193 EKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 223333222 2222334554333 2333333 556777889999999999999999999999999987753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-08 Score=91.23 Aligned_cols=413 Identities=14% Similarity=0.038 Sum_probs=238.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHH
Q 048766 77 SGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE 156 (525)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 156 (525)
.-+...|++++|.+...++...+ +-+...+..-+.+..+.+.+++|..+.+.-.. ...+.+.+-.-.-+..+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence 34456778888888888888754 44566777777888888888888754442111 0111111111122334678889
Q ss_pred HHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHH-HHhcCChHHHHHHHhcCCCCCcccH
Q 048766 157 DAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVING-IAQFGDIEDAIMILSSMPSPNSSSW 235 (525)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 235 (525)
+|...++.....+..+...-...+.+.|++++|+++|+.+...+...+..-+.+ +...+..-.+. +.+........+|
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchH
Confidence 998888866555666777777888889999999999988844333333322221 11111111121 3444443233344
Q ss_pred HH---HHHHHHhcCChhHHHHHHHHHhhC-------CCCCCH-------HHHHHHHHHhccccchHHHHHHHHHHHHhCC
Q 048766 236 NS---ILTGYVNRNRVPEALHLFGEMQSK-------DVPMDE-------YTFSTMLSGIAGLSALTWGMLIHSCVIKQGL 298 (525)
Q Consensus 236 ~~---l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 298 (525)
.. ....++..|++.+|+++++...+. +-.-+. ..-..+.-++...|+.++|..+|...++...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 33 344567889999999999888321 111111 1122344456688999999999999998873
Q ss_pred CchHH---HHHHHHHHHHcCCCH-H-HHHHHHHhccCCCH--------------hHHH-HHHHHHHhcCChhHHHHHHHH
Q 048766 299 DASIV---VASALLDMYSKCGQV-E-IADSMFRSLCRKNL--------------VTWN-AMITGYARNGDLTKVIELFEQ 358 (525)
Q Consensus 299 ~~~~~---~~~~l~~~~~~~g~~-~-~A~~~~~~~~~~~~--------------~~~~-~l~~~~~~~~~~~~a~~~~~~ 358 (525)
...+. ..|.|+. ...-.++ + .+...++....... ...| .++..| .+.-+.+.++...
T Consensus 256 ~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSAS 332 (652)
T ss_pred CCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHh
Confidence 32221 1222222 2211111 1 22333333321111 1112 222222 2333444444444
Q ss_pred HhhCCCCCCCHhHHHHHHHHHcC--CCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHH-----
Q 048766 359 LKTVRDLQPDSVTFLNVLAACSH--TDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIR----- 430 (525)
Q Consensus 359 ~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~----- 430 (525)
... ..|... +..++..+.+ ... +.++.+++....+. .+-. ..+...++......|+++.|++++.
T Consensus 333 lp~---~~p~~~-~~~ll~~~t~~~~~~-~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 333 LPG---MSPESL-FPILLQEATKVREKK-HKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred CCc---cCchHH-HHHHHHHHHHHHHHH-HhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 332 344433 3344443322 223 67788888777653 2222 4455667778889999999999998
Q ss_pred ---Hh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------CCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 431 ---EL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE-------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 431 ---~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
.+ ...-.+.+...+...+.+.++.+.|..++.+++.-- +.-...+..++..-.+.|+-++|..+++++.
T Consensus 406 ~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 406 WKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred hhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 33 223334555666777788888888888888887621 2233445566777778899999999999998
Q ss_pred HcCC
Q 048766 500 ERGL 503 (525)
Q Consensus 500 ~~~~ 503 (525)
+.+.
T Consensus 486 k~n~ 489 (652)
T KOG2376|consen 486 KFNP 489 (652)
T ss_pred HhCC
Confidence 8543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.4e-12 Score=79.51 Aligned_cols=50 Identities=38% Similarity=0.775 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcc
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (525)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-08 Score=95.53 Aligned_cols=132 Identities=12% Similarity=0.155 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSM 412 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 412 (525)
.|......+.+.++.++|...+.+..+ +.| ....|......+...|. +++|.+.|.... -++|+ +....++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~-~~EA~~af~~Al---~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQ-LEEAKEAFLVAL---ALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHh-hHHHHHHHHHHH---hcCCCCcHHHHHH
Confidence 466667788889999999988888887 556 45666666667777888 999999998887 56774 7788899
Q ss_pred HHHHhccCChHHHHH--HHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 413 IRLMGQKGEVWRAQR--MIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
+.++.+.|+..-|.. ++..+ ...| ++..|..++..+.+.|+.+.|.++|.-++++++.+|.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999998877777 88876 4455 4789999999999999999999999999999976653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.8e-08 Score=89.54 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=82.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
++..++..|-+.|+++.|...++.. +..|+ ...|..-.+.+...|+.++|...++++.+++-.|...-...+.-..++
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 3456677888999999999999987 65666 345555567788899999999999999999854666666788888999
Q ss_pred cChhHHHHHHHHHHHcCCc-----cCCcccEEEe
Q 048766 486 GNWDVASVMRNFMRERGLR-----KEAGCSWIEV 514 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~ 514 (525)
++.++|.++..+....|.. .+-.|+|.++
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 9999999999988887753 2234556554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-08 Score=95.08 Aligned_cols=429 Identities=11% Similarity=0.072 Sum_probs=234.6
Q ss_pred HHHHHccCCHHHHHHHHhcCCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHc-c----
Q 048766 45 MGFYRKINSLADAHKMFVEIPQ--PSVV-SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACG-Q---- 116 (525)
Q Consensus 45 l~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~---- 116 (525)
...+...|++++|++.++.... .|.. ........+.+.|+.++|..++..+.+.+ |+...|...+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4456677888888888877655 4443 44556667788888888888888888865 55555544444443 1
Q ss_pred -cCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHH-HHHHHHhhccCCChhh-HHHHHHHHHhCCChHHHHHHH
Q 048766 117 -LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVE-DAIGVFGEMIDKDIIS-WNSVIAASARNGNLELAFGFL 193 (525)
Q Consensus 117 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~ 193 (525)
..+.+...++++++...- |.......+.-.+..-..+. .+...+..+..+++.+ ++.+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 124666777777776653 33333322222222212222 3344444455555543 333333333222222222222
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC-CCCcc--cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHH
Q 048766 194 HRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP-SPNSS--SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD-EYT 269 (525)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~ 269 (525)
... .......+.+.... ..-. .|+.. ++..+...|...|++++|++++++.++. .|+ +..
T Consensus 167 ~~~-----------~~~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~el 230 (517)
T PF12569_consen 167 EEY-----------VNSLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVEL 230 (517)
T ss_pred HHH-----------HHhhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHH
Confidence 221 00000000000000 0001 13332 3455677788888999999998888876 444 567
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh----------HH--H
Q 048766 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV----------TW--N 337 (525)
Q Consensus 270 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~ 337 (525)
|..-.+.+-+.|++.+|...++...+.+ ..|..+-+..+..+.+.|+.++|.+++....+++.. .| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 7777888888899999988888888876 557777777788888889999998888877654311 22 3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC----CCCC----------HhHHHHHHHHHcCCCCC------cchHHHHHHHhh
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRD----LQPD----------SVTFLNVLAACSHTDIP------FDKVSEYFESMT 397 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~----------~~~~~~l~~~~~~~~~~------~~~a~~~~~~~~ 397 (525)
.-..+|.+.|++..|++-|..+.+.-. -.-| ..+|..++...-+.... ...|++++-.+.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~ 389 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELH 389 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 346778888888888776665544210 1112 23333333322111110 223444444443
Q ss_pred hhhCCCC-----------ChhHHHHHHHHH---hccCChHHHHHHHHH-----------h----CCCCchhHHHHHHHHH
Q 048766 398 KDYGIKP-----------TVEHCCSMIRLM---GQKGEVWRAQRMIRE-----------L----GFGSYGVVWRALLSAS 448 (525)
Q Consensus 398 ~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~~~~~~~~~~~l~~~~ 448 (525)
....... +..--..+..-. .+...-+++...-.+ . +...|. ..++.-+
T Consensus 390 d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---Dp~GekL 466 (517)
T PF12569_consen 390 DKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD---DPLGEKL 466 (517)
T ss_pred cCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC---CccHHHH
Confidence 3200000 000001111100 011111111111100 0 111111 1122333
Q ss_pred hcCC-ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 449 GACS-DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 449 ~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
.+.. =.++|.++++-+.+..|++..+|.....+|.+.|++--|++.+.+
T Consensus 467 ~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 467 LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3444 478899999999999999999999999999999999999887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-08 Score=84.84 Aligned_cols=409 Identities=11% Similarity=0.035 Sum_probs=257.5
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhH-HHHHH
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC-LIDMY 149 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 149 (525)
-+++++..+.+..++..|++++....++. +.+....+.|..+|....++..|...++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 36778888888899999999998888764 236777888888888999999999999988764 354444432 24556
Q ss_pred HhcCCHHHHHHHHhhccCCC-hhh--HHHHHHHHHhCCChHHHHHHHhcCC-CCCcchHHHHHHHHHhcCChHHHHHHHh
Q 048766 150 GKCGSVEDAIGVFGEMIDKD-IIS--WNSVIAASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQFGDIEDAIMILS 225 (525)
Q Consensus 150 ~~~g~~~~a~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 225 (525)
.+.+.+.+|+++...|.+.+ ... ...-.......+++..+..++++.+ +.+..+.+.......+.|+++.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 67888999999998887642 221 1222234556888888888888886 4666677777777778889999988888
Q ss_pred cCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH----HHHHHHhccccchHHHHHHHHHHHHhC
Q 048766 226 SMPS----PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF----STMLSGIAGLSALTWGMLIHSCVIKQG 297 (525)
Q Consensus 226 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~ 297 (525)
...+ .....|+. .-++.+.|+++.|+++..++++.|++-.+..- .-.+.+ ...|+.. .|..
T Consensus 169 aAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~-------~lh~-- 237 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTL-------VLHQ-- 237 (459)
T ss_pred HHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchH-------HHHH--
Confidence 7764 23334554 34556678888999999888888765322100 000000 0001000 0000
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhH
Q 048766 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLCR-----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVT 371 (525)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 371 (525)
..-...++.-...+.+.|+++.|.+.+-.|++ .|++|...+.-.= ..+++.+..+-++-+.+ +.| ...|
T Consensus 238 -Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~---~nPfP~ET 312 (459)
T KOG4340|consen 238 -SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ---QNPFPPET 312 (459)
T ss_pred -HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh---cCCCChHH
Confidence 11123444455567789999999999999984 3677776654322 24556666666666666 344 4678
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHH-hccCChHHHHHHHHHhCCCCchhHHHHHHHHH-h
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM-GQKGEVWRAQRMIRELGFGSYGVVWRALLSAS-G 449 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~ 449 (525)
|..++-.||+..- ++.|-.++.+-....-.-.++..|+ |++++ .-.-..++|.+-++.+...-....-...+... .
T Consensus 313 FANlLllyCKNey-f~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~ 390 (459)
T KOG4340|consen 313 FANLLLLYCKNEY-FDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEA 390 (459)
T ss_pred HHHHHHHHhhhHH-HhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 9999888754332100011334444 34444 34557777777776651111111111111111 1
Q ss_pred cCCC----hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 450 ACSD----LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 450 ~~~~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+..+ ...|++-+++.+++. -.+....++.|++..++.-+.++|..-.+-.-
T Consensus 391 r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 391 RHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 2222 233445556666654 12566778999999999999999987766544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-09 Score=84.94 Aligned_cols=188 Identities=15% Similarity=0.094 Sum_probs=78.5
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++.. +.+..+.|.....+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333334444443333333333 3333344444444444444444444444443 223334444444444444444444
Q ss_pred HHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 354 ELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
..|++........--..+|..+..+..+.|+ .+.|.+.|++..+. .| .+.....+.+...+.|++..|...++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQ-FDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-chhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4444444432111113344444444444444 44444444444421 22 2333344444444444444444444443
Q ss_pred --CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 433 --GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 433 --~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
...+...++...+..-...||.+.+.+.=.++.+..|
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 2223333333333333444444444444444444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=77.47 Aligned_cols=50 Identities=30% Similarity=0.746 Sum_probs=46.8
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc
Q 048766 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279 (525)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 279 (525)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-07 Score=89.17 Aligned_cols=331 Identities=14% Similarity=0.108 Sum_probs=166.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhc--cCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcch--------H--------
Q 048766 143 NCLIDMYGKCGSVEDAIGVFGEM--IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTIS--------Y-------- 204 (525)
Q Consensus 143 ~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~-------- 204 (525)
.+-|..|.+.|....|.+....- ...|......+..++.+..-+++|-++|+++.+++... |
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 34567777888777766554221 22344444555555555555555555555553332110 0
Q ss_pred -----------HHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 048766 205 -----------NEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273 (525)
Q Consensus 205 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 273 (525)
.....-+...|+++.|...|-+. ...---+.+.....+|.+|+.+++.+++... -..-|..+
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~i 771 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEI 771 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHH
Confidence 00111112223333333333221 0111223445566777777777777766532 23345666
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCH--hHHHHHHHHHHhcCChhH
Q 048766 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL--VTWNAMITGYARNGDLTK 351 (525)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 351 (525)
...|+..|+++.|.++|.+.- .++..+.+|.+.|+|+.|.++-.+...|.. ..|-+-..-+-.+|++.+
T Consensus 772 adhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e 842 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE 842 (1636)
T ss_pred HHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence 677777777777777765331 234456677777777777777666654432 233333333333444333
Q ss_pred HHHHH-------------HHHhhC-------CCCCCC--HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHH
Q 048766 352 VIELF-------------EQLKTV-------RDLQPD--SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHC 409 (525)
Q Consensus 352 a~~~~-------------~~~~~~-------~~~~p~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 409 (525)
|.++| ++.... +...|+ ..|-..+..-+-..|+ ++.|...|-+... |
T Consensus 843 aeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~-lkaae~~flea~d----------~ 911 (1636)
T KOG3616|consen 843 AEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGD-LKAAEEHFLEAGD----------F 911 (1636)
T ss_pred hhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccC-hhHHHHHHHhhhh----------H
Confidence 33332 211000 001222 2344455556666676 7777766655432 4
Q ss_pred HHHHHHHhccCChHHHHHHHHHhC-CCCch-h--HHH------HHHHHHhcCC-------------ChHHHHHHHHHHHh
Q 048766 410 CSMIRLMGQKGEVWRAQRMIRELG-FGSYG-V--VWR------ALLSASGACS-------------DLDVARISAAEVIK 466 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~--~~~------~l~~~~~~~~-------------~~~~A~~~~~~~~~ 466 (525)
..-+.+|...+.+++|-++-+.-+ .+... . .|. ..+..+.+.| .++-|..+.+-+.+
T Consensus 912 kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k 991 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK 991 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh
Confidence 455566666777777766655431 11110 0 111 1111222333 34444433333332
Q ss_pred hcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 467 LEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 467 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
. .-+.+...++..+...|++++|.+.|-+..+.+
T Consensus 992 ~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 992 D--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred c--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 2 246778888999999999999988887776643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-10 Score=95.16 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=169.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH-HHHHHhcccc
Q 048766 205 NEVINGIAQFGDIEDAIMILSSMP--SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS-TMLSGIAGLS 281 (525)
Q Consensus 205 ~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~~ 281 (525)
+-+..+|.+.|.+.+|++.|+... .|-+.||..|-+.|.+..++..|+.+|.+-.+. -|..+||. ...+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 457788889999999998888766 377889999999999999999999999988875 44444443 3333444444
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
+.+.+.++|+...+.. +.++.....+...|.-.++++-|+..|+++..
T Consensus 305 ~~~~a~~lYk~vlk~~--------------------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH--------------------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcC--------------------------------CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 4444444444444332 22334444555667777888888888888888
Q ss_pred CCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh--CCCCc
Q 048766 362 VRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSY 437 (525)
Q Consensus 362 ~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~ 437 (525)
-| .-++..|+.+.-.|...+. ++-++..|++.... .-.|+ ..+|..+.......||+.-|.+.|+-. ....+
T Consensus 353 mG--~~speLf~NigLCC~yaqQ-~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 353 MG--AQSPELFCNIGLCCLYAQQ-IDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred hc--CCChHHHhhHHHHHHhhcc-hhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 77 3456667777777777777 88888888887654 33343 567888888888889999998888875 33344
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
...++.|...-.+.|++++|..++..+....|+-.+...+
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 6778888888888999999999999998888865444333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.9e-08 Score=87.64 Aligned_cols=441 Identities=10% Similarity=0.010 Sum_probs=222.6
Q ss_pred HHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CC-cccHHHHHHHHHhcCChHH
Q 048766 11 RASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PS-VVSWNSLISGYVQSGKYRK 87 (525)
Q Consensus 11 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~ 87 (525)
.+....|+++.|...|...+..+ ++|...|..-..+|++.|++++|++=-.+-.+ |+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34556788888888888888877 66888888888888888888888766555544 33 3467888888888888888
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH-----HHHHhcCCHHHHHHHH
Q 048766 88 ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI-----DMYGKCGSVEDAIGVF 162 (525)
Q Consensus 88 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~ 162 (525)
|+.-|.+-.+.. +.|...+.-+..+. ..+.+. +.. -.++..+..+. +.+...-.+-..+..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 888888777642 22344455555444 111111 111 11222222222 1122222222222222
Q ss_pred hhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCC--------------CCCcchHHHHHHHHHhcCCh-HHHHHHHhcC
Q 048766 163 GEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP--------------NPDTISYNEVINGIAQFGDI-EDAIMILSSM 227 (525)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 227 (525)
..- +.. +..+.+-.....+.-.+.... ...+. .......-..++. ++...
T Consensus 156 ~~~----p~~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~d~~ee~~~----- 220 (539)
T KOG0548|consen 156 QKN----PTS----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC--KQEHNGFPIIEDNTEERRV----- 220 (539)
T ss_pred hcC----cHh----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc--cccCCCCCccchhHHHHHH-----
Confidence 111 110 011111111111111111110 00000 0000000000000 00000
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHH---
Q 048766 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVV--- 304 (525)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 304 (525)
+.-..-...+.....+..+++.|++.+....+.. -+..-++....++...|........-....+.|.. ...-
T Consensus 221 -k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~kl 296 (539)
T KOG0548|consen 221 -KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKL 296 (539)
T ss_pred -HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHH
Confidence 0001123445566666667777777777766653 23333444445566666665555555444444321 1111
Q ss_pred ----HHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHH
Q 048766 305 ----ASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAAC 379 (525)
Q Consensus 305 ----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 379 (525)
+..+..+|.+.++++.|...|.+...+... -....+....++++...+...- +.|.. .....-...+
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~ 368 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEA 368 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHH
Confidence 112333555566667777666664311100 1112233344555555555444 44442 1122224455
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 457 (525)
.+.|+ +..|+..|.++++. -+-|...|..-.-+|.+.|.+..|++-.+.. ...|+ ...|..-+.++....+++.|
T Consensus 369 Fk~gd-y~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 369 FKKGD-YPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HhccC-HHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 66677 88888888887754 2335777777777888888888777776654 33343 34444445555566778888
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
++.|+++++.+|++......+.++...........++.
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 88888888888877777776666666543333333333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-07 Score=88.94 Aligned_cols=378 Identities=13% Similarity=0.137 Sum_probs=230.5
Q ss_pred ccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC---ChhhHHHHHHHHHhCCChHHHHHH
Q 048766 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 192 (525)
..+++...++..+.+.+ +.+....+.....-.+...|+.++|......-... +.++|+.+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 44555555555555555 23334444444444445567777777666665543 445677777777777777777777
Q ss_pred HhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCC
Q 048766 193 LHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS--P-NSSSWNSILTGYVNRNRVPEALHLFGEMQSKD-VPM 265 (525)
Q Consensus 193 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~ 265 (525)
|... .+.|...+..+.-.-++.++++.....-....+ | ....|..++.++.-.|+...|..++++..... ..|
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7766 334556666666666677777766655555443 2 33457888888888999999999999887764 356
Q ss_pred CHHHHHHHHHH------hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--CCHhHHH
Q 048766 266 DEYTFSTMLSG------IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--KNLVTWN 337 (525)
Q Consensus 266 ~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 337 (525)
+...+...... ....|.++.|.+.+..-... +......-..-...+.+.+++++|..++..+.. ||...|.
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 66665544332 34556667776665544332 122333344556778889999999999999874 4444444
Q ss_pred -HHHHHHHhcCChhHHH-HHHHHHhhCCCCCCCHhHHHHH-HHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 338 -AMITGYARNGDLTKVI-ELFEQLKTVRDLQPDSVTFLNV-LAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 338 -~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.+..++.+..+.-++. .+|....+ ..|.......+ +.......- .+...+++....+. |+++- +..+..
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~---~y~r~e~p~Rlplsvl~~eel-~~~vdkyL~~~l~K-g~p~v---f~dl~S 328 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSE---KYPRHECPRRLPLSVLNGEEL-KEIVDKYLRPLLSK-GVPSV---FKDLRS 328 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh---cCcccccchhccHHHhCcchh-HHHHHHHHHHHhhc-CCCch---hhhhHH
Confidence 4445554444444444 67776665 33432222222 222222222 33344555555554 66553 333333
Q ss_pred HHhccCChHH----HHHHHHHh-C------------CCCchhHHH--HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 415 LMGQKGEVWR----AQRMIREL-G------------FGSYGVVWR--ALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 415 ~~~~~g~~~~----A~~~~~~~-~------------~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
.|-.....+= +..+...+ + .+|.+..|. .+...+-..|+++.|...++.++..-|.-++.|
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 3332221111 11111111 1 245555554 456677889999999999999999999888889
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..=++++...|+.++|...+++.++...
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999999999987655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-09 Score=98.07 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCC----------CCcc-cHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCC--
Q 048766 203 SYNEVINGIAQFGDIEDAIMILSSMPS----------PNSS-SWNSILTGYVNRNRVPEALHLFGEMQSK---DVPMD-- 266 (525)
Q Consensus 203 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~-- 266 (525)
+++.|...|.+.|++++|...+++..+ +.+. .++.++..+...+++++|..+++...+. -..++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 344445555666666555555544431 2221 3566677778888888888888765431 01111
Q ss_pred --HHHHHHHHHHhccccchHHHHHHHHHH
Q 048766 267 --EYTFSTMLSGIAGLSALTWGMLIHSCV 293 (525)
Q Consensus 267 --~~~~~~l~~~~~~~~~~~~a~~~~~~~ 293 (525)
..++..+...+...|++++|..+++.+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 234444444444455555554444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=100.22 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=168.5
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..++++.+ .|....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346677888888888777776 66778888888888888888888888887763 35566777777888888888888
Q ss_pred HHHHHHhhCCCCCCCHhHHHHHH-----------HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 354 ELFEQLKTVRDLQPDSVTFLNVL-----------AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
+.++.-... .|- |..+. ..+..... +.+..++|-++....+..+|+.+...|+-.|.-.|++
T Consensus 374 ~~L~~Wi~~---~p~---y~~l~~a~~~~~~~~~~s~~~~~~-l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 374 KMLDKWIRN---KPK---YVHLVSAGENEDFENTKSFLDSSH-LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHh---Ccc---chhccccCccccccCCcCCCCHHH-HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 888876552 211 10111 11222222 4556667767666546668888999999999999999
Q ss_pred HHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 423 WRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 423 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
++|+..|+.+ ..+| |...|+.|+.+++...+.++|+..|.+++++.|.-..+...|+..|...|.|+||.++|-..+.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999987 4455 4778999999999999999999999999999999999999999999999999999999887655
Q ss_pred c
Q 048766 501 R 501 (525)
Q Consensus 501 ~ 501 (525)
.
T Consensus 527 m 527 (579)
T KOG1125|consen 527 M 527 (579)
T ss_pred h
Confidence 3
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-08 Score=89.39 Aligned_cols=226 Identities=10% Similarity=0.043 Sum_probs=134.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcC
Q 048766 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD-ASIVVASALLDMYSKC 315 (525)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 315 (525)
.+.+++...|+++.++ .++.... .|.......+...+...++.+.+..-++........ .+..+......++...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3445555555554332 2222222 444444444444443333333333333332222212 2333333344556667
Q ss_pred CCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHc---CCCCCcchHHHH
Q 048766 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS---HTDIPFDKVSEY 392 (525)
Q Consensus 316 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~~a~~~ 392 (525)
|+++.|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...|.. ...+..++. ..|+.+.+|.-+
T Consensus 116 ~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 116 GDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSI-LTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHH-HHHHHHHHHHHHhCchhHHHHHHH
Confidence 8888887777655 4556666677888899999999999999987 555543 333443322 223338999999
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCCh-HHHHHHHHHHHhhcC
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDL-DVARISAAEVIKLEG 469 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p 469 (525)
|+++.. ...+++.+.+.++.++...|++++|.+++++. ..+.++.++..++......|+. +.+.+.+.++....|
T Consensus 190 f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 190 FEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 999875 45678888888888888889999998888886 3334466666777777777776 677788888888888
Q ss_pred CChhH
Q 048766 470 DSDYV 474 (525)
Q Consensus 470 ~~~~~ 474 (525)
+++..
T Consensus 268 ~h~~~ 272 (290)
T PF04733_consen 268 NHPLV 272 (290)
T ss_dssp TSHHH
T ss_pred CChHH
Confidence 76544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.1e-08 Score=87.60 Aligned_cols=397 Identities=11% Similarity=0.000 Sum_probs=217.0
Q ss_pred CccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHH
Q 048766 1 PNEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLIS 77 (525)
Q Consensus 1 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~ 77 (525)
||...|..-..+++..|+++.|.+--..-++.. |.=+..|.....++.-.|++++|+.-|.+-.+ .|...++-+..
T Consensus 34 ~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 34 TNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQ 112 (539)
T ss_pred CccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHH
Confidence 466777888889999999999988777766664 33367888899998889999999999988776 34455666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHH-----HHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhc
Q 048766 78 GYVQSGKYRKALNLFVELERSEIYADAYSFTSALA-----ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152 (525)
Q Consensus 78 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (525)
++ ..+.+. +.. .-++..|..+.. .+.....+. .++... +.+ +.+. ..|..-
T Consensus 113 a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~---~~l~~~-~~~-p~~l-------~~~l~d 168 (539)
T KOG0548|consen 113 AY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV---KILEII-QKN-PTSL-------KLYLND 168 (539)
T ss_pred hh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---HHHHHh-hcC-cHhh-------hccccc
Confidence 55 111111 110 111222222211 111111111 111111 111 1111 111111
Q ss_pred CCHHHHHHHHhhccCCChhhHHHHHHHH-HhCCChHHHHHHHhcCCC---------------CCcchHHHHHHHHHhcCC
Q 048766 153 GSVEDAIGVFGEMIDKDIISWNSVIAAS-ARNGNLELAFGFLHRLPN---------------PDTISYNEVINGIAQFGD 216 (525)
Q Consensus 153 g~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~ 216 (525)
..+..+...+...... .....-... .....+. ....+ .-..-...+.++.-+..+
T Consensus 169 ~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~------~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDEL---LFYASGIEILASMAEPC------KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HHHHHHHHHHhcCccc---cccccccccCCCCCCcc------cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 1122222222111000 000000000 0000000 00000 011223445666666667
Q ss_pred hHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH-------HHHHHHhccccchHHHH
Q 048766 217 IEDAIMILSSMPS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF-------STMLSGIAGLSALTWGM 287 (525)
Q Consensus 217 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~ 287 (525)
++.|...+....+ .+..-++....+|...|.+.++...-....+.|.. ...-| ..+..++.+.++++.+.
T Consensus 240 f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 240 FETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 7777776665553 23334556666777777777766666655554421 11122 22334566677888888
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCCHh-HHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048766 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLV-TWNAMITGYARNGDLTKVIELFEQLKTVRD 364 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 364 (525)
..|.+.......|+. ..+....+++........ .|... -...-...+.+.|++..|+..|.++++
T Consensus 319 ~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--- 386 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--- 386 (539)
T ss_pred HHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---
Confidence 888887665444433 223344555555544443 23221 122226677889999999999999998
Q ss_pred CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHH
Q 048766 365 LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVW 441 (525)
Q Consensus 365 ~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 441 (525)
..| |...|..-..+|.+.+. +..|++-.+...+. .|+ ...|..=+.++.-..++++|.+.|++. ...|+..-+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~-~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGE-YPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 456 57888888999999999 99999888877743 554 445555566666677899999999886 555665444
Q ss_pred HHHHHHH
Q 048766 442 RALLSAS 448 (525)
Q Consensus 442 ~~l~~~~ 448 (525)
..-+.-|
T Consensus 463 ~~~~~rc 469 (539)
T KOG0548|consen 463 IDGYRRC 469 (539)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-07 Score=86.42 Aligned_cols=348 Identities=14% Similarity=0.100 Sum_probs=214.3
Q ss_pred HHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHH
Q 048766 109 SALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLEL 188 (525)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 188 (525)
..+.+......|.+|..+++.+.... .-...|..+...|+..|+++.|+++|-+.- .++.-|..|.+.|+|+.
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHH
Confidence 34555667788999999998877653 344567788899999999999999986642 34556788999999999
Q ss_pred HHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 189 AFGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266 (525)
Q Consensus 189 a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 266 (525)
|.++-.+... .....|.+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++..+-... .-
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l 881 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HL 881 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hh
Confidence 9999988843 4455666667778889999999999998888874 467888999999988887654321 12
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh-----HHH----
Q 048766 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV-----TWN---- 337 (525)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~---- 337 (525)
..|...+..-+...|++..|..-|-+..+ |.+-+++|...+-|++|.++-+.--..|.. .|.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 34556667777888998888877655433 445667777778888887766543322211 111
Q ss_pred ---------------HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCC
Q 048766 338 ---------------AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402 (525)
Q Consensus 338 ---------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~ 402 (525)
.-+..-+..+-++-|.++-+-..+.. .|.. ...+..-+-..|+ ++.|.+.|-+..+..
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~v--hlk~a~~ledegk-~edaskhyveaikln-- 1025 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEV--HLKLAMFLEDEGK-FEDASKHYVEAIKLN-- 1025 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--Cccc--hhHHhhhhhhccc-hhhhhHhhHHHhhcc--
Confidence 11122233444555555544443322 2222 2233444566777 888888777766431
Q ss_pred CCChhHHHH-------------------HHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 403 KPTVEHCCS-------------------MIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 403 ~~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
.--.+|.. -+.++.+..+++.|.++-+.-....-+.++..-.+.....||+.+|..++-+
T Consensus 1026 -tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllr 1104 (1636)
T KOG3616|consen 1026 -TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLR 1104 (1636)
T ss_pred -cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheee
Confidence 11111111 1223334444444444433321111133344444555667888888777655
Q ss_pred HHhhcCCChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 464 VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 464 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
+- .|+ ..++-|...+.|.+|+++-+
T Consensus 1105 an--kp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1105 AN--KPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred cC--CCc------hHHHHHHHhccChHHHHHHH
Confidence 42 242 12344556677777766544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-08 Score=95.08 Aligned_cols=131 Identities=8% Similarity=-0.057 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH----HHHHHHhccCChHHHHHHHHHhCCCCchhHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC----SMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 444 (525)
.+.|.+.....-+.+. ++.|.+...+...-...+-+...|+ .+.+.++..|.++.|...+.......+..+...-
T Consensus 967 ~fAy~~~gstlEhL~e-y~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~ 1045 (1238)
T KOG1127|consen 967 CFAYAANGSTLEHLEE-YRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD 1045 (1238)
T ss_pred hHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh
Confidence 4555555554444444 5555554444332111122333333 3455666677777776666544322232222222
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+.. .-.|+++++.+.|++++.+--++. .....++.+...++..+.|...+-+....
T Consensus 1046 l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1046 LTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 222 335788999999999988653332 34556677777778888887776655443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-07 Score=80.35 Aligned_cols=311 Identities=14% Similarity=0.092 Sum_probs=158.6
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHH---HHHHhCCChHHHHHHHhcC--CCCCcch-HHHHHHHHHhc
Q 048766 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVI---AASARNGNLELAFGFLHRL--PNPDTIS-YNEVINGIAQF 214 (525)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~--~~~~~~~-~~~l~~~~~~~ 214 (525)
-...+.+.+...|++..|+.-|...++-|+..|.++. ..|...|+...|+.-+.+. .+||-.. -.--...+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 3344566666777888888888777777776665553 3455566655555555554 2232211 11122334445
Q ss_pred CChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 048766 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVI 294 (525)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 294 (525)
|.++.|..-|+.+.+.++. .|...++..-+.... ........+..+...|+...++.....++
T Consensus 120 Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 5555555444444321110 000000000000000 00111222334455666677777776666
Q ss_pred HhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhH
Q 048766 295 KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT 371 (525)
Q Consensus 295 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 371 (525)
+.. +-+...+..-..+|...|++..|+.=++... ..+....--+-..+...|+.+.++...++..+ +.||...
T Consensus 183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~ 258 (504)
T KOG0624|consen 183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKL 258 (504)
T ss_pred hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhh
Confidence 654 4566666666777777777777765554443 44555555556666677777777777777776 6666421
Q ss_pred -HH---HH---------HHHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 372 -FL---NV---------LAACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 372 -~~---~l---------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
|. .+ +......+. |.++.+-.+...+. .|. ...+..+-.+|...|++.+|++...+.
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~-~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKH-WTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 11 11 011222333 44444444444432 232 122333344455556666666666554
Q ss_pred CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 433 GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 433 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.+.|+ ..++..-..+|.-...++.|+.-|+++.+.+|+|..+-.
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 44444 445555556666666666666666666666665554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-08 Score=96.67 Aligned_cols=256 Identities=11% Similarity=0.046 Sum_probs=152.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-----
Q 048766 241 GYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC----- 315 (525)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 315 (525)
.+...|++++|++.+++-... +.............+.+.|+.++|..++..+++.+ |.+..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 344556666666666543322 22222333344455556666666666666666655 34444444444444221
Q ss_pred CCHHHHHHHHHhccCCC--HhHHHHHHHHHHhcCCh-hHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHH
Q 048766 316 GQVEIADSMFRSLCRKN--LVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 316 g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
.+.+...++++++.... ......+.-.+.....+ ..+...+..+...| +++ +|..+-..|....+ .+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-vPs---lF~~lk~Ly~d~~K-~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG-VPS---LFSNLKPLYKDPEK-AAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC-Cch---HHHHHHHHHcChhH-HHHHHHH
Confidence 13445555555553211 11111111111111111 23445555666666 433 33344444444433 4444444
Q ss_pred HHHhhhhh-------------CCCCCh--hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChH
Q 048766 393 FESMTKDY-------------GIKPTV--EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLD 455 (525)
Q Consensus 393 ~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~ 455 (525)
+....... .-+|+. .++..+...|...|++++|++.+++. ...|. +..|..-+..+.+.|++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 44433211 112333 24466788889999999999999986 55566 667778888999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+|.+.++.+.++++.|...-...+..+.+.|++++|.+.+......+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999998877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=94.17 Aligned_cols=248 Identities=11% Similarity=0.017 Sum_probs=166.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.+.. +|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888886665 222221223344556677888888766543 3333333 66666666666555444566
Q ss_pred HHHHHHHHhcc-CC---CHhHHHH-HHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHH
Q 048766 319 EIADSMFRSLC-RK---NLVTWNA-MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393 (525)
Q Consensus 319 ~~A~~~~~~~~-~~---~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~ 393 (525)
+.+..-+++.. .+ +..++.. ....+...|++++|++++.+. .+.......+..+.+.++ ++.|.+.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R-~dlA~k~l 154 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNR-PDLAEKEL 154 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCC-HHHHHHHH
Confidence 66666665544 22 1122322 234566789999999988642 345666778889999999 99999999
Q ss_pred HHhhhhhCCCCChhHHHHHHHHH----hccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 394 ESMTKDYGIKPTVEHCCSMIRLM----GQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
+.|. .+..|. +...++.++ .-.+.+.+|..+|+++ ...+++.+.+.++.++...|++++|.+.++++++.
T Consensus 155 ~~~~---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 155 KNMQ---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHH---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHHH---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9997 445553 333344433 3345799999999999 44567788888889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHhhccCh-hHHHHHHHHHHHcCC
Q 048766 468 EGDSDYVYVMLCNLYTSHGNW-DVASVMRNFMRERGL 503 (525)
Q Consensus 468 ~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~ 503 (525)
+|.++.++..++.+....|+. +.+.+++.++.+..+
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 999999999999999999998 667788888877543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-07 Score=86.60 Aligned_cols=366 Identities=15% Similarity=0.100 Sum_probs=190.1
Q ss_pred HhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC-------------CCcccHHHHHHHH
Q 048766 13 SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-------------PSVVSWNSLISGY 79 (525)
Q Consensus 13 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~ll~~~ 79 (525)
|...|+.+.|.+-...+. +..+|..+.++|.+..+.+-|.-.+..|.. ++ ..--.+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 445577777665555443 334777788888877777777666655543 21 1111122223
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHH
Q 048766 80 VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAI 159 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 159 (525)
...|..++|..+|++-++ |..|=..|-..|.|++|.++-+.=-.. .=..+|......+-..+|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHH
Confidence 455777777777777665 233334455667777777665432111 11235555566666677777777
Q ss_pred HHHhhccCC-----------------------ChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 048766 160 GVFGEMIDK-----------------------DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGD 216 (525)
Q Consensus 160 ~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 216 (525)
+.|++.-.+ |...|.-...-+-..|+.+.|+.+|.... -|-+++...|-.|+
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccC
Confidence 777665221 22222222333334555555555555432 23444445555555
Q ss_pred hHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh---------------cccc
Q 048766 217 IEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI---------------AGLS 281 (525)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~---------------~~~~ 281 (525)
.++|-++-++- .|......+.+.|-..|++.+|..+|...+. +...|+.| +...
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 55555555442 3444455566666666666666666655432 11111111 1112
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--------------CCCHhHHHHHHHHHHhcC
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--------------RKNLVTWNAMITGYARNG 347 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~l~~~~~~~~ 347 (525)
+.-.|-.+|++.- .. +...+..|-+.|.+.+|.++-=.-. ..|+...+.-...+....
T Consensus 1023 d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 2223333333221 00 1112334555666555544321111 235555555566667777
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChH
Q 048766 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 423 (525)
++++|..++-..++ |...+..|...+ ..--.++-+.|.-...-.|+ ......+.+.+.++|.+.
T Consensus 1095 qyekAV~lL~~ar~----------~~~AlqlC~~~n--v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLARE----------FSGALQLCKNRN--VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHhcCC--CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 77777777776665 445555555544 34444444444322112233 334566777888888888
Q ss_pred HHHHHHHHhC
Q 048766 424 RAQRMIRELG 433 (525)
Q Consensus 424 ~A~~~~~~~~ 433 (525)
.|.+-|..++
T Consensus 1163 ~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1163 AATKKFTQAG 1172 (1416)
T ss_pred HHHHHHhhhh
Confidence 8887776653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-07 Score=86.50 Aligned_cols=384 Identities=11% Similarity=0.094 Sum_probs=217.0
Q ss_pred CcccHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHc-c--------cC
Q 048766 68 SVVSWNSLIS--GYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKY-S--------LE 136 (525)
Q Consensus 68 ~~~~~~~ll~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 136 (525)
|..+-..++. .|..-|+.+.|.+-++..+. ...|..+.+.|.+.++++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4444444543 34556777777766655542 345667777777666666555444333221 0 01
Q ss_pred CCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC-CCcchHHHHHHHHHhcC
Q 048766 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-PDTISYNEVINGIAQFG 215 (525)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~ 215 (525)
++ ..-..........|.+++|+.+|++...- ..|=..|...|.+++|.++-+.-.. .-..||.....-+...+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 11 12222233345667888888888776553 3344456667888888777665422 22345666666677778
Q ss_pred ChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 048766 216 DIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIK 295 (525)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 295 (525)
|.+.|++.|++...+-...+..|. .++.....+.+.+. |...|.....-+...|+.+.|+.+|....+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 888888888765433222222221 12333333333332 335555566666677888888887776654
Q ss_pred hCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC----C-CCCHh
Q 048766 296 QGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD----L-QPDSV 370 (525)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~p~~~ 370 (525)
|-++++..|-.|+.++|.++-++- .|......+.+.|-..|++.+|...|.+...-.+ . ..|.
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~- 1008 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM- 1008 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH-
Confidence 335666667778888887776543 4555666677888888888888888876654110 0 0000
Q ss_pred HHHHHHHHHc-CCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHH-------------hCCCC
Q 048766 371 TFLNVLAACS-HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE-------------LGFGS 436 (525)
Q Consensus 371 ~~~~l~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------~~~~~ 436 (525)
-..|...+. ..+.+.-.|-++|++. |.. ...-+..|-++|.+.+|+++--+ +....
T Consensus 1009 -~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1009 -KDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred -HHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 001111111 1121144455555543 211 22334567788888877776321 12334
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc----------------------CC---------ChhHHHHHHHHHhhc
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLE----------------------GD---------SDYVYVMLCNLYTSH 485 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------------p~---------~~~~~~~l~~~~~~~ 485 (525)
|+..+......+....++++|..++-.+.+.. |. ....+..++..|.++
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 56666666777777778888877654433210 21 124567889999999
Q ss_pred cChhHHHHHHHH
Q 048766 486 GNWDVASVMRNF 497 (525)
Q Consensus 486 g~~~~A~~~~~~ 497 (525)
|.|..|.+-|.+
T Consensus 1159 G~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQ 1170 (1416)
T ss_pred cchHHHHHHHhh
Confidence 999988876654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-06 Score=86.22 Aligned_cols=328 Identities=11% Similarity=0.104 Sum_probs=166.7
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChH
Q 048766 7 FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYR 86 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 86 (525)
..|..-+-+.+++..-..+++..++.| ..++.++++|...|..+++-.+- .+.+- ..-=+..+.-||...++-
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN----~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKEN----PYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcccC----CcchhhHHhhhhcccCCc
Confidence 345555666778888888899999998 77899999999999877653221 11111 111112222233333222
Q ss_pred HHHHHHHHHHh----cCCCCCHhhHHHHHHHHcccCChH-----------HHHHHHHHHHHcccC--CCcchhhHHHHHH
Q 048766 87 KALNLFVELER----SEIYADAYSFTSALAACGQLGSLQ-----------LGMAIHSKIVKYSLE--RGVVIANCLIDMY 149 (525)
Q Consensus 87 ~A~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~-----------~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 149 (525)
-|.-.+++-.- -++.-....|....+-+.+..+.+ --+++.++.++.+++ .|+.-....+.++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 22111110000 000000111111111111111111 112333344333322 2333444455555
Q ss_pred HhcCCHHHHHHHHhhcc-CCChh-----hHHH---------------------------HHHHHHhCCChHHHHHHHhcC
Q 048766 150 GKCGSVEDAIGVFGEMI-DKDII-----SWNS---------------------------VIAASARNGNLELAFGFLHRL 196 (525)
Q Consensus 150 ~~~g~~~~a~~~~~~~~-~~~~~-----~~~~---------------------------l~~~~~~~~~~~~a~~~~~~~ 196 (525)
...+-..+-+++++++. ++++. .-+. +.......+-+++|..+|++.
T Consensus 995 MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh
Confidence 55555555566655552 22111 1111 223333444455555555544
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
. .+......|+ -.-+.++.|.+.-++..+ +..|..+..+-.+.|...+|.+-|-+. -|+..|..++..
T Consensus 1075 ~-~n~~A~~VLi---e~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~ 1142 (1666)
T KOG0985|consen 1075 D-MNVSAIQVLI---ENIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDV 1142 (1666)
T ss_pred c-ccHHHHHHHH---HHhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHH
Confidence 1 1111111111 123444555555444433 346888888888888888887766432 256678888888
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF 356 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 356 (525)
+.+.|.+++-..++...++..-.|.+. +.|+-+|++.+++.+.++++. .||......+.+-|...+.++.|.-+|
T Consensus 1143 a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1143 ASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 888888888888887777766555543 457778888888777666543 445444455555555555555555444
Q ss_pred HH
Q 048766 357 EQ 358 (525)
Q Consensus 357 ~~ 358 (525)
..
T Consensus 1218 ~~ 1219 (1666)
T KOG0985|consen 1218 SN 1219 (1666)
T ss_pred HH
Confidence 43
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-07 Score=88.69 Aligned_cols=442 Identities=12% Similarity=0.066 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HhhHHHHHH
Q 048766 39 FVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYAD---AYSFTSALA 112 (525)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~ 112 (525)
..|..|...|+...+...|.+.|+...+ .+..++......|++..+++.|..+.-..-+. .|- ...|...--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccc
Confidence 3566677777766677777777776665 34456666777777777777777763222221 111 112222223
Q ss_pred HHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCCh---hhHHHHHHHHHhCCChHHH
Q 048766 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI---ISWNSVIAASARNGNLELA 189 (525)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 189 (525)
.+.+.++..++..-|+...... +.|...|..++.+|.++|.+..|.++|.+...-++ ..-.......+..|.+.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 3455667777777776666553 44666777777777777777777777766644222 2222233345567777777
Q ss_pred HHHHhcCC----------CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHH-HHHHhc-CC---hhHHHHH
Q 048766 190 FGFLHRLP----------NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSIL-TGYVNR-NR---VPEALHL 254 (525)
Q Consensus 190 ~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-~~~~~~-~~---~~~a~~~ 254 (525)
+..+..+. ..-..++..+...+.-.|-...|.++++.-. ..+...+ ...+.. -. ...|..+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asdac~~ 725 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASDACYI 725 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhHHHHH
Confidence 77766651 1112223333333333333333333333221 1111111 100000 00 1122222
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHhccccch---H---HHHHHHHHHHHhCCCchHHHHHHHHHHHHc----C---C-CHHH
Q 048766 255 FGEMQSKDVPMDEYTFSTMLSGIAGLSAL---T---WGMLIHSCVIKQGLDASIVVASALLDMYSK----C---G-QVEI 320 (525)
Q Consensus 255 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~---g-~~~~ 320 (525)
|-... .+ .|+.....++..-....+.. + -+.+.+-.-.+. ..+...+..++..|.+ . + +...
T Consensus 726 f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 726 FSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 22222 11 22222222222211112211 1 011111111111 1112222223322222 2 2 2345
Q ss_pred HHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHh
Q 048766 321 ADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESM 396 (525)
Q Consensus 321 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 396 (525)
|...+.... ..+..+|+.|.-. ...|++.-+...|-+-.. ..| ...+|..+.-.+....+ ++.|...|...
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---sep~~~~~W~NlgvL~l~n~d-~E~A~~af~~~ 876 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---SEPTCHCQWLNLGVLVLENQD-FEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh---ccccchhheeccceeEEeccc-HHHhhHHHHhh
Confidence 666666655 4567788887765 566788888887777666 445 56778787777888888 99999999988
Q ss_pred hhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCchhHHHHHHHHHhcCCChHHHHHHHHH-----
Q 048766 397 TKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSYGVVWRALLSASGACSDLDVARISAAE----- 463 (525)
Q Consensus 397 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----- 463 (525)
+ .+.|+ ...|..........|+.-++..+|..- +..++...|.....-....|++++-+...++
T Consensus 877 q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 877 Q---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred h---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 7 55664 444444444445678888888888752 4455666666655556667777666655544
Q ss_pred -----HHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 464 -----VIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 464 -----~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
.+...|+...+|...+....+.+.+.+|..+..++.
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444559999999999999999999999988887763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.4e-07 Score=83.52 Aligned_cols=260 Identities=11% Similarity=-0.013 Sum_probs=146.1
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH---HHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST---MLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
..+...|++++|.+.+++..+.. +.+...+.. ........+....+...+.. .....+........+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 34556777788887777776652 223333331 11111223344444444433 11112223344445566777888
Q ss_pred CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHHcCCCCCcchHHH
Q 048766 317 QVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSE 391 (525)
Q Consensus 317 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~a~~ 391 (525)
++++|...+++.. +.+...+..+...+...|++++|+..+++........|+. ..+..+...+...|+ +++|.+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD-YEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC-HHHHHH
Confidence 8888888888775 3345567777778888888888888888877632111222 234466677777887 888888
Q ss_pred HHHHhhhhhCCCCChhHH-H--HHHHHHhccCChHHHHHH--H-HHh-CCCCc---hhHHHHHHHHHhcCCChHHHHHHH
Q 048766 392 YFESMTKDYGIKPTVEHC-C--SMIRLMGQKGEVWRAQRM--I-REL-GFGSY---GVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
++++........+..... . .+...+...|....+.+. + ... +..+. .........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888765321111111111 1 223333334433322222 1 111 11011 112224566677888999999998
Q ss_pred HHHHhhc-C--------CChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 462 AEVIKLE-G--------DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 462 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+.+.... . .........+.++...|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876633 1 123345567777889999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-07 Score=77.83 Aligned_cols=314 Identities=10% Similarity=0.022 Sum_probs=207.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHH-HHHHc
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQ--P-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSA-LAACG 115 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~ 115 (525)
-+.+.+..+.+..++++|++++....+ | +....+.+...|....++..|.+.++++.. ..|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 456677777888999999999987766 3 566788888899999999999999999987 45766666543 24466
Q ss_pred ccCChHHHHHHHHHHHHcccCCCcc--hhhHHHHHHHhcCCHHHHHHHHhhccC-CChhhHHHHHHHHHhCCChHHHHHH
Q 048766 116 QLGSLQLGMAIHSKIVKYSLERGVV--IANCLIDMYGKCGSVEDAIGVFGEMID-KDIISWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 192 (525)
+.+.+..|..+...|... ++.. ....-.......+|+..+..++++... .+..+.+...-...+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 788999999999887543 2211 111111223357899999999999974 5666777777778899999999999
Q ss_pred HhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHhcCCC-----------------CCcc---------------cHHH
Q 048766 193 LHRLPN---PDTISYNEVINGIAQFGDIEDAIMILSSMPS-----------------PNSS---------------SWNS 237 (525)
Q Consensus 193 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------~~~~---------------~~~~ 237 (525)
|+.... -++..-..+.-+..+.|+.+.|.+...++.+ +|+. .+|.
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 998832 2333333455566778999999988877641 2221 1333
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQSKD-VPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
-...+.+.|+++.|.+.+-.|.-.. -..|+.|...+.-. ...+++.....-+..+...+ |....+|..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhH
Confidence 3444567888888888888775432 34566666554321 22344555555566666664 456677888888888888
Q ss_pred CHHHHHHHHHhccCC-----CHhHHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 317 QVEIADSMFRSLCRK-----NLVTWNAMITGYARNGDLTKVIELFEQLK 360 (525)
Q Consensus 317 ~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (525)
-++.|-.++.+-... +...|+.+=......-..+++.+-++.+.
T Consensus 325 yf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 325 YFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888877665432 22233332222222344555555554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-08 Score=87.49 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-CH---hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh---
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCR--K-NL---VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV--- 370 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--- 370 (525)
.....+..+...+...|+++.|...++.+.. | +. .++..+..++...|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR---LHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCCchH
Confidence 3455566666777777777777777776652 2 22 3556666777777777777777777776 344322
Q ss_pred -HHHHHHHHHcCC--------CCCcchHHHHHHHhhhhhCCCCCh-hHHHHHHHHHhccCChHHHHHHHHHhCCCCchhH
Q 048766 371 -TFLNVLAACSHT--------DIPFDKVSEYFESMTKDYGIKPTV-EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440 (525)
Q Consensus 371 -~~~~l~~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 440 (525)
++..+...+... |+ +++|.+.++.+.+. .|+. ..+..+..... .... . ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~--------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTA-AREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHH-HHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H--------HHH
Confidence 233444444433 44 66677777776643 3332 12211111100 0000 0 011
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDS---DYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
...+...+.+.|++++|+..++++++..|++ +.++..++.++...|++++|..+++.+....
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2245667889999999999999999987754 4789999999999999999999999887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-06 Score=75.18 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=138.2
Q ss_pred chHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHH---HHHhcCChHHHHHHHHHHHhcCCCCCHhhH-HHHH
Q 048766 36 SNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLIS---GYVQSGKYRKALNLFVELERSEIYADAYSF-TSAL 111 (525)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll 111 (525)
.++.-..-+...+.-.|++.+|+.-|....+.|+..|.++.+ .|...|+...|+.=+.+..+ ++||-..- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 456666778888888899999999999999888888877664 67888999999988888887 57774322 1223
Q ss_pred HHHcccCChHHHHHHHHHHHHcccCCC--cch------------hhHHHHHHHhcCCHHHHHHHHhhccCC---ChhhHH
Q 048766 112 AACGQLGSLQLGMAIHSKIVKYSLERG--VVI------------ANCLIDMYGKCGSVEDAIGVFGEMIDK---DIISWN 174 (525)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~ 174 (525)
..+.++|.++.|..-|+..++...... ... ....+..+...||...|+.....+++- |...+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 446789999999999999988752111 111 122344556678888888888777553 566677
Q ss_pred HHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC
Q 048766 175 SVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 229 (525)
.-..+|...|++..|+.-++.. ...++..+..+-..+-..|+.+.+....++..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 7777888888888887666555 556667777777777778888877777777665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-08 Score=81.70 Aligned_cols=152 Identities=9% Similarity=0.046 Sum_probs=115.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (525)
+..|...|+++.+....+.+.. |. . .+...++ .+++...++...+. -+.+...|..++..|...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~-~-------~~~~~~~-~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL-H-------QFASQQT-PEAQLQALQDKIRA--NPQNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc-c-------cccCchh-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHC
Confidence 3567788888887555543322 21 0 1122455 77777777777653 245788899999999999
Q ss_pred CChHHHHHHHHHh-CCCC-chhHHHHHHHHH-hcCCC--hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH
Q 048766 420 GEVWRAQRMIREL-GFGS-YGVVWRALLSAS-GACSD--LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 420 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
|++++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|+..
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999987 4444 466677777764 66676 59999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccCC
Q 048766 495 RNFMRERGLRKEA 507 (525)
Q Consensus 495 ~~~~~~~~~~~~~ 507 (525)
|+++.+...+.++
T Consensus 167 ~~~aL~l~~~~~~ 179 (198)
T PRK10370 167 WQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhhCCCCcc
Confidence 9999888765443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-05 Score=76.41 Aligned_cols=139 Identities=14% Similarity=0.207 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
+..|..+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|. +++-.+++.-.++. .-.|.+. ..|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~-~edLv~yL~MaRkk-~~E~~id--~eL 1172 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGK-YEDLVKYLLMARKK-VREPYID--SEL 1172 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCc-HHHHHHHHHHHHHh-hcCccch--HHH
Confidence 457888888888888888888877643 355678899999999999 99999998777665 5555544 568
Q ss_pred HHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHH
Q 048766 413 IRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 492 (525)
+-+|.+.++..+-.+++. .|+.......+.-|...|.++.|.-+|. +.+-|..|+..+...|++..|.
T Consensus 1173 i~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHH
Confidence 889999999888777664 4777778888888888899988887776 3455667777777777776665
Q ss_pred HH
Q 048766 493 VM 494 (525)
Q Consensus 493 ~~ 494 (525)
..
T Consensus 1241 D~ 1242 (1666)
T KOG0985|consen 1241 DA 1242 (1666)
T ss_pred HH
Confidence 43
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-08 Score=90.62 Aligned_cols=249 Identities=13% Similarity=0.067 Sum_probs=184.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHH
Q 048766 240 TGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319 (525)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (525)
.-+.+.|++.+|.-.|+..+..+ +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44567888888888888887763 4456788888888888888888888888888877 667888888888899999888
Q ss_pred HHHHHHHhccCCCH-hHHHHHH---------HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH
Q 048766 320 IADSMFRSLCRKNL-VTWNAMI---------TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 320 ~A~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a 389 (525)
.|..+++.-....+ ..|.... ..+..........++|-++.......+|+.....|.-.|.-.|+ +++|
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e-fdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE-FDRA 449 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH-HHHH
Confidence 88888876631110 0000000 11112222344555555555443244677777777777777888 9999
Q ss_pred HHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 390 SEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
..+|+.+. .++| |..+|+.|+-.+....+.++|+..|+++ ...|. ..++..|+.+|...|.+.+|...|-.++.
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 4466 5788999999999999999999999997 77777 57889999999999999999999999998
Q ss_pred hcCC----------ChhHHHHHHHHHhhccChhHHHHH
Q 048766 467 LEGD----------SDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 467 ~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
+.+. +-.+|..|=.++...++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7643 124677777777777777655444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.1e-08 Score=96.80 Aligned_cols=201 Identities=12% Similarity=0.114 Sum_probs=155.6
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC--------CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRK--------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV 370 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 370 (525)
|.+...|-..|....+.++.++|++++++..+. -...|.+++......|.-+...++|+++.+ ....-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq---ycd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ---YCDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH---hcchHH
Confidence 444556777777788888888888888877521 233677777777777888888888888887 333456
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchhHHHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGVVWRALLS 446 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~ 446 (525)
.|..|...|.+.+. +++|.++++.|.++++ .....|..++..+.+..+-++|..+++++ +...........+.
T Consensus 1532 V~~~L~~iy~k~ek-~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEK-NDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhc-chhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 67788888888888 8899999999888655 66777888888888888888888888876 32233445556666
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
.-.+.||.+++..+|+..+...|.-...|..+++.-.++|+.+.++.+|+++...++.+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 77788899999999998888888888888888888888899999999998888877654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=80.55 Aligned_cols=95 Identities=12% Similarity=-0.142 Sum_probs=57.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+..++..+...|++++|...|+.+ ...| +...|..++.++...|++++|+..|+++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444555566666666666666654 2222 34555666666666666666666666666666666666666666666666
Q ss_pred ChhHHHHHHHHHHHcCC
Q 048766 487 NWDVASVMRNFMRERGL 503 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~ 503 (525)
++++|+..|++..+..+
T Consensus 107 ~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 107 EPGLAREAFQTAIKMSY 123 (144)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 66666666666655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-06 Score=89.49 Aligned_cols=324 Identities=12% Similarity=-0.016 Sum_probs=207.6
Q ss_pred HHHHhCCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHhcCCC----CC---c-----ccHHHHHHH
Q 048766 178 AASARNGNLELAFGFLHRLP----NPDTISYNEVINGIAQFGDIEDAIMILSSMPS----PN---S-----SSWNSILTG 241 (525)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~ 241 (525)
......|+++.+...+..++ ..++.........+...|+++++...+..... .+ . .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34556778888878877762 12333444455566778899998888765431 11 1 112223345
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHhccccchHHHHHHHHHHHHh----CCC-chHHHHHHHHHHH
Q 048766 242 YVNRNRVPEALHLFGEMQSKDVPMDE----YTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD-ASIVVASALLDMY 312 (525)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~ 312 (525)
+...|++++|...+++....-...+. .....+...+...|+++.|...+...... +.. ........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66789999999999987763111121 23344555677889999999988887643 211 1123455667778
Q ss_pred HcCCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCC--HhHHHHHHHH
Q 048766 313 SKCGQVEIADSMFRSLCR-------K----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPD--SVTFLNVLAA 378 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~--~~~~~~l~~~ 378 (525)
...|+++.|...+++... + ....+..+...+...|++++|...+++...... ..+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999988877641 1 112344555667778999999999988765310 1122 3334445566
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHH-----HHHHHHHhccCChHHHHHHHHHhCCC--Cchh----HHHHHHHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHC-----CSMIRLMGQKGEVWRAQRMIRELGFG--SYGV----VWRALLSA 447 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~ 447 (525)
....|+ +++|.+.++..............+ ...+..+...|+.+.|...+...... .... .+..+..+
T Consensus 622 ~~~~G~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 622 SLARGD-LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHcCC-HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 778888 999999888875421111111111 11123445689999999998776211 1111 13456677
Q ss_pred HhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 448 SGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+...|++++|...+++++... +....++..++.++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888999999999999998753 1223467788899999999999999999887754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-06 Score=79.69 Aligned_cols=197 Identities=9% Similarity=-0.000 Sum_probs=119.0
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CCH--hHHHHHHH
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-----KNL--VTWNAMIT 341 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~l~~ 341 (525)
....+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+ ++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33445556667777777777777777765 44566677778888888888888888887653 121 23556778
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCHhHH-H--HHHHHHcCCCCCcchHHHH--HHHhhhhhCCCC--ChhHHHHHHH
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTF-L--NVLAACSHTDIPFDKVSEY--FESMTKDYGIKP--TVEHCCSMIR 414 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~--~~~~~~~l~~ 414 (525)
.+...|++++|+.++++........+..... + .++.-+...|. ...+.+. +...... ..+. ........+.
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH-VDVGDRWEDLADYAAW-HFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC-CChHHHHHHHHHHHHh-hcCcccchHHHHHHHH
Confidence 8888999999999999886532011222211 1 33333444443 3333332 1111111 1111 1122235667
Q ss_pred HHhccCChHHHHHHHHHh---CCC-C-c------hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 415 LMGQKGEVWRAQRMIREL---GFG-S-Y------GVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~---~~~-~-~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
++...|+.++|...++.+ ... + . .........++...|++++|.+.+..++...
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 778899999999999886 111 0 1 1122233445678999999999999998754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-05 Score=70.82 Aligned_cols=394 Identities=11% Similarity=0.100 Sum_probs=206.9
Q ss_pred HHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh
Q 048766 29 ILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--P-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAY 105 (525)
Q Consensus 29 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 105 (525)
-++.+ |-|+.+|..|++-+... .++++++.++++.. | ....|..-|+.-.+..+++....+|.+.... ..+..
T Consensus 12 rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlD 87 (656)
T KOG1914|consen 12 RIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLD 87 (656)
T ss_pred HHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHh
Confidence 34444 77999999999988766 99999999999876 4 4557899999999999999999999998764 34566
Q ss_pred hHHHHHHHHccc-CChHH----HHHHHHHH-HHcccCC-CcchhhHHHHHH---------HhcCCHHHHHHHHhhccCC-
Q 048766 106 SFTSALAACGQL-GSLQL----GMAIHSKI-VKYSLER-GVVIANCLIDMY---------GKCGSVEDAIGVFGEMIDK- 168 (525)
Q Consensus 106 ~~~~ll~~~~~~-~~~~~----a~~~~~~~-~~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~- 168 (525)
.|...|.--.+. +.... ..+.|+-. .+.|+.+ +..+|+..+..+ ..+.+++...++++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 676666654332 23222 23334333 3445443 334555555433 2333566677788777442
Q ss_pred --Ch-------hhHHHHHHH-------HHhCCChHHHHHHHhcC--------------CCCCc-------chHHHHHHHH
Q 048766 169 --DI-------ISWNSVIAA-------SARNGNLELAFGFLHRL--------------PNPDT-------ISYNEVINGI 211 (525)
Q Consensus 169 --~~-------~~~~~l~~~-------~~~~~~~~~a~~~~~~~--------------~~~~~-------~~~~~l~~~~ 211 (525)
+. ..|..=++. --+...+..|.++++++ +++.+ ..|..+|.--
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 11 122111111 11223355566655554 01100 0122222111
Q ss_pred HhcC------Ch--HHHHHHHhcCC---CCCcccHHHH-------HHHHHhcCC-------hhHHHHHHHHHhhCCCCCC
Q 048766 212 AQFG------DI--EDAIMILSSMP---SPNSSSWNSI-------LTGYVNRNR-------VPEALHLFGEMQSKDVPMD 266 (525)
Q Consensus 212 ~~~~------~~--~~a~~~~~~~~---~~~~~~~~~l-------~~~~~~~~~-------~~~a~~~~~~m~~~~~~~~ 266 (525)
-..+ .. ....-++++.. --....|..- -+.+...|+ .+++..+++...+.-..-+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 00000000000 0011111111 112222222 3455555555544322334
Q ss_pred HHHHHHHHHHhc---cccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CCHhHHHH
Q 048766 267 EYTFSTMLSGIA---GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-----KNLVTWNA 338 (525)
Q Consensus 267 ~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 338 (525)
..+|..+..--. ..+..+....++..+...-...-..+|-.+++.-.+..-+..|+.+|.++.+ .++....+
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 444444333211 2223556666666665544333334555666666666677777777776652 24445556
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhH-HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHHHH
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVT-FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRL 415 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 415 (525)
++.-|+ .++..-|.++|+--.+ .-+|... ....+.-+...++ -..+..+|++.... +++|+ ...|..+++-
T Consensus 408 ~mEy~c-skD~~~AfrIFeLGLk---kf~d~p~yv~~YldfL~~lNd-d~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 408 LMEYYC-SKDKETAFRIFELGLK---KFGDSPEYVLKYLDFLSHLND-DNNARALFERVLTS-VLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHh-cCChhHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhCc-chhHHHHHHHHHhc-cCChhhhHHHHHHHHHH
Confidence 665554 3566777777776554 2333322 2344555555565 66677777777665 55554 4567777776
Q ss_pred HhccCChHHHHHHHHHh
Q 048766 416 MGQKGEVWRAQRMIREL 432 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~ 432 (525)
=..-|+...+.++-++.
T Consensus 482 ES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHhcccHHHHHHHHHHH
Confidence 67777777777776654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.7e-08 Score=77.63 Aligned_cols=124 Identities=11% Similarity=-0.014 Sum_probs=101.0
Q ss_pred HHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
..++++..+ ..|+. +......+...|+ +++|...|+.+.. +.| +...|..++.++.+.|++++|+..|++
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~-~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGD-YSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456677766 66764 4456777788888 9999999998874 345 678888899999999999999999998
Q ss_pred h-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 432 L-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 432 ~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
. ... .++..+..++.++...|++++|+..|+++++..|+++..+...+.+....
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 7 333 45778888999999999999999999999999999999998887776543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-05 Score=82.55 Aligned_cols=328 Identities=11% Similarity=-0.019 Sum_probs=171.4
Q ss_pred HcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC----CC---h-----hhHHHHHHHHH
Q 048766 114 CGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID----KD---I-----ISWNSVIAASA 181 (525)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~~~ 181 (525)
....|++..+...+..+.......+..........+...|+++++...+..... .+ . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666665542211122233334445555667888887777765521 11 1 11112233445
Q ss_pred hCCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 182 RNGNLELAFGFLHRLPN--PDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259 (525)
Q Consensus 182 ~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 259 (525)
..|++++|...+++... +....+. -....+.+...+...|++++|...+++..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------~~~a~~~lg~~~~~~G~~~~A~~~~~~al 518 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYS-------------------------RIVATSVLGEVHHCKGELARALAMMQQTE 518 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHH-------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66777777666655411 1100000 00112333444455555555555555544
Q ss_pred hCCC---CC--CHHHHHHHHHHhccccchHHHHHHHHHHHHh----CCC--c-hHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 048766 260 SKDV---PM--DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD--A-SIVVASALLDMYSKCGQVEIADSMFRS 327 (525)
Q Consensus 260 ~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 327 (525)
...- .+ ...++..+...+...|+++.|...+.+.... +.. + ....+..+...+...|+++.|...++.
T Consensus 519 ~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 519 QMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3100 01 1122333344455566666666655554332 111 1 122333445556666888877777766
Q ss_pred ccC------C--CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHH-----HHHHHHHcCCCCCcchHHHHHH
Q 048766 328 LCR------K--NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTF-----LNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 328 ~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
... + ....+..+...+...|+++.|.+.+++.............+ ...+..+...|+ .+.|.+.+.
T Consensus 599 al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~l~ 677 (903)
T PRK04841 599 GLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD-KEAAANWLR 677 (903)
T ss_pred hHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 531 1 12234445566777888888888887775421011110001 011233344666 888888876
Q ss_pred HhhhhhCCCCCh----hHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHH
Q 048766 395 SMTKDYGIKPTV----EHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVVWRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 395 ~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
..... . .... ..+..+..++...|++++|...+++. +...+ ..+...+..++...|+.++|...+.
T Consensus 678 ~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 678 QAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred hcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65431 1 1111 11345677888899999999988875 22222 2345566778889999999999999
Q ss_pred HHHhhcC
Q 048766 463 EVIKLEG 469 (525)
Q Consensus 463 ~~~~~~p 469 (525)
+++++..
T Consensus 756 ~Al~la~ 762 (903)
T PRK04841 756 EALKLAN 762 (903)
T ss_pred HHHHHhC
Confidence 9998763
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-06 Score=76.37 Aligned_cols=211 Identities=10% Similarity=0.036 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCCh--hHHHHH
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG-QVEIADSMFRSLC---RKNLVTWNAMITGYARNGDL--TKVIEL 355 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~ 355 (525)
+.++|......+++.+ +.+..++..-..++...| +++++...++.+. +.+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444433 223333333333444444 4566666666554 23444555444444444542 566777
Q ss_pred HHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc---CCh----HHHHH
Q 048766 356 FEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK---GEV----WRAQR 427 (525)
Q Consensus 356 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~ 427 (525)
++++.+ ..| |..+|.....++...|. ++++++.++++++. . .-+...|+.....+.+. |.. +++++
T Consensus 131 ~~kal~---~dpkNy~AW~~R~w~l~~l~~-~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 131 TRKILS---LDAKNYHAWSHRQWVLRTLGG-WEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHH---hCcccHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777776 445 45666666666666776 77777777777653 1 22344555555444433 222 34555
Q ss_pred HHHHh-CCCCc-hhHHHHHHHHHhcC----CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc---------------
Q 048766 428 MIREL-GFGSY-GVVWRALLSASGAC----SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG--------------- 486 (525)
Q Consensus 428 ~~~~~-~~~~~-~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------------- 486 (525)
...++ ...|+ ...|..+...+... +...+|.+.+.+++..+|.++.++..|+++|....
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 55443 33443 55676666666552 44567888888888888988999999999987642
Q ss_pred ---ChhHHHHHHHHHH
Q 048766 487 ---NWDVASVMRNFMR 499 (525)
Q Consensus 487 ---~~~~A~~~~~~~~ 499 (525)
..++|.++++.+.
T Consensus 285 ~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 285 ELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3467888888873
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.5e-07 Score=75.75 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHh
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG 417 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 417 (525)
+-..+...|+-+....+...... ..| |..............|+ +..|...+++... .-++|...|+.+.-+|.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~-~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGN-FGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcc-hHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 33444444444444444444333 122 22233334444444554 5555555555443 22334455555555555
Q ss_pred ccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 418 QKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
+.|++++|..-|.+. ... .++...+.+...+.-.||++.|..++..+....+.+..+-..|+.+....|+.++|..+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555555443 111 223344444444455555555555555555544445555555555555555555554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-06 Score=81.84 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=103.1
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
+|-...-..+...+...|-...|..+|+++ ..|...+..|...|+..+|..+..+..+ .+|+..-|..+...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhh
Confidence 444455556666677777777777777655 3555666677777777777777766666 35666666666655
Q ss_pred HcCCCCCcchHHHHHHHhhhhh-------------------------CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 379 CSHTDIPFDKVSEYFESMTKDY-------------------------GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~-------------------------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.....- +++|.++.+....+. .+.| ...+|..++-+..+.+++..|.+.|...
T Consensus 467 ~~d~s~-yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 467 LHDPSL-YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred ccChHH-HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 555444 555555554433210 1111 2334444444444455555555544443
Q ss_pred -CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 433 -GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 433 -~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
...|+ ...|+.+..+|.+.|+-.+|...++++++.+-++...|.+...+...-|.|++|++.+.++.+
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 22333 344555555555555555555555555555444455555555555555555555555554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-06 Score=85.39 Aligned_cols=138 Identities=10% Similarity=-0.005 Sum_probs=96.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHC 409 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 409 (525)
+...+-.|.....+.|++++|..+++...+ ..|+ ......+...+.+.++ +++|...+++... ..| +....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~---~~p~~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYFS---GGSSSAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhh---cCCCCHHHH
Confidence 466677777777778888888888888877 6775 4555566677777777 8888888877764 244 45566
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
..+..++...|++++|..+|+++ ...|+ ...+..+..++...|+.++|...|+++++...+-...|.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 67777777888888888888876 22333 567777777777788888888888888776643334433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=72.40 Aligned_cols=98 Identities=12% Similarity=-0.019 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+......+...+...|++++|.++|+-+ ...| +...|..|+..+...|++++|+..|.++..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445566777788999999999999987 4444 4677889999999999999999999999999999999999999999
Q ss_pred hhccChhHHHHHHHHHHHcC
Q 048766 483 TSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~ 502 (525)
...|+.+.|++.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-05 Score=67.31 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHc
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (525)
++..++-+...+|+.+.|...++.+... +...-..-...+-..|++++|+++|+...+.. +.|..++..-+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHH
Confidence 3455566667778888888888877522 21111111223445789999999999999843 335677776677777
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhc---CCChH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGA---CSDLD 455 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~---~~~~~ 455 (525)
..|+ .-+|++-+....+ .+..|...|..+.+.|...|++++|.-.++++ -..| ++..+..+...+.- ..+..
T Consensus 132 a~GK-~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGK-NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCC-cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 7787 6688877777766 66889999999999999999999999999997 3334 45555666665543 34788
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHH
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
-|.++|.+++++.|.+...+..+.
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHH
Confidence 999999999999997666655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-06 Score=76.80 Aligned_cols=184 Identities=11% Similarity=-0.045 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC-c-hHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-CHh---H
Q 048766 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD-A-SIVVASALLDMYSKCGQVEIADSMFRSLCR--K-NLV---T 335 (525)
Q Consensus 264 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~ 335 (525)
......+..+...+...|+++.|...++.+.+.... + ....+..+..++.+.|+++.|...++.+.+ | +.. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667778888899999999999999999876522 1 234667788999999999999999999863 2 222 4
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChh
Q 048766 336 WNAMITGYARN--------GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407 (525)
Q Consensus 336 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 407 (525)
+..+..++... |+++.|.+.++++.. ..|+.......+... ..+... -..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~--------------~~~~~~-----~~~ 167 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRM--------------DYLRNR-----LAG 167 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHH--------------HHHHHH-----HHH
Confidence 55566666654 788999999999998 567643221111111 111000 001
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh----CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL----GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
....+...|.+.|++.+|+..+++. +..| ....+..++.++.+.|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1235677888999999999999987 2223 356788899999999999999999888877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-07 Score=72.44 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
......++..+...|++++|.+.++.+ .. +.+...+..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344566677777778888888887776 32 3345667777777777888888888888888888888888888888888
Q ss_pred hccChhHHHHHHHHHHHcCC
Q 048766 484 SHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|...+++..+..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICG 116 (135)
T ss_pred HcCCHHHHHHHHHHHHHhcc
Confidence 88888888888877777654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.6e-07 Score=84.35 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=157.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
...+...|-...|+.+|+ ....+..++.+|+..|+..+|..+..+..+ -+|++..|..+.+......-+
T Consensus 405 aell~slGitksAl~I~E---------rlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFE---------RLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHH---------hHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 334444444555544443 334555666666667766666666666655 356666676666666666666
Q ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 319 EIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 319 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
++|.++.+....+ +-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+-.+..+.++ ++.|.+.|....
T Consensus 474 EkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek-~q~av~aF~rcv 546 (777)
T KOG1128|consen 474 EKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEK-EQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhh-hHHHHHHHHHHh
Confidence 7777766655422 111112222346889999999998887 555 46778777778888888 999999999887
Q ss_pred hhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCCh
Q 048766 398 KDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSD 472 (525)
Q Consensus 398 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 472 (525)
...| +...|+.+..+|.+.|+-.+|...+.+. + ...+...|...+......|.+++|++++.+++.+. ..++
T Consensus 547 ---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 547 ---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred ---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 4466 5788999999999999999999999997 2 24456788888888899999999999999999865 2355
Q ss_pred hHHHHHHHHHhh
Q 048766 473 YVYVMLCNLYTS 484 (525)
Q Consensus 473 ~~~~~l~~~~~~ 484 (525)
.+...+.....+
T Consensus 624 ~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 624 EVLLIIVRTVLE 635 (777)
T ss_pred hhhHHHHHHHHh
Confidence 555555544433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-05 Score=71.74 Aligned_cols=117 Identities=9% Similarity=-0.007 Sum_probs=82.9
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDV 456 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 456 (525)
+...+. +++|+..++.+.+ ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+
T Consensus 316 ~~~~~~-~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQ-YDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcc-cchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 334555 7788888887775 33445666666777788888888888888776 44555 5566777778888888888
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 457 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
|+..+.+.+..+|+++..|..|+.+|...|+..+|.....+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 888888888888888888888888777777665555444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-06 Score=76.55 Aligned_cols=188 Identities=10% Similarity=0.034 Sum_probs=138.2
Q ss_pred HHHHcCCCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCC
Q 048766 310 DMYSKCGQVEIADSMFRSLCRK---NLVTWNAMITGYARNG-DLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDI 384 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 384 (525)
..+...+..++|.....++... +..+|+.....+...| ++++++..++++.+ ..| +..+|+.-...+.+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~---~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE---DNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH---HCCcchHHhHHHHHHHHHcCc
Confidence 3445567888899888888733 4456776666777777 67999999999998 455 44556655545555554
Q ss_pred C-cchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcC---CC----
Q 048766 385 P-FDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGAC---SD---- 453 (525)
Q Consensus 385 ~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~---~~---- 453 (525)
. .+++..+++++.+. .| +...|.....++.+.|+++++++.++++ .. ..+..+|+.....+.+. |.
T Consensus 122 ~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 1 36788889888753 44 6788888899999999999999999997 33 34466777666655443 22
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc----cChhHHHHHHHHHHHcCC
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSH----GNWDVASVMRNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~ 503 (525)
.++++....++++.+|+|..+|..+..++... ++..+|.+...+..+.++
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 35788888999999999999999999999883 455678888887766443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.8e-06 Score=69.79 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=99.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCC
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 382 (525)
..+-..+...|+-+....+..... ..|....+..+....+.|++..|+..+++.... -+||...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHHc
Confidence 445556666666666666665543 334445555677777777777777777777763 244567777777777777
Q ss_pred CCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHH
Q 048766 383 DIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARI 459 (525)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 459 (525)
|+ .+.|..-|.+..+. .| ++..++.+.-.|.-.|+++.|..++... .-..+..+-..+..+....|++++|..
T Consensus 148 Gr-~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GR-FDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cC-hhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 77 77777777777643 33 4555677777777777777777777765 222355666667777777777777776
Q ss_pred HHHHHH
Q 048766 460 SAAEVI 465 (525)
Q Consensus 460 ~~~~~~ 465 (525)
+..+-+
T Consensus 224 i~~~e~ 229 (257)
T COG5010 224 IAVQEL 229 (257)
T ss_pred hccccc
Confidence 655443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-05 Score=80.59 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
..++..+..+|-+.|+.++|.++++++. +.|+.+.|.+.-.|... +.++|++++.+....
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 3355556666666666666666666665 33455666666666666 666666666665541
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
+...++ +..+.++|.++... .+.+...+..+.+..... .+...-..++..+...|...+++++++
T Consensus 179 ~i~~kq-~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 179 FIKKKQ-YVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHhhhc-chHHHHHHHHHHhc--CcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 333344 66666666666542 111222222222211111 122233445555666777788899999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
.+++.+++.+|.|..+...++.+|. +.|.+
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 9999999999998888888888887 44444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.4e-05 Score=62.21 Aligned_cols=248 Identities=9% Similarity=0.026 Sum_probs=136.8
Q ss_pred hcCChHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHH-HH
Q 048766 213 QFGDIEDAIMILSSMPS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM-LI 289 (525)
Q Consensus 213 ~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 289 (525)
-.|.+..++..-..... .+...-.-+.++|...|.+..... ++.... .|....+..+.......++.+.-. .+
T Consensus 20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 34555555444333321 122223334455666665543332 222221 334444444444444444443333 33
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH
Q 048766 290 HSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369 (525)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 369 (525)
.+.+.......+......-...|+..|++++|.+.......-.....+ ...+.+..+.+-|.+.+++|.+ + .+.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---i-ded 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---I-DED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---c-chH
Confidence 444444444444444444556677888888888877763322322222 3445566777888888888876 2 345
Q ss_pred hHHHHHHHHHcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHH
Q 048766 370 VTFLNVLAACSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRA 443 (525)
Q Consensus 370 ~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 443 (525)
.|.+-|..++.+ .+. ...|.-+|+++.+ +..|++.+.+..+.++...|++++|..++++. ....++.++..
T Consensus 170 ~tLtQLA~awv~la~ggek-~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEK-IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchh-hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 566656555432 333 7777778888865 46777777777777777778888888777776 33445566655
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHhhcCCChh
Q 048766 444 LLSASGACSDL-DVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 444 l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~ 473 (525)
++..-...|.. +.-.+.+.+.....|.++.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 55554555543 4445556666666665543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5e-06 Score=69.92 Aligned_cols=153 Identities=10% Similarity=0.066 Sum_probs=111.6
Q ss_pred HHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcch
Q 048766 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDK 388 (525)
Q Consensus 309 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 388 (525)
+-.|...|+++.+..-.+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|+ +++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~-~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND-YDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC-HHH
Confidence 446777888777655443332221 01223567788888888887732 3467788888888889998 999
Q ss_pred HHHHHHHhhhhhCCCC-ChhHHHHHHHH-HhccCC--hHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHH
Q 048766 389 VSEYFESMTKDYGIKP-TVEHCCSMIRL-MGQKGE--VWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 389 a~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
|...|++..+ +.| +...+..++.+ +...|+ .++|.+++++. ...| +...+..++..+.+.|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998885 345 67778888886 467777 58999999987 4444 46778888889999999999999999
Q ss_pred HHHhhcCCChhHH
Q 048766 463 EVIKLEGDSDYVY 475 (525)
Q Consensus 463 ~~~~~~p~~~~~~ 475 (525)
++++..|.+..-+
T Consensus 169 ~aL~l~~~~~~r~ 181 (198)
T PRK10370 169 KVLDLNSPRVNRT 181 (198)
T ss_pred HHHhhCCCCccHH
Confidence 9999987555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-05 Score=80.84 Aligned_cols=129 Identities=9% Similarity=0.130 Sum_probs=83.7
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHH
Q 048766 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLC--RK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL 373 (525)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 373 (525)
.+.+...+..|..+..+.|.+++|+.+++.+. .| +......++..+.+.+++++|+..+++... ..|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 34556666667777777777777777777765 23 344556666677777777777777777776 4554 34444
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
.+..++...|. +++|..+|+++... .+-+...+..+..++.+.|+.++|...|++.
T Consensus 159 ~~a~~l~~~g~-~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 LEAKSWDEIGQ-SEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55556666676 77777777777642 2233566667777777777777777777765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00049 Score=63.92 Aligned_cols=394 Identities=11% Similarity=0.105 Sum_probs=227.5
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (525)
-|+.+|+.||+-+..+ .++++.+.++++... .+-....|..-|+.-....+++..+.+|.+-...- .+...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 4788999999987655 999999999999863 23346778888999999999999999999887764 4466666666
Q ss_pred HHHHh-cCCHHHH----HHHHhhccC------CChhhHHHHHHH---------HHhCCChHHHHHHHhcC-CCC------
Q 048766 147 DMYGK-CGSVEDA----IGVFGEMID------KDIISWNSVIAA---------SARNGNLELAFGFLHRL-PNP------ 199 (525)
Q Consensus 147 ~~~~~-~g~~~~a----~~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~-~~~------ 199 (525)
..-.+ .|+...+ .+.|+-... .+-..|+..+.- +..+.+++...++|+++ ..|
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54333 2333332 222222211 123345554433 33344567777888887 333
Q ss_pred ---CcchHHHHHHHH-------HhcCChHHHHHHHhcCCC---------C---Ccc---------cHHHHHHHHHhcCC-
Q 048766 200 ---DTISYNEVINGI-------AQFGDIEDAIMILSSMPS---------P---NSS---------SWNSILTGYVNRNR- 247 (525)
Q Consensus 200 ---~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~---------~---~~~---------~~~~l~~~~~~~~~- 247 (525)
|-..|..=++.. -+...+..|.++++++.. | ... .|-.+|.--...+-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111221112111 123345566666665431 1 111 13222221111110
Q ss_pred -------hhHHHHHHHHHh-hCCCCCCHHHH-HHHH----HHhccccc-------hHHHHHHHHHHHHhCCCchHHHHHH
Q 048766 248 -------VPEALHLFGEMQ-SKDVPMDEYTF-STML----SGIAGLSA-------LTWGMLIHSCVIKQGLDASIVVASA 307 (525)
Q Consensus 248 -------~~~a~~~~~~m~-~~~~~~~~~~~-~~l~----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 307 (525)
.....-.+++.+ -.+..|+..-. ...+ ..+...|+ .+++..+++.....-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111122211 11222222110 0000 01111222 3455555655554433334444544
Q ss_pred HHHHHHcCC---CHHHHHHHHHhccC----CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHH
Q 048766 308 LLDMYSKCG---QVEIADSMFRSLCR----KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAAC 379 (525)
Q Consensus 308 l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 379 (525)
+...-...- ..+....+++++.. .-..+|-.++..-.+..-...|..+|.++.+.+ ..+ ....+++++..+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHHHHHH
Confidence 443222222 24555556665541 123467778888888888889999999998887 666 677777888877
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh---CCCCc--hhHHHHHHHHHhcCCCh
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSY--GVVWRALLSASGACSDL 454 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~ 454 (525)
+... .+-|.++|+.-.+. +..++......++-+...++-..|..+|++. ...++ ...|..++.--...||.
T Consensus 413 cskD--~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 413 CSKD--KETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred hcCC--hhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 7654 58889999877764 3344555566777888888888999999887 22333 57888888888888999
Q ss_pred HHHHHHHHHHHhhcC
Q 048766 455 DVARISAAEVIKLEG 469 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p 469 (525)
..+.++-++....-|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 988888888776655
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-08 Score=54.32 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=28.8
Q ss_pred hCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCC
Q 048766 32 SGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP 65 (525)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 65 (525)
.|+.||..+|+.||..||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.6e-06 Score=67.42 Aligned_cols=165 Identities=15% Similarity=0.194 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH-HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL-AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 413 (525)
.|..++-+....|+.+.|...++++..+ + |.+.-...+- .-+-..|. +++|+++++.+.++ . +.|..++..-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~--f-p~S~RV~~lkam~lEa~~~-~~~A~e~y~~lL~d-d-pt~~v~~KRKl 127 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR--F-PGSKRVGKLKAMLLEATGN-YKEAIEYYESLLED-D-PTDTVIRKRKL 127 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh--C-CCChhHHHHHHHHHHHhhc-hhhHHHHHHHHhcc-C-cchhHHHHHHH
Confidence 4555666667789999999999998884 3 6543333332 23344566 99999999999975 2 33566676667
Q ss_pred HHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc---Ch
Q 048766 414 RLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG---NW 488 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~ 488 (525)
-.....|+.-+|++-+.+. .+..|...|..+...|...|++++|.-++++++-..|-++..+..++..+.-.| ++
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 7777889888999988886 777899999999999999999999999999999999999999999999876655 56
Q ss_pred hHHHHHHHHHHHcCCcc
Q 048766 489 DVASVMRNFMRERGLRK 505 (525)
Q Consensus 489 ~~A~~~~~~~~~~~~~~ 505 (525)
.-|+++|.+..+.....
T Consensus 208 ~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHHHHhChHh
Confidence 67889999988876643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-05 Score=79.42 Aligned_cols=229 Identities=13% Similarity=0.149 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHhccccchHHHHHHHHHHHHh-CCC---chHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-C-HhHHHHH
Q 048766 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLD---ASIVVASALLDMYSKCGQVEIADSMFRSLCRK-N-LVTWNAM 339 (525)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 339 (525)
+...|...|......++.++|..+.++++.. ++. --..+|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3344555555556666666666666666543 111 12345666666666667777778888887743 2 3467777
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (525)
...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++ -+.|..++.++.+...-.-........+.+-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne-~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNE-AEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88888888888888888888875 34456777788888888777 7888888888775311111344455556666788
Q ss_pred CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhH-HHHHHHHHhhccChhHHHHH
Q 048766 420 GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYV-YVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 420 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~-~~~l~~~~~~~g~~~~A~~~ 494 (525)
|+.+.+..+|+.. ..+.....|..++..-.++|+.+.+..+|++++.+. |...-. |..++..-...|+-+.+..+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 8888888888876 333346778888888888888888888888888876 433333 44444444455665554444
Q ss_pred HHH
Q 048766 495 RNF 497 (525)
Q Consensus 495 ~~~ 497 (525)
=.+
T Consensus 1694 Kar 1696 (1710)
T KOG1070|consen 1694 KAR 1696 (1710)
T ss_pred HHH
Confidence 333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-05 Score=65.82 Aligned_cols=245 Identities=10% Similarity=0.036 Sum_probs=157.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
++-+.-.|++..++..-....... -+...-..+.++|...|....... ++.... .+....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 344555677877776655544332 333344444556666665433322 111222 44445555555544444554
Q ss_pred HHHH-HHHHhccCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHH
Q 048766 319 EIAD-SMFRSLCRK----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYF 393 (525)
Q Consensus 319 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~ 393 (525)
+.-. ++.+.+..+ +......-...|+..|++++|++...... +......=...+.+..+ .+-|.+.+
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r-~d~A~~~l 160 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHR-FDLAEKEL 160 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4433 333333322 22222333456888999999999988622 12222233344556666 89999999
Q ss_pred HHhhhhhCCCCChhHHHHHHHHHh----ccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 394 ESMTKDYGIKPTVEHCCSMIRLMG----QKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
++|.. +. +..+.+.|..++. ..+...+|.-+|+++ +..|.+.+.+..+..+...|++++|..+++.++..
T Consensus 161 k~mq~---id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 161 KKMQQ---ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHc---cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99974 23 3455666666654 456799999999999 46788888888889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHhhccChhHHH-HHHHHHHHc
Q 048766 468 EGDSDYVYVMLCNLYTSHGNWDVAS-VMRNFMRER 501 (525)
Q Consensus 468 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 501 (525)
+|++|.++.+++.+-...|.-.++. +.+.++...
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999999988888876655 445555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=53.08 Aligned_cols=32 Identities=47% Similarity=0.649 Sum_probs=18.9
Q ss_pred ccCCCcchhhHHHHHHHhcCCHHHHHHHHhhc
Q 048766 134 SLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (525)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666655554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-05 Score=77.77 Aligned_cols=81 Identities=12% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcC
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNG 347 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (525)
..+..+..+|.+.|+.+++..+++++++.. +.++.+.+.+...|... ++++|.+++.+.. ..+...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhh
Confidence 345555555556666666666666665555 55556666666666666 6666666655442 2244455
Q ss_pred ChhHHHHHHHHHhh
Q 048766 348 DLTKVIELFEQLKT 361 (525)
Q Consensus 348 ~~~~a~~~~~~~~~ 361 (525)
++..+.++|.++..
T Consensus 184 q~~~~~e~W~k~~~ 197 (906)
T PRK14720 184 QYVGIEEIWSKLVH 197 (906)
T ss_pred cchHHHHHHHHHHh
Confidence 56666666666655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=78.06 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSAS 448 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 448 (525)
....++..+...+. ++.|+++++++.+. .|+ ....+++.+...++-.+|++++++. ..+.+...+......+
T Consensus 171 Lv~~Ll~~l~~t~~-~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQR-YDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhccc-HHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455666666777 88899988888754 354 4455778888888888888888876 3333566666677788
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
...++++.|+.+.+++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.4e-05 Score=68.44 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=60.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHH-HHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhcc
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLN-VLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQK 419 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 419 (525)
.+...|++++|+..++.+.. ..|+...|.. ....+...++ .++|.+.++++.. ..|+ ......+..+|.+.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANK-AKEAIERLKKALA---LDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhc
Confidence 34445566666666666555 3454433333 3334455555 6666666666553 2443 44445555666666
Q ss_pred CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 420 GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 420 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
|++.+|+.+++.. ..+.++..|..|..+|...|+..++....
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 6666666666654 33334555666666666666655554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.8e-07 Score=64.44 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=63.8
Q ss_pred cCChHHHHHHHHHh----CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH
Q 048766 419 KGEVWRAQRMIREL----GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 419 ~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
.|++++|+.+++++ +..++...+..++.++.+.|++++|+.++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57888899888887 2223556677789999999999999999999 778887878888889999999999999999
Q ss_pred HHHH
Q 048766 495 RNFM 498 (525)
Q Consensus 495 ~~~~ 498 (525)
+++.
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8763
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.4e-07 Score=61.12 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc-ChhHHHHHHHHHHHcC
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG-NWDVASVMRNFMRERG 502 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 502 (525)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678889999999999999999999999999999999999999999999 7999999999987754
|
... |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-06 Score=65.74 Aligned_cols=115 Identities=9% Similarity=-0.034 Sum_probs=90.5
Q ss_pred HHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 355 LFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
.++++.. ..|+ ......+...+...|+ +++|.+.++.+... .+.++..+..++..+.+.|++++|...+++.
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666 5564 3455667777888888 99999999988753 2446788888999999999999999999887
Q ss_pred CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 433 GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 433 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
...| +...+..+...+...|++++|+..++++++..|++....
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3334 467778888899999999999999999999999766543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.4e-06 Score=63.90 Aligned_cols=98 Identities=15% Similarity=-0.054 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHH
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDS---DYVYVML 478 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l 478 (525)
.++..++..+.+.|++++|.+.++++ ...|+ ...+..++..+.+.|++++|+..+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566677777888888888888776 22232 3455667778888888888888888888877764 4567788
Q ss_pred HHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 479 CNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+.++.+.|++++|...++++.+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 88888888888888888888777543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=59.23 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 444 LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 444 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++..+...|++++|+..|+++++..|+++.++..++.++...|++++|..+|+++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456677888999999999999998898888899999999999999999988888877654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=73.39 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=83.6
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLD 455 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~ 455 (525)
..+.++ +.+|+..|.+++ .+.| |+..|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 91 ~m~~~~-Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKD-YQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhh-HHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 345566 888888888887 4455 4566666777888888888888888775 55565 568899999999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhccChh
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 489 (525)
+|++.|+++++++|++......|-.+-.+.+.-+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999877777777665555444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.2e-06 Score=64.87 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch----hHHHHHH
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG----VVWRALL 445 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~ 445 (525)
|..++..+. .++ ...+.+.++.+.+.++-.+ .......+...+...|++++|...|+.+ ...|++ .....+.
T Consensus 15 y~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQALQ-AGD-PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-CCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444444443 455 6777777777776422111 1233444566777788888888888876 222332 2445567
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..+...|++++|+..++.. ...|..+..+...+.+|.+.|++++|+..|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7778888888888888663 233445677778888888888888888888754
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-06 Score=61.48 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
.+..++..+...|++++|...+++. ...|+ ...+..++..+...|++++|...++++.+..|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556777888899999999999986 33343 466777888888899999999999999999998888999999999999
Q ss_pred cChhHHHHHHHHHHHcC
Q 048766 486 GNWDVASVMRNFMRERG 502 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~ 502 (525)
|++++|...+.+..+.+
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999998887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00013 Score=57.76 Aligned_cols=154 Identities=8% Similarity=0.007 Sum_probs=118.8
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCC
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 421 (525)
+..+.=|++...+-..+-.+ ..|+...-..+..++...|+ ..+|...|++...- -+..|+.....+.++....++
T Consensus 65 a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr-~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 65 ALQQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGR-YHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhh-hhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhcc
Confidence 33444455555444444444 56777777788899999999 99999999998763 345578888889999999999
Q ss_pred hHHHHHHHHHh-CCCCc---hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 422 VWRAQRMIREL-GFGSY---GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 422 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
+.+|...++.+ ..+|. +.....+...+...|.+..|+..|+.++...| .+......+..+.++|+.++|..-+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999999987 22232 34455678889999999999999999999999 788888899999999998888776665
Q ss_pred HHHc
Q 048766 498 MRER 501 (525)
Q Consensus 498 ~~~~ 501 (525)
+.+.
T Consensus 219 v~d~ 222 (251)
T COG4700 219 VVDT 222 (251)
T ss_pred HHHH
Confidence 5543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=69.49 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=93.5
Q ss_pred CCChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhc---CCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 403 KPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGA---CSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
+-|...|..|+..|.+.|+...|...|... ... +++..+..+..++.. ..+..++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457899999999999999999999999987 223 345566666665533 336889999999999999999999999
Q ss_pred HHHHHhhccChhHHHHHHHHHHHcCCccCCcccEEE
Q 048766 478 LCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWIE 513 (525)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 513 (525)
|+..+...|++.+|...|+.|.+.....+|..+.++
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999999988777766543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-05 Score=74.50 Aligned_cols=107 Identities=8% Similarity=-0.005 Sum_probs=87.5
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcC
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGAC 451 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 451 (525)
-...+...|+ +++|+++|+++.+. .| +...|..++.+|.+.|++++|+..++++ ...| +...+..++.+|...
T Consensus 8 ~a~~a~~~~~-~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDD-FALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 3455667787 99999999999853 44 5778888899999999999999999987 4444 466788888999999
Q ss_pred CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
|++++|+..|+++++++|+++.....+..+..+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988877766654443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.6e-05 Score=71.09 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAAC 379 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 379 (525)
+......|+..+...++++.|..+++++.+.++.....++..+...++..+|++++.+..+ ..| +...+..-...|
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~---~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK---ENPQDSELLNLQAEFL 244 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 3445556777788889999999999999877777777788888888999999999999987 345 556666666678
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHhCCC
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIRELGFG 435 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (525)
...++ ++.|.++.+++.+ ..|+ ..+|..|+.+|...|++++|+..++.++..
T Consensus 245 l~k~~-~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKK-YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCC-HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 88888 9999999999984 4664 669999999999999999999999987533
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.6e-05 Score=60.33 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH----hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHH
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHC 409 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 409 (525)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|+ +++|...|+.+... .-.|. ....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~-~~d~~l~~~a~ 88 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALAN-APDPELKPLAR 88 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhh-CCCHHHHHHHH
Confidence 33444444 3677777777777777743 322 333345566777777 88888888887764 22222 2234
Q ss_pred HHHHHHHhccCChHHHHHHHHHhC-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIRELG-FGSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
..|...+...|++++|+..++... ....+..+...+..+...|++++|...|++++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 456777778888888888887752 22334556667777888888888888887763
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=64.69 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
...+..++..+...|++++|...+++. ...|+ ...+..++..+.+.|++++|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445677788888889999999998876 22222 3577888888999999999999999999999999999999999
Q ss_pred HHhhccC--------------hhHHHHHHHHHHHcCC
Q 048766 481 LYTSHGN--------------WDVASVMRNFMRERGL 503 (525)
Q Consensus 481 ~~~~~g~--------------~~~A~~~~~~~~~~~~ 503 (525)
++...|+ +++|.+++++..+.++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 9988777 4666677666665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-05 Score=67.59 Aligned_cols=167 Identities=13% Similarity=0.029 Sum_probs=109.4
Q ss_pred hHHHHHH-HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHH-HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH-
Q 048766 334 VTWNAMI-TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA-ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC- 410 (525)
Q Consensus 334 ~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 410 (525)
.+|..+- ..+.-.|++++|..+--...+ +.++..--..+-. .+...++ .+.+...|++.. .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk---ld~~n~~al~vrg~~~yy~~~-~~ka~~hf~qal---~ldpdh~~sk~ 241 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK---LDATNAEALYVRGLCLYYNDN-ADKAINHFQQAL---RLDPDHQKSKS 241 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh---cccchhHHHHhcccccccccc-hHHHHHHHhhhh---ccChhhhhHHh
Confidence 3444332 445667888888887777766 4444322222222 2233444 788888887766 4455432221
Q ss_pred ------------HHHHHHhccCChHHHHHHHHHh-CCCCc-----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 411 ------------SMIRLMGQKGEVWRAQRMIREL-GFGSY-----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 411 ------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
.=+.-..+.|++..|.+.+.+. .+.|+ ...|.....+..+.|+..+|+.--.++++++|.-.
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 1133445788888888888876 44444 44566666677788899999999999998888777
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 507 (525)
.++..-+.++...++|++|.+.+++..+....+.+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 77888888888888999998888887765544333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.3e-06 Score=54.47 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=52.3
Q ss_pred HHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 412 MIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
++..+.+.|++++|++.|+++ ...| +...+..++..+...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567888999999999999998 4445 577889999999999999999999999999999875
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=59.65 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRAL 444 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l 444 (525)
++..+...+...|+ +++|.+.++.+...+.-.+ ....+..++.++.+.|++++|...++.+ ...|+ ..++..+
T Consensus 4 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGD-YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34555666666777 7888888777765421111 1345666777888888888888888876 22233 4567777
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
+..+.+.|++++|...++++++..|+++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888888999999999999999999987765543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-06 Score=48.19 Aligned_cols=33 Identities=36% Similarity=0.650 Sum_probs=27.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSEIYAD 103 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~ 103 (525)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.7e-06 Score=47.34 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048766 70 VSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102 (525)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 102 (525)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.8e-06 Score=56.56 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=42.4
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.+.|++++|++.|++++...|+++.++..++.+|.+.|++++|.++++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3567888888888888888888888888888888888888888888877766544
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=55.74 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=50.4
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..+.+.+++++|+++++++++.+|+++..+...+.++...|++++|.+.+++..+.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45678888999999999999999988888888999999999999999999888877663
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.9e-05 Score=62.54 Aligned_cols=113 Identities=8% Similarity=-0.066 Sum_probs=84.3
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARIS 460 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~ 460 (525)
+..+...+..+.+..+..-....+..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444444322132334566777888888999999999999987 22222 34788889999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHh-------hccChhHHHHHHHHH
Q 048766 461 AAEVIKLEGDSDYVYVMLCNLYT-------SHGNWDVASVMRNFM 498 (525)
Q Consensus 461 ~~~~~~~~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 498 (525)
++++++..|.+...+..++.++. ..|++++|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999999999998988888888 888888666666544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0076 Score=58.07 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=147.5
Q ss_pred CCCHhhHHHHHHHHcccCChHHHHHHHHHHHHc-ccCC--------CcchhhHHHHHHHhcCCHHHHHHHHhhccCCChh
Q 048766 101 YADAYSFTSALAACGQLGSLQLGMAIHSKIVKY-SLER--------GVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171 (525)
Q Consensus 101 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 171 (525)
.|.+..|..+.......-.++.|+..|-+.... |++. +.....+=+.+ --|++++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 477778888777766666677777666443221 1110 11111222222 24899999999988877765
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhcC-CCC----CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 048766 172 SWNSVIAASARNGNLELAFGFLHRL-PNP----DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246 (525)
Q Consensus 172 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (525)
-+..+.+.|++-...++++.- .+. -...++.+...+.....|++|.+.+..... -...+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHH
Confidence 356677888888888888775 222 234688888888888899999888876432 234566677766
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFR 326 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 326 (525)
.+++...+-+.+ +-+....-.+..++.+.|.-++|.+.+-+. + .| .+.+..|...++|.+|.++-+
T Consensus 837 ~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 666665555443 334555666777888888888887665432 2 12 235567788888888888887
Q ss_pred hccCCCHhHHHH--------------HHHHHHhcCChhHHHHHHHHHhh
Q 048766 327 SLCRKNLVTWNA--------------MITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 327 ~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
...-|.+.+.-+ -|..+.+.|+.-+|.+++.+|.+
T Consensus 903 ~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 903 RFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 776554433211 13344556666666666666544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.8e-06 Score=47.07 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMD 266 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 266 (525)
.+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3689999999999999999999999999999887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0088 Score=54.75 Aligned_cols=190 Identities=13% Similarity=0.077 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCCHhHH-------HHHHHHHH----hcCChhHHHHHHHHHhhCCCCCCC
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTW-------NAMITGYA----RNGDLTKVIELFEQLKTVRDLQPD 368 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~-------~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~ 368 (525)
...+..++....+.++...|.+.+.-+. .|+...- ..+-+..+ ..-+..+=+.+|+.... ..-|
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs---~DiD 374 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS---YDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh---hccc
Confidence 3456666777777777777777666554 3322211 11111111 01122333445555544 3334
Q ss_pred HhHH-HHH---HHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHH----HHHhcc---CChH---HHHHHHHHhC
Q 048766 369 SVTF-LNV---LAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMI----RLMGQK---GEVW---RAQRMIRELG 433 (525)
Q Consensus 369 ~~~~-~~l---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~ 433 (525)
..-. ..+ ..-+-+.|..-++|+++++.+.+ +.+ |...-+... ..|..+ ..+. +-..++++.+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3221 122 22344555546788888888773 344 332222211 122211 1111 2223334445
Q ss_pred CCCc----hhHHHHHHHH--HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 434 FGSY----GVVWRALLSA--SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 434 ~~~~----~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..|- ...-+.|..+ +..+|++.++.-.-.-+.+..| ++.+|..+|-++....++++|..++..+
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4443 2334444443 4678999999998888889999 9999999999999999999999999765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.017 Score=57.56 Aligned_cols=208 Identities=12% Similarity=0.078 Sum_probs=136.1
Q ss_pred ccCchhhhhHHHHHHHHhCCCchHHHHHHHHHH--HHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHH
Q 048766 15 DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGF--YRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKAL 89 (525)
Q Consensus 15 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~ 89 (525)
..+++..|.+..+.+.+.. ||. .|...+.+ ..+.|+.++|..+++.... .|..+...+-..|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 5577888888888887663 333 22233343 3578999999988887654 46667888888888999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcC----------CHHHHH
Q 048766 90 NLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG----------SVEDAI 159 (525)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~a~ 159 (525)
.+|++.... -|+......+..++.+.+++.+-.++--++-+. ++-++..+=.+++.....- -..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999998874 577777888888889988888766666555553 3444444444454444321 123455
Q ss_pred HHHhhccCCC-----hhhHHHHHHHHHhCCChHHHHHHHhcC-----CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 048766 160 GVFGEMIDKD-----IISWNSVIAASARNGNLELAFGFLHRL-----PNPDTISYNEVINGIAQFGDIEDAIMILSSMP 228 (525)
Q Consensus 160 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 228 (525)
+.++.+.+.+ ..-.......+-..|++++|++++..- ...+...-+.-+..+...+++++..++-.++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 6666665543 111222334556688899998888332 33444455566777777888877776665554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.9e-06 Score=46.38 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPM 265 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 265 (525)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888876
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00018 Score=69.79 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=72.5
Q ss_pred cCCCHhHHHHHHHHHHh--c---CChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCC-------CcchHHHHHHH
Q 048766 329 CRKNLVTWNAMITGYAR--N---GDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDI-------PFDKVSEYFES 395 (525)
Q Consensus 329 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~-------~~~~a~~~~~~ 395 (525)
.+.|...|...+++... . ++...|+.+|++..+ ..|+. ..+..+..++..... ....+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 35577788887776543 2 236788999999988 77874 334333222211110 01122222222
Q ss_pred hhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
.........++..|..+.-.+...|++++|...++++ ...|+...|..++..+...|+.++|.+.+++++.++|.++
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 2111011223344555544444556666666666554 3444555555555555556666666666666666665444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.011 Score=54.16 Aligned_cols=424 Identities=10% Similarity=0.041 Sum_probs=239.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048766 24 QLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSV---VSWNSLISGYVQSGKYRKALNLFVELERSEI 100 (525)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 100 (525)
++-+++ +.+ |.|+.+|-.|++-|...+..++.+++++++..|-+ ..|...|++-...+++.....+|.+.....
T Consensus 30 rLRerI-kdN-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 30 RLRERI-KDN-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHHh-hcC-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 444444 333 78899999999999999999999999999998654 478888888888899999999999988754
Q ss_pred CCCHhhHHHHHHHHcccCCh------HHHHHHHHHHHH-cccCCC-cchhhHHHHHH---HhcCC------HHHHHHHHh
Q 048766 101 YADAYSFTSALAACGQLGSL------QLGMAIHSKIVK-YSLERG-VVIANCLIDMY---GKCGS------VEDAIGVFG 163 (525)
Q Consensus 101 ~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~---~~~g~------~~~a~~~~~ 163 (525)
.+...|...+.-..+.++. ....+.++-... .++.|- ...|+..+..+ -..|. ++.....+.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4566666666554443321 112233433333 344442 34455444332 23344 444555666
Q ss_pred hccCC---Ch-------hhHHHHHHH-----HHh--CCChHHHHHHHhcCC---------C-CCcchHHH----------
Q 048766 164 EMIDK---DI-------ISWNSVIAA-----SAR--NGNLELAFGFLHRLP---------N-PDTISYNE---------- 206 (525)
Q Consensus 164 ~~~~~---~~-------~~~~~l~~~-----~~~--~~~~~~a~~~~~~~~---------~-~~~~~~~~---------- 206 (525)
++... +. ..|..=++. +.. ..-+..|...++++. + -+..+++.
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 66432 11 111111111 111 111344555555441 0 11122222
Q ss_pred -HHHHHHhc-----CCh--HHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 048766 207 -VINGIAQF-----GDI--EDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275 (525)
Q Consensus 207 -l~~~~~~~-----~~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 275 (525)
.|.--... |+. +...-+++.... -....|..--..+...++-+.|++..+.-... .|+. -.-+-.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL--~~~lse 341 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSL--TMFLSE 341 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCch--heeHHH
Confidence 11111100 000 000011111110 12223333344556677888888876553332 3331 112223
Q ss_pred HhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---------cCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhc
Q 048766 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS---------KCGQVEIADSMFRSLCRKNLVTWNAMITGYARN 346 (525)
Q Consensus 276 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (525)
.+...++-+.+...|+.+... |.+-|. .-|+++.-.+++-.-...-...|...+....+.
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~ 410 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK 410 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 333444444444444433211 111111 123333222222222233345778888888888
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (525)
.-.+.|..+|-+..+.|-+.++...+++++..++.. + ...|..+|+.-... +..++..-...+..+.+.++-+.|.
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~-d-~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG-D-RATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC-C-cchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHH
Confidence 889999999999999885567888888888877764 4 78999999876653 3333333455667778899999999
Q ss_pred HHHHHh--CCC--CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 427 RMIREL--GFG--SYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 427 ~~~~~~--~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+|+.. ... .-...|..++.--..-|+...+..+-+++.+.-|.
T Consensus 487 aLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 487 ALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 999954 222 22567888888778889999998888888888884
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.5e-05 Score=68.69 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=68.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHh
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMG 417 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 417 (525)
...+...|+++.|++.|+++.+ ..| +...+..+..++...|+ +++|+..++++.+ +.| +...|..++.+|.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGN-FTEAVADANKAIE---LDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH---hCcCCHHHHHHHHHHHH
Confidence 4556677888888888888887 455 45666777777888888 8888888888874 344 4667777888888
Q ss_pred ccCChHHHHHHHHHh-CCCCchhH
Q 048766 418 QKGEVWRAQRMIREL-GFGSYGVV 440 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~~~~ 440 (525)
..|++++|+..|++. ...|+...
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHH
Confidence 888888888888876 44454433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.4e-05 Score=59.03 Aligned_cols=90 Identities=11% Similarity=-0.134 Sum_probs=75.1
Q ss_pred HHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
....-+...|++++|..+|+-+ -..-++..|..|+..+...+++++|+..|..+..++++||.++...+.++...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444556789999999999876 22334566788888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 048766 489 DVASVMRNFMRE 500 (525)
Q Consensus 489 ~~A~~~~~~~~~ 500 (525)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999888776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-05 Score=65.81 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=78.9
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+.-+.+.+++.+|+..|.++ ...|. ++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34566789999999999987 55555 56667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 048766 491 ASVMRNFMRERG 502 (525)
Q Consensus 491 A~~~~~~~~~~~ 502 (525)
|++.|++.++..
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 999998876643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00022 Score=63.83 Aligned_cols=134 Identities=9% Similarity=0.152 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC-CCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|......-.. .++ .+.|.++|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d-~~~A~~Ife~glk~--f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKD-PKRARKIFERGLKK--FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHH--HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 467788888888888999999999998754 2233444444433222 333 67799999999874 45677888889
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
++.+.+.|+.+.|..+|++. ..-+. ...|..++..-.+.|+.+....+.+++.+.-|++.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999987 22222 35888888888889999999999999999888643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.012 Score=52.78 Aligned_cols=282 Identities=14% Similarity=0.113 Sum_probs=196.1
Q ss_pred HHHHHHHHH--hcCChHHHHHHHhcCC---CCCcccHHHHHH--HHHhcCChhHHHHHHHHHhhCCCCCCHH--HHHHHH
Q 048766 204 YNEVINGIA--QFGDIEDAIMILSSMP---SPNSSSWNSILT--GYVNRNRVPEALHLFGEMQSKDVPMDEY--TFSTML 274 (525)
Q Consensus 204 ~~~l~~~~~--~~~~~~~a~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~ 274 (525)
|..|-.++. -.|+-..|.+.-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |... .+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 334444443 4677778877766544 345544444443 345679999999999999863 3221 233333
Q ss_pred HHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc-----CCCHh--HHHHHHHHHH---
Q 048766 275 SGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-----RKNLV--TWNAMITGYA--- 344 (525)
Q Consensus 275 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~--- 344 (525)
-...+.|..+.|.++-+..-..- +.-.....+.+...+..|+|+.|+++.+.-. +++.. .--.|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 34457899999999888877664 4446677889999999999999999998764 44433 1222332211
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 345 RNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
-..+...|...-.+..+ +.||. ..-.....++.+.|+ ..++-.+++.+-+. .|.+..+... .+.+.|+..
T Consensus 241 ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta 311 (531)
T COG3898 241 LDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKA---EPHPDIALLY--VRARSGDTA 311 (531)
T ss_pred hcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcH
Confidence 23467788888888777 88985 444556678889998 99999999999854 6776655432 334666643
Q ss_pred HHHHHHHHh----CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-cChhHHHHHHHH
Q 048766 424 RAQRMIREL----GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH-GNWDVASVMRNF 497 (525)
Q Consensus 424 ~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 497 (525)
.. -+++. ..+| +..+......+-...|++..|..-.+.+....| ....|..|+++-... ||-.++...+.+
T Consensus 312 ~d--RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LD--RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HH--HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 32 22222 2334 456777788888899999999999999999999 778899999987665 999999999987
Q ss_pred HHHc
Q 048766 498 MRER 501 (525)
Q Consensus 498 ~~~~ 501 (525)
.++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=64.16 Aligned_cols=96 Identities=14% Similarity=-0.075 Sum_probs=63.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHH
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDS---DYVYVMLCN 480 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 480 (525)
|......+.+.|++++|+..|+.+ ...|+ +..+..++..|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333445567777777777765 22233 2456667777777788888888888888777654 455666677
Q ss_pred HHhhccChhHHHHHHHHHHHcCCc
Q 048766 481 LYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
++...|++++|..+|+++.+..+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777778888888888777766543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.6e-05 Score=52.90 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=50.0
Q ss_pred hccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 417 GQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
...|++++|++.|+++ .. +.+...+..++..|.+.|++++|.+.++++....|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4578899999999887 33 3356777788899999999999999999999999977776665543
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.031 Score=55.76 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=84.3
Q ss_pred ccCCHHHHHHHHhcCCC--CCcccHHHHHHHH--HhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHH
Q 048766 50 KINSLADAHKMFVEIPQ--PSVVSWNSLISGY--VQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMA 125 (525)
Q Consensus 50 ~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 125 (525)
..+++.+|+...+++.+ ||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.+.+..++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45677888877777665 554 355556554 5789999999888888765544 77888888889999999999999
Q ss_pred HHHHHHHcccCCCcchhhHHHHHHHhcCCHHH----HHHHHhhccC
Q 048766 126 IHSKIVKYSLERGVVIANCLIDMYGKCGSVED----AIGVFGEMID 167 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~ 167 (525)
+++...+.. |+......+..+|.+.+++.+ |++++....+
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999888763 667777778888888877655 4555554444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.9e-05 Score=55.24 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=42.6
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc-hhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY-GVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
++.|+.+++++.+.....++...+..++.+|.+.|++++|..++++.+..+. ......++.++.+.|++++|++++++
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 6666666666665421111334444466666666666666666655422222 23334445666667777777766665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.016 Score=52.00 Aligned_cols=287 Identities=14% Similarity=0.106 Sum_probs=175.1
Q ss_pred hHHHHHHHHH--hCCChHHHHHHHhcC---CCCCcchHHHHHH--HHHhcCChHHHHHHHhcCCC-CCccc--HHHHHHH
Q 048766 172 SWNSVIAASA--RNGNLELAFGFLHRL---PNPDTISYNEVIN--GIAQFGDIEDAIMILSSMPS-PNSSS--WNSILTG 241 (525)
Q Consensus 172 ~~~~l~~~~~--~~~~~~~a~~~~~~~---~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~ 241 (525)
.|..|-.++. ..|+-..|.++-.+. ...|......++. +-.-.|++++|.+-|+.|.. |.... ...|.-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 4555555544 356677777666555 3344444444443 33457999999999999874 33322 2223333
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC-CCchHHH--HHHHHHHHH---cC
Q 048766 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-LDASIVV--ASALLDMYS---KC 315 (525)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~ 315 (525)
-.+.|..+.|..+-+..-..- +--.-.....+...+..|+++.|+++.+.-.... +.++..- -..|+.+-. -.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 346788888888777765542 2234567788888999999999999988776543 2333211 111221111 12
Q ss_pred CCHHHHHHHHHhcc--CCCHh-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHH
Q 048766 316 GQVEIADSMFRSLC--RKNLV-TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 316 g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
.+...|...-.+.. .||.+ .--.-..++.+.|+..++-.+++.+.+. .|-+... .+....+.|+ .+..-
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia--~lY~~ar~gd---ta~dR 314 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIA--LLYVRARSGD---TALDR 314 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHH--HHHHHhcCCC---cHHHH
Confidence 23445554444443 44443 2333457788999999999999999884 4444332 2223344443 55555
Q ss_pred HHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHH-hcCCChHHHHHHHHHHHhh
Q 048766 393 FESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSAS-GACSDLDVARISAAEVIKL 467 (525)
Q Consensus 393 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~ 467 (525)
+++..+...++|+ ......+.++-...|++..|..--+.. ...|....|..+...- ...||-+++...+.++++.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5555444355664 566667777888889988887776665 5567777777666654 4569999999988888874
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00031 Score=53.01 Aligned_cols=89 Identities=16% Similarity=-0.018 Sum_probs=59.6
Q ss_pred HHHHHHhccCChHHHHHHHHHh---CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC---ChhHHHHHHHHH
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL---GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGD---SDYVYVMLCNLY 482 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 482 (525)
.+..++-..|+.++|+.++++. +.... ...+..+..++...|++++|+.++++.....|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 4455666777777777777765 22222 345566777777778888888888777777676 555566667777
Q ss_pred hhccChhHHHHHHHHHH
Q 048766 483 TSHGNWDVASVMRNFMR 499 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~ 499 (525)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77788887777765443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.2e-05 Score=45.18 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHH
Q 048766 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 460 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 493 (525)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00068 Score=60.87 Aligned_cols=152 Identities=15% Similarity=0.070 Sum_probs=81.7
Q ss_pred HHHcCCCHHHHHHHHHhccCCCHh-HHHHHH--HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHH---HHH--------
Q 048766 311 MYSKCGQVEIADSMFRSLCRKNLV-TWNAMI--TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFL---NVL-------- 376 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~-------- 376 (525)
++...|+.+.|.+.--.+.+.|.. .+...+ .++...++.+.+..-|++... ..|+...-. ...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHh
Confidence 344455555555554444433322 122222 222334555666666666555 444432211 111
Q ss_pred --HHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHH
Q 048766 377 --AACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSA 447 (525)
Q Consensus 377 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~ 447 (525)
.-..+.|. +..|.+.|.+.+ ++.|+ ...|.....+..+.|+..+|+.-.++. .+.+. ...+..-..+
T Consensus 255 ~gN~~fk~G~-y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 255 RGNDAFKNGN-YRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred hhhhHhhccc-hhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 12345666 777777777776 44553 445666666667778888887777765 33332 2233333444
Q ss_pred HhcCCChHHHHHHHHHHHhhcC
Q 048766 448 SGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p 469 (525)
+...+++++|.+-++++.+...
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 5556778888888887777653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00031 Score=68.19 Aligned_cols=137 Identities=15% Similarity=0.098 Sum_probs=98.4
Q ss_pred CCCCHhHHHHHHHHHcCCCC----CcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhcc--------CChHHHHHHHHH
Q 048766 365 LQPDSVTFLNVLAACSHTDI----PFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQK--------GEVWRAQRMIRE 431 (525)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 431 (525)
.+.+...|...+.+...... +...|..+|+++.+ ..|+ ...+..+..+|... ++..++.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45577888888877543211 26689999999984 4776 34444444443221 123444454444
Q ss_pred h----CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 432 L----GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 432 ~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
. ....++..+..+.......|++++|...++++++++| +..+|..++.++...|+.++|...+++.....+..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3 1333456777777667778999999999999999999 68899999999999999999999999998877644
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00055 Score=56.52 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=79.9
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC--HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD--SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHC 409 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 409 (525)
...+..+...+...|++++|+..|++..+.. ..|. ...+..+...+...|+ +++|...+++..+. .| +...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGE-HDKALEYYHQALEL---NPKQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CcccHHHH
Confidence 3456667777777788888888888777633 2221 3456666777777777 78888777777642 33 34555
Q ss_pred HHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 410 CSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
..++.+|...|+...+..-++.. .+.+++|.++++++++.+|++ +..++..+...|
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 56666666666655544333221 123678888999998888865 444444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.3e-05 Score=50.81 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCC-ChHHHHHHHHHHHhhcC
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACS-DLDVARISAAEVIKLEG 469 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 469 (525)
++..|..++..+...|++++|+..|++. ...| +...|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888999999999999999999986 3334 5778889999999999 79999999999999988
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.7e-05 Score=45.68 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
..+..+..+|...|++++|+++|+++++..|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999988875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0028 Score=57.12 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSK 261 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 261 (525)
+..+...+.+.|++++|.++|++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445566666777777777777766543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00023 Score=51.96 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=45.2
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCCh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDL 454 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 454 (525)
..+...|+ +++|...++.+.+. .+.+...+..++..+...|++++|.+.++.. ...| +...+..++..+...|++
T Consensus 8 ~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 8 NLYYKLGD-YDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHhc-HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33344444 55555555554421 1112234444555555555555555555553 2122 223455555566666666
Q ss_pred HHHHHHHHHHHhhcC
Q 048766 455 DVARISAAEVIKLEG 469 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p 469 (525)
+.|...+.++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666666555
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0011 Score=52.10 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=40.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh-HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHH
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSV-TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRL 415 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 415 (525)
.+...+...|++++|.++|+-+.. ..|... -|..|..++...|+ +++|+..|...... .| ++..+..++.+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L---~~ddp~~~~~ag~c 112 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQI---KIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc---CCCCchHHHHHHHH
Confidence 334444455555555555555555 444332 22333333333444 55555555555422 22 34444445555
Q ss_pred HhccCChHHHHHHHHH
Q 048766 416 MGQKGEVWRAQRMIRE 431 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~ 431 (525)
+...|+.+.|.+.|+.
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 5555555555555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0005 Score=64.02 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=53.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERS--EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
....++..+....+.+.+..++-+.... ....-..|.+++++.|.+.|..+.+..++..=...|+-||..+++.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444455544445555555555555543 12222344556666666666666666666666666666666666666666
Q ss_pred HHhcCCHHHHHHHHhhc
Q 048766 149 YGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~ 165 (525)
+.+.|++..|.+++..|
T Consensus 148 fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEM 164 (429)
T ss_pred HhhcccHHHHHHHHHHH
Confidence 66666666666665555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.5e-05 Score=41.71 Aligned_cols=31 Identities=32% Similarity=0.726 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDV 263 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 263 (525)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=52.75 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=91.2
Q ss_pred CCCCChhHHHHHHHHHhccCChHHHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC--ChhHH
Q 048766 401 GIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD--SDYVY 475 (525)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~ 475 (525)
.+.|++.....|..++.+.|+..+|...|++. .+..|......+..+....+++..|...++++.+..|. +|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 56788888889999999999999999999987 45567888888999999999999999999999998874 56778
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..+++.+...|++++|...|+...+--+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 88999999999999999999888765443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.2e-05 Score=41.50 Aligned_cols=29 Identities=41% Similarity=0.810 Sum_probs=19.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSE 99 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 99 (525)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0018 Score=58.28 Aligned_cols=149 Identities=15% Similarity=0.247 Sum_probs=66.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhc-CChhHHHHHHHHHhhCCC--CCC--CHhHHHHHHHHHcCC
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARN-GDLTKVIELFEQLKTVRD--LQP--DSVTFLNVLAACSHT 382 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~ 382 (525)
.+..|...|++..|-+.+. .+...|... |+++.|++.|++..+.-. -.+ -..++..+...+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 3344555555555544333 234455555 666666666666544210 011 123344555556666
Q ss_pred CCCcchHHHHHHHhhhhhCCCC-----Ch-hHHHHHHHHHhccCChHHHHHHHHHh-CCCC------chhHHHHHHHHHh
Q 048766 383 DIPFDKVSEYFESMTKDYGIKP-----TV-EHCCSMIRLMGQKGEVWRAQRMIREL-GFGS------YGVVWRALLSASG 449 (525)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~------~~~~~~~l~~~~~ 449 (525)
|+ +++|.++|+++... .... +. ..+...+-++...||+..|.+.+++. ...| .......++.++-
T Consensus 169 ~~-y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 169 GR-YEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp T--HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 66 66666666665542 1111 11 11222333444566666666666664 2222 1234445555553
Q ss_pred c--CCChHHHHHHHHHHHhhcC
Q 048766 450 A--CSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 450 ~--~~~~~~A~~~~~~~~~~~p 469 (525)
. ...++.++.-|+.+.+++|
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 3 2345555555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.06 Score=52.26 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=30.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHh
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESM 396 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 396 (525)
|..--...|..+.|++.--.+..-.++-|-...|..+.-+.+.... +....+.|-++
T Consensus 1027 lAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ra-FGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1027 LAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRA-FGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhh-hhhhHHHHHHH
Confidence 3333445677777776554444333356666667666555444444 44444444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00042 Score=62.08 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=101.2
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc-cCChHHHHHHHHHh--CCCCchhHHHHHHH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ-KGEVWRAQRMIREL--GFGSYGVVWRALLS 446 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 446 (525)
.+|..++....+.+. .+.|+.+|.++.+. -..+...|...+.+-.. .++.+.|.++|+.. ....+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 467788888888887 99999999999853 22345556666666344 56777799999986 44567788888999
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.+...|+.+.|..+|++++..-|.+. ..|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999776444 5799999999999999999999999987643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00026 Score=48.74 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=54.7
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
...|.+.+++++|.++++.+ ...| ++..|...+..+...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35788899999999999987 4444 466777888899999999999999999999999877765543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=65.45 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG----VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
+...+..++.+|.+.|++++|+..|++. ...|+. .+|..+..+|...|++++|++.++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4556677777777777777777777764 445553 24667777777777777777777777776321 111111
Q ss_pred H--HHhhccChhHHHHHHHHHHHcCCc
Q 048766 480 N--LYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 480 ~--~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
. .+..-.+.++..++++.+.+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 0 111223344566666666666553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00053 Score=61.45 Aligned_cols=131 Identities=10% Similarity=-0.004 Sum_probs=94.3
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHh---hhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-------C-CCCc
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESM---TKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-------G-FGSY 437 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~ 437 (525)
..|..+...|.-.|+ ++.|+...+.- .+.+|-.. ....+..+..++.-.|+++.|.+.++.. + ....
T Consensus 196 Ra~GnLGNTyYlLGd-f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGD-FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred chhcccCceeeeecc-HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 456666667777788 88888765532 22223222 2456778888888999999999988763 2 2233
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
..+...|..+|.-..++++|+.+..+-+++. -....++..|+.+|...|..++|+.+.+.-.+.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5567788888888889999999888766543 234677889999999999999999887766553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.05 Score=50.11 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=90.9
Q ss_pred HhccCchhhhhHHHHHHHHhCCCchH------HHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccHHHHHHHH--Hhc
Q 048766 13 SSDLGWDTYCQQLHCYILKSGFLSNV------FVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGY--VQS 82 (525)
Q Consensus 13 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~--~~~ 82 (525)
+-+.+++.+|..+|.++.+.. ..++ ..-+.++++|-. .+.+.....+....+ | ...|-.+..++ .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 457889999999999987664 3332 234577777764 556655555555544 3 33455555543 467
Q ss_pred CChHHHHHHHHHHHhc--CCCC------------CHhhHHHHHHHHcccCChHHHHHHHHHHHHcccC----CCcchhhH
Q 048766 83 GKYRKALNLFVELERS--EIYA------------DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLE----RGVVIANC 144 (525)
Q Consensus 83 ~~~~~A~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 144 (525)
+++.+|++.+....+. +..| |-..=+..+.++...|++.+++.+++.+...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999999988887664 3222 2223456677788999999999999888765443 67788888
Q ss_pred HHHHHHh
Q 048766 145 LIDMYGK 151 (525)
Q Consensus 145 l~~~~~~ 151 (525)
++-.+++
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 6666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.011 Score=51.73 Aligned_cols=173 Identities=10% Similarity=0.039 Sum_probs=106.1
Q ss_pred HHHHHHcCCCHHHHHHHHHhccC--CC-HhH---HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHH
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCR--KN-LVT---WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAAC 379 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~ 379 (525)
....+.+.|++++|.+.|+.+.. |+ ... .-.++.++.+.++++.|...+++..+. .|+. ..+...+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~---~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CcCCCchHHHHHHHHH
Confidence 34445667888888888888862 22 222 234567778889999999999998884 4432 2333333332
Q ss_pred cC--CCC--------------Cc---chHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhH
Q 048766 380 SH--TDI--------------PF---DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVV 440 (525)
Q Consensus 380 ~~--~~~--------------~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 440 (525)
+. .+. +. ..|.+.|+.+.+. -|+ ..-..+|...+..+...- ...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~l-a~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDRL-AKY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHHH-HHH
Confidence 21 110 01 2344455555443 233 222334444333331000 111
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh---hHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
-..+...|.+.|.+..|+.-++.+++.-|+.+ .++..+..+|...|..++|......+..
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 12456678899999999999999999887654 5577888999999999999998876643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00069 Score=49.13 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHcccC--------ChHHHHHHHHHHHHcccCCCcchhh
Q 048766 73 NSLISGYVQSGKYRKALNLFVELERSEI-YADAYSFTSALAACGQLG--------SLQLGMAIHSKIVKYSLERGVVIAN 143 (525)
Q Consensus 73 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (525)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.++++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566677999999999999999999 899999999998876542 2445778899999999999999999
Q ss_pred HHHHHHHh
Q 048766 144 CLIDMYGK 151 (525)
Q Consensus 144 ~l~~~~~~ 151 (525)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0017 Score=57.00 Aligned_cols=101 Identities=15% Similarity=0.014 Sum_probs=77.2
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVV 440 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~ 440 (525)
..|...+....+.|+ +++|...|+.+.+. .|+ +..+..++..|...|++++|...|+.+ ...|+ +..
T Consensus 144 ~~Y~~A~~l~~~~~~-y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSR-QDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 445555544456677 99999999999865 343 357778899999999999999999987 22222 456
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
+..++..+...|++++|...|+++++..|++..+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 6667778888999999999999999999976543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=49.57 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc----CCC---hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLE----GDS---DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
..++..+...|...|++++|+..+++++++. +++ ..++..++.++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3467778888889999999999999988753 222 45688999999999999999999988764
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.014 Score=53.44 Aligned_cols=160 Identities=18% Similarity=0.117 Sum_probs=91.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccCC-------CHhHHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCRK-------NLVTWNAMITGYAR---NGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
.++-.|-...+++...++.+.+... ....-...+-++.+ .|+.++|++++..+.... ..+++.+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Confidence 4445566777777777777776532 11222233444455 677788888877744433 456666666555
Q ss_pred HHHcC---------CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH----HHHHHH---HHh-------C
Q 048766 377 AACSH---------TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW----RAQRMI---REL-------G 433 (525)
Q Consensus 377 ~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~ 433 (525)
..|-. ... .++|+..|.+.- .+.|+...--.++-.+...|... +..++- ..+ .
T Consensus 225 RIyKD~~~~s~~~d~~~-ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRES-LDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHcCccchHH-HHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 54321 222 566777776554 34454433333333333333211 222222 111 2
Q ss_pred CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
...+...+.+++.++.-.||+++|.+.++++.++.|+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 23445556678888899999999999999999998743
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.002 Score=53.02 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--CHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQP--DSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
.|..++..+...|++++|+..|++..... ..| ...++..+...+...|+ +++|++.++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGE-HTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 34444444445555555555555554421 111 11234444444444444 555555554444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0015 Score=61.02 Aligned_cols=119 Identities=10% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC-C-----CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhH
Q 048766 34 FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-P-----SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107 (525)
Q Consensus 34 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 107 (525)
.+.+......++..+....+++.+..++-+... | -..+..++++.|...|..+.++++++.=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 355666667777777777788888877766654 1 2234568899999999999999999888888999999999
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhc
Q 048766 108 TSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152 (525)
Q Consensus 108 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (525)
+.||..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888777666666665555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.032 Score=53.51 Aligned_cols=53 Identities=15% Similarity=0.032 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
..+...+...+.+... +..|-++|.+|-. ...++++....+++.+|..+-++.
T Consensus 747 re~l~~~a~ylk~l~~-~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDS-PGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hhHHHHHHHHHhhccc-cchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhC
Confidence 3444444444444555 6777777776642 245566777777777777777766
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.018 Score=48.95 Aligned_cols=176 Identities=16% Similarity=0.113 Sum_probs=89.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhccC--C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh--HHHHHHHHH
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCR--K----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV--TFLNVLAAC 379 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~ 379 (525)
....+...|++++|.+.|+.+.. | -....-.++.++.+.|+++.|...+++..+ .-|+.. .+...+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~---~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK---LYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---H-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCcchhhHHHHHHH
Confidence 34455667777777777777752 1 122445556677777777777777777766 334321 122222222
Q ss_pred cCCCCCcchHHHHHHHhhhhh-CCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDY-GIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
+... .....+ ....+. ...--...+..++..|=...-..+|...+..+... -...-..++..|.+.|.+..|.
T Consensus 88 ~~~~----~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 88 SYYK----QIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-LAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHH----HHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHH----hCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccHHHHH
Confidence 1111 000000 000000 00000122333444444444444554444443100 0111123567788999999999
Q ss_pred HHHHHHHhhcCCChh---HHHHHHHHHhhccChhHHH
Q 048766 459 ISAAEVIKLEGDSDY---VYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 492 (525)
.-++.+++..|+.+. ++..++.+|.+.|..+.|.
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999997654 4667888899999888554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.007 Score=45.76 Aligned_cols=102 Identities=11% Similarity=0.050 Sum_probs=60.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHhccccchHHHHHHHHHHHHhCCC--chHHHHHHHHHHH
Q 048766 237 SILTGYVNRNRVPEALHLFGEMQSKDVPMD--EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD--ASIVVASALLDMY 312 (525)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 312 (525)
.+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888888888888888776544 234555666677777777777777777654311 1222222333455
Q ss_pred HcCCCHHHHHHHHHhccCCCHhHHHH
Q 048766 313 SKCGQVEIADSMFRSLCRKNLVTWNA 338 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~~~~~~~~~~ 338 (525)
...|+.++|.+.+-...-++...|..
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~r 111 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRR 111 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777766655443333333333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0025 Score=46.28 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHhcccc--------chHHHHHHHHHHHHhCCCchHHHHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDV-PMDEYTFSTMLSGIAGLS--------ALTWGMLIHSCVIKQGLDASIVVAS 306 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 306 (525)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++...+.+|+.+...++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677999999999999999999 899999999998877543 3556677888898889999999999
Q ss_pred HHHHHHHc
Q 048766 307 ALLDMYSK 314 (525)
Q Consensus 307 ~l~~~~~~ 314 (525)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.032 Score=47.37 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC-----CCchHHHHHHHHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG-----LDASIVVASALLD 310 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 310 (525)
+.++.++.-.|.+.-.++.+++.++..-+-++.....+.+...+.|+.+.|..+++...+.. ......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44555566666777777777777776555566666667777777777777777777665432 2223333333344
Q ss_pred HHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 311 MYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
.|.-.+++..|...+.+++. .|+..-|.-.-...-.|+..+|++.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666677777766652 3344444444444456677777777777776
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.093 Score=47.74 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048766 177 IAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFG 256 (525)
Q Consensus 177 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (525)
+.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-..+... +.++..|..++..|.+.|+..+|..++.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444444444444444444444445555555555444443332 2334445555555555555555544444
Q ss_pred H
Q 048766 257 E 257 (525)
Q Consensus 257 ~ 257 (525)
.
T Consensus 262 k 262 (319)
T PF04840_consen 262 K 262 (319)
T ss_pred h
Confidence 3
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.014 Score=49.46 Aligned_cols=134 Identities=9% Similarity=0.021 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh----CCCCChhHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY----GIKPTVEHCC 410 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 410 (525)
..+.++..+.-.|.+.-.+..+.+.++.. .+-++.....+.+.-.+.|+ .+.|..+|++..+.. ++........
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD-~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGD-IKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 44555566666777777777777777743 23355666667777777777 777777777665432 2222233333
Q ss_pred HHHHHHhccCChHHHHHHHHHhC--CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 411 SMIRLMGQKGEVWRAQRMIRELG--FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.....|.-++++.+|...+.+.. .+.++...+.-.-...-.|+...|++..+.++...|.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33445556667777777776652 1222333333333333456777777777777777763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0071 Score=46.63 Aligned_cols=95 Identities=21% Similarity=0.082 Sum_probs=67.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh----CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH---HHHHHH
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL----GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV---YVMLCN 480 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~ 480 (525)
+..-+....+.|++++|++.|+.+ +..+- ...-..++.++.+.|++++|...+++.+++.|.++.+ +...+.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 333455556788899998888887 33332 3455668888999999999999999999999877654 444455
Q ss_pred HHhhccC---------------hhHHHHHHHHHHHcCC
Q 048766 481 LYTSHGN---------------WDVASVMRNFMRERGL 503 (525)
Q Consensus 481 ~~~~~g~---------------~~~A~~~~~~~~~~~~ 503 (525)
++..+.. ..+|..-|+++++.-+
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 5555544 6677777777776543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0048 Score=55.81 Aligned_cols=138 Identities=12% Similarity=-0.039 Sum_probs=101.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (525)
...|.+.|++..|..-|++... .-+.. ..-+ .++..... ..-..++..+.-+|.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~---~l~~~-----------~~~~-~ee~~~~~---------~~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVS---FLEYR-----------RSFD-EEEQKKAE---------ALKLACHLNLAACYLKL 270 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHH---Hhhcc-----------ccCC-HHHHHHHH---------HHHHHHhhHHHHHHHhh
Confidence 5677788888888888887765 21111 1111 11111111 11234567788899999
Q ss_pred CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHH-HHHHH
Q 048766 420 GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA-SVMRN 496 (525)
Q Consensus 420 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~ 496 (525)
+++.+|+...++. -.+++...+..-+.++...|+++.|+..|+++++++|+|..+-..|+.+-.+..++.+. .++|.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 33566778888899999999999999999999999999999999999888877666555 78899
Q ss_pred HHHHc
Q 048766 497 FMRER 501 (525)
Q Consensus 497 ~~~~~ 501 (525)
.|...
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 88764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=59.40 Aligned_cols=92 Identities=13% Similarity=-0.040 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHH-h------CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc------CCCh
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIRE-L------GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLE------GDSD 472 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~-~------~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~ 472 (525)
..|..|...|.-.|++++|+..-+. + +.. .....+..+..++.-.|+++.|.+.|+..+.+. ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566777778888999999887653 1 221 224567778888888999999999999877543 1234
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
.....|+..|.-..+++.|+.++.+=
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 55778999999999999999988754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=53.24 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH-----cCCccCCcc
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE-----RGLRKEAGC 509 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 509 (525)
....++..+...|++++|+..+++++..+|.+...+..++.+|...|+..+|.++|+++.+ .|+.|.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455677788899999999999999999999999999999999999999999999998853 577776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.19 Score=48.21 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=120.9
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
++...|...+.--...|+.+.+.-+|+.+.-| -...|-..+.-....|+.+-|..++.+..+-. .|+......+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~--~k~~~~i~L~~ 372 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH--VKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--CCCCcHHHHHH
Confidence 45667778888888899999999999888643 33456666666666699998888888776643 33333332333
Q ss_pred HHH-cCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHH---HHHHHh-CCCCchhHH----HHHHH
Q 048766 377 AAC-SHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQ---RMIREL-GFGSYGVVW----RALLS 446 (525)
Q Consensus 377 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~~~~~~~----~~l~~ 446 (525)
..+ -..|+ ++.|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++... ....+.... ....+
T Consensus 373 a~f~e~~~n-~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFEESNGN-FDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHhhcc-HHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 333 34456 99999999999874 3 54 333344455667888888887 444333 222222222 22222
Q ss_pred -HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 447 -ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 447 -~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
.+...++.+.|..++.++....|++...|..+.......+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3345789999999999999999988888988888876665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.16 Score=46.27 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=75.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCc
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPF 386 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 386 (525)
.-+.-+...|+...|.++-.+..=|+-..|...+.+++..++|++-.++-.. . . ++..|..++.+|...|. .
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-K--sPIGyepFv~~~~~~~~-~ 253 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K-K--SPIGYEPFVEACLKYGN-K 253 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-C--CCCChHHHHHHHHHCCC-H
Confidence 3345556678888888888888778888888888888888888876665432 1 2 23667788888888887 7
Q ss_pred chHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 387 DKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
.+|..++.++. +..-+..|.+.|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888776532 13446777888888888777555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.01 Score=52.62 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC---HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC--C--Chh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD---SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK--P--TVE 407 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~ 407 (525)
.|..+.+++.+..++.+++.+-..-....+..|. ......+..+....+. ++++++.|+...+-..-. | ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~-fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV-FQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH-HHHHHHHHHHHHHHhhccCCceeeee
Confidence 4555666666666666776666655544334442 1223345556666666 888888888766431111 1 245
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc------C
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-----GVVWRALLSASGACSDLDVARISAAEVIKLE------G 469 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p 469 (525)
++..|...|.+..|+++|.-+..+. +...- ..+...+..++...|....|.+.-+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6778888888888888887776654 21111 1234455667788899888988888887753 2
Q ss_pred CChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
-.......++++|...|+.+.|..-|+..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23444667889999999998888777754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0048 Score=50.92 Aligned_cols=88 Identities=7% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCcccHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccC----------------ChHHHHH
Q 048766 67 PSVVSWNSLISGYVQ-----SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLG----------------SLQLGMA 125 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~ 125 (525)
.+-.+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.||+.+-+.. +-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455566666666543 3566666677778888888888888888888765421 3456788
Q ss_pred HHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 126 IHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888866553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00099 Score=46.49 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-------C-CCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-------G-FGSY-GVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
..+++.++..|...|++++|+..+++. + ..|+ ..++..++..+...|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356778888888999999988888875 2 1122 456778888999999999999999998875
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0083 Score=55.76 Aligned_cols=159 Identities=11% Similarity=0.138 Sum_probs=97.4
Q ss_pred hHH--HHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCC---CC-----CcchHHHHHHHhh
Q 048766 334 VTW--NAMITGYAR-----NGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHT---DI-----PFDKVSEYFESMT 397 (525)
Q Consensus 334 ~~~--~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---~~-----~~~~a~~~~~~~~ 397 (525)
..| ..++.+... ....+.|+.+|.+........|+ ...|..+...+... |- +..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 555555443 12356788888888832227776 45555555543221 11 1334555555555
Q ss_pred hhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 398 KDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 398 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
.+.| |+.....++.++.-.|+++.|...|++. ...|+ ...|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3344 5667777777777778888888888886 44555 5566666777777888888888888888888854433
Q ss_pred --HHHHHHHHhhccChhHHHHHHH
Q 048766 475 --YVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 475 --~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
....++.|... ..++|+++|-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 22333345544 4666776664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0044 Score=53.16 Aligned_cols=89 Identities=17% Similarity=-0.000 Sum_probs=58.4
Q ss_pred HhccCChHHHHHHHHHh-CCCC----chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC---ChhHHHHHHHHHhhccC
Q 048766 416 MGQKGEVWRAQRMIREL-GFGS----YGVVWRALLSASGACSDLDVARISAAEVIKLEGD---SDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 487 (525)
+.+.|++.+|...|... ..-| .+..+..|+.++...|++++|...|..+.+-.|+ -|+++..|+.+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34556677777777665 1111 1334445777777777777777777777776544 35667777777777777
Q ss_pred hhHHHHHHHHHHHcCCc
Q 048766 488 WDVASVMRNFMRERGLR 504 (525)
Q Consensus 488 ~~~A~~~~~~~~~~~~~ 504 (525)
.++|...|+++.+.-+.
T Consensus 231 ~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 231 TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 77777777777766543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.061 Score=47.02 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-h---HHHHHHHHcccCChHHHHHHHHHHHHc
Q 048766 75 LISGYVQSGKYRKALNLFVELERSEIYADAY-S---FTSALAACGQLGSLQLGMAIHSKIVKY 133 (525)
Q Consensus 75 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~ 133 (525)
....+...|++++|.+.|+.+... -|+.. . .-.+..++.+.+++++|...+++.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334445566777777777776653 23221 1 123345556666666666666666665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.12 Score=49.75 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHhccCchhhhhHH--HHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhc
Q 048766 7 FHLLRASSDLGWDTYCQQL--HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVE 63 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~--~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 63 (525)
+..=++|.+.+++.-..-+ ++.+.+.|-.|+.. .+...++-.|++.+|.++|.+
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 3344455555544432222 33455666556653 345566677888888777764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.021 Score=48.48 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHhhcCCChhH-----------------HHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 452 SDLDVARISAAEVIKLEGDSDYV-----------------YVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+...+|...|+.+++..|+++.+ -...+..|.+.|.+..|..-++.+.+.-+
T Consensus 104 ~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 104 TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 34456666777777766765422 23468889999999999999999887644
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0043 Score=56.13 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=75.3
Q ss_pred HHHHhccCChHHHHHHHHHh--------CCCC---------chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 413 IRLMGQKGEVWRAQRMIREL--------GFGS---------YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~--------~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
+..|.+.|++..|..-|+++ +.++ -..++..+...+.+.+++..|++...++++++|+|.-++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 44566777777777776663 1111 134566778888999999999999999999999999999
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+.-+.++...|+++.|+..|+++++..+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999987654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0091 Score=49.35 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=71.8
Q ss_pred CCCcccHHHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc----------------cchHHHH
Q 048766 229 SPNSSSWNSILTGYVN-----RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL----------------SALTWGM 287 (525)
Q Consensus 229 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 287 (525)
..+..+|..++..|.+ .|+.+=....++.|.+-|+.-|..+|+.|+..+=+. .+-+-++
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566667777777664 577888888899999999999999999999887542 2456788
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
.++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 899999999999999999999998876554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.46 Score=46.95 Aligned_cols=331 Identities=11% Similarity=0.058 Sum_probs=171.9
Q ss_pred cccCCCcchhh-----HHHHHHHhcCCHHHHHHHHhhccCCC---hhhHHHHHHHHHhCCC---hHHHHHHHhcCCC--C
Q 048766 133 YSLERGVVIAN-----CLIDMYGKCGSVEDAIGVFGEMIDKD---IISWNSVIAASARNGN---LELAFGFLHRLPN--P 199 (525)
Q Consensus 133 ~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~ 199 (525)
.|++.+..-|. .+++-+...+.+..|+++-..+-.|. ...|.....-+.+..+ .+.+..+-+++.. -
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 34554444443 34666667777788887777775553 3445555555554422 2223333344433 3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCC--------CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 048766 200 DTISYNEVINGIAQFGDIEDAIMILSSMPS--------PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFS 271 (525)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 271 (525)
+..+|..+..-.-..|+.+-|..+++.-+. -+..-+..-+.-..+.|+.+....++-++... .+...+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 445666666666777888888777765432 11122333344445555555555555544432 1111111
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHH-HHhcc-----CCCHhHHHHHHHHHHh
Q 048766 272 TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSM-FRSLC-----RKNLVTWNAMITGYAR 345 (525)
Q Consensus 272 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~-----~~~~~~~~~l~~~~~~ 345 (525)
..+ .+...|..+|....+..-. ..+-+.|-...+...+-.+ ++... .+-..........+.+
T Consensus 583 ~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 583 MTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 111 1122233333333221100 0111122222222221111 11100 1111122222333333
Q ss_pred cCC----------hhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 048766 346 NGD----------LTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415 (525)
Q Consensus 346 ~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (525)
... ..+-+.+.+.+..+-+..-...+.+--+.-+...|. ..+|.++-++.+ -||-..|..-+.+
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~-~k~a~ql~~~Fk-----ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQ-NKRAEQLKSDFK-----IPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccc-hHHHHHHHHhcC-----CcchhhHHHHHHH
Confidence 222 122222333333321122334455666666777787 788888877664 5788888888889
Q ss_pred HhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 416 MGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
+...+++++-+++-+... .+.-|..+..+|.+.|+.++|..++-+.-. .+ ....+|.+.|++.+|.++-
T Consensus 725 La~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHHH
Confidence 999999988877777643 366677788899999999999888765421 11 5678888888888887654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.036 Score=48.39 Aligned_cols=100 Identities=10% Similarity=-0.046 Sum_probs=63.9
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc---CChHHHHHHHHHh-CCC-CchhHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK---GEVWRAQRMIREL-GFG-SYGVVWR 442 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~-~~~~~~~ 442 (525)
|...|..|..+|...|+ .+.|..-|....+. -.+++..+..+..++... .+..++..+|+++ ..+ .+..+..
T Consensus 155 d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGR-ASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcc-hhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 56667777777777777 77777777776642 123455555555554432 2345677777776 333 3455666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.|...+...|++.+|...++.+++..|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 6677777888888888888888887763
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.046 Score=52.97 Aligned_cols=160 Identities=15% Similarity=0.066 Sum_probs=99.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-----hHHHHHHHHHcCC---CCCcchHHHHHHHhhhhhCCCCChhHHH
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDS-----VTFLNVLAACSHT---DIPFDKVSEYFESMTKDYGIKPTVEHCC 410 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 410 (525)
++....=.||-+.+++.+.+..+.+++.-.. ..|...+..+... +.+.+.|.++++.+.+. -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444566667777666665543222211 2233333333332 33377888888888754 45544443
Q ss_pred -HHHHHHhccCChHHHHHHHHHhC-CC-----CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH-HHHHH
Q 048766 411 -SMIRLMGQKGEVWRAQRMIRELG-FG-----SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM-LCNLY 482 (525)
Q Consensus 411 -~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~ 482 (525)
.-++.+...|+.++|++.|++.- .. -....+..++..+....++++|.+.+.++.+....+...|.. .+-++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34556677888888888888651 11 123445567777888899999999999999887765555553 44556
Q ss_pred hhccCh-------hHHHHHHHHHHHc
Q 048766 483 TSHGNW-------DVASVMRNFMRER 501 (525)
Q Consensus 483 ~~~g~~-------~~A~~~~~~~~~~ 501 (525)
...|+. ++|.+++.+....
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 667877 8888888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.064 Score=50.10 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=72.7
Q ss_pred cchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhc---------cCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCC
Q 048766 386 FDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQ---------KGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSD 453 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~ 453 (525)
.+.|..+|.+......++|+ ...|..+...+.. ..+..+|.+..++. .. ..|+.....++.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 56666677776633355664 3333333333221 22334455555544 22 3345555556666666666
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
++.|...|++++.++|+.+.++...++.+.-.|+.++|.+.+++..+..+..
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 7777777777777777777777777777777777777777777766655543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.012 Score=54.66 Aligned_cols=66 Identities=9% Similarity=-0.144 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH---HHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV---YVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 436 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+...+..+..+|.+.|++++|+..|+++++++|++..+ |.+++.+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777777777777777777777777777766643 777777777777777777777777664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=50.48 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC-CChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc-hhHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK-PTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY-GVVWRAL 444 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l 444 (525)
.|+..+.. .+.|+ +..|...|....+.+.-. -.+..+..|++++...|++++|..+|..+ +..|. +..+..+
T Consensus 144 ~Y~~A~~~-~ksgd-y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDL-YKSGD-YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHcCC-HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 45555544 45566 899999999888753111 13556777899999999999999999876 33343 4677778
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
+....+.|+.++|...|+++.+-.|+.+.+-.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888999999999999999999997766544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.67 Score=46.90 Aligned_cols=115 Identities=10% Similarity=-0.042 Sum_probs=60.5
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
..+.+.|..++..........+.. .....+.......+. .+++...++..... ..+......-++.-.+.++++
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~-~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDV-TDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccC-CHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHH
Confidence 445677777777664433233322 223333333344332 35666666554322 223344444455555777777
Q ss_pred HHHHHHHHhC--CCCchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 424 RAQRMIRELG--FGSYGVVWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 424 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
.+...+..|+ ......-..-++.++...|+.++|...|+++
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777762 1112233334556655677777777777776
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.27 Score=42.19 Aligned_cols=59 Identities=17% Similarity=0.018 Sum_probs=46.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChh---HHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDY---VYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+..-|.+.|.+..|..-++++++.-|+.+. ++..+..+|.+.|-.++|...-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3566788999999999999999998776554 4556778899999999998876555443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.21 Score=41.36 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=101.1
Q ss_pred cCCCHHHHHHHHHhcc--CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchH
Q 048766 314 KCGQVEIADSMFRSLC--RK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a 389 (525)
..|-+..|+-=|.+.. .| -+..||-+.--+...|+++.|.+.|+...+ +.|. ..+...-.-++...|+ +.-|
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~YY~gR-~~LA 152 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGR-YKLA 152 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceeeeecCc-hHhh
Confidence 3344455554444433 34 356788888888899999999999999988 6674 2333222334555677 8888
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
.+-+...-..-.-+|-...|..+. ...-++.+|..-+.+--...+..-|...+-.+. .|+.. ...+++++.+-..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY-LGKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhcc
Confidence 876666554312222222222222 234467777665544211223333333222221 12221 1233344433222
Q ss_pred CC-------hhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 470 DS-------DYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 470 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
++ .++|+.|+.-+...|+.++|..+|+.....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22 467889999999999999999999866543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.23 Score=41.98 Aligned_cols=87 Identities=9% Similarity=-0.012 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh----cCCChhHH
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL----EGDSDYVY 475 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~ 475 (525)
.+....+.+.+..++++|...+.+- ..-++ -..+...+..+....|+..|..+++.--.. +|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3445556677777777776666543 11112 123444555566677888888888875553 36677777
Q ss_pred HHHHHHHhhccChhHHHHHH
Q 048766 476 VMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~ 495 (525)
..|+.+|- .||.+++..++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 77777764 56777666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.043 Score=42.43 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhhcCCChhH
Q 048766 454 LDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~ 474 (525)
...|...|+++++.-|++..+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 668888889999988976544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.77 Score=46.12 Aligned_cols=177 Identities=12% Similarity=0.051 Sum_probs=120.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 41 STALMGFYRKINSLADAHKMFVEIPQPSVV---SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 41 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
...-+..+.+...++-|+.+...-..+... ........+.+.|++++|...|-+-... +.| ..++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 345677777788888888877655432111 2233344566789999999888776542 223 2355666666
Q ss_pred CChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChh--hHHHHHHHHHhCCChHHHHHHHhc
Q 048766 118 GSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII--SWNSVIAASARNGNLELAFGFLHR 195 (525)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 195 (525)
.+...-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.+..+... .+.. -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 777777788899999885 455566889999999999999988887776 2222 245667777777777877777666
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC
Q 048766 196 LPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS 229 (525)
Q Consensus 196 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 229 (525)
... +... +-..+-..+++++|.+.+..++-
T Consensus 489 ~~~-he~v---l~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 489 FKK-HEWV---LDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred hcc-CHHH---HHHHHHHhcCHHHHHHHHhcCCH
Confidence 543 2222 23334456889999999988863
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.71 Score=45.70 Aligned_cols=352 Identities=14% Similarity=0.099 Sum_probs=178.8
Q ss_pred HHhcCChHHHHHHHHHHH--------hcCCCCCHhhHHHH-----HHHHcccCChHHHHHHHHHHHHcccCCCcchhhHH
Q 048766 79 YVQSGKYRKALNLFVELE--------RSEIYADAYSFTSA-----LAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCL 145 (525)
Q Consensus 79 ~~~~~~~~~A~~~~~~m~--------~~~~~p~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 145 (525)
+.+..++++-..+.+.+. .-|++.+..-|..+ |.-+...+.+..|.++-..+...-.. ...+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 344555665555444432 34677666666544 45556677888888887776332111 14677777
Q ss_pred HHHHHhcC---CHHHHHHHHhhccC--CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcc--------hHHHHHHHHH
Q 048766 146 IDMYGKCG---SVEDAIGVFGEMID--KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTI--------SYNEVINGIA 212 (525)
Q Consensus 146 ~~~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~ 212 (525)
...+.+.. +.+-+..+-+++.. ....+|..+.......|+++-|..+++.=+....+ -+...+.-..
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 77777663 33334444445544 35567888888888999999999988875433222 1222333334
Q ss_pred hcCChHHHHHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHH
Q 048766 213 QFGDIEDAIMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHS 291 (525)
Q Consensus 213 ~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 291 (525)
+.|+.+-...++-.+.. .+... .+.-..+...|..+|.+..+.. +..+ +-..|....+....-.+.-
T Consensus 558 es~d~~Li~~Vllhlk~~~~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~ 625 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKLNRSS------LFMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHL 625 (829)
T ss_pred hcCCchhHHHHHHHHHHHHHHHH------HHHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhh
Confidence 44444444443333221 00000 1111233445556665544421 1111 1111212222221111111
Q ss_pred HH-HHh-CCCchHHHHHHHHHHHHcCCCHHHHHH----------HHHhcc-C----CCHhHHHHHHHHHHhcCChhHHHH
Q 048766 292 CV-IKQ-GLDASIVVASALLDMYSKCGQVEIADS----------MFRSLC-R----KNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 292 ~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~----------~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
+- ... .+.+-..........+.+.....-..+ +.+.+. + -...+.+--+.-+...|+..+|.+
T Consensus 626 q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~q 705 (829)
T KOG2280|consen 626 QASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQ 705 (829)
T ss_pred hhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHH
Confidence 11 000 011222222333344444433221111 111111 0 111234444555666777777777
Q ss_pred HHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCC
Q 048766 355 LFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGF 434 (525)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (525)
+-.+. .-||...|..-+.++...++ +++..++-+... ++.-|...+..+.+.|+.++|.+.+.+.+.
T Consensus 706 l~~~F-----kipdKr~~wLk~~aLa~~~k-weeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 706 LKSDF-----KIPDKRLWWLKLTALADIKK-WEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHhc-----CCcchhhHHHHHHHHHhhhh-HHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 76665 35677777777777777777 766666554332 244566667777788888888888777642
Q ss_pred CCchhHHHHHHHHHhcCCChHHHHHHHH
Q 048766 435 GSYGVVWRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
.+ ....+|.+.|++.+|.+..-
T Consensus 773 l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 773 LQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hH------HHHHHHHHhccHHHHHHHHH
Confidence 22 34556667777777766543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.19 Score=43.96 Aligned_cols=168 Identities=12% Similarity=0.037 Sum_probs=99.6
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 320 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
...+.++++..+....--.-.......|++.+|..+|+..... .| +......+..++...|+ .+.|..++..+-.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~-~e~A~~iL~~lP~ 196 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGD-VEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCC-hHHHHHHHHhCcc
Confidence 3344444444332221122233456677888888888877773 33 34555567777777787 8888888876643
Q ss_pred hhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhHH
Q 048766 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYVY 475 (525)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~ 475 (525)
+ --.........-+..+.+.....+...+-.++...| |...-..+...+...|+.+.|.+.+-.+++.+ -.+..+-
T Consensus 197 ~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 197 Q-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred c-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 2 111111112233455555555555555555553345 55666677777888888888888887777764 4566777
Q ss_pred HHHHHHHhhccChhHHH
Q 048766 476 VMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~ 492 (525)
..++.++...|.-+.+-
T Consensus 276 k~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 276 KTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 77787777777544433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.22 Score=45.87 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-------CcccHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 048766 206 EVINGIAQFGDIEDAIMILSSMPSP-------NSSSWNSILTGYVN---RNRVPEALHLFGEMQSKDVPMDEYTFSTMLS 275 (525)
Q Consensus 206 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 275 (525)
.++-+|....+++.-+++.+.+... ....-....-++.+ .|+.++|++++..+......+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455555555555555555431 11111223344455 7788888888888666656777777777665
Q ss_pred Hhcc---------ccchHHHHHHHHHHHH
Q 048766 276 GIAG---------LSALTWGMLIHSCVIK 295 (525)
Q Consensus 276 ~~~~---------~~~~~~a~~~~~~~~~ 295 (525)
.|-. ....++|...|.+..+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 5421 2234555555554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0051 Score=34.49 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
..|..++..+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777888888888888888888888754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0055 Score=34.37 Aligned_cols=32 Identities=19% Similarity=0.082 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677778888888888888888888888885
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.054 Score=40.59 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-CCCh---hHHHHHHHHHhhccCh
Q 048766 415 LMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLE-GDSD---YVYVMLCNLYTSHGNW 488 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 488 (525)
++...|+.+.|++.|.+. ..- ..+..|+.-..++.-+|+.++|+.-+.+++++. |... .+|.--+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555666666655553 212 234455555555555666666666666666553 2221 2244445555556666
Q ss_pred hHHHHHHHHHHHcC
Q 048766 489 DVASVMRNFMRERG 502 (525)
Q Consensus 489 ~~A~~~~~~~~~~~ 502 (525)
+.|+.-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66665555555444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.61 Score=40.51 Aligned_cols=192 Identities=15% Similarity=0.075 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLC-----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVL 376 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~ 376 (525)
.........+...+.+..+...+.... ......+......+...+++..+.+.+....... ++. .......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD---PDPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC---CCcchHHHHHH
Confidence 334444444555555555555444432 1223344444445555555566666666555522 221 1111112
Q ss_pred H-HHcCCCCCcchHHHHHHHhhhhhCCCC----ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc--hhHHHHHHHHH
Q 048766 377 A-ACSHTDIPFDKVSEYFESMTKDYGIKP----TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY--GVVWRALLSAS 448 (525)
Q Consensus 377 ~-~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~ 448 (525)
. .+...+. ++.+...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+
T Consensus 137 ~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 137 LGALYELGD-YEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 2 4555555 6666666665532 122 2222333333344556666666666654 22222 34455555555
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
...++++.|...+..+....|.....+..++..+...|.++++...+.+..+.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666666666666666666644445555555555555566666666555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.1 Score=43.37 Aligned_cols=181 Identities=10% Similarity=0.077 Sum_probs=104.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 200 DTISYNEVINGIAQFGDIEDAIMILSSMPSPNS---SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
+..+|...+......|+.+.+.-+|++..-|-. ..|--.+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345677777777788888888888877653221 23444444444557777777776655554333333333222333
Q ss_pred hccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHH---HHHHhcc--CCCHhHHHHHHHH-----HHhc
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD---SMFRSLC--RKNLVTWNAMITG-----YARN 346 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~--~~~~~~~~~l~~~-----~~~~ 346 (525)
....|+++.|..+++.+.+.- +.-..+-..-+....+.|+.+.+. +++.... +.+......+.-- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 456678888888888887665 333444444556666777777776 4443333 2222222222222 2235
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCC
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 383 (525)
++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 455 ~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI--LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCC
Confidence 7788888888888773 3445566666666555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.09 Score=41.94 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhh----hhCCCCChhH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTK----DYGIKPTVEH 408 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 408 (525)
....++..+...|+++.|+.+++++.. ..| +...+..++.++...|+ ...|.+.|+.+.+ +.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344556666778888888888888877 455 56777788888888887 8888877776543 2366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.21 Score=43.60 Aligned_cols=142 Identities=8% Similarity=0.046 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHH
Q 048766 351 KVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (525)
...+++++... .+....+ .-.......|+ +.+|...|+..... .+-+......++++|...|+.+.|..++.
T Consensus 121 qlr~~ld~~~~----~~~e~~~-~~~~~~~~~e~-~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 121 QLRQFLDKVLP----AEEEEAL-AEAKELIEAED-FGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HHHHHHHHhcC----hHHHHHH-HHhhhhhhccc-hhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 44455555432 2333333 33334566777 99999999988753 23346677788999999999999999999
Q ss_pred HhCCCCchhHHHH---HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 431 ELGFGSYGVVWRA---LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 431 ~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.++..-....+.. -+..+.+..+..+. ..+++-...+|+|...-..|+..+...|+.++|.+.+=.+..+
T Consensus 193 ~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 193 ALPLQAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred hCcccchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9854444333333 23333333333332 2344556678999999999999999999999999988777665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.33 Score=36.67 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=83.5
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
.-.|..++..++..+.... .+..-++.++--....-+ -+-..+.++.+-+- .|. ..+|+..
T Consensus 13 ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~-C~yvv~~LdsIGki----FDi----------s~C~NlK 73 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAAD-CDYVVETLDSIGKI----FDI----------SKCGNLK 73 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH---HHHHHHHHHHHGGG----S-G----------GG-S-TH
T ss_pred HHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhc-hhHHHHHHHHHhhh----cCc----------hhhcchH
Confidence 3467778888888877662 244455555544444444 55555666555432 222 1234444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 424 RAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 424 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.....+-.++ .+.......+.....+|+-+.-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++.+.-++|+
T Consensus 74 rVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 74 RVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4444444432 34445566677788889999999999988865544889999999999999999999999999999887
Q ss_pred c
Q 048766 504 R 504 (525)
Q Consensus 504 ~ 504 (525)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=43.04 Aligned_cols=57 Identities=19% Similarity=0.018 Sum_probs=53.0
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
..+....|+.+.|++.|.+++.+-|.++++|+.-+.++.-+|+.++|+.-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999999999999999999999988774
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.039 Score=44.81 Aligned_cols=101 Identities=5% Similarity=-0.050 Sum_probs=56.5
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhc
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGA 450 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~ 450 (525)
-+...|+ +++|..-|..+... .++. ...|..-+.++.+.+.++.|+.-..+. ...|. ...+..-..+|-+
T Consensus 104 ~~F~ngd-yeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGD-YEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred Hhhhccc-HHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3555666 77777777666642 2222 223334444556666777666666554 33343 2233333455666
Q ss_pred CCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
...+++|++-|+++++.+|....+....+++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 6677777777777777777655555544444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.067 Score=40.96 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=29.0
Q ss_pred CCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 365 LQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
..|+..+..+++.+|+..++ +..|.++++...+.++++.+...|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~-i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGD-IFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45556666666666665555 66666666666666555555555555544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.13 Score=48.36 Aligned_cols=56 Identities=14% Similarity=0.001 Sum_probs=33.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCC---chhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGS---YGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
..+.....+.|+.++|++.++++ ...| ...+...|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44555566667777777777666 2222 12345566666677777777777666653
|
The molecular function of this protein is uncertain. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.073 Score=42.23 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=38.3
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHH-HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCC
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLN-VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 421 (525)
+...|++++|..+|+-+.. ..|...-|.. |...+...+. +++|+..|...... . .-|+..+...+..|...|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCC
Confidence 3445555555555555555 3332222322 2222333333 55555555544322 1 1233333444555555555
Q ss_pred hHHHHHHHHHh
Q 048766 422 VWRAQRMIREL 432 (525)
Q Consensus 422 ~~~A~~~~~~~ 432 (525)
.++|...|+..
T Consensus 121 ~~~A~~~f~~a 131 (165)
T PRK15331 121 AAKARQCFELV 131 (165)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.1 Score=40.21 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=62.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 411 (525)
+..+-...+.++.+.++ +.++..+-.+.+ .+|...-...+.++...+.....+...+..+.. .++..+-..
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 33333444444445444 344444444443 233333334444444432112344444444442 344455555
Q ss_pred HHHHHhccCChHHHHHHH-HHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 412 MIRLMGQKGEVWRAQRMI-RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
.+.++++.|+.. |+..+ +.+.. ++ .....+.++...|+. +|+..+.++.+..| |+.+.....+++
T Consensus 212 A~~aLg~~~~~~-av~~Li~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKDKR-VLSVLIKELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCChh-HHHHHHHHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 556666666533 33333 33321 22 223455556666664 56677777666666 455444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.58 Score=36.93 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=55.0
Q ss_pred hHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 048766 5 VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84 (525)
Q Consensus 5 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (525)
....++..+...+.......+++.+...+ +.++..++.++..|++.+ ..+..+.++. ..+......+++.|.+.+-
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34567777777777888888888877776 467777888888887643 3444444442 2233334446666666666
Q ss_pred hHHHHHHHHHH
Q 048766 85 YRKALNLFVEL 95 (525)
Q Consensus 85 ~~~A~~~~~~m 95 (525)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.96 E-value=4.1 Score=46.44 Aligned_cols=318 Identities=12% Similarity=0.093 Sum_probs=182.5
Q ss_pred HHHHHHHhCCChHHHHHHHhcC----CC--CCcchHHHHHHHHHhcCChHHHHHHHhc-CCCCCcccHHHHHHHHHhcCC
Q 048766 175 SVIAASARNGNLELAFGFLHRL----PN--PDTISYNEVINGIAQFGDIEDAIMILSS-MPSPNSSSWNSILTGYVNRNR 247 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~----~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 247 (525)
.+..+-.+.+.+..|...+++- .+ .....+..+...|...+++|....+... ..+|+ ....|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 5556677788899999988883 11 1223344555589999998888877763 33343 3344556678899
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 048766 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327 (525)
Q Consensus 248 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 327 (525)
+..|...|+.+.+.+ ++...++..++......+.++......+-......+-....++.-+.+--+.++++..+....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998874 344667777777777777777776655544433322223334444555577888888777766
Q ss_pred ccCCCHhHHHHH--HHHHHh--cCChhHHHHHHHHHhhCCCCCCC---------HhHHHHHHHHHcCCCCCcchHHHHHH
Q 048766 328 LCRKNLVTWNAM--ITGYAR--NGDLTKVIELFEQLKTVRDLQPD---------SVTFLNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 328 ~~~~~~~~~~~l--~~~~~~--~~~~~~a~~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
..+..+|... +..+.+ ..|.-.-.+..+.+++.- +.|- ...|..++....-.. .+.-.+.+.
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e--l~~~~~~l~ 1617 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYEILMKLHLLLE--LENSIEELK 1617 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 4555555554 222222 222222223333333321 1110 122222222222111 111111111
Q ss_pred HhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCC-----CchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 395 SMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFG-----SYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
..........+...|..-+..-....+..+-+--+++. ... .-...|....+.....|.++.|...+-++.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 11110011112222222222111112222222222221 112 225688889999999999999999999998
Q ss_pred hhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 466 KLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 466 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+..+ +.++...+..++..|+...|+.++++..+...+
T Consensus 1698 e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1698 ESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 8884 788999999999999999999999999876553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.1 Score=38.92 Aligned_cols=219 Identities=15% Similarity=0.056 Sum_probs=144.3
Q ss_pred CChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCCHHHHHH
Q 048766 246 NRVPEALHLFGEMQSKDVP-MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ-GLDASIVVASALLDMYSKCGQVEIADS 323 (525)
Q Consensus 246 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 323 (525)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555554443211 12455555566666667777766666666542 334455566666677777777888888
Q ss_pred HHHhccC--CCH-hHHHHHHH-HHHhcCChhHHHHHHHHHhhCCCCCC----CHhHHHHHHHHHcCCCCCcchHHHHHHH
Q 048766 324 MFRSLCR--KNL-VTWNAMIT-GYARNGDLTKVIELFEQLKTVRDLQP----DSVTFLNVLAACSHTDIPFDKVSEYFES 395 (525)
Q Consensus 324 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 395 (525)
.+..... ++. ........ .+...|+++.+...+.+... ..| ....+......+...+. .+.+...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGR-YEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcC-HHHHHHHHHH
Confidence 8877763 222 22333333 68889999999999999866 333 23334444444566777 8999999998
Q ss_pred hhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 396 MTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 396 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.... ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 193 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 193 ALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8753 233 3677888888899999999999999887 33444 445555555555777899999999999999985
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1 Score=38.04 Aligned_cols=19 Identities=11% Similarity=-0.076 Sum_probs=10.2
Q ss_pred cCCChHHHHHHHHHHHhhc
Q 048766 450 ACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~ 468 (525)
..+++.+|+.+|+++....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.032 Score=31.12 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
+|..++..+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888888874
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.9 Score=43.61 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHH
Q 048766 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289 (525)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 289 (525)
...+.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|+.+....+
T Consensus 327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 3344555555555554442 334555555555555666555555554432 23333334444444444444
Q ss_pred HHHHHHhC
Q 048766 290 HSCVIKQG 297 (525)
Q Consensus 290 ~~~~~~~~ 297 (525)
.+.....|
T Consensus 396 ~~~a~~~~ 403 (443)
T PF04053_consen 396 AKIAEERG 403 (443)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 44444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.8 Score=44.58 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=62.3
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHhHHHHHHH-HHcCCCCCcchHHHHHHHhhhhh-CC-CCChhHHHHHHHHHhccCChH
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLA-ACSHTDIPFDKVSEYFESMTKDY-GI-KPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~ 423 (525)
.+.+.|.++++.+.+ .-|+...|...-. .+...|+ +++|++.|++..... .. +.....+.-++..+.-.++++
T Consensus 247 ~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~-~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGN-LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcC-HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 455667777777766 4566555544333 3344455 777777777544210 11 112334455566667777777
Q ss_pred HHHHHHHHh-CCCCchhHHHHHHHH--HhcCCCh-------HHHHHHHHHHHh
Q 048766 424 RAQRMIREL-GFGSYGVVWRALLSA--SGACSDL-------DVARISAAEVIK 466 (525)
Q Consensus 424 ~A~~~~~~~-~~~~~~~~~~~l~~~--~~~~~~~-------~~A~~~~~~~~~ 466 (525)
+|.+.|..+ ....-...+..++.+ +...|+. ++|.++++++-.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777776 222222333222222 2345666 666666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.18 Score=44.60 Aligned_cols=162 Identities=7% Similarity=-0.117 Sum_probs=115.5
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH----HHHHHHhcc
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC----SMIRLMGQK 419 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~ 419 (525)
.-.|+..+|...++++.+. .+.|...+...=.+|...|+ ...-...++++.. ...++...|. .+..++..+
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccc-hhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHh
Confidence 4578888999999998884 35577778888888999998 8888888888875 3456654443 344556789
Q ss_pred CChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC-C---hhHHHHHHHHHhhccChhHHHH
Q 048766 420 GEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGD-S---DYVYVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 420 g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~---~~~~~~l~~~~~~~g~~~~A~~ 493 (525)
|-+++|.+.-++. .++ .|.....+....+...|++.++.+...+--..-.. . ...|-..+..+...+.++.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999887 333 34555566666777789999998887654332111 1 2234566777888899999999
Q ss_pred HHHHHHHcCCccCCccc
Q 048766 494 MRNFMRERGLRKEAGCS 510 (525)
Q Consensus 494 ~~~~~~~~~~~~~~~~~ 510 (525)
+|++=.-....++.+.+
T Consensus 269 IyD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHHhhccchhh
Confidence 99976666666666533
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.1 Score=40.06 Aligned_cols=149 Identities=8% Similarity=-0.021 Sum_probs=82.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--h
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP---DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--V 406 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 406 (525)
...+|..++..+.+.|.++.|...+.++...+ ..+ .+.....-+..+...|+ ..+|...++..... .+... .
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-~~~~~~~~~v~~e~akllw~~g~-~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLN-PSSESLLPRVFLEYAKLLWAQGE-QEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-CcccCCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHH-Hhhhcccc
Confidence 44567778888888888888888888877633 111 23334445556666777 78888887777652 11111 1
Q ss_pred hHHHHHHHHHhccCChHHHHHH-HHHhCCCCchhHHHHHHHHHhcC------CChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRM-IRELGFGSYGVVWRALLSASGAC------SDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
.....+...+.. ..+..... ........-...+..++..+... ++.+++...|.++.+..|....+|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111000 00000000 00000000122333334434344 8899999999999999998888898888
Q ss_pred HHHhhc
Q 048766 480 NLYTSH 485 (525)
Q Consensus 480 ~~~~~~ 485 (525)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 887654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.037 Score=33.21 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
|.++..++.+|.+.|++++|+++++++++..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999999998664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.35 E-value=2.4 Score=39.55 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=97.1
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC-CCCChhHHHHHHHHHhccCChHHHHHHHHH-hCCCCc-hhHHHHHHH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYG-IKPTVEHCCSMIRLMGQKGEVWRAQRMIRE-LGFGSY-GVVWRALLS 446 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~ 446 (525)
..|...+.+..+... ++.|..+|-++.+. + +.+++..+++++..++ .|++.-|-.+|+- +..-|| +......+.
T Consensus 398 ~v~C~~~N~v~r~~G-l~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRG-LEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhh-HHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445666777666666 99999999999887 6 6778899999988765 6888999999985 433344 444466677
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCC--hhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDS--DYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+...+|-+.|..+|+..++.-.++ ...|..++.--..-|+...+..+=+++.+.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7788899999999999776533222 567888888888889888887777766553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.15 Score=43.94 Aligned_cols=98 Identities=8% Similarity=0.089 Sum_probs=75.3
Q ss_pred HHHHhcCC--CCCcccHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccC------------
Q 048766 58 HKMFVEIP--QPSVVSWNSLISGYVQS-----GKYRKALNLFVELERSEIYADAYSFTSALAACGQLG------------ 118 (525)
Q Consensus 58 ~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 118 (525)
...|...+ +.|-.+|-..+..+... +..+--...++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45555555 36777787777776543 566777778889999999999999999999876532
Q ss_pred ----ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCH
Q 048766 119 ----SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155 (525)
Q Consensus 119 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (525)
+-+-+.+++++|...|+-||..+-..|++++.+.+..
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2244778899999999999999999999998877753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.33 Score=46.49 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=76.4
Q ss_pred HHhccCchhhhhHHHHHH-HHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHH
Q 048766 12 ASSDLGWDTYCQQLHCYI-LKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALN 90 (525)
Q Consensus 12 ~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 90 (525)
...-.|+++.+.++...- +-..++ ....+.++..+-+.|-.+.|+++...- ..-.....+.|+.+.|.+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHH
Confidence 344567777766665411 111112 334667777777778888777765421 223334445666666665
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCCh
Q 048766 91 LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDI 170 (525)
Q Consensus 91 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 170 (525)
+.++ .++...|..|.....+.|+++-|++.+.+.. -+..|+-.|.-.|+.+...++.+.....+.
T Consensus 340 ~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 5432 2245566666666666666666666665432 233444555556666555555544433322
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHhcC
Q 048766 171 ISWNSVIAASARNGNLELAFGFLHRL 196 (525)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 196 (525)
++....++.-.|+.++..+++.+.
T Consensus 405 --~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 --INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333334444455555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.22 Score=38.19 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
..++..++.++++.|+.+....+++..-. +.++... .+. . ........|+..+..++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg---I~~~~~~----------~~~-~---------~~~~spl~Pt~~lL~AI 58 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG---IDVNGKK----------KEG-D---------YPPSSPLYPTSRLLIAI 58 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC---CCCCCcc----------ccC-c---------cCCCCCCCCCHHHHHHH
Confidence 34566666777777777777666665554 4333210 000 0 11222566777777778
Q ss_pred HHHHhccCChHHHHHHHHHh----CCCCchhHHHHHHHHH
Q 048766 413 IRLMGQKGEVWRAQRMIREL----GFGSYGVVWRALLSAS 448 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 448 (525)
+.+|+..|++..|+++++.. +++-+...|..|+.-+
T Consensus 59 v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 59 VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88887778888887777765 5555566777666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.04 Score=31.31 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998854
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.6 Score=36.40 Aligned_cols=182 Identities=10% Similarity=0.024 Sum_probs=101.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHh-HHHHHH--HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLV-TWNAMI--TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (525)
|.-+.+||.+.--+...|+++.|.+.|+...+.|+. -|..+= -++.-.|++.-|.+-+...-+. .|+.+ |..+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~L 171 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSL 171 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHH
Confidence 334678888888888999999999999998765543 222222 2233468888888877777663 33322 2222
Q ss_pred HHHHcCCCCCcchHHHHH-HHhhhhhCCCCChhHHHH-HHHHHhccCChHHHHHHHHHhCCCC------chhHHHHHHHH
Q 048766 376 LAACSHTDIPFDKVSEYF-ESMTKDYGIKPTVEHCCS-MIRLMGQKGEVWRAQRMIRELGFGS------YGVVWRALLSA 447 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~ 447 (525)
=-.+....-++.+|..-+ ++.. + .+..-|.. ++..|.-.=..+.+.+-...-..+. -..++..+++-
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 222222222266666443 3333 2 23333433 2333322222222222222211111 13566778888
Q ss_pred HhcCCChHHHHHHHHHHHhhcC----CChhHHHHHHHHHhhccChh
Q 048766 448 SGACSDLDVARISAAEVIKLEG----DSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~ 489 (525)
+...|+.++|..+|+-++..+- +...++..|+.....+.+.+
T Consensus 247 ~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhh
Confidence 8899999999999999888652 23444555555555544433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.2 Score=40.24 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=62.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCC--CC--CHhHHHHHHHHHcCCCCCcchHHHHHHHhhh---hhCCCCC-----
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDL--QP--DSVTFLNVLAACSHTDIPFDKVSEYFESMTK---DYGIKPT----- 405 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~----- 405 (525)
++..++...+.++++++.|+...+-..- .| ....+..+-..|....+ +++|.-+..+..+ ..++..-
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D-~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD-YEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh-hhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3445555556666666666655442100 11 12345555555555555 5555544333321 1121111
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
......+.-++...|+.-+|.+..++. +..+. ......+...|...|+.+.|..-|+++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 111223344555666666666666553 22222 23445556666777777777777776654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.4 Score=35.46 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHcccCChH
Q 048766 90 NLFVELERSEIYADAYSFTSALAACGQLGSLQ 121 (525)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 121 (525)
+.++.+.+.+++|+...+..++..+.+.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344444445555555555555555544433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.5 Score=35.40 Aligned_cols=134 Identities=14% Similarity=0.163 Sum_probs=92.1
Q ss_pred HHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCC--ChHHHHHHHhcCCCCCcc
Q 048766 125 AIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNG--NLELAFGFLHRLPNPDTI 202 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 202 (525)
+.++.+.+.+++|+...+..+++.+.+.|.+.....++.--+-+|.......+-.+.... -.+-|++++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~---- 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT---- 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh----
Confidence 455666677888888899999999999998888877776655555444433333332221 14556677776632
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048766 203 SYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKD 262 (525)
Q Consensus 203 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 262 (525)
.+..++..+...|++-+|.++.+.....+......++.+..+.++...-..+|+-..+.+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 344567788888999999998888655555556777888888888777777777666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.06 Score=30.56 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+|..|+..|.+.|++++|++++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35678888888899999999999866543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.5 Score=40.19 Aligned_cols=63 Identities=6% Similarity=0.053 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
..+-..+...+.+.|+ .++|++.++++.+++...........|+..+...+.+.++..++.+.
T Consensus 259 ~y~KrRLAmCarklGr-~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGR-LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3334456677788899 99999999999875333234557788999999999999999999987
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.15 Score=44.80 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.++..++..+...|+++.+.+.+++++..+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666777777778888888888888877777778888888888888888877777655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.86 Score=34.56 Aligned_cols=119 Identities=11% Similarity=-0.010 Sum_probs=54.8
Q ss_pred HhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---------------------CCccc
Q 048766 13 SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---------------------PSVVS 71 (525)
Q Consensus 13 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~ 71 (525)
..-.|..++..++......+. +..-+|=++--....-+=+...++++.+-. .+...
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence 344577777777777776654 222222222222222223333333333221 22233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHccc
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 135 (525)
.+.-+..+..+|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 445555556666666666666655542 245555566666666666666666666666655553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.7 Score=41.57 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=73.0
Q ss_pred hccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHH
Q 048766 14 SDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALN 90 (525)
Q Consensus 14 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~ 90 (525)
-+.|++++|...+-+-+..- .|+ -++.-|....++..-...++.+.+ .+...-+.|+.+|.+.++.++-.+
T Consensus 379 y~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHH
Confidence 35677887776665543221 222 234444555555555555555554 455556677777777777777666
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC
Q 048766 91 LFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167 (525)
Q Consensus 91 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (525)
..+.-. .|.. ..-....+..|.+.+-.++|..+-..... +..+...++ -..+++++|.+.+..++-
T Consensus 453 fI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 453 FISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCH
Confidence 655433 2211 11234455666666666666554443221 222333333 345677777777776643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.1 Score=35.68 Aligned_cols=94 Identities=17% Similarity=0.025 Sum_probs=53.9
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChh-HHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVE-HCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A 457 (525)
...++ .+.+..++..+. -+.|... .-..-+..+.+.|++.+|+.+|+++ ...|....-..|+..|....+-..=
T Consensus 21 l~~~~-~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGD-PDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCC-hHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 44555 777777777776 4455422 2223345567788888888888887 3344444455555555544333333
Q ss_pred HHHHHHHHhhcCCChhHHHHH
Q 048766 458 RISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l 478 (525)
....+++++.+| ++.+...+
T Consensus 97 r~~A~evle~~~-d~~a~~Lv 116 (160)
T PF09613_consen 97 RRYADEVLESGA-DPDARALV 116 (160)
T ss_pred HHHHHHHHhcCC-ChHHHHHH
Confidence 445555666665 45544433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.081 Score=29.39 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.++..++.++...|++++|++.+++..+..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=3.1 Score=37.29 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh----HHHHHHHHHH
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKY----RKALNLFVEL 95 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~A~~~~~~m 95 (525)
|..+....+..+...|..+-...+..-+..+|...-...+.++.+-|+. .++...+..+
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 4444444455555444432222222222234444444444445554442 2344444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.27 Score=38.99 Aligned_cols=81 Identities=14% Similarity=-0.057 Sum_probs=53.4
Q ss_pred HHHHHHHH---HhccCChHHHHHHHHHh-CCCCchhHHHH-HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 408 HCCSMIRL---MGQKGEVWRAQRMIREL-GFGSYGVVWRA-LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 408 ~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+...|+.. -.+.++.+++..++..+ -..|....... -...+...|++++|+++|+.+.+-.|..+..--.++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34444443 34677888888888877 33454433332 244566788888888888888777777776666667777
Q ss_pred hhccCh
Q 048766 483 TSHGNW 488 (525)
Q Consensus 483 ~~~g~~ 488 (525)
...|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 666653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.018 Score=45.73 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHH
Q 048766 110 ALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELA 189 (525)
Q Consensus 110 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 189 (525)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666667777777777777665455566777777777777766666666663222 3334455556666666665
Q ss_pred HHHHhcC
Q 048766 190 FGFLHRL 196 (525)
Q Consensus 190 ~~~~~~~ 196 (525)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.46 E-value=3.5 Score=37.05 Aligned_cols=60 Identities=7% Similarity=-0.047 Sum_probs=29.2
Q ss_pred HHHHHHHHhccccchH---HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Q 048766 269 TFSTMLSGIAGLSALT---WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC 329 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 329 (525)
++..++.++...+..+ +|..+++.+.+.. +..+.++..-+..+.+.++.+.+.+.+..|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 4444555555544433 3334444443222 2233444444555555666666666666665
|
It is also involved in sporulation []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=4.7 Score=38.44 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
+.+.....+++..+.....+.-.+.+..++. ..+-..|..++..|... ..+.-..+|+++.+ ..-|......-+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve---~dfnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE---YDFNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH---hcchhHHHHHHH
Confidence 3344455566666666666666666666665 34556677777777776 45667777777776 444444444433
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCC------hhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchhHHHHHHH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPT------VEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGVVWRALLS 446 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~ 446 (525)
..+....+ ...+..+|.++..+ +-|. ...|..+...- ..+.+....+...+ +...-...+..+..
T Consensus 139 a~~yEkik-~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 139 ADKYEKIK-KSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHhc-hhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 33434455 67777777776653 2221 22344443321 34555555555554 33344455556667
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
-|....++++|++++..+++.+-.|.-+...++.-+..
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 77778888888888888888876666665555555443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.12 Score=32.38 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
...+..++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 455777889999999999999999999998876654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.0076 Score=47.96 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHH
Q 048766 8 HLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRK 87 (525)
Q Consensus 8 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 87 (525)
.++..+...+.+.....+++.+.+.+...+...++.++..|++.++.++..++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777888899999999999999887677799999999999999888888888884433 333567777777788888
Q ss_pred HHHHHHHHH
Q 048766 88 ALNLFVELE 96 (525)
Q Consensus 88 A~~~~~~m~ 96 (525)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 887776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.48 Score=41.04 Aligned_cols=108 Identities=9% Similarity=0.092 Sum_probs=78.4
Q ss_pred HHHHhcCC--CCCcccHHHHHHHHH-----hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc-------------
Q 048766 221 IMILSSMP--SPNSSSWNSILTGYV-----NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL------------- 280 (525)
Q Consensus 221 ~~~~~~~~--~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------------- 280 (525)
++.|..+. +.|-.+|-..+..+. +.++.+-....++.|.+-|+.-|..+|..|+..+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 355556666666554 3467777888889999999999999999999887543
Q ss_pred ---cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH-HHHHHHHHhc
Q 048766 281 ---SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSL 328 (525)
Q Consensus 281 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 328 (525)
.+-+-++.++++|...|+-||..+-..+++++.+.+-. .+..++.--|
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23456778999999999999999999999999887753 3344444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.25 Score=38.42 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=41.8
Q ss_pred ccCChHHHHHHHHHh-CCCCchhHHHH-HHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 418 QKGEVWRAQRMIREL-GFGSYGVVWRA-LLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..++++++..++..+ -..|+...... -...+...|++++|+++|+++.+-.|..+..--.++.++...||
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 467777777777766 23333322222 23345567777777777777777666555555555666666655
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.5 Score=35.08 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=67.5
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH-----HHHH
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM-----IRLM 416 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~ 416 (525)
+++.+..++|+.-|..+.+.| ...=+ .............|+ ...|...|+++-.. .|.+.....+ ..++
T Consensus 68 lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgd-ta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGD-TAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhccc-HHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHH
Confidence 356677777888887777765 32211 111122333455666 77777777777654 2322222222 2234
Q ss_pred hccCChHHHHHHHHHhCC--CCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 417 GQKGEVWRAQRMIRELGF--GSY-GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
...|.+++...-.+-+.. +|- ...-..|.-+-.+.|++..|...|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 567777777777766621 222 23345566666677777777777777766
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=3.3 Score=35.81 Aligned_cols=160 Identities=17% Similarity=0.124 Sum_probs=93.1
Q ss_pred HHcCCCHHHHHHHHHhccCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC---C
Q 048766 312 YSKCGQVEIADSMFRSLCRK------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH---T 382 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~ 382 (525)
-.+.|++++|.+.|+.+... ...+.-.++-++.+.++++.|+...++......-.||. .|...+.+++. .
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 34567777777777777521 12244445566677788888888888777743223332 23333333221 1
Q ss_pred C---CCcc---hHHHHHHHhhhhhC---CCCChhH------------HHHHHHHHhccCChHHHHHHHHHh-CCCCc---
Q 048766 383 D---IPFD---KVSEYFESMTKDYG---IKPTVEH------------CCSMIRLMGQKGEVWRAQRMIREL-GFGSY--- 437 (525)
Q Consensus 383 ~---~~~~---~a~~~~~~~~~~~~---~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--- 437 (525)
. ++.. .|..-|+.+..++. ..||... =..+++.|.+.|.+..|..-++++ ..-|+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 1 1122 33344444444321 1112111 124567788999999999999988 21222
Q ss_pred -hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 438 -GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 438 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
...+..+..+|...|-.++|...-+-+-...|+++
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 34566778899999999999888766666667654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.16 E-value=2.2 Score=33.54 Aligned_cols=45 Identities=2% Similarity=0.005 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHccc
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQL 117 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 117 (525)
...++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3445555555555556666666555544 23444555555555543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=7.6 Score=39.15 Aligned_cols=118 Identities=17% Similarity=0.272 Sum_probs=56.2
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHH
Q 048766 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN-PDTISYNEVINGIAQFGDIED 219 (525)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 219 (525)
+....|..+...|++++|-...-.|...+..-|...+..+...++......++=.-++ -++.+|..++..+.. .+...
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~ 472 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKG 472 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHH
Confidence 4445555555556666665555555555555555555555544444333322222211 234455555544444 22222
Q ss_pred HHHHHhcCC--------------------CCCcccHHHHHHHHHhcCChhHHHHHHHHHh
Q 048766 220 AIMILSSMP--------------------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQ 259 (525)
Q Consensus 220 a~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 259 (525)
-.++....+ ..+...-..|+..|...+++..|+.++-..+
T Consensus 473 F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 473 FLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 222211111 0122223346777777777777777776554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.15 Score=28.37 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.+|..++.+|...|++++|+..+++..+..+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.99 E-value=4.5 Score=36.41 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=11.1
Q ss_pred HHHHhhccChhHHHHHHHH
Q 048766 479 CNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~ 497 (525)
+..+.+.++|++|.+.++-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 3345556666666666653
|
It is also involved in sporulation []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.95 E-value=2.2 Score=40.05 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=58.7
Q ss_pred CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC----CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 435 GSYGVVWRALLSASGACSDLDVARISAAEVIKLEG----DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.....+|..++..+.+.|.++.|...+.++...++ ..+.+...-+..+...|+..+|+..++...+..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 34467888999999999999999999999998662 25777888899999999999999999988874333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.92 E-value=10 Score=40.32 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHHHccC--CHHHHHHHHhcCC
Q 048766 35 LSNVFVSTALMGFYRKIN--SLADAHKMFVEIP 65 (525)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~ 65 (525)
.|+ .....+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 44567777888776 6777776665554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.26 Score=43.80 Aligned_cols=93 Identities=9% Similarity=0.057 Sum_probs=52.7
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLD 455 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~ 455 (525)
|.+.|. +++|+.+|.... .+.| ++.++..-..+|.+..++..|..-.+.. ... .-...|..-+.+-...|...
T Consensus 107 yFKQgK-y~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 107 YFKQGK-YEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhccc-hhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 455565 666666666554 3344 5555555556666666666555555443 111 11223333344444567788
Q ss_pred HHHHHHHHHHhhcCCChhHH
Q 048766 456 VARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~ 475 (525)
+|.+-++.+++++|.+.+.-
T Consensus 183 EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHhHHHHHhhCcccHHHH
Confidence 88888888888888755443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.14 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++..++.++.+.|++++|.+.|+++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 455667777777777777777777766543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.63 E-value=7.4 Score=39.96 Aligned_cols=191 Identities=15% Similarity=0.087 Sum_probs=107.6
Q ss_pred HHcCCCHHHHHHHHHhcc----CCCH-------hHHHHHH-HHHHhcCChhHHHHHHHHHhhCC---CCCCCHhHHHHHH
Q 048766 312 YSKCGQVEIADSMFRSLC----RKNL-------VTWNAMI-TGYARNGDLTKVIELFEQLKTVR---DLQPDSVTFLNVL 376 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~ 376 (525)
.....++++|..++.++. .++. ..|+.+- ......|+++.|+++.+.....= ...+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677788877777663 2221 1455443 23345788899988888776631 0122345555666
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH---H--HHHHhccCChHH--HHHHHHHh-----CCCCc----hhH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS---M--IRLMGQKGEVWR--AQRMIREL-----GFGSY----GVV 440 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~g~~~~--A~~~~~~~-----~~~~~----~~~ 440 (525)
.+..-.|+ +++|..+.+...+. .-..+...+.. + ...+...|+... ....+... +..|- ..+
T Consensus 505 ~a~~~~G~-~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 505 EAAHIRGE-LTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred HHHHHhch-HHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 67777888 89998887776543 22233333322 2 223456673332 23333322 22222 223
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc----CCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCC
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLE----GDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEA 507 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 507 (525)
...++.++.+ .+.+..-....++.. |... ..+..|+.+....|+.++|...++++........+
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3334444443 566655555555543 3222 22347888899999999999999998876665543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.13 Score=28.31 Aligned_cols=31 Identities=26% Similarity=0.032 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
+..++.++.+.|++++|.+.|+++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456777778889999999999999888853
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.57 Score=38.30 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=38.0
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCCh----hHHHHHHHHHhccCChHHHHHHHHHhCCCCc--hhHHHHHHHHHhc
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTV----EHCCSMIRLMGQKGEVWRAQRMIRELGFGSY--GVVWRALLSASGA 450 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~ 450 (525)
..+...++ +++|...++..... +.|. ..-..|.+.....|.+++|+..++... .++ ......-+..+..
T Consensus 97 k~~ve~~~-~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANN-LDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhcc-HHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHH
Confidence 34455555 55555555544421 1111 111223344445555555555555432 111 1112223344555
Q ss_pred CCChHHHHHHHHHHHhhc
Q 048766 451 CSDLDVARISAAEVIKLE 468 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~ 468 (525)
.|+-++|...|+++++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 555555555555555554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.1 Score=42.03 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=74.9
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
..|+ .-.|.+-+....+++ +.++.........+...|+++.+...+... -......+...++......|++++|.
T Consensus 301 ~~gd-~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGD-IIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccC-HHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3454 444444333333322 223333333334455667777777776654 12233445566677777777777777
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCccc
Q 048766 459 ISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCS 510 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 510 (525)
...+-++..+-+++++....+..-...|-++++...|+++...+.+.+.|.-
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 7777777766666666666666666667777777777777766665555543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.44 Score=38.44 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+++|+.-|++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.05 E-value=1 Score=37.09 Aligned_cols=92 Identities=7% Similarity=-0.150 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh---CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhHHH---
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL---GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYVYV--- 476 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~--- 476 (525)
..+..+++.|.+.|+.++|.+.+.++ ...+. ...+..++......+++..+...+.++...- +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667788888888888888888887 11222 3455667777777888888888888877643 33333222
Q ss_pred -HHHHHHhhccChhHHHHHHHHH
Q 048766 477 -MLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 477 -~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
.-+-.+...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 2233445577888888777443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.3 Score=34.72 Aligned_cols=58 Identities=9% Similarity=-0.093 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
+......+.+...+++|-..+.+-.... |+-...+...+-+|....|+..|...++.-
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 3445566777778888777666544321 433455777777778888999998888654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.02 E-value=6 Score=34.85 Aligned_cols=60 Identities=13% Similarity=-0.087 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+......|..+|.+.+|.++-++++.++|-+...+..|...+...||--+|...++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344566788999999999999999999999999999999999999999999999988854
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=2.3 Score=35.02 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=45.2
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCCH------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHH
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPDS------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMI 413 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 413 (525)
.-+...|++++|..-|.+..+ ..|.. ..|..-..++.+.+. ++.|+.-..+.+ .+.|+ ......-.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale---~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKai---el~pty~kAl~RRA 175 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE---SCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAI---ELNPTYEKALERRA 175 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH---hCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhH---hcCchhHHHHHHHH
Confidence 345666777777777776666 33321 223333345556665 666666555554 22332 12222234
Q ss_pred HHHhccCChHHHHHHHHHh
Q 048766 414 RLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~ 432 (525)
.+|.+...+++|++-+..+
T Consensus 176 eayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHHhhhhHHHHHHHHHHH
Confidence 4566666666666666665
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.17 Score=26.17 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhhccChhHHHHHHH
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
.+...++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.37 Score=42.86 Aligned_cols=90 Identities=13% Similarity=-0.125 Sum_probs=72.9
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+..|.++|.+++|+..+... ...| ++..+..-..+|.+.+.+..|+.-...++.++-.-.-+|..-+.+-...|+..|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45788999999999999874 6666 677778888899999999999999999999886556677777777778888888
Q ss_pred HHHHHHHHHHcC
Q 048766 491 ASVMRNFMRERG 502 (525)
Q Consensus 491 A~~~~~~~~~~~ 502 (525)
|.+-++..++..
T Consensus 184 AKkD~E~vL~LE 195 (536)
T KOG4648|consen 184 AKKDCETVLALE 195 (536)
T ss_pred HHHhHHHHHhhC
Confidence 887777665543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.54 Score=33.51 Aligned_cols=52 Identities=21% Similarity=0.096 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC--ChhHHHHHHHHHhhccCh
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGD--SDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 488 (525)
|......+...+...|++++|++.+-++++.+|+ +..+-..|+.++...|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3455566666666777777777777777766543 345556666666666653
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.84 Score=40.36 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
...+-.+|.+.++++.|+++.+.++.+.|+++.-+.--|-+|.+.|.+..|..=++...+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4455667788899999999999999999999988888899999999999999888888777654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.46 E-value=3.8 Score=37.01 Aligned_cols=134 Identities=10% Similarity=0.062 Sum_probs=85.8
Q ss_pred hhhhhHHHHHHHHhCCCchHHHHHHHHHHHHc--cC----CHHHHHHHHhcCCC-------CCcccHHHHHHHHHhcCCh
Q 048766 19 DTYCQQLHCYILKSGFLSNVFVSTALMGFYRK--IN----SLADAHKMFVEIPQ-------PSVVSWNSLISGYVQSGKY 85 (525)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~ 85 (525)
+.+...+++.+.+.|+..+..++-+..-.... .. ...+|.++|+.|.+ ++-.++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888999999998888777664444433 22 36678889998876 344455555544 33333
Q ss_pred ----HHHHHHHHHHHhcCCCCCHh--hHHHHHHHHcccCC--hHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 86 ----RKALNLFVELERSEIYADAY--SFTSALAACGQLGS--LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 86 ----~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
+.+..+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 56677888888877766433 34444443333322 44788889999999988888777766544433333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.84 Score=40.27 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=50.1
Q ss_pred CchHHHHHHHHHHHHccCCHHHHHHHHhcCCC-------CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhH
Q 048766 35 LSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-------PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSF 107 (525)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 107 (525)
+.+..+...++..-....+++.+...+=.+.. ++...+ ..++.+ -.-++++++.++..=...|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 34444444555544445556666655544433 121111 122222 223555666666655566666666666
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHc
Q 048766 108 TSALAACGQLGSLQLGMAIHSKIVKY 133 (525)
Q Consensus 108 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 133 (525)
..+|..+.+.++...|.++.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666666665555544
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.75 Score=35.03 Aligned_cols=73 Identities=4% Similarity=-0.037 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHhccCCh---HHHHHHHHHh-C-CCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 403 KPTVEHCCSMIRLMGQKGEV---WRAQRMIREL-G-FGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
.++..+-..+.+++.+..+. .+.+.+++++ + ..|+ ......|.-++.+.|+++.++++.+.+++.+|+|+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 56667777778888776654 4566777776 2 3333 34556677889999999999999999999999776553
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.06 E-value=4.4 Score=31.75 Aligned_cols=54 Identities=6% Similarity=-0.194 Sum_probs=30.0
Q ss_pred HHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC
Q 048766 12 ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ 66 (525)
Q Consensus 12 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 66 (525)
.....++++++..+++.+.-.. |..+..-..-...+...|+|++|.++|+++.+
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3345666677777776665442 22222222333444566777777777777665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.36 Score=28.25 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 441 WRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
+..+...|...|++++|+.+++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 33444444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.6 Score=38.59 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHh
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESM 396 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 396 (525)
+..++..+...|+.+.+...++++.. ..| +...|..++.+|...|+ ...|+..|+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGR-QSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCC-chHHHHHHHHH
Confidence 33344444444555555555555444 233 44445555555555554 44454444443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.81 E-value=7.4 Score=33.12 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=7.1
Q ss_pred hcCCHHHHHHHHhh
Q 048766 151 KCGSVEDAIGVFGE 164 (525)
Q Consensus 151 ~~g~~~~a~~~~~~ 164 (525)
..+.+++|-++|.+
T Consensus 26 g~~k~eeAadl~~~ 39 (288)
T KOG1586|consen 26 GSNKYEEAAELYER 39 (288)
T ss_pred CCcchHHHHHHHHH
Confidence 34455555555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.27 Score=27.39 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=24.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHccCCHHHHH
Q 048766 26 HCYILKSGFLSNVFVSTALMGFYRKINSLADAH 58 (525)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 58 (525)
|.+.++.. |-++..|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556665 677888888888888888888875
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=12 Score=35.46 Aligned_cols=90 Identities=7% Similarity=0.032 Sum_probs=55.4
Q ss_pred ccCChHHHHHHHHHh-CCCCchh----HHHHHHHHHhcCC----ChHHHHHHHH---HHHhhcCCChhHHHHHHHHHhhc
Q 048766 418 QKGEVWRAQRMIREL-GFGSYGV----VWRALLSASGACS----DLDVARISAA---EVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~~~----~~~~l~~~~~~~~----~~~~A~~~~~---~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
..|+.++|+.++-.+ .++||.. .|..++..+.... ..-...+.++ +++-.+.++..++...+.-....
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (831)
T PRK15180 710 TEGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL 789 (831)
T ss_pred ccccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence 358889999888777 5677743 3555666554322 1222223333 33334455555554444445667
Q ss_pred cChhHHHHHHHHHHHcCCccCC
Q 048766 486 GNWDVASVMRNFMRERGLRKEA 507 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~~~~~~ 507 (525)
.++..|+++|+++.+-+-+.+|
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~ 811 (831)
T PRK15180 790 RDYTQALQYWQRLEKVNGPTEP 811 (831)
T ss_pred HHHHHHHHHHHHHHhccCCCcc
Confidence 8999999999999887665555
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.68 E-value=13 Score=35.62 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=43.5
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHh---ccCChHHHHHHHHHh--CCCCchhHHHHHHHHHh
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG---QKGEVWRAQRMIREL--GFGSYGVVWRALLSASG 449 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 449 (525)
++.-+...+. ..+|...+..+.. --+|+...|..+++.-. .+| ...+...++.+ ....++..|...+.--.
T Consensus 466 ~l~~~~e~~~-~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 466 YLDWAYESGG-YKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 3334444444 5566666555543 11234444444444321 122 45555555554 22255555555555555
Q ss_pred cCCChHHHHHHHHHHHh
Q 048766 450 ACSDLDVARISAAEVIK 466 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~ 466 (525)
..|..+.+-.++.++.+
T Consensus 542 ~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMK 558 (568)
T ss_pred cCCCcccccHHHHHHHH
Confidence 66666666666666555
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=6.1 Score=31.86 Aligned_cols=25 Identities=12% Similarity=-0.085 Sum_probs=11.6
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 048766 475 YVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
-..|+-+-.+.|++..|.+.|..+.
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHH
Confidence 3344444444444444444444443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.49 E-value=3.9 Score=29.34 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=61.2
Q ss_pred chhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048766 18 WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELER 97 (525)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 97 (525)
..++|.-+-+.+...+- ....+...-+..+...|++++|..+.+....||...|-++-.. +.|--+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 56788888887766652 2334444445557788999999999999988999988777664 56777777777777777
Q ss_pred cCCCCCHhhHH
Q 048766 98 SEIYADAYSFT 108 (525)
Q Consensus 98 ~~~~p~~~~~~ 108 (525)
+| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 66 45554444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.43 Score=27.87 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56889999999999999999999988763
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.56 Score=25.90 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
.+|..++.+|...|++++|...|++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999987653
|
... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.13 E-value=3.1 Score=35.53 Aligned_cols=91 Identities=11% Similarity=-0.085 Sum_probs=64.0
Q ss_pred HHHHhccCChHHHHHHHHHh---------CCCCchhHHH-----------HHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 413 IRLMGQKGEVWRAQRMIREL---------GFGSYGVVWR-----------ALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~-----------~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
++-+.+.|++.+|..-++++ ..+|..+-|. .+...+...|++-++++.-.+++...|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 44556677777777766653 3344433333 233344567888888888888888888888
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
-+|+.-+.+....=+-++|..-|.++.+..+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 8888888888888888888888877766544
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=27 Score=37.70 Aligned_cols=185 Identities=12% Similarity=-0.028 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (525)
++..+-...+.++...+..+ ...+...+..+|...-...+.++.+.+..+. +.... ..++...-.....++
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l----~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA----TDENREVRIAVAKGL 766 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh----cCCCHHHHHHHHHHH
Confidence 34444444455554332111 2233444445565555555555555444322 12222 244555555555555
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARI 459 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 459 (525)
...+.....+...+..+.. ++++..-...+.++.+.|..+.+...+..+-..++..+-...+.++...+. +++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 5555411223344444432 345666666667777766655443333333223455555555556655554 34555
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 460 SAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 460 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+..+++ +| ++.+....+.++.+.+.-.++...+..+.+
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5555553 34 555666666666554333345555544443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.40 E-value=2.3 Score=35.28 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=49.0
Q ss_pred ccCChHHHHHHHHHhCCCC--chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-CC---ChhHHHHHHHHHhhccChhHH
Q 048766 418 QKGEVWRAQRMIRELGFGS--YGVVWRALLSASGACSDLDVARISAAEVIKLE-GD---SDYVYVMLCNLYTSHGNWDVA 491 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~---~~~~~~~l~~~~~~~g~~~~A 491 (525)
+.|+ ++|.+.|-.+...| +.......+.+|....|.++++.++-+++++. |+ |+.++..|+.++.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 45555555551122 22333334445555788999999999999865 22 688899999999999998887
Q ss_pred H
Q 048766 492 S 492 (525)
Q Consensus 492 ~ 492 (525)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.1 Score=36.22 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=40.8
Q ss_pred HHHHHHHHh-CCCCc-hhHHHHHHHHHhcC-----------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 424 RAQRMIREL-GFGSY-GVVWRALLSASGAC-----------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 424 ~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+|+.-|++. .++|+ ..++..++.++... ..+++|..+|+++...+|+| ..|..-+.+. ++
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~k 125 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AK 125 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HT
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------Hh
Confidence 344444443 44555 45566666655432 23677788888888899954 5555444443 35
Q ss_pred HHHHHHHHHHcCCc
Q 048766 491 ASVMRNFMRERGLR 504 (525)
Q Consensus 491 A~~~~~~~~~~~~~ 504 (525)
|-++..++.+.+..
T Consensus 126 ap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 126 APELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHSSS-
T ss_pred hHHHHHHHHHHHhh
Confidence 67777777665443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=90.19 E-value=3.5 Score=35.21 Aligned_cols=89 Identities=10% Similarity=-0.066 Sum_probs=55.7
Q ss_pred ccCChHHHHHHHHHh-------CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHH-------Hhhc--CC----ChhHH
Q 048766 418 QKGEVWRAQRMIREL-------GFGSY--GVVWRALLSASGACSDLDVARISAAEV-------IKLE--GD----SDYVY 475 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~--p~----~~~~~ 475 (525)
....+++|++.+.-+ +.++. ...+..+.+.|...|+.+.....++++ .+.+ |. .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344555555555432 33333 344556677777777755544444444 4433 22 24567
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
..+|.+..+.|++++|.+.|.++...+-...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 7888999999999999999999987655443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.49 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.053 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..++..+...|+++.|...++++++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444444555555555555554444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.96 E-value=12 Score=32.50 Aligned_cols=165 Identities=10% Similarity=0.077 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCC----C-------CHHHHHHHHHHhccccchHHHHHHHHHHHHhCC-CchHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVP----M-------DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-DASIV 303 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~ 303 (525)
.-+...|...+.+.+..++++++..+-.. - -...|..-|..|..+.+-..-..+|++...... -|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 44566677777777777777776543111 1 123456666667767776777777776644321 23332
Q ss_pred HHHHH----HHHHHcCCCHHHHHH-HHHhcc------CCC---HhHHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCC
Q 048766 304 VASAL----LDMYSKCGQVEIADS-MFRSLC------RKN---LVTWNAMITGYARNGD--LTKVIELFEQLKTVRDLQP 367 (525)
Q Consensus 304 ~~~~l----~~~~~~~g~~~~A~~-~~~~~~------~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~p 367 (525)
+...+ ..+..+.|++++|.. +|+... .|- ..-|-.|...+.+.|= ++. +++.--. -.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyK-NdP 302 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYK-NDP 302 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCC-CCH
Confidence 22211 223445677777643 333332 111 1124444444444331 110 0001100 234
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 410 (525)
.....+.++.+|.... ..+-.+++..-.. .+..|+....
T Consensus 303 EIlAMTnlv~aYQ~Nd--I~eFE~Il~~~~~--~IM~DpFIRe 341 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNND--IIEFERILKSNRS--NIMDDPFIRE 341 (440)
T ss_pred HHHHHHHHHHHHhccc--HHHHHHHHHhhhc--cccccHHHHH
Confidence 4455666777776543 4555555554432 4555554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.86 E-value=15 Score=33.23 Aligned_cols=150 Identities=13% Similarity=0.016 Sum_probs=89.3
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCCHHH
Q 048766 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ---GLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
..|+..+|...++++++. .|.|...+.-.-.+|...|+.+.-...++++... ++|....+...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356666666677776654 4555566666666777777777766666666544 333344444455555667788888
Q ss_pred HHHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC---HhHHHHHHHHHcCCCCCcchHHHHHH
Q 048766 321 ADSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD---SVTFLNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 321 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
|++.-++..+- |.-+-.+....+-..|+..++.+++.+-...- -..+ ..-|-...-.+...+. ++.|+++|+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W-r~s~mlasHNyWH~Al~~iE~ae-ye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW-RQSWMLASHNYWHTALFHIEGAE-YEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch-hhhhHHHhhhhHHHHHhhhcccc-hhHHHHHHH
Confidence 88877777643 33345556666667778888877776544321 0111 1223333334444566 788887776
Q ss_pred Hh
Q 048766 395 SM 396 (525)
Q Consensus 395 ~~ 396 (525)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 54
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.62 E-value=25 Score=35.43 Aligned_cols=274 Identities=9% Similarity=0.009 Sum_probs=153.1
Q ss_pred hHHHHHHHhcCCC-CCcccHHHHHHH-----HHhcCChhHHHHHHHHHhh-------CCCCCCHHHHHHHHHHhcccc--
Q 048766 217 IEDAIMILSSMPS-PNSSSWNSILTG-----YVNRNRVPEALHLFGEMQS-------KDVPMDEYTFSTMLSGIAGLS-- 281 (525)
Q Consensus 217 ~~~a~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~-- 281 (525)
...|.+.++...+ .+...-..+..+ +....+.+.|+.+|+.+.. .|.+ .....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCC
Confidence 3456666665543 233222222222 3355678888888888766 4422 23444445554432
Q ss_pred ---chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHhccC-CCHhHHHHHHHHHHh----cCChhHH
Q 048766 282 ---ALTWGMLIHSCVIKQGLDASIVVASALLDMYSK-CGQVEIADSMFRSLCR-KNLVTWNAMITGYAR----NGDLTKV 352 (525)
Q Consensus 282 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 352 (525)
+...|..++....+.|. |+.......+..... ..+...|.++|..... ..+..+-.+...|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 56778888888888873 343333222222222 2456788888887763 344444334333332 4578888
Q ss_pred HHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHH---hc----cCChHHH
Q 048766 353 IELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLM---GQ----KGEVWRA 425 (525)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A 425 (525)
..++.+..+.| .|...--...+..+.. +. ++.+.-.+..+... +.......-..+.... .. ..+.+.+
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~-~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGV-GR-YDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHcc-cc-ccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 89998888866 3332222233334444 55 56666555555433 3332221111111111 11 2355666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-c--ChhHHHHHHHHH
Q 048766 426 QRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH-G--NWDVASVMRNFM 498 (525)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~ 498 (525)
...+.+.....+......+...|.. ..+++.|...+.++.... ......++.++... | ++..|.+++++.
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 7777766444455555555555433 347899999999888777 77788888888663 1 267888888887
Q ss_pred HHcC
Q 048766 499 RERG 502 (525)
Q Consensus 499 ~~~~ 502 (525)
.+.+
T Consensus 536 ~~~~ 539 (552)
T KOG1550|consen 536 SEED 539 (552)
T ss_pred HhcC
Confidence 6644
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.13 Score=45.65 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=52.6
Q ss_pred ccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 418 QKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
..|.++.|++.|... ..+|. ...+..-..++.+.+....|++-+..+++++|+....|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345555555555544 22332 3333344455566666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCccCCc
Q 048766 496 NFMRERGLRKEAG 508 (525)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (525)
....+.++....+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 6666666554433
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.30 E-value=21 Score=34.16 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=73.1
Q ss_pred HHHhcCChhHHHHHHHHHhhC---C-CCCCC--H-hHHHHHHHHHcCCCCCcchHHHHHHHhhhh------hCCCCChhH
Q 048766 342 GYARNGDLTKVIELFEQLKTV---R-DLQPD--S-VTFLNVLAACSHTDIPFDKVSEYFESMTKD------YGIKPTVEH 408 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~---~-~~~p~--~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 408 (525)
.+.-.|++.+|.+++-..--+ | -+.|. . ..++.+.-...+.+. +..+..+|.+..+. .|++|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~-y~~~~~~F~kAL~N~c~qL~~g~~~~~~- 326 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC-YQASSVLFLKALRNSCSQLRNGLKPAKT- 326 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh-HHHHHHHHHHHHHHHHHHHhccCCCCcc-
Confidence 345578888888877653221 1 01221 1 112334344455565 66666666665531 02222110
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
..+.....-......+-.+...|++-.|.++|.++....-.+|..|..|+.+|...
T Consensus 327 ---------------------~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 ---------------------FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ---------------------eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 00111233445566777888999999999999999998888999999999998764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.29 E-value=4.1 Score=33.56 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=33.2
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHcccCChHHHHHHHHHHHH
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSEIYAD--AYSFTSALAACGQLGSLQLGMAIHSKIVK 132 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 132 (525)
.+..+...|.+.|+.+.|++.|.++.+....|. ...+-.+|+.....+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666555433332 23344555555556666666655555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.29 E-value=8.8 Score=38.53 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=116.0
Q ss_pred CHHHHHHHHHhccC-CCHhHHHHHHHH-----HHhcCChhHHHHHHHHHhh-------CCCCCCCHhHHHHHHHHHcCCC
Q 048766 317 QVEIADSMFRSLCR-KNLVTWNAMITG-----YARNGDLTKVIELFEQLKT-------VRDLQPDSVTFLNVLAACSHTD 383 (525)
Q Consensus 317 ~~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~p~~~~~~~l~~~~~~~~ 383 (525)
+...|..+++.... .+...-..+... +...+|.+.|+.+++.+.+ .| .......+...|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCC
Confidence 35678888887764 344443333333 4456789999999999877 44 3345667777777754
Q ss_pred C----CcchHHHHHHHhhhhhCCCCChhHHHHHHHHHh--c-cCChHHHHHHHHHhCCCCchhHHHHHHHHHh----cCC
Q 048766 384 I----PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG--Q-KGEVWRAQRMIRELGFGSYGVVWRALLSASG----ACS 452 (525)
Q Consensus 384 ~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 452 (525)
. +.+.|..++....+. | .|+... .++..|. . ..+...|.+.|..............+...|. ...
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~-g-~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAEL-G-NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhc-C-CchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCC
Confidence 2 156688998887653 3 344333 3344443 2 2467899999998833344444444443332 345
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-cChhHHHHHHHHHHHcCCccC
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH-GNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 506 (525)
+...|..++.++-+.++ +.+...++..+.-. ++++.+...+..+.+.|....
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH
Confidence 89999999999999983 45444444443332 999999999988888877643
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.68 Score=27.59 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=16.5
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
.|+.+|...|+.+.|+++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 45666666666666666666666443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.75 E-value=21 Score=33.53 Aligned_cols=181 Identities=12% Similarity=0.143 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHhccC----CCHhHHHHHHHH-HHhcCChhHHHHHHHHHhhCCCCCCCH----hHHHHHHHHHcCCCCC
Q 048766 315 CGQVEIADSMFRSLCR----KNLVTWNAMITG-YARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNVLAACSHTDIP 385 (525)
Q Consensus 315 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~ 385 (525)
.|+.+++.+.+..+.. +....+-.|+.+ .....++..|+++|+...- .-|.. .....-+......|+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~- 200 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGD- 200 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCc-
Confidence 5777888888777752 334455555544 3446688888888888776 56643 334444555667777
Q ss_pred cchHHHHHHHhhhhhCCCCChhHH-HHHHHHHhccC---ChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHC-CSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
.+++..+-..-.+++...|-...| ..+...+.+.+ ..+.-..++..|.-......|..+...-...|+.+-|...-
T Consensus 201 ~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 201 ADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888777766666654444432222 22333333332 33444555555542333557777777778889999998888
Q ss_pred HHHHhhcCC----ChhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 462 AEVIKLEGD----SDYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 462 ~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
++++.+... ...+...-+-+-.-..++++|.+.+..+-
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 888887521 11222222222233455666666665543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.59 E-value=2 Score=36.40 Aligned_cols=78 Identities=13% Similarity=-0.031 Sum_probs=32.9
Q ss_pred cchHHHHHHHhhhhhCCCCChhH-HHHHHHHHhccCChHHHHHHHHHh-CCCCchhH-HHHHHHHHhcCCChHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEH-CCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVV-WRALLSASGACSDLDVARISAA 462 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~ 462 (525)
++.|+..|.+.+ -+.|++.+ |..=+..+.+..+++.+..-..+. .+.|+..- ...+.........+++|+..+.
T Consensus 26 y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 26 YDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 555555554444 33444422 233333444444444444433332 33333222 2223333344445555555555
Q ss_pred HHHh
Q 048766 463 EVIK 466 (525)
Q Consensus 463 ~~~~ 466 (525)
++..
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 5543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.44 E-value=19 Score=32.64 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--CC----CHHHHHHHHHhccC-------CCHhHHHHHHHHHHhcCC--
Q 048766 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSK--CG----QVEIADSMFRSLCR-------KNLVTWNAMITGYARNGD-- 348 (525)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~-- 348 (525)
.+...+++.+.+.|+..+..++.+....... .. ....|.++|+.|.+ ++-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3344555556666555555444432222222 11 23455666666652 222334444332 2222
Q ss_pred --hhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCC--cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 349 --LTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIP--FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 349 --~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
.+.+..+|+.+.+.| ...+ ..-+.+-+-++...... ..++.++++.+.+. ++++....|..++-.-.-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~-f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAG-FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHHhcCCch
Confidence 356677888888877 6553 33333333333333221 23677788888777 8888887777665544333333
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.84 E-value=2.1 Score=35.82 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=45.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
..-+..+.+.+...+|+...+.- +.+|. ...-..++..++-.|++++|..-++-+-.+.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34456677788888888887764 44444 4455667778888889998888888888888754
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.52 E-value=3.9 Score=29.53 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH
Q 048766 87 KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146 (525)
Q Consensus 87 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (525)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++..+..- .+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 344555555556667777777777777777777777777777665442 23333555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.96 E-value=9.4 Score=27.50 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048766 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTV 362 (525)
Q Consensus 283 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (525)
.++|..|-+.+...+-. ...+-..-+..+.+.|+++.|..+.+....||...|-.|-. .+.|-.+++..-+.++...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34444444444443311 22222333456778899999999999888888888876644 4667777777778788777
Q ss_pred CCCCCCHhHHHH
Q 048766 363 RDLQPDSVTFLN 374 (525)
Q Consensus 363 ~~~~p~~~~~~~ 374 (525)
| .|....|..
T Consensus 98 g--~p~lq~Faa 107 (115)
T TIGR02508 98 G--DPRLQTFVA 107 (115)
T ss_pred C--CHHHHHHHH
Confidence 6 666665544
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.92 E-value=4.2 Score=29.02 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHH
Q 048766 87 KALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIV 131 (525)
Q Consensus 87 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 131 (525)
++.+-++.+...++.|++....+.+++|.+.+++..|.++++..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555555666666666666666666666666666666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.80 E-value=11 Score=36.92 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=66.0
Q ss_pred hcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 048766 151 KCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSP 230 (525)
Q Consensus 151 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 230 (525)
-.|+++.|..++..+.++ ..+.++.-+.+.|..++|+++-. +|+. -.....+.|+++.|.++..+. .
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~---D~d~-----rFelal~lgrl~iA~~la~e~--~ 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST---DPDQ-----RFELALKLGRLDIAFDLAVEA--N 664 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC---Chhh-----hhhhhhhcCcHHHHHHHHHhh--c
Confidence 346666666666555432 23344555556666666655422 2221 122334566777776665543 3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 297 (525)
+..-|..|..+..+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 444577777777777777777777665543 2334444444454444444444444433
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=86.47 E-value=2.2 Score=22.95 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 452 SDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999888888888877654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.42 E-value=42 Score=34.38 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHhhc---CCChh-HH-----HHHHHHHhhccChhHHHHHHHHHHH
Q 048766 451 CSDLDVARISAAEVIKLE---GDSDY-VY-----VMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.|+..+.......+.... |+... .| ..+...+...|+.++|.....+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 788888777777666543 32222 23 2445558889999999988877643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=86.27 E-value=14 Score=28.96 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=52.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCC---------CCcccHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCHhhHHH
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQ---------PSVVSWNSLISGYVQSGK-YRKALNLFVELERSEIYADAYSFTS 109 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~ 109 (525)
..+.++.-....++....+.+++.+.. .+..+|+.++.+...... --.+..+|..|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456777777777777777777776643 345567777777755544 3446667777777667777777777
Q ss_pred HHHHHccc
Q 048766 110 ALAACGQL 117 (525)
Q Consensus 110 ll~~~~~~ 117 (525)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776654
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.17 E-value=16 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=17.5
Q ss_pred HHHHHHhhccChhHHHHHHHHHHH
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.++.++.+.|.+.+|+.+..-+..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 467778888888888877765544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.90 E-value=1.3 Score=22.71 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=10.2
Q ss_pred HHHHHHhccCChHHHHHHHH
Q 048766 411 SMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~ 430 (525)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.88 E-value=3.1 Score=40.28 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=52.6
Q ss_pred CCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHH
Q 048766 382 TDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A 457 (525)
.|+ ...|.+++..+.. ..|- ......|.....+.|..-+|..++... .+ ...+.++..++.++....+.+.|
T Consensus 620 ~gn-~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 620 VGN-STFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred cCC-cHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 344 5666666655542 2331 122334555555566666666665543 11 22344555666666666677777
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHH
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
++.|++++++.|+++..-..|..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 777777777766666665554443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.80 E-value=80 Score=37.07 Aligned_cols=306 Identities=12% Similarity=0.050 Sum_probs=157.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc----cCCC--hhhHHHHHHHHHhCCChHHHHHHHh-cCCCCCcchHHHHHHHHHhcCC
Q 048766 144 CLIDMYGKCGSVEDAIGVFGEM----IDKD--IISWNSVIAASARNGNLELAFGFLH-RLPNPDTISYNEVINGIAQFGD 216 (525)
Q Consensus 144 ~l~~~~~~~g~~~~a~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 216 (525)
.+..+-.+++.+.+|...++.- .+.+ ..-+..+...|...+++|....+.. +..+|+ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555667888899999888883 2211 1233444448888888888777776 333333 2334556677899
Q ss_pred hHHHHHHHhcCCC--CC-cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHhccccchHHHHHHHHH
Q 048766 217 IEDAIMILSSMPS--PN-SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFST-MLSGIAGLSALTWGMLIHSC 292 (525)
Q Consensus 217 ~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~ 292 (525)
++.|...|+.+.+ |+ ..+++.++......|+++.+.-..+-.... ..+....++. -+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 9999999999884 43 567888888777888888777755544433 1222222222 2223345555555555443
Q ss_pred HHHhCCCchHHHHHH--HHHHHHcC---CCHHH--HHHHHHhcc---------CC-CHhHHHHHHHHHHhcCChhHHHHH
Q 048766 293 VIKQGLDASIVVASA--LLDMYSKC---GQVEI--ADSMFRSLC---------RK-NLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 293 ~~~~~~~~~~~~~~~--l~~~~~~~---g~~~~--A~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+.+ ...|.. +.....+. ..+.. ..+..+... .. -...|..++....-.. .+.-.+.
T Consensus 1543 --~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~ 1615 (2382)
T KOG0890|consen 1543 --DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEE 1615 (2382)
T ss_pred --ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 111 111111 11111111 11111 111111110 00 1123444444332211 1111111
Q ss_pred HHHHhhCCCCCCCHh------HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-----ChhHHHHHHHHHhccCChHH
Q 048766 356 FEQLKTVRDLQPDSV------TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-----TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 356 ~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 424 (525)
+.. ..|+.. -|..-+..-....+-.+-....-+.+... ...| -..+|...++...++|+++.
T Consensus 1616 l~~------~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~-~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1616 LKK------VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDL-RMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred hhc------cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHH-hccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111 222211 11111111111111011111111111111 1122 25678888888888999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 425 AQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 425 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
|...+-.++...-+..+...+.-..+.|+...|+.++++.++..
T Consensus 1689 A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 98887766433455666777888889999999999999999754
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.41 E-value=47 Score=34.09 Aligned_cols=248 Identities=11% Similarity=-0.048 Sum_probs=129.8
Q ss_pred cCChhHHHHHHHHHhhCC-CCCCHH--HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHH
Q 048766 245 RNRVPEALHLFGEMQSKD-VPMDEY--TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321 (525)
Q Consensus 245 ~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 321 (525)
..+.+.|..++....... ..+... ....+.......+...++...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455688888888764432 222222 22222222222222444555544433222 2344445555566688899998
Q ss_pred HHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 322 DSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 322 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
...+..|.. ....-.-=+.+++...|+.++|...|+++.. .. +|..++.+-. .|.++.-.......-..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~----~~---~fYG~LAa~~-Lg~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ----QR---GFYPMVAAQR-LGEEYPLKIDKAPKPDS 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc----CC---CcHHHHHHHH-cCCCCCCCCCCCCchhh
Confidence 888888862 1222333456776778999999999998743 11 2333332211 12201100000000000
Q ss_pred hhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-C--CChhHH
Q 048766 399 DYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE-G--DSDYVY 475 (525)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p--~~~~~~ 475 (525)
.+..++ -..-+..+...|+...|...+..+....+......+.....+.|.++.++....+....+ . .-|..|
T Consensus 404 --~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~ 479 (644)
T PRK11619 404 --ALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAW 479 (644)
T ss_pred --hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcch
Confidence 001011 122345566789999999988877323455555666666667889999888776554321 0 123345
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHcCCccC
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRERGLRKE 506 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 506 (525)
......+.+.-.++.++-+----++.++.|.
T Consensus 480 ~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 5566666666666766644333345555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.38 E-value=59 Score=35.14 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=81.0
Q ss_pred HHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcc
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 387 (525)
.++.-.+.|.+..|..++.--.+.-...|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|+ |.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~d-Wr 982 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGD-WR 982 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhcc-HH
Confidence 333344556666665555433333334555566666677778888877776544 2255667777777 88
Q ss_pred hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
+|..+..++.. +-.--..+-..|+..+...+++-+|.++..+...+|... +..+++...+++|++......
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhcc
Confidence 88888776643 111112233567777778888888888888764333321 222333445566655554443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.15 E-value=48 Score=33.91 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=12.5
Q ss_pred HhhccChhHHHHHHHHHHHcCCcc
Q 048766 482 YTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
+.+.|+|++|++.+++ .++-|
T Consensus 515 ~~~~g~~~~AL~~i~~---L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEK---LDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHH---TT-S-
T ss_pred HHHcCCHHHHHHHHHh---CCCCC
Confidence 4678899999776654 44555
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.91 E-value=8.4 Score=27.56 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=36.7
Q ss_pred HHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 424 RAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 424 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
++.+-++.+ ..-|++.+..+.+++|.+.+|+..|+++++-+...-.++...|..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 444444443 5678888888888888888888888888887764433244444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.89 E-value=11 Score=31.34 Aligned_cols=76 Identities=11% Similarity=-0.002 Sum_probs=49.3
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh------CCCCchhHHHHHHHHHhcCC
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL------GFGSYGVVWRALLSASGACS 452 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~l~~~~~~~~ 452 (525)
..+.|+ +.|.+.|-.+... +.--++.....|+..|. ..+.++++.++.+. +..+++..+..|+..+.+.|
T Consensus 117 Wsr~~d--~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD--QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc--HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 344454 6777777777654 44445666666665554 56777777777664 22567777788888888888
Q ss_pred ChHHHH
Q 048766 453 DLDVAR 458 (525)
Q Consensus 453 ~~~~A~ 458 (525)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 777663
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.63 E-value=50 Score=33.75 Aligned_cols=168 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred HHHHHhcCCHHHHHHHHhhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 048766 146 IDMYGKCGSVEDAIGVFGEMIDK-----DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220 (525)
Q Consensus 146 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 220 (525)
++.+.+.+.+++|+.+.+..... -...+..++..+.-.|++++|-...-.|-..+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 56667778888888887766442 1235667777788888888887777777666666666666666666655544
Q ss_pred HHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC
Q 048766 221 IMILSSMPS-PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD 299 (525)
Q Consensus 221 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 299 (525)
..++-.-.. -+...|..++..+.. .+...-.++.++. +++...-..++++. ..++ . .. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W-----p~~Lys~l~iisa~--~~q~----------~-q~-S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW-----PGHLYSVLTIISAT--EPQI----------K-QN-S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhC-----ChhhhhhhHHHhhc--chHH----------H-hh-c
Confidence 443322221 334456666666655 2222222222211 22221111111111 0000 0 01 1
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLCRKNL 333 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 333 (525)
-+......|+..|...+++.+|.+++-.+..++.
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1122223377777788888888877777765543
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.48 E-value=22 Score=36.01 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=56.1
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
|...+..+.|.++|++..+ +.|+..+=..+...+...|..++...++-.- | ..|-..+++.|..
T Consensus 297 ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~Fens~Elq~I-----g--------mkLn~LlgrKG~l 360 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHFENSLELQQI-----G--------MKLNSLLGRKGAL 360 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhccchHHHHHH-----H--------HHHHHHhhccchH
Confidence 3344555667777777776 6665433222222222223212222222110 1 1233455677776
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
++-.+.|+-. .++.+-.-.+|+.+|++..+.+.+++|..
T Consensus 361 eklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 361 EKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 6666665432 23444455789999999999999999744
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=84.47 E-value=29 Score=30.83 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=49.7
Q ss_pred ccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHH----HHhcCCCCCHhhHHHHHHHHcccCChH-HHH
Q 048766 50 KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVE----LERSEIYADAYSFTSALAACGQLGSLQ-LGM 124 (525)
Q Consensus 50 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~ 124 (525)
+++++++|++++-. =...+.+.|+...|.++..- +.+.++++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34666777665432 23345566776665554433 334566666666566665554432211 222
Q ss_pred HHHHHHHH---cccC--CCcchhhHHHHHHHhcCCHHHHHHHHhhc
Q 048766 125 AIHSKIVK---YSLE--RGVVIANCLIDMYGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 125 ~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (525)
++.+.+++ .|-. -++.....+...|.+.|++.+|+.-|-.-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 33333332 2211 24556667777777777777777665443
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=65 Score=34.85 Aligned_cols=269 Identities=13% Similarity=0.028 Sum_probs=145.9
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 048766 191 GFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTF 270 (525)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 270 (525)
.+...+.++++.+-...+..+.+.+..+....+...+.+++...-...+.++.+.+........+..+... +|...-
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR 701 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVR 701 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHH
Confidence 33344456666666666666666665443333444444444444444444444332221122333333332 455555
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChh
Q 048766 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLT 350 (525)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (525)
...+.++...+..+ ...+.. ..+ .++..+-...+.++.+.+..+ .+...+..++...-...+.++...+..+
T Consensus 702 ~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 55555554433211 111222 221 455555566666666655443 2334445667766666777777766544
Q ss_pred H-HHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 048766 351 K-VIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429 (525)
Q Consensus 351 ~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (525)
. +...+..+.. .+|...-...+.++...+. .+.+...+..+.+ +++..+-...+.++.+.+.. ++...+
T Consensus 774 ~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~-~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L 843 (897)
T PRK13800 774 APAGDAVRALTG----DPDPLVRAAALAALAELGC-PPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPAL 843 (897)
T ss_pred chhHHHHHHHhc----CCCHHHHHHHHHHHHhcCC-cchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHH
Confidence 3 3455555554 5567777778888888876 5444444444443 35556666677777777764 455555
Q ss_pred HHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 430 RELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
..+-..|+..+-...+.++.+.+....+...+..+++ ++ ++.+-.....++
T Consensus 844 ~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~-D~-d~~Vr~~A~~aL 894 (897)
T PRK13800 844 VEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT-DS-DADVRAYARRAL 894 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh-CC-CHHHHHHHHHHH
Confidence 5553466777777777777765445667778877776 33 455544444443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.36 E-value=2.1 Score=22.44 Aligned_cols=29 Identities=24% Similarity=0.135 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 473 YVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.++..++.++...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887754
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.32 E-value=19 Score=32.59 Aligned_cols=92 Identities=11% Similarity=-0.092 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh----CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
..|.-=++-|.+..++..|...|.+- ...|+ ...|..-..+....|++..|+.-..+++..+|.+.-+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444566788899999999999874 22333 4456556666677899999999999999999999999999999
Q ss_pred HHhhccChhHHHHHHHHH
Q 048766 481 LYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~ 498 (525)
++....++++|...-++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999877776655443
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=83.39 E-value=8.6 Score=30.14 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 422 VWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 422 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
.+.|.++.+-|+ ...............|++.-|.++.+.++..+|+|..+....+.+|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 345666666664 233344455566778999999999999999999999999999999988775443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.36 E-value=2.2 Score=35.94 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=33.6
Q ss_pred HhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 416 MGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
..+.|+.+.|.+++++. ...|. ...|..+....-+.|+++.|.+.+++.++++|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556666666666654 32333 44565666666666666666666666666666543
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=82.97 E-value=4.7 Score=29.06 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=38.0
Q ss_pred hcCCChHHHHHHHHHHHhhcCC----C-----hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 449 GACSDLDVARISAAEVIKLEGD----S-----DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+.||+.+|.+.+.+.+..... . ..+...++.++...|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678888888888777764311 1 23455677888889999999999888765
|
|
| >cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH | Back alignment and domain information |
|---|
Probab=82.79 E-value=14 Score=30.13 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=24.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 492 (525)
+..|.+.|.+++|.+++++..+ +|++...-..|+.+-.....+...+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~l 164 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVL 164 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHH
Confidence 4456666666666666666666 5555554444444444444444333
|
Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=8.5 Score=34.17 Aligned_cols=68 Identities=10% Similarity=-0.083 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.+.+-.+|.+.++++.|+.+.+.+ ...|+ +.-+.--+-.|.+.|.+..|..-++..++.-|++|.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 345667888999999999999987 44444 556777788899999999999999999999998877644
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.62 E-value=27 Score=29.04 Aligned_cols=91 Identities=9% Similarity=-0.008 Sum_probs=67.7
Q ss_pred HHHHHHhccCChHHHHHHHHHh-CCCCch----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL-GFGSYG----VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
.+...+..+|++++|...++.. ....|. ..-..|.......|.+|+|+..++...+.+- .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 4456788899999999999875 322221 2233456677889999999999887655432 344566788999999
Q ss_pred cChhHHHHHHHHHHHcC
Q 048766 486 GNWDVASVMRNFMRERG 502 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~ 502 (525)
|+.++|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998887
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.39 E-value=12 Score=27.07 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=34.2
Q ss_pred HHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 424 RAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 424 ~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
+..+-++.+ ..-|++.+..+.+.+|.+.+|+..|+++++-+...-.+....|..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 344444443 5678888888888899889999999998887776544333355444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.22 E-value=4.9 Score=27.46 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=33.9
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHHH---HHHHHhhccChhHHHHHH
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYVM---LCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~~ 495 (525)
..++.++|+..++++++..++.+.-|.. |..+|...|++.+.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999998887766655554 456677778888777663
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.66 E-value=17 Score=35.70 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=65.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCC
Q 048766 40 VSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS 119 (525)
Q Consensus 40 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 119 (525)
..+.+...+-+.|-.++|+++-.. |+. -.....+.|+.+.|.++..+.. +..-|..|.++....++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhccc
Confidence 445666777777777777654321 111 1222334566666666554432 34456666666666666
Q ss_pred hHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC
Q 048766 120 LQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196 (525)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 196 (525)
+..|.+.|...... ..|+-++...|+-+....+-....+.. ..|.-..+|...|+++++.+++.+-
T Consensus 682 l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g--~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 682 LPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG--KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc--ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 66666666554332 233444444455443333332222211 1122233455566666666666554
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.57 E-value=41 Score=30.46 Aligned_cols=78 Identities=17% Similarity=-0.048 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHH----hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc-------------
Q 048766 424 RAQRMIRELGFGSYGVVWRALLSAS----GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG------------- 486 (525)
Q Consensus 424 ~A~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 486 (525)
.|...+.++-...+......+...| .-..++.+|...|.++-+.+. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 5566665551122333333333333 223477777777777777665 45555555 444444
Q ss_pred --ChhHHHHHHHHHHHcCCc
Q 048766 487 --NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 487 --~~~~A~~~~~~~~~~~~~ 504 (525)
+...|...+......+..
T Consensus 250 ~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 250 EEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCh
Confidence 667777777777666654
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.22 E-value=9.1 Score=37.29 Aligned_cols=91 Identities=12% Similarity=-0.041 Sum_probs=74.5
Q ss_pred HHHHhc-cCChHHHHHHHHHh-CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 413 IRLMGQ-KGEVWRAQRMIREL-GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 413 ~~~~~~-~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
...|.| .|+...|...+..+ ...|. ......|.....+.|-.-.|-.++.+.+.+....|..+..+++++....++
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 345554 69999999999886 33333 345666777788888888999999999999877889999999999999999
Q ss_pred hHHHHHHHHHHHcCC
Q 048766 489 DVASVMRNFMRERGL 503 (525)
Q Consensus 489 ~~A~~~~~~~~~~~~ 503 (525)
+.|++.|+...+...
T Consensus 693 ~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 693 SGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999998887654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=80.81 E-value=77 Score=33.13 Aligned_cols=217 Identities=16% Similarity=0.071 Sum_probs=114.8
Q ss_pred hccccchHHHHHHHHHHHHhCCCchH-------HHHHHH-HHHHHcCCCHHHHHHHHHhcc--------CCCHhHHHHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQGLDASI-------VVASAL-LDMYSKCGQVEIADSMFRSLC--------RKNLVTWNAMI 340 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l-~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~ 340 (525)
.....++.+|..+..++...-..|+. ..++++ .......|+++.|+++.+... ......+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34667888888888887655323221 112222 122345788888888776654 23455677778
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHH---HHH--HHHHcCCCC-CcchHHHHHHHhhhhhCCC-C----ChhHH
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTF---LNV--LAACSHTDI-PFDKVSEYFESMTKDYGIK-P----TVEHC 409 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~l--~~~~~~~~~-~~~~a~~~~~~~~~~~~~~-~----~~~~~ 409 (525)
.+..-.|++++|..+.+...+.. -.-+...+ ..+ ...+...|. ...+....+......+... | -..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a-~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMA-RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 88888999999998887765532 12222222 222 223444553 0223333333333221111 1 12334
Q ss_pred HHHHHHHhccCChHHHHHHHHH----h-CCCCch--hH--HHHHHHHHhcCCChHHHHHHHHHHHhhcCCC-hhH-HH--
Q 048766 410 CSMIRLMGQKGEVWRAQRMIRE----L-GFGSYG--VV--WRALLSASGACSDLDVARISAAEVIKLEGDS-DYV-YV-- 476 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~----~-~~~~~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~-~~-- 476 (525)
..+..++.+ .+.+..-... - ...|.. .. +..++......|+.++|...+.++..+.-.+ +.+ |.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455544 3333222222 1 112221 11 2256677788999999999999988764211 111 21
Q ss_pred -H--HHHHHhhccChhHHHHHHHH
Q 048766 477 -M--LCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 477 -~--l~~~~~~~g~~~~A~~~~~~ 497 (525)
. -......+|+.++|...+.+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 22234557888888877665
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.75 E-value=3.4 Score=36.50 Aligned_cols=59 Identities=7% Similarity=0.081 Sum_probs=31.3
Q ss_pred ccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 418 QKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
+.|+.++|..+|+.. ...|+ +..+..++...-..++.-+|-.+|-+++...|.|..++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 556666666666653 33333 333333444444445566666666666666665555544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.20 E-value=60 Score=31.52 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC---CCHhHHHHHH
Q 048766 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR---KNLVTWNAMI 340 (525)
Q Consensus 264 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 340 (525)
+.|.....+++..+.......-++.+..++...| .+...+..++.+|... ..+.-..+|+++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4466667777777887777778888888887765 3455667777777777 55666667775542 2333334444
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCC------HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPD------SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.-|-+ ++.+.+...|.++... +-|. ...|.-+... -|++.+....+..++++..|..--...+..+-.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh---ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 44444 6777777777776654 3331 1223333321 122367777777777766555555555666667
Q ss_pred HHhccCChHHHHHHHHHh
Q 048766 415 LMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~ 432 (525)
-|....++.+|++++..+
T Consensus 214 ~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 214 KYSENENWTEAIRILKHI 231 (711)
T ss_pred HhccccCHHHHHHHHHHH
Confidence 777888888888888865
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=80.10 E-value=42 Score=30.54 Aligned_cols=121 Identities=11% Similarity=0.103 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC------CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCC
Q 048766 348 DLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH------TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE 421 (525)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 421 (525)
-++++..++++....+ .|.+......|.++.. .-+ |.....+|+.+. .+.|++.+-..-.-+..+..-
T Consensus 271 lI~eg~all~rA~~~~--~pGPYqlqAAIaa~HA~a~~aedtD-W~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~G 344 (415)
T COG4941 271 LIDEGLALLDRALASR--RPGPYQLQAAIAALHARARRAEDTD-WPAIDALYDALE---QAAPSPVVTLNRAVALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhhcccCCCC-hHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhh
Confidence 3578888899888877 5888777777776642 233 888888888887 446665433222334444555
Q ss_pred hHHHHHHHHHhCCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 422 VWRAQRMIRELGFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 422 ~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
++.++.+.+-++..|. ...+..-...+.+.|+.++|...|++++.+.++..+.
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 6777788877743332 2333444566788999999999999999998854443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.06 E-value=38 Score=29.19 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=67.3
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHH-HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccC
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTF-LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKG 420 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 420 (525)
|....++..|+.-|.+... +.|+..+| ..=+..+.+..+ ++.+..=-.... .+.|+ +.....+...+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~-~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKH-WEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhc
Confidence 4455678888888888887 77876444 444455555666 777766555554 45565 333445566666777
Q ss_pred ChHHHHHHHHHh-------CCCCchhHHHHHHHHHhcCCChHHHHHH
Q 048766 421 EVWRAQRMIREL-------GFGSYGVVWRALLSASGACSDLDVARIS 460 (525)
Q Consensus 421 ~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 460 (525)
.+++|+..+.+. ++.+....+..|..+-...=...+..++
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 788888887775 4444555666666554333333444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.0 bits (146), Expect = 7e-10
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 307 ALLDMYSKCGQVEIADSMFRSLCRK-------NLVTWNAMITGYARNGDLTKVIELFEQL 359
A Q+ +A + + L +NA++ G+AR G +++ + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 360 KTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419
K L PD +++ L D + E M+++ + + +
Sbjct: 192 KD-AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS--EEDR 248
Query: 420 GEVWRAQRMIRE 431
V +A ++
Sbjct: 249 ATVLKAVHKVKP 260
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 9e-07
Identities = 7/88 (7%), Positives = 26/88 (29%), Gaps = 7/88 (7%)
Query: 198 NPDTISYNEVINGIAQFGDIEDAIMILSSM-------PSPNSSSWNSILTGYVNRNRVPE 250
+ + A +L +N+++ G+ + E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 251 ALHLFGEMQSKDVPMDEYTFSTMLSGIA 278
+++ ++ + D +++ L +
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 1e-05
Identities = 13/113 (11%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
Query: 54 LADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAA 113
L H + ++ +N+++ G+ + G +++ + + ++ + + D S+ +AL
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 114 CGQLG-SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165
G+ ++ + L+ + L+ + ++ V
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 1e-05
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 12/99 (12%)
Query: 143 NCLIDMYGKCGSVEDAIGVFGEMIDK-------DIISWNSVIAASARNGNLELAFGFLHR 195
+ A + + + +N+V+ AR G + L
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 196 LP----NPDTISYNEVINGIAQFGDIEDAI-MILSSMPS 229
+ PD +SY + + + I L M
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 69/440 (15%), Positives = 129/440 (29%), Gaps = 103/440 (23%)
Query: 5 VLFHLLRASSDLGWDTYCQQLHCY--------ILKSGFLSNVFVS-TALMGFYRKINSL- 54
+L D + C IL + ++ +S A+ G R +L
Sbjct: 21 ILSVFE--------DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 55 ---ADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSAL 111
+ + FVE + L+S + + +R +Y D F
Sbjct: 73 SKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-- 128
Query: 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCG------SVEDAIGVFGEM 165
+ LQ + + +++ + V+I + G G V + V +M
Sbjct: 129 ---YNVSRLQPYLKLRQALLELRPAKNVLIDG----VLG-SGKTWVALDVCLSYKVQCKM 180
Query: 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI-MIL 224
K I W ++ ++ LE+ L+++ T + N + I+ + +L
Sbjct: 181 DFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 225 SSMPSPNS-----SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279
S P N + N +A + F + K + +T +
Sbjct: 239 KSKPYENCLLVLLNVQN------------AKAWNAF-NLSCKIL------LTTRFKQVT- 278
Query: 280 LSALTWGMLIHSCVIK--QGLDASIVVASALLDMYSKCGQVEIAD-------------SM 324
L+ H + L + + K D S+
Sbjct: 279 -DFLSAATTTHISLDHHSMTLTPD-----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 325 FRSLCRKNLVTWNAMITGYAR-NGD-LTKVIELF-EQLKT--VRDLQPDSVTFLNVLAAC 379
R L TW+ + N D LT +IE L+ R + F
Sbjct: 333 IAESIRDGLATWD----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP----- 383
Query: 380 SHTDIPFDKVSEYFESMTKD 399
IP +S + + K
Sbjct: 384 -SAHIPTILLSLIWFDVIKS 402
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.28 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.28 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.25 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.22 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.19 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.19 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.17 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.13 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.11 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.09 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.09 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.07 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.04 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.03 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.0 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.96 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.93 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.93 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.91 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.9 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.9 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.87 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.87 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.84 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.83 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.83 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.82 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.81 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.8 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.79 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.77 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.76 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.75 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.73 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.72 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.71 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.68 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.67 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.66 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.66 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.62 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.57 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.57 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.55 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.54 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.47 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.47 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.46 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.45 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.41 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.4 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.38 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.36 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.35 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.29 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.26 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.16 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.16 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.11 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.96 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.92 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.91 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.8 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.76 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.5 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.49 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.44 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.43 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.29 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.12 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.64 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.46 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.46 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.41 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.26 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.09 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.92 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.89 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 95.66 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.6 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.59 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.53 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.11 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.69 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.65 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.76 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.4 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.31 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.14 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.1 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 92.61 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 92.58 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.24 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 91.0 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.75 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.73 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.45 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.29 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.24 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 88.5 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.33 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 87.08 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.84 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.94 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.88 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.76 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.85 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.72 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 81.16 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 80.17 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=342.05 Aligned_cols=446 Identities=12% Similarity=0.014 Sum_probs=377.8
Q ss_pred HHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHH
Q 048766 48 YRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIH 127 (525)
Q Consensus 48 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 127 (525)
+.+.|....+...+..++.+++..|+.++..+.+.|++++|..+|++|.+ ..|+..++..++.+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44567777778888888778888999999999999999999999999985 4678888999999999999999999999
Q ss_pred HHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC-------------------ChhhHHHHHHHHHhCCChHH
Q 048766 128 SKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK-------------------DIISWNSVIAASARNGNLEL 188 (525)
Q Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~ 188 (525)
+.+.. .+++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 98765 3678889999999999999999999999965443 36789999999999999999
Q ss_pred HHHHHhcC--CCCC-cchHHH--------------------------------------HHHHHHhcCChHHHHHHHhcC
Q 048766 189 AFGFLHRL--PNPD-TISYNE--------------------------------------VINGIAQFGDIEDAIMILSSM 227 (525)
Q Consensus 189 a~~~~~~~--~~~~-~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~ 227 (525)
|.+.|+++ ..|+ ...+.. ++..|.+.|++++|.++|+++
T Consensus 219 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 219 AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 99999998 2332 223222 244566789999999999999
Q ss_pred CC--CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHH
Q 048766 228 PS--PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVA 305 (525)
Q Consensus 228 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 305 (525)
.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..++
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 87 888999999999999999999999999999765 4477889999999999999999999999999765 6678899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCC
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT 382 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 382 (525)
..++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHc
Confidence 999999999999999999999885 4567899999999999999999999999999843 34788999999999999
Q ss_pred CCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc--hhHHHHHHHHHhcCCC
Q 048766 383 DIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY--GVVWRALLSASGACSD 453 (525)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~ 453 (525)
|+ +++|.++|+++.+. .+.++.+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 455 g~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 455 GN-ILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp TC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred CC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99 99999999999864 2446889999999999999999999999987 44677 6789999999999999
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+++|++.++++++.+|+++.+|..++.+|.+.|++++|.++++++.+..+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999987653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=339.81 Aligned_cols=475 Identities=9% Similarity=-0.041 Sum_probs=395.3
Q ss_pred ccchHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCCcccHHHHHHHH
Q 048766 2 NEYVLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIP--QPSVVSWNSLISGY 79 (525)
Q Consensus 2 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~~ 79 (525)
++..|+.++..+.+.|++++|..+|+.+.+. .|+..++..++..|.+.|++++|+.+|+.+. .++..+++.++.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 5567888899999999999999999988855 4566788888999999999999999998884 47888889999999
Q ss_pred HhcCChHHHHHHHHHHHh-c--------------CCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhH
Q 048766 80 VQSGKYRKALNLFVELER-S--------------EIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANC 144 (525)
Q Consensus 80 ~~~~~~~~A~~~~~~m~~-~--------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (525)
.+.|++++|.++|+++.. . +.+++..+|+.++.++.+.|++++|.+.|+++.+.+ +.+...+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 999999999998884321 1 223357788888889999999999999999888865 334555565
Q ss_pred HHHHHHhcCCHHHHHH--H-HhhccCC----ChhhHHHHHHHHHhCCChHHHHHHHhcCCC--CCcchHHHHHHHHHhcC
Q 048766 145 LIDMYGKCGSVEDAIG--V-FGEMIDK----DIISWNSVIAASARNGNLELAFGFLHRLPN--PDTISYNEVINGIAQFG 215 (525)
Q Consensus 145 l~~~~~~~g~~~~a~~--~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~ 215 (525)
+...+...+..+.+.. + +..+... ....|+.++..|.+.|++++|.++|+++.. ++..+++.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 6555443333222211 1 2222222 233456667788899999999999999955 78899999999999999
Q ss_pred ChHHHHHHHhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHH
Q 048766 216 DIEDAIMILSSMP---SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSC 292 (525)
Q Consensus 216 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 292 (525)
++++|..+|+++. ..+..+|..++.++.+.|++++|..+++++... .+.+..++..++..|.+.|++++|..+|+.
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999886 356778999999999999999999999999865 356788999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH
Q 048766 293 VIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS 369 (525)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 369 (525)
+.+.. +.+..++..++.+|.+.|++++|.++|+++. +.+..+|..++.+|.+.|++++|+++|+++.+.. +.+.
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 475 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDP 475 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh
Confidence 99875 5578899999999999999999999999886 4577899999999999999999999999999843 3468
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhh---CCCCC--hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDY---GIKPT--VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWR 442 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~ 442 (525)
.+|..++..+.+.|+ +++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ .. +.+..+|.
T Consensus 476 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 476 LLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 899999999999999 999999999997643 44676 789999999999999999999999987 33 34688999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
.++..|.+.|++++|.+.++++++.+|+++.++..++.+|..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-29 Score=234.91 Aligned_cols=371 Identities=13% Similarity=0.094 Sum_probs=282.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCH
Q 048766 76 ISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSV 155 (525)
Q Consensus 76 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 155 (525)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 455667788888888888877642 2334555566666777788888888887777654 45667788888888888888
Q ss_pred HHHHHHHhhccC--C-ChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC
Q 048766 156 EDAIGVFGEMID--K-DIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP--SP 230 (525)
Q Consensus 156 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 230 (525)
++|...|+++.+ | +..+|..+..++.+.|++++|...|+++ . .|
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------l~~~p 132 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA-------------------------------LQYNP 132 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-------------------------------HHHCT
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HHhCC
Confidence 888888877743 2 2334555555555555555555555443 2 12
Q ss_pred -CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHH
Q 048766 231 -NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309 (525)
Q Consensus 231 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 309 (525)
+...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++.+.+ +.+...+..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 23345566667777777777777777777652 3356677777777788888888888888877765 45567788888
Q ss_pred HHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCC
Q 048766 310 DMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIP 385 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 385 (525)
..+...|++++|...+++.. +.+..++..++..+...|++++|++.|+++.+ ..| +..++..+...+...|+
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~- 286 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGS- 286 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSC-
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCC-
Confidence 88888999999988888775 34577888899999999999999999999988 555 46788888899999998
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
+++|.+.++++.+. .+.+...+..++..+.+.|++++|...++++ ...|+ ...+..++..+.+.|++++|+..+++
T Consensus 287 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999864 3456788999999999999999999999987 44444 67888899999999999999999999
Q ss_pred HHhhcCCChhHHHHHHHHHhhccC
Q 048766 464 VIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 464 ~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
+++..|+++.++..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-28 Score=228.44 Aligned_cols=352 Identities=12% Similarity=0.073 Sum_probs=279.7
Q ss_pred HHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHH
Q 048766 113 ACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGF 192 (525)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 192 (525)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------------------------ 62 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------------------------ 62 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------
Confidence 3444555555555555555442 223344444445555555555555555444221
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CC-CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 048766 193 LHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMP--SP-NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT 269 (525)
Q Consensus 193 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 269 (525)
.+.+..++..+...+.+.|++++|...|+++. .| +..+|..+..++.+.|++++|.+.|+++.+.+ +.+...
T Consensus 63 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 137 (388)
T 1w3b_A 63 ----NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCV 137 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHH
T ss_pred ----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 22344556666666666666666666666654 23 34568899999999999999999999998763 334556
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhc
Q 048766 270 FSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARN 346 (525)
Q Consensus 270 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 346 (525)
+..+...+...|++++|...+..+.+.. +.+..++..+...+.+.|++++|...|+++. +.+...|..+...+...
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 7778888899999999999999999876 5567889999999999999999999999986 44567899999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 424 (525)
|++++|+..+++..+ ..| +..++..+...+...|+ +++|.+.++++.+. .| ++..+..++..|.+.|++++
T Consensus 217 ~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 217 RIFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp TCTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHH
T ss_pred CCHHHHHHHHHHHHh---hCcCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 566 47888899999999999 99999999999853 44 57789999999999999999
Q ss_pred HHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 425 AQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 425 A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
|.+.++++ ..+.+..++..++..+...|++++|+..++++++..|+++.++..++.++.+.|++++|...++++.+..
T Consensus 290 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999987 3345678899999999999999999999999999999999999999999999999999999999998754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=230.38 Aligned_cols=186 Identities=14% Similarity=0.137 Sum_probs=143.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCC---------hHHHHHHHHHHHHcccCCCcch
Q 048766 71 SWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS---------LQLGMAIHSKIVKYSLERGVVI 141 (525)
Q Consensus 71 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 141 (525)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4667777778888888888888888888888888888888888776543 5677888888888888888888
Q ss_pred hhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 048766 142 ANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAI 221 (525)
Q Consensus 142 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 221 (525)
|++||.+|++.|++++|.++|++|.+.+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~--------------------------------------------------- 136 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGI--------------------------------------------------- 136 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTC---------------------------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------------------------------
Confidence 88888888888888888888877755433
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCch
Q 048766 222 MILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS 301 (525)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 301 (525)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|.+++++|.+.+..|+
T Consensus 137 -------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 137 -------QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp -------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred -------CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 3666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHc
Q 048766 302 IVVASALLDMYSK 314 (525)
Q Consensus 302 ~~~~~~l~~~~~~ 314 (525)
..+|+.++..|..
T Consensus 210 ~~T~~~l~~~F~s 222 (501)
T 4g26_A 210 KSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-25 Score=219.54 Aligned_cols=264 Identities=9% Similarity=-0.070 Sum_probs=218.6
Q ss_pred ccHHHHHHHHHh---cCChhHHHHHHHHHhh-----CCCC--------CCHHHHHHHHHHhccccchHHHHHHHHHHHHh
Q 048766 233 SSWNSILTGYVN---RNRVPEALHLFGEMQS-----KDVP--------MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ 296 (525)
Q Consensus 233 ~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 296 (525)
..+......+.. .|++++|..+|+++.. .... .+..++..+...+...|++++|...++.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 344444555554 8899999999999887 3112 23456777888889999999999999999888
Q ss_pred CCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHH
Q 048766 297 GLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTF 372 (525)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~ 372 (525)
... ...+..+..++...|++++|...++.+. +.+...+..+...+...|++++|+..++++.+ ..| +...+
T Consensus 267 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~ 341 (514)
T 2gw1_A 267 FPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE---LDPENIFPY 341 (514)
T ss_dssp CCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH---TCSSCSHHH
T ss_pred Ccc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hChhhHHHH
Confidence 744 7888889999999999999999999886 34567888899999999999999999999988 444 46778
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc----hhHHHHH
Q 048766 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY----GVVWRAL 444 (525)
Q Consensus 373 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l 444 (525)
..+...+...|+ +++|..+++.+.+. .+.+...+..++..|.+.|++++|...++++ +..+. ...+..+
T Consensus 342 ~~l~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 342 IQLACLAYRENK-FDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHTTTTTC-HHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 888889999999 99999999998864 2345778889999999999999999999886 22222 3378888
Q ss_pred HHHHhc---CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 445 LSASGA---CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 445 ~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+..+.. .|++++|+..++++++..|+++.++..++.++...|++++|...++++.+..+.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 999999 999999999999999999999999999999999999999999999999887653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=221.68 Aligned_cols=423 Identities=11% Similarity=0.036 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 048766 38 VFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAAC 114 (525)
Q Consensus 38 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 114 (525)
...+..+...+.+.|++++|++.|+++.. .++..|..+..++...|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 34455566666666666666666665543 344556666666666666666666666666543 23455566666666
Q ss_pred cccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCC------ChhhHHHHHHHHHhCCChHH
Q 048766 115 GQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDK------DIISWNSVIAASARNGNLEL 188 (525)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 188 (525)
...|++++|...++ .... .|+ .....+..+...+....|...++.+... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 66666666666664 2221 111 1111223333444455566666655432 11122333444555555555
Q ss_pred HHHHHhcCCCCCcc---hHHHHHHHHHh--------cCChHHHHHHHhcCCC--CC--------cccHHHHHHHHHhcCC
Q 048766 189 AFGFLHRLPNPDTI---SYNEVINGIAQ--------FGDIEDAIMILSSMPS--PN--------SSSWNSILTGYVNRNR 247 (525)
Q Consensus 189 a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~ 247 (525)
+...+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 55555555333322 22222222111 1244555555554442 11 1123344444555555
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 048766 248 VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRS 327 (525)
Q Consensus 248 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 327 (525)
+++|...|+++... .|+...+..+...+...|++++|...+..+.+.. +.+..++..+..++...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55555555555543 2334445555555555555555555555555443 23344444555555555555555555554
Q ss_pred cc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC
Q 048766 328 LC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK 403 (525)
Q Consensus 328 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 403 (525)
+. +.+...|..+...+...|++++|+..++++.+ ..| +...+..+...+...|+ +++|.+.++++.+...-.
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL---KFPTLPEVPTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcc
Confidence 43 22334444455555555555555555555544 222 23344444444555554 555555555544321101
Q ss_pred CC----hhHHHHHHHHHhcc----------CChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 404 PT----VEHCCSMIRLMGQK----------GEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 404 ~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
++ ...+..++..|.+. |++++|...++++ . .+.+...+..++..+...|++++|.+.+++++++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 10 11122223334444 5555555555443 1 1122344444444555555555555555555555
Q ss_pred cCCChh
Q 048766 468 EGDSDY 473 (525)
Q Consensus 468 ~p~~~~ 473 (525)
.|+++.
T Consensus 492 ~~~~~~ 497 (537)
T 3fp2_A 492 ARTMDE 497 (537)
T ss_dssp C--CHH
T ss_pred CCCcHH
Confidence 544433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=225.27 Aligned_cols=184 Identities=16% Similarity=0.202 Sum_probs=173.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc---------chHHHHHHHHHHHHhCCCchHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS---------ALTWGMLIHSCVIKQGLDASIV 303 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 303 (525)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+ .++.|..+|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 4788999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLC----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC 379 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (525)
+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.| +.||..||+.++.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-VVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Confidence 99999999999999999999999996 6899999999999999999999999999999999 999999999999999
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK 419 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (525)
++.|+ .++|.+++++|.+. +..|+..||+.++..|...
T Consensus 186 ~~~g~-~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKN-ADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTC-HHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCC-HHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999 99999999999887 9999999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-25 Score=216.34 Aligned_cols=443 Identities=12% Similarity=-0.044 Sum_probs=286.3
Q ss_pred hHHHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHh
Q 048766 5 VLFHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQ 81 (525)
Q Consensus 5 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~ 81 (525)
.+......+.+.|++++|...|..+++.+ |++..+..+...|.+.|++++|++.|+++.+ .+...|..+..++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 44555566666677777777777776664 4666666666667667777777766665543 234456666666666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH---HHHHhcCCHHHH
Q 048766 82 SGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI---DMYGKCGSVEDA 158 (525)
Q Consensus 82 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a 158 (525)
.|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-. ...........+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 667777776666666643 2333333334333333222222222222222111111111000000 000000001111
Q ss_pred HHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCC-CCCcchHHHHHHHHHh---cCChHHHHHHHhcCCC-----
Q 048766 159 IGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP-NPDTISYNEVINGIAQ---FGDIEDAIMILSSMPS----- 229 (525)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----- 229 (525)
...+..... .... ..+. +.+...+......+.. .|++++|...|+++.+
T Consensus 165 ~~~~~~~~~-------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 165 ASFFGIFKP-------------------ELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp HHHHTTSCC-------------------CCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCH-------------------HHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 111111100 0000 0000 1112223333333332 5566666665554432
Q ss_pred ------------CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 048766 230 ------------PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG 297 (525)
Q Consensus 230 ------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 297 (525)
.+..++..+...+...|++++|...|+++...+ |+...+..+..++...|++++|...++.+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 123467778888899999999999999988764 337788888888999999999999999988775
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHH
Q 048766 298 LDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFL 373 (525)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 373 (525)
+.+..++..+..++...|++++|...++.+. +.+...+..+...+...|++++|+..++++.+. .| +...+.
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 376 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPN 376 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHH
Confidence 4567788889999999999999999999875 446678888999999999999999999999884 44 567788
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhc---cCChHHHHHHHHHh-CC-CCchhHHHHH
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQ---KGEVWRAQRMIREL-GF-GSYGVVWRAL 444 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~~~~~~~~~l 444 (525)
.+...+...|+ +++|.+.++++.+...-.++ ...+..++..|.. .|++++|...++++ .. +.+...+..+
T Consensus 377 ~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKND-FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 88899999999 99999999998765322232 3488999999999 99999999999987 22 3456788889
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
+..+...|++++|...++++++..|+++..+..+.
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999998888877663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=204.30 Aligned_cols=331 Identities=13% Similarity=0.052 Sum_probs=239.5
Q ss_pred CCcchhhHHHHHHHhcCCHHHHHHHHhhccC---CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 048766 137 RGVVIANCLIDMYGKCGSVEDAIGVFGEMID---KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQ 213 (525)
Q Consensus 137 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 213 (525)
.+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 3455666666677777777777777766643 24445555555555555555555555554100
Q ss_pred cCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHH------------HHHh
Q 048766 214 FGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE----YTFSTM------------LSGI 277 (525)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l------------~~~~ 277 (525)
...+...+..++.+|.+.|++++|...|+++... .|+. ..+..+ ...+
T Consensus 90 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 90 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123345556666666666666666666666654 2332 333333 3346
Q ss_pred ccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHH
Q 048766 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|.+.|+.+. +.+..+|..++..|...|++++|+.
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77888888888888888765 5567788888899999999999999998875 4577889999999999999999999
Q ss_pred HHHHHhhCCCCCCCH-hHHHHH------------HHHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHH
Q 048766 355 LFEQLKTVRDLQPDS-VTFLNV------------LAACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLM 416 (525)
Q Consensus 355 ~~~~~~~~~~~~p~~-~~~~~l------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 416 (525)
.|+++.+ ..|+. ..+..+ ...+...|+ +++|.++|+++.+. .|+ ...+..++..+
T Consensus 233 ~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 233 EVRECLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 9999987 55653 334333 678888898 99999999999864 454 44788899999
Q ss_pred hccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH------------H
Q 048766 417 GQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL------------Y 482 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~ 482 (525)
.+.|++++|+..++++ ...| +...|..++.+|...|++++|+..++++++..|+++.++..++.+ |
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 9999999999999987 3334 578899999999999999999999999999999999999999844 5
Q ss_pred hhcc-----ChhHHHHHHHH-HHHcCCcc
Q 048766 483 TSHG-----NWDVASVMRNF-MRERGLRK 505 (525)
Q Consensus 483 ~~~g-----~~~~A~~~~~~-~~~~~~~~ 505 (525)
...| +.+++.+.+++ ..+..+..
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 5555 56677888876 44444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=207.78 Aligned_cols=424 Identities=9% Similarity=0.016 Sum_probs=332.3
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 69 VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888899999999999999999999864 4578889999999999999999999999999875 5577889999999
Q ss_pred HHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChHHHHH
Q 048766 149 YGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPN------PDTISYNEVINGIAQFGDIEDAIM 222 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~ 222 (525)
+...|++++|...|+.+ ..+.......+..+...+...+|...++++.. +........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999744 33333333344555666667888888888722 122223455666777888888888
Q ss_pred HHhcCCCCCcc---cHHHHHHHHHh--------cCChhHHHHHHHHHhhCCCCCCH-------HHHHHHHHHhccccchH
Q 048766 223 ILSSMPSPNSS---SWNSILTGYVN--------RNRVPEALHLFGEMQSKDVPMDE-------YTFSTMLSGIAGLSALT 284 (525)
Q Consensus 223 ~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 284 (525)
.+......+.. ....+...+.. .|++++|..+|+++.+.. +.+. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 88777654443 33333333322 258899999999998763 2232 34666677888899999
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
+|...+..+.+... +...+..+...+...|+++.|...++.+. +.+..+|..+...+...|++++|+..++++.+
T Consensus 261 ~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 261 DAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999998763 37788889999999999999999999886 45678899999999999999999999999998
Q ss_pred CCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCC
Q 048766 362 VRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGS 436 (525)
Q Consensus 362 ~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~ 436 (525)
..| +...+..+...+...|+ +++|.++++++.+. .+.+...+..++..|...|++++|...++++ +..+
T Consensus 339 ---~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 339 ---LNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp ---HCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred ---hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 445 46788889999999999 99999999999864 2445778999999999999999999999986 1111
Q ss_pred c----hhHHHHHHHHHhcC----------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 437 Y----GVVWRALLSASGAC----------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 437 ~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
. ...+......+... |++++|+..++++++..|+++.++..++.+|...|++++|...++++.+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 12244455667777 999999999999999999999999999999999999999999999998876
Q ss_pred Cc
Q 048766 503 LR 504 (525)
Q Consensus 503 ~~ 504 (525)
+.
T Consensus 493 ~~ 494 (537)
T 3fp2_A 493 RT 494 (537)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-22 Score=197.42 Aligned_cols=364 Identities=9% Similarity=0.006 Sum_probs=217.7
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHH
Q 048766 69 VVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDM 148 (525)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (525)
...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3456666666777777777777777766542 3356667777777777777777777777777664 3445667777777
Q ss_pred HHhcCCHHHHHHHHhhccCCCh------hhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048766 149 YGKCGSVEDAIGVFGEMIDKDI------ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIM 222 (525)
Q Consensus 149 ~~~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 222 (525)
|...|++++|...|+++.+.++ ..+..++..+... .
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~------------------- 145 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------R------------------- 145 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------H-------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------H-------------------
Confidence 7777777777777777654322 3333333322110 1
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchH
Q 048766 223 ILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASI 302 (525)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 302 (525)
+..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|...+..+.+.. +.+.
T Consensus 146 ------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 211 (450)
T 2y4t_A 146 ------------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNT 211 (450)
T ss_dssp ------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCH
T ss_pred ------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 1122233344444444444444444331 2234444444444444555555555544444433 3334
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHH------------HHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNA------------MITGYARNGDLTKVIELFEQLKTVRDLQP 367 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 367 (525)
.++..++.+|...|++++|...|+.+. +.+...+.. ++..+...|++++|+..|+++.+ ..|
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p 288 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEP 288 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Confidence 445555555555555555555555543 122223322 36777888888888888888887 455
Q ss_pred C-----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhH
Q 048766 368 D-----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVV 440 (525)
Q Consensus 368 ~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~ 440 (525)
+ ...+..+...+...|+ +++|.+.++++.+. .+.+...|..++.+|...|++++|...++++ ...|+ ...
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 5 3466777778888888 88888888887753 1335778888888888888888888888886 44454 444
Q ss_pred HHHHH------------HHHhcCC-----ChHHHHHHHHH-HHhhcCCCh----------hHHHHHHHHHhhccChhHHH
Q 048766 441 WRALL------------SASGACS-----DLDVARISAAE-VIKLEGDSD----------YVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 441 ~~~l~------------~~~~~~~-----~~~~A~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~A~ 492 (525)
+..+. ..|...| +.+++.+.+++ +++..|++. ..+..+..+|...|+.+.+.
T Consensus 366 ~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44444 2343344 67788888887 677666532 24556667777666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-21 Score=178.12 Aligned_cols=301 Identities=12% Similarity=0.048 Sum_probs=171.0
Q ss_pred HHHHHHHhCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCh
Q 048766 175 SVIAASARNGNLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRV 248 (525)
Q Consensus 175 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 248 (525)
.+...+...|++++|+..|+++ .+.+...+..+...+...|++++|...|+++.+ .+...+..+..++...|++
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh
Confidence 3333444444444444444433 122333444455555555555555555554431 2344566666677777777
Q ss_pred hHHHHHHHHHhhCCCCC----CHHHHHHH------------HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 048766 249 PEALHLFGEMQSKDVPM----DEYTFSTM------------LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMY 312 (525)
Q Consensus 249 ~~a~~~~~~m~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (525)
++|...|+++... .| +...+..+ ...+...|++++|...++.+.+.. +.+..++..+..++
T Consensus 88 ~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 88 DEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECF 164 (359)
T ss_dssp HHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 7777777776654 33 22222222 355666677777777777666654 44556666677777
Q ss_pred HcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHH------------HHH
Q 048766 313 SKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL------------NVL 376 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~ 376 (525)
...|++++|...++.+. +.+..++..+...+...|++++|...+++..+ ..|+ ...+. .+.
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777664 33455666777777777777777777777766 3343 22221 123
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCC-h----hHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPT-V----EHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASG 449 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 449 (525)
..+...|+ +++|.+.++++.+. .|+ + ..+..++..|...|++++|...+++. ...| +...+..++..+.
T Consensus 242 ~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 242 EELIRDGR-YTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44555666 66666666666543 232 1 22334556666666666666666665 2122 4555666666666
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
..|++++|...++++++.+|+++.++..+..+....
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 666666666666666666666666666665555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-20 Score=175.53 Aligned_cols=295 Identities=10% Similarity=-0.029 Sum_probs=249.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 048766 201 TISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277 (525)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 277 (525)
...+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|...|+++.+.. +.+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 45677888999999999999999998763 456788999999999999999999999998763 44678899999999
Q ss_pred ccccchHHHHHHHHHHHHhCCC---chHHHHHHH------------HHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHH
Q 048766 278 AGLSALTWGMLIHSCVIKQGLD---ASIVVASAL------------LDMYSKCGQVEIADSMFRSLC---RKNLVTWNAM 339 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 339 (525)
...|++++|...++.+.+.. + .+...+..+ ...+...|++++|.+.++.+. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999998875 3 355555555 578899999999999999986 4567789999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHH--------
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCC-------- 410 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~-------- 410 (525)
...+...|++++|+..++++.+.. +.+...+..+...+...|+ +++|.+.++.+.+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGD-HELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---CccchHHHHHHHHHHHH
Confidence 999999999999999999999842 3367888899999999999 99999999999864 343 33332
Q ss_pred ----HHHHHHhccCChHHHHHHHHHh-CCCCc-h----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 411 ----SMIRLMGQKGEVWRAQRMIREL-GFGSY-G----VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 411 ----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
.++..+.+.|++++|...++++ ...|+ . ..+..++..+...|++++|+..++++++..|+++.++..++.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3367789999999999999987 22233 2 235567888999999999999999999999999999999999
Q ss_pred HHhhccChhHHHHHHHHHHHcCC
Q 048766 481 LYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++...|++++|...++++.+..+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999988754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-18 Score=170.08 Aligned_cols=351 Identities=11% Similarity=-0.031 Sum_probs=237.7
Q ss_pred cCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh----cCCHHHHHHHHhhccCC-ChhhHHHHHHHHHh----CCChH
Q 048766 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK----CGSVEDAIGVFGEMIDK-DIISWNSVIAASAR----NGNLE 187 (525)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 187 (525)
.+++++|...|+...+.| +...+..|...|.. .++.++|...|++..+. +...+..+...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 344444444444444432 23344444444444 44455555444444332 33344444444444 44555
Q ss_pred HHHHHHhcC-CCCCcchHHHHHHHHHh----cCChHHHHHHHhcCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHH
Q 048766 188 LAFGFLHRL-PNPDTISYNEVINGIAQ----FGDIEDAIMILSSMPS-PNSSSWNSILTGYVN----RNRVPEALHLFGE 257 (525)
Q Consensus 188 ~a~~~~~~~-~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 257 (525)
+|...|++. ...+...+..+...|.. .++.++|...|++..+ .+...+..+...|.. .+++++|..+|++
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 555555544 12233444555555554 5566666666665442 455566777777776 7888888888888
Q ss_pred HhhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhcc
Q 048766 258 MQSKDVPMDEYTFSTMLSGIAG----LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK----CGQVEIADSMFRSLC 329 (525)
Q Consensus 258 m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 329 (525)
..+.| +...+..+...+.. .+++++|..+++...+.+ +...+..+..+|.. .++.++|...|+...
T Consensus 213 a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 213 SATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 87764 45566666666664 778888888888887765 34455667777777 889999999999887
Q ss_pred C-CCHhHHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCC---CCcchHHHHHHHhhhhh
Q 048766 330 R-KNLVTWNAMITGYARN-----GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD---IPFDKVSEYFESMTKDY 400 (525)
Q Consensus 330 ~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~~a~~~~~~~~~~~ 400 (525)
+ .+...+..+...|... +++++|+.+|++..+.+ +...+..+...+...| + +++|.++|++..+.
T Consensus 287 ~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~-~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 287 EQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEE-HKKAVEWFRKAAAK- 360 (490)
T ss_dssp TTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHH-HHHHHHHHHHHHHT-
T ss_pred HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHC-
Confidence 4 4666788888888887 89999999999998854 3345556666665545 5 88999999998763
Q ss_pred CCCCChhHHHHHHHHHhc----cCChHHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCC--
Q 048766 401 GIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGD-- 470 (525)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~-- 470 (525)
.++..+..+...|.. .+++++|...+++.-...++..+..+...|.. .+++++|...|+++.+.+|+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 467788889999988 89999999999987223457778888888887 89999999999999999954
Q ss_pred -ChhHHHHHHHHHhhc
Q 048766 471 -SDYVYVMLCNLYTSH 485 (525)
Q Consensus 471 -~~~~~~~l~~~~~~~ 485 (525)
++.+...++.++...
T Consensus 438 ~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 438 GTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHhcCHhH
Confidence 777788887776653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-19 Score=166.63 Aligned_cols=283 Identities=10% Similarity=-0.003 Sum_probs=182.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 048766 201 TISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277 (525)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 277 (525)
...+..++..+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33444444555555555555555554431 233345555566666666666666666666542 23445555666666
Q ss_pred cccc-chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHH
Q 048766 278 AGLS-ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 278 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
...| ++++|...++.+.+.. +.+...+..+..++...|++++|...++.+. +.+...+..+...+...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 6666 6666666666666554 3345556667777777777777777777665 233456666777777777777777
Q ss_pred HHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC-------CCCChhHHHHHHHHHhccCChHHH
Q 048766 354 ELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYG-------IKPTVEHCCSMIRLMGQKGEVWRA 425 (525)
Q Consensus 354 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 425 (525)
+.++++.+ ..| +...+..+...+...|+ +++|...++++.+... .+.....+..++..|.+.|++++|
T Consensus 180 ~~~~~al~---~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 180 RFFSQALS---IAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHT---TCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH---hCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777777 334 45666777777777777 7777777777765321 123356777788888888888888
Q ss_pred HHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH-hhccChh
Q 048766 426 QRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY-TSHGNWD 489 (525)
Q Consensus 426 ~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 489 (525)
...+++. . .+.+...+..++..+...|++++|.+.++++++..|+++.++..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888776 2 2234567777777888888888888888888888888888888888877 4455543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-20 Score=173.02 Aligned_cols=278 Identities=12% Similarity=0.033 Sum_probs=215.5
Q ss_pred cCChHHHHH-HHhcCCC-----C--CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHH
Q 048766 214 FGDIEDAIM-ILSSMPS-----P--NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTW 285 (525)
Q Consensus 214 ~~~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 285 (525)
.|++++|.. .|++..+ | +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 6654442 1 34567777888888888888888888887763 4466777788888888888888
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-CHhHHHH---------------HHHHHHhcC
Q 048766 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--K-NLVTWNA---------------MITGYARNG 347 (525)
Q Consensus 286 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~ 347 (525)
|...++.+.+.. +.+..++..+..+|...|++++|.+.++.+.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 888888888776 55677788888888888888888888887752 2 2222211 133334889
Q ss_pred ChhHHHHHHHHHhhCCCCCCC---HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH
Q 048766 348 DLTKVIELFEQLKTVRDLQPD---SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (525)
++++|+..++++.+. .|+ ..++..+...+...|+ +++|.+.++++.+. .+.++..+..++..|.+.|++++
T Consensus 196 ~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 196 LFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGE-YDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999984 454 7888899999999999 99999999999864 23357889999999999999999
Q ss_pred HHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC-----------hhHHHHHHHHHhhccChhHH
Q 048766 425 AQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS-----------DYVYVMLCNLYTSHGNWDVA 491 (525)
Q Consensus 425 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 491 (525)
|+..++++ .. +.+...+..++..+.+.|++++|+..++++++..|++ +.+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 32 3457788999999999999999999999999999887 78999999999999999999
Q ss_pred HHHHHHHH
Q 048766 492 SVMRNFMR 499 (525)
Q Consensus 492 ~~~~~~~~ 499 (525)
..++++..
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 99886443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-18 Score=167.94 Aligned_cols=406 Identities=9% Similarity=0.027 Sum_probs=271.0
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHH
Q 048766 68 SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147 (525)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 147 (525)
+...|..++. +.+.|++++|..+|+++.+. .+-+...|..++..+.+.|+++.|..+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5567777777 36778888888888888774 23456677788888888888888888888887753 56666666664
Q ss_pred HH-HhcCCHHHHHH----HHhhccC------CChhhHHHHHHHHHh---------CCChHHHHHHHhcCCC-CCc---ch
Q 048766 148 MY-GKCGSVEDAIG----VFGEMID------KDIISWNSVIAASAR---------NGNLELAFGFLHRLPN-PDT---IS 203 (525)
Q Consensus 148 ~~-~~~g~~~~a~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~ 203 (525)
.. ...|+.+.|.+ +|+.... ++...|...+....+ .|+++.|..+|++... |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34566655544 5554421 234455555554443 4566666666666522 221 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH------hhCC---CCCCH-------
Q 048766 204 YNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEM------QSKD---VPMDE------- 267 (525)
Q Consensus 204 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------~~~~---~~~~~------- 267 (525)
|..........|. ..+..++. .+.+++..|..+++++ .+.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2111111000110 01111110 1234566666666652 2221 34442
Q ss_pred -HHHHHHHHHhcc----ccch----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-------CCCHH-------HHHHH
Q 048766 268 -YTFSTMLSGIAG----LSAL----TWGMLIHSCVIKQGLDASIVVASALLDMYSK-------CGQVE-------IADSM 324 (525)
Q Consensus 268 -~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~ 324 (525)
..|...+..... .++. ..+...|+++.... +.+..++..++..+.+ .|+++ .|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 334433322211 1222 36777888888774 5667888888888775 79987 89999
Q ss_pred HHhccC---C-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 325 FRSLCR---K-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 325 ~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
+++... | +...|..++..+.+.|++++|..+|+++.+ ..|+. ..|..++..+.+.|+ +++|.++|++..+
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKARE 384 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHh
Confidence 998863 3 567899999999999999999999999999 66753 478888888888888 9999999999985
Q ss_pred hhCCCCC-hhHHHHHHHH-HhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh-
Q 048766 399 DYGIKPT-VEHCCSMIRL-MGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY- 473 (525)
Q Consensus 399 ~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~- 473 (525)
. .|. ...+...+.. +...|++++|..+|++. ...| ++..|..++..+.+.|+.++|..+|++++...|.++.
T Consensus 385 ~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 D---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp C---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred c---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 3 343 3333333332 33689999999999986 2233 4778889999999999999999999999998876665
Q ss_pred ---HHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 474 ---VYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 474 ---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.|...+......|+.+.+..+.+++.+..+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 788888888899999999999999987655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-19 Score=166.42 Aligned_cols=266 Identities=11% Similarity=0.025 Sum_probs=231.1
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHH
Q 048766 230 PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALL 309 (525)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 309 (525)
.+...+..++..+...|++++|..+|+++.... +.+...+..++.++...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 566778889999999999999999999998763 4455667778888899999999999999999876 55678888899
Q ss_pred HHHHcCC-CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCC
Q 048766 310 DMYSKCG-QVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDI 384 (525)
Q Consensus 310 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 384 (525)
..+...| ++++|.+.|+.+. +.+...|..+...+...|++++|+..++++.+. .| +...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHhh
Confidence 9999999 9999999999986 345678999999999999999999999999984 44 45667778889999999
Q ss_pred CcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CC-------CCchhHHHHHHHHHhcCCC
Q 048766 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GF-------GSYGVVWRALLSASGACSD 453 (525)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~-------~~~~~~~~~l~~~~~~~~~ 453 (525)
+++|.+.++++.+. .+.+...+..++..|...|++++|...++++ +. +.....+..++..+...|+
T Consensus 175 -~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 175 -SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp -HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999853 2345788999999999999999999999986 11 3335688899999999999
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+++|+..++++++..|+++.++..++.++...|++++|...++++.+..+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999988876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-17 Score=166.72 Aligned_cols=400 Identities=12% Similarity=0.083 Sum_probs=252.2
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHhC--CCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 048766 7 FHLLRASSDLGWDTYCQQLHCYILKSG--FLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGK 84 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (525)
....++|+..|.+.+|.++++.+.-.+ +..+....+.++.+..+. +..+..+..+.....+ ...+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 455666777777777777777776332 112344555555555544 3344444444433222 3446666777788
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhh
Q 048766 85 YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGE 164 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 164 (525)
+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++...|++++|.+.|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 8888888777521 1222233332 556777777777643 3356777788888888888888888765
Q ss_pred ccCCChhhHHHHHHHHHhCCChHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHH
Q 048766 165 MIDKDIISWNSVIAASARNGNLELAFGFLHRL--PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGY 242 (525)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 242 (525)
. .|...|..++.++.+.|++++|.+.|... ..+++...+.++.+|++.+++++...+. ..++...|..+...|
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 4 56667777888888888888888887665 2233334445777778877777644443 235556666777778
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHH
Q 048766 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322 (525)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 322 (525)
...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence 8888888888888774 36777778888888888887777765 34567777777777788888887
Q ss_pred HHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcC--CCCCcchHHHHHHHhhhh
Q 048766 323 SMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSH--TDIPFDKVSEYFESMTKD 399 (525)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~ 399 (525)
..... ...++..+..++..|.+.|.+++|+.+++.... ..|. ...|.-+...+++ .++ ..++.++|. .+
T Consensus 1271 ~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~pek-lmEhlk~f~---~r 1342 (1630)
T 1xi4_A 1271 MCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQK-MREHLELFW---SR 1342 (1630)
T ss_pred HHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHH-HHHHHHHHH---Hh
Confidence 76664 334555666778888888888888888877766 4443 3344344444433 333 334444443 32
Q ss_pred hCCCC------ChhHHHHHHHHHhccCChHHHHHHHHHh--------------CCCCchhHHHHHHHHHhcCC
Q 048766 400 YGIKP------TVEHCCSMIRLMGQKGEVWRAQRMIREL--------------GFGSYGVVWRALLSASGACS 452 (525)
Q Consensus 400 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~ 452 (525)
-.+++ +...|..++..|.+.|+++.|....-+- ....++..+...+..|...+
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 14443 4667888888888888888887333221 23345566666666665444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-17 Score=167.12 Aligned_cols=447 Identities=12% Similarity=0.047 Sum_probs=323.1
Q ss_pred HHHHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCC-HHHHH------------HHHhcCCCCCc----
Q 048766 7 FHLLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINS-LADAH------------KMFVEIPQPSV---- 69 (525)
Q Consensus 7 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~------------~~~~~~~~~~~---- 69 (525)
..|+..+=+.+++..-+.+++.-+..| ..++.++|+|...|...++ ++.-+ +..++- +|..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~r-Dp~la~ia 920 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKR-DPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhc-CcchHHHH
Confidence 445555555666677777788778887 7899999999999986653 44311 111111 1111
Q ss_pred -----------------ccHHHHHHHHHhcCChHHHHH-----------HHHHHHhcCC--CCCHhhHHHHHHHHcccCC
Q 048766 70 -----------------VSWNSLISGYVQSGKYRKALN-----------LFVELERSEI--YADAYSFTSALAACGQLGS 119 (525)
Q Consensus 70 -----------------~~~~~ll~~~~~~~~~~~A~~-----------~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~ 119 (525)
..|....+-+++..+.+-=-. +.++-....+ ..++.-....+++|...|.
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~agl 1000 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADL 1000 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCC
Confidence 112222222233333222111 1111111111 1234445667788888999
Q ss_pred hHHHHHHHHHHHHcc--cCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCC
Q 048766 120 LQLGMAIHSKIVKYS--LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLP 197 (525)
Q Consensus 120 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 197 (525)
+.++.+++++..-.+ +..+....+.++....+. +..+..+..+....-+ ...+...+...|.+++|..+|++..
T Consensus 1001 p~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1001 PNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 999999999888432 113445667777777776 5566666666655333 4557888999999999999999974
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 048766 198 NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277 (525)
Q Consensus 198 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 277 (525)
.. ....+.+ +...+++++|.++.+++ .+..+|..+..++...|++++|.+.|.+. -|...|..++.++
T Consensus 1077 ~~-~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1077 VN-TSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAA 1144 (1630)
T ss_pred CH-HHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHH
Confidence 21 1112222 23788999999999987 44668999999999999999999999664 4677888999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
.+.|+++++.+++...++.. +++.+.+.++.+|++.++++....+. ..++...|..+...|...|++++|..+|.
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999888765 33334446899999999998655553 45677778889999999999999999999
Q ss_pred HHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc
Q 048766 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY 437 (525)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (525)
.. ..|..+...+.+.|+ +++|.+.+++.. +..+|..+..++...|++..|......+ ..+
T Consensus 1220 kA----------~ny~rLA~tLvkLge-~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~ 1279 (1630)
T 1xi4_A 1220 NV----------SNFGRLASTLVHLGE-YQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVH 1279 (1630)
T ss_pred hh----------hHHHHHHHHHHHhCC-HHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcC
Confidence 85 258899999999999 999999998763 4588999999999999999999887653 345
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh--ccChhHHHHHHH
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS--HGNWDVASVMRN 496 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~ 496 (525)
+..+..++..|.+.|.+++|+.+++.++.++|.+...|..|+.+|.+ .++..++.++|.
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56667888999999999999999999999999999999888888766 456666666654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-18 Score=163.91 Aligned_cols=360 Identities=9% Similarity=-0.023 Sum_probs=296.8
Q ss_pred HHHHHHHHHcccCCCcchhhHHHHHHHh----cCCHHHHHHHHhhccCC-ChhhHHHHHHHHHh----CCChHHHHHHHh
Q 048766 124 MAIHSKIVKYSLERGVVIANCLIDMYGK----CGSVEDAIGVFGEMIDK-DIISWNSVIAASAR----NGNLELAFGFLH 194 (525)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~ 194 (525)
...+....+. .+...+..+...|.. .+++++|...|++..+. +...+..+...|.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444444443 356777778888887 89999999999988654 67788889999998 999999999999
Q ss_pred cC-CCCCcchHHHHHHHHHh----cCChHHHHHHHhcCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHhhCCCC
Q 048766 195 RL-PNPDTISYNEVINGIAQ----FGDIEDAIMILSSMPS-PNSSSWNSILTGYVN----RNRVPEALHLFGEMQSKDVP 264 (525)
Q Consensus 195 ~~-~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~ 264 (525)
+. ...+...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.++|++..+.|
T Consensus 104 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-- 181 (490)
T 2xm6_A 104 KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-- 181 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 98 33466778888889988 8899999999998764 456678888888887 789999999999998875
Q ss_pred CCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHhcc-CCCHhH
Q 048766 265 MDEYTFSTMLSGIAG----LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK----CGQVEIADSMFRSLC-RKNLVT 335 (525)
Q Consensus 265 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~ 335 (525)
+...+..+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|++.. ..+...
T Consensus 182 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 257 (490)
T 2xm6_A 182 -NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIA 257 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHH
T ss_pred -CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 67777788888877 899999999999999876 45567778888876 889999999999987 456677
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCC-----CCCcchHHHHHHHhhhhhCCCCCh
Q 048766 336 WNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHT-----DIPFDKVSEYFESMTKDYGIKPTV 406 (525)
Q Consensus 336 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~ 406 (525)
+..+...|.. .+++++|+++|++..+.| +...+..+...+... ++ +++|...+++..+. .++
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~-~~~A~~~~~~a~~~----~~~ 328 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKN-REQAISWYTKSAEQ----GDA 328 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCC-HHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhc----CCH
Confidence 8888888888 899999999999998854 344555666666655 67 99999999998764 355
Q ss_pred hHHHHHHHHHhccC---ChHHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 407 EHCCSMIRLMGQKG---EVWRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 407 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
..+..+...|.+.| ++++|++.+++.-...++..+..+...|.. .+++++|+..|+++.+.+ ++.++..|+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg 406 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 67888888888766 889999999987323567888889888888 899999999999998865 689999999
Q ss_pred HHHhh----ccChhHHHHHHHHHHHcCC
Q 048766 480 NLYTS----HGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 480 ~~~~~----~g~~~~A~~~~~~~~~~~~ 503 (525)
.+|.. .+++++|...|++..+.+.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99998 8999999999999999874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-18 Score=157.02 Aligned_cols=282 Identities=12% Similarity=0.162 Sum_probs=127.3
Q ss_pred ccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHH
Q 048766 50 KINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSK 129 (525)
Q Consensus 50 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 129 (525)
+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888886554 8888888888888888888888652 5677888888888888888888887776
Q ss_pred HHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHH
Q 048766 130 IVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVIN 209 (525)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 209 (525)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..++..|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 6663 45567788888888888888888877753 66678888888888888888888888877 47888888
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHH
Q 048766 210 GIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLI 289 (525)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 289 (525)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.++++..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888888 3778888888888888888888555443 223334455677888888888888888
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHcC--CCHHHHHHHHHhcc---C-----CCHhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 290 HSCVIKQGLDASIVVASALLDMYSKC--GQVEIADSMFRSLC---R-----KNLVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~---~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
++...... +....+|+.+..+|++- +++.+..+.|..-. + .+...|..+.-.|.+.++++.|..++-
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 88887665 56677777777777754 33444444444332 1 245679999999999999998887543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-18 Score=167.43 Aligned_cols=367 Identities=11% Similarity=-0.007 Sum_probs=192.9
Q ss_pred HhhHHHHHHHHcccCChHHHHHHHHHHHHc-----c---cCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHH
Q 048766 104 AYSFTSALAACGQLGSLQLGMAIHSKIVKY-----S---LERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNS 175 (525)
Q Consensus 104 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 175 (525)
...|+.+...+...|+.++|.+.|++..+. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~-------- 122 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH-------- 122 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------
Confidence 344555556666666666666666555432 0 111233455555566666666666555544421
Q ss_pred HHHHHHhCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhc--CChHHHHHHHhcCCC--C-CcccHHHHHHH---HH
Q 048766 176 VIAASARNGNLELAFGFLHRLPN----PDTISYNEVINGIAQF--GDIEDAIMILSSMPS--P-NSSSWNSILTG---YV 243 (525)
Q Consensus 176 l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~ 243 (525)
+...... ....++..+..++... +++++|...|++..+ | +...+..+..+ +.
T Consensus 123 ----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 123 ----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp ----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred ----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 0000000 1122333333333332 235555555554431 2 22223333322 23
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh----ccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHH
Q 048766 244 NRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI----AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVE 319 (525)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (525)
..++.++|++.+++..+.+ +.+...+..+...+ ...++.++|...++...+.. +.+..++..+...|...|+++
T Consensus 187 ~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp HSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHH
T ss_pred CchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchH
Confidence 3455666666666655542 22333343333222 23455666666666666654 445556666667777777777
Q ss_pred HHHHHHHhcc---CCCHhHHHHHHHHHHh-------------------cCChhHHHHHHHHHhhCCCCCC-CHhHHHHHH
Q 048766 320 IADSMFRSLC---RKNLVTWNAMITGYAR-------------------NGDLTKVIELFEQLKTVRDLQP-DSVTFLNVL 376 (525)
Q Consensus 320 ~A~~~~~~~~---~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 376 (525)
+|...+++.. +.+..++..+...|.. .+.++.|+..+++..+ ..| +..++..+.
T Consensus 265 ~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~lg 341 (472)
T 4g1t_A 265 KAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE---ANDNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH---HCTTTCCCHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh---cCCchhhhhhhHH
Confidence 7777776664 2334455555444432 2345678888888877 344 456677888
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChh----HHHHHHHH-HhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhc
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVE----HCCSMIRL-MGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGA 450 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 450 (525)
..+...|+ +++|.+.|++..+. .|+.. .+..+... +...|++++|+..+++. ...|+......
T Consensus 342 ~~~~~~~~-~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~------- 410 (472)
T 4g1t_A 342 SLHALADQ-YEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK------- 410 (472)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------
T ss_pred HHHHHhcc-HHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------
Confidence 88888998 99999999988753 34322 23333332 34678999999999876 55555433322
Q ss_pred CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCcccEE
Q 048766 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAGCSWI 512 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 512 (525)
....+..++++.++.+|+++.++..|+.+|...|++++|++.|++..+.+.......+|+
T Consensus 411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234556778888889999999999999999999999999999999999887655555553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-17 Score=160.81 Aligned_cols=416 Identities=12% Similarity=0.081 Sum_probs=275.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048766 26 HCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--P-SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYA 102 (525)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 102 (525)
++..++.. |-+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++.+. .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44445554 557777877777 4667888888888887765 3 4446777888888888888888888888774 36
Q ss_pred CHhhHHHHHHHH-cccCChHHHHH----HHHHHHHc-ccCC-CcchhhHHHHHHHh---------cCCHHHHHHHHhhcc
Q 048766 103 DAYSFTSALAAC-GQLGSLQLGMA----IHSKIVKY-SLER-GVVIANCLIDMYGK---------CGSVEDAIGVFGEMI 166 (525)
Q Consensus 103 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 166 (525)
+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766666666433 33466665554 56655443 4333 44566666666544 678888888888876
Q ss_pred C-CCh---hhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHh----------cCC---C
Q 048766 167 D-KDI---ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILS----------SMP---S 229 (525)
Q Consensus 167 ~-~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------~~~---~ 229 (525)
. |.. ..|..........|. ..+..++.. ..+++..|..++. ... .
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 5 221 122222111000010 011111110 1122333333222 111 1
Q ss_pred CC--------cccHHHHHHHHHhc----CCh----hHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc-------ccchH--
Q 048766 230 PN--------SSSWNSILTGYVNR----NRV----PEALHLFGEMQSKDVPMDEYTFSTMLSGIAG-------LSALT-- 284 (525)
Q Consensus 230 ~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~~-- 284 (525)
|+ ...|...+...... ++. .++..+|++.... .+-+...|...+..+.. .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 11 12344444332221 222 3677888888775 24567777777777764 68876
Q ss_pred -----HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CC-CH-hHHHHHHHHHHhcCChhHHHHH
Q 048766 285 -----WGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC--RK-NL-VTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 285 -----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|.++
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 889999988874345678889999999999999999999999886 33 33 4788899999999999999999
Q ss_pred HHHHhhCCCCCCC-HhHHHHHHHH-HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 356 FEQLKTVRDLQPD-SVTFLNVLAA-CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 356 ~~~~~~~~~~~p~-~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
|++..+. .|+ ...+...... +...|+ .++|..+|+...+.. +.++..|..++..+.+.|+.++|..+|++.
T Consensus 379 ~~~Al~~---~~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 379 FKKARED---ARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHTC---TTCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHhc---cCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 9999983 443 3333332222 235787 999999999998652 336788999999999999999999999987
Q ss_pred ---CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 433 ---GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 433 ---~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
+..|+ ...|...+......|+.+.+..+++++.+..|+
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22333 347878888888899999999999999998874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-18 Score=160.57 Aligned_cols=285 Identities=15% Similarity=0.135 Sum_probs=128.6
Q ss_pred ccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhc
Q 048766 116 QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHR 195 (525)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 195 (525)
+.|++++|.+.++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445667777766665 22246777777777777777777777543 4555677777777777777777776655
Q ss_pred CC--CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 048766 196 LP--NPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273 (525)
Q Consensus 196 ~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 273 (525)
.. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..++..|...|++++|..+|..+ ..|..+
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 52 23456677777888888888887777753 66678888888888888888888888866 367888
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHH
Q 048766 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVI 353 (525)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (525)
+.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHH
Confidence 88888888888888888777 257788888888888888888876666544 44444556888899999999999
Q ss_pred HHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC------ChhHHHHHHHHHhccCChHHHH
Q 048766 354 ELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP------TVEHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 354 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 426 (525)
.+++.... ..+ -...|+.+.-.+++-. +++..+.++....+-.++| +...|..++..|...++++.|.
T Consensus 228 ~lLe~aL~---le~ah~~~ftel~il~~ky~--p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 228 TMLEAALG---LERAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHTT---STTCCHHHHHHHHHHHHTTC--HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhC---CcHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99998876 444 3455666655555543 4555555554444324454 4677889999999999999888
Q ss_pred HHHHHh
Q 048766 427 RMIREL 432 (525)
Q Consensus 427 ~~~~~~ 432 (525)
...-+-
T Consensus 303 ~tm~~h 308 (449)
T 1b89_A 303 ITMMNH 308 (449)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 876654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=150.69 Aligned_cols=269 Identities=8% Similarity=0.007 Sum_probs=195.0
Q ss_pred HHhcCChHHHHHHHhcCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHH
Q 048766 211 IAQFGDIEDAIMILSSMPSPN----SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWG 286 (525)
Q Consensus 211 ~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 286 (525)
....|+++.|+..++.....+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666665544322 12334456677777777777765543 1345566666777777777777777
Q ss_pred HHHHHHHHHhCC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 048766 287 MLIHSCVIKQGL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDL 365 (525)
Q Consensus 287 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (525)
...++.+...+. +.+...+..+..++...|++++|.+.++. +.+...+..++..+.+.|++++|.+.++++.+ .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~ 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD---Q 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---h
Confidence 777777766653 44566677778889999999999999988 56778899999999999999999999999998 5
Q ss_pred CCCHhHHH---HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhH
Q 048766 366 QPDSVTFL---NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVV 440 (525)
Q Consensus 366 ~p~~~~~~---~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 440 (525)
.|+..... ..+..+...|+ +++|..+|+++.+. .+.++..++.++.++.+.|++++|...++++ ...| ++.+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~-~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEK-LQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 56643221 23344445677 99999999999874 3557888999999999999999999999986 3333 5678
Q ss_pred HHHHHHHHhcCCChHH-HHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 441 WRALLSASGACSDLDV-ARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
+..++..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 8888888888998875 57899999999998887654 455555555554433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-19 Score=164.84 Aligned_cols=262 Identities=9% Similarity=-0.030 Sum_probs=202.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 310 (525)
+...+..+...+.+.|++++|..+|+++.... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777777888888888888888877653 4466777778888888888888888888887765 455777888888
Q ss_pred HHHcCCCHHHHHHHHHhccCCC-------------HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 048766 311 MYSKCGQVEIADSMFRSLCRKN-------------LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 377 (525)
+|...|++++|...++++...+ ...+..+...+...|++++|+..++++.+.....++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888888875321 122344578888999999999999999984311115788889999
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLD 455 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 455 (525)
.+...|+ +++|.+.++++.+. .+.+...|..++.+|.+.|++++|+..++++ ...| +...+..++..+...|+++
T Consensus 222 ~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGE-FNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999 99999999999864 2346788999999999999999999999987 3334 4778899999999999999
Q ss_pred HHHHHHHHHHhhcCC------------ChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 456 VARISAAEVIKLEGD------------SDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
+|+..+++++++.|+ +...+..++.++...|+.+.+....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999876 367899999999999999999887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=159.37 Aligned_cols=263 Identities=10% Similarity=-0.000 Sum_probs=209.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLD 310 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 310 (525)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33456677777888888888888888877653 4466777777788888888888888888887775 556677778888
Q ss_pred HHHcCCCHHHHHHHHHhccC---CCHhHHHHH--------------HH-HHHhcCChhHHHHHHHHHhhCCCCCCCHhHH
Q 048766 311 MYSKCGQVEIADSMFRSLCR---KNLVTWNAM--------------IT-GYARNGDLTKVIELFEQLKTVRDLQPDSVTF 372 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 372 (525)
.+...|++++|.+.++.+.. .+...+..+ .. .+...|++++|+..++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHH
Confidence 88888888888888888752 222233332 22 3677889999999999999843 3367888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhc
Q 048766 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGA 450 (525)
Q Consensus 373 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~ 450 (525)
..+...+...|+ +++|.+.++++.+. .+.+...+..++..|.+.|++++|...++++ .. +.+...+..++..+..
T Consensus 176 ~~la~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNN-YDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 889999999999 99999999999864 2345788999999999999999999999987 32 3457788899999999
Q ss_pred CCChHHHHHHHHHHHhhcCC------------ChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 451 CSDLDVARISAAEVIKLEGD------------SDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.|++++|.+.++++++..|+ ++.++..++.++...|++++|..++++..+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999998 788999999999999999999999875543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=162.55 Aligned_cols=277 Identities=12% Similarity=0.007 Sum_probs=205.1
Q ss_pred CChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH-HHHHHhhCCC-CC--CHHHHHHHHHHhccccchHHHHHHH
Q 048766 215 GDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALH-LFGEMQSKDV-PM--DEYTFSTMLSGIAGLSALTWGMLIH 290 (525)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 290 (525)
+.++.+...|+.+.+.+.. ++...|++++|.. .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444455555554432221 3445688999998 8887665321 11 3456778889999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 048766 291 SCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP 367 (525)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 367 (525)
+.+.+.. +.+..++..+..++...|++++|...++++. +.+..++..++..+...|++++|++.++++.+ ..|
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 163 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR---YTP 163 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TST
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCc
Confidence 9999876 5678889999999999999999999999886 45778999999999999999999999999998 445
Q ss_pred CHh-HHHH---------------HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 368 DSV-TFLN---------------VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 368 ~~~-~~~~---------------l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
+.. .+.. .+..+...|+ +++|...++++.+...-.++...+..++..|.+.|++++|+..+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL-FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTGGGCC---------------CTTHHHHHHHH-HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc-HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 2211 2333447787 9999999999986522222578899999999999999999999998
Q ss_pred h-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 432 L-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 432 ~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+ .. +.+...+..++..+...|++++|+..++++++..|+++.++..++.+|.+.|++++|...++++.+..+
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 7 32 344778899999999999999999999999999999999999999999999999999999999987544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-18 Score=151.47 Aligned_cols=249 Identities=6% Similarity=-0.022 Sum_probs=205.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCH--HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDE--YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG 316 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (525)
++-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. ..+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45566789999999999886553 3443 3556678899999999999976644 24678889999999999999
Q ss_pred CHHHHHHHHHhcc----CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHH
Q 048766 317 QVEIADSMFRSLC----RK-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391 (525)
Q Consensus 317 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~ 391 (525)
+.+.|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+...|+ +++|.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~-~~~A~~ 151 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDR-LDLARK 151 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCC-HHHHHH
Confidence 9999999999874 13 566778888999999999999999986 3467788889999999999 999999
Q ss_pred HHHHhhhhhCCCCChhHH---HHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 392 YFESMTKDYGIKPTVEHC---CSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
.++++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...+..++.++.+.|++++|+..++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999865 4654211 22345555679999999999998 3345678889999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHhhccChhH-HHHHHHHHHHcCCc
Q 048766 467 LEGDSDYVYVMLCNLYTSHGNWDV-ASVMRNFMRERGLR 504 (525)
Q Consensus 467 ~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 504 (525)
.+|+++.++..++.++...|+.++ +.++++++.+..+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999986 57899999877653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-18 Score=158.45 Aligned_cols=233 Identities=12% Similarity=-0.025 Sum_probs=197.6
Q ss_pred CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHH
Q 048766 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITG 342 (525)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 342 (525)
+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++. +.+..+|..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44558888889999999999999999999886 5678899999999999999999999999986 4567899999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCH-hH----------HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDS-VT----------FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~----------~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 411 (525)
|...|++++|+..++++.+ ..|+. .. +..+...+...|+ +++|.++++++.+...-.+++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK---QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCHHHHCC-------------------CCHH-HHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH---hCccchHHHhhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999988 45542 22 2334678888998 99999999999875222226889999
Q ss_pred HHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChh
Q 048766 412 MIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 489 (525)
++..|.+.|++++|+..++++ . .+.+..+|..++..+...|++++|+..++++++..|+++.++..++.+|...|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999987 2 23457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 048766 490 VASVMRNFMRERGL 503 (525)
Q Consensus 490 ~A~~~~~~~~~~~~ 503 (525)
+|...++++.+..+
T Consensus 299 ~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 299 EAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999987654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-17 Score=156.68 Aligned_cols=380 Identities=9% Similarity=-0.056 Sum_probs=223.8
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhc-----C--CCC-CHhhHHHHHHHHcccCChHHHHHHHHHHHHccc---
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERS-----E--IYA-DAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL--- 135 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 135 (525)
.....||.+...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...+++..+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987652 1 122 356889999999999999999999988875321
Q ss_pred ---C-CCcchhhHHHHHHHh--cCCHHHHHHHHhhccC--C-ChhhHHHHHHH---HHhCCChHHHHHHHhcC---CCCC
Q 048766 136 ---E-RGVVIANCLIDMYGK--CGSVEDAIGVFGEMID--K-DIISWNSVIAA---SARNGNLELAFGFLHRL---PNPD 200 (525)
Q Consensus 136 ---~-~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~---~~~~ 200 (525)
. ....++..+..++.. .+++++|+..|++..+ | +...+..+..+ +...++.++|++.+++. .+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 123455555555554 4578999999998854 4 34445444444 44567777888877776 3334
Q ss_pred cchHHHHHHHHHh----cCChHHHHHHHhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 048766 201 TISYNEVINGIAQ----FGDIEDAIMILSSMP---SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTM 273 (525)
Q Consensus 201 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 273 (525)
..++..+...+.. .+++++|...+++.. ..+...+..+...|...|++++|...+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4455555544443 355667777776654 2344567777777777888888888777776642 2334444444
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChh
Q 048766 274 LSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLT 350 (525)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 350 (525)
..++...+....... . ..........+..+.|...++... +.+..++..+...|...|+++
T Consensus 288 g~~y~~~~~~~~~~~----------~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR----------E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhHH----------H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 444322111100000 0 000000111233567777777765 345668888999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCHh----HHHHHHH-HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHH
Q 048766 351 KVIELFEQLKTVRDLQPDSV----TFLNVLA-ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRA 425 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 425 (525)
+|++.|++..+ ..|+.. .+..+.. .....|+ +++|++.|++.. .+.|+....... ...+
T Consensus 352 ~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l 415 (472)
T 4g1t_A 352 EAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKC-EDKAIHHFIEGV---KINQKSREKEKM---------KDKL 415 (472)
T ss_dssp HHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHH---HSCCCCHHHHHH---------HHHH
T ss_pred HHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH---hcCcccHHHHHH---------HHHH
Confidence 99999999988 444432 2222222 2346677 999999999887 456664333222 2333
Q ss_pred HHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 426 QRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 426 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
.++++.. ..+.++.+|..++..+...|++++|++.|+++++.+|.+|.+...+|
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4444443 22445788999999999999999999999999999998888877655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=138.05 Aligned_cols=193 Identities=11% Similarity=0.030 Sum_probs=153.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLN 374 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 374 (525)
|++...+..+...+.+.|++++|...|++.. +.+...+..+...+.+.|++++|+..+++..+ ..|+ ...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA---RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHH
Confidence 4556677778888888999999999988876 34567888888999999999999999999988 5664 667778
Q ss_pred HHHHHcCC-----------CCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHH
Q 048766 375 VLAACSHT-----------DIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVW 441 (525)
Q Consensus 375 l~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 441 (525)
+...+... |+ +++|+..+++..+. .| +...+..++.+|...|++++|+..|++. ....++..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 154 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGY-LEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR 154 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHH-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhhhhhhhhcccccC-HHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Confidence 88888888 88 99999999999854 55 5778889999999999999999999987 212678889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..++..+...|++++|+..++++++.+|+++.++..++.++...|++++|+..+++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-16 Score=144.01 Aligned_cols=230 Identities=9% Similarity=-0.024 Sum_probs=194.9
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHH
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYA 344 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 344 (525)
..+..+...+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++++. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 456677788889999999999999999876 5577888889999999999999999999886 446778999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCCHh-HHHHH--------------HH-HHcCCCCCcchHHHHHHHhhhhhCCCCChhH
Q 048766 345 RNGDLTKVIELFEQLKTVRDLQPDSV-TFLNV--------------LA-ACSHTDIPFDKVSEYFESMTKDYGIKPTVEH 408 (525)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--------------~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 408 (525)
..|++++|++.++++.+ ..|+.. .+..+ .. .+...|+ +++|.++++++.+. .+.+...
T Consensus 101 ~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 101 NEHNANAALASLRAWLL---SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-YRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HTTCHHHHHHHHHHHHH---TSTTTTTC--------------------CCTTSHHH-HHHHHHHHHHHHHH--STTCHHH
T ss_pred HcCCHHHHHHHHHHHHH---hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-HHHHHHHHHHHHhh--CCCCHHH
Confidence 99999999999999998 455433 22222 22 3677787 99999999999864 2346788
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+..++..|.+.|++++|...++++ .. +.+...+..++..+...|++++|+..++++++..|+++.++..++.++...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999987 22 3457788899999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCc
Q 048766 487 NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~ 504 (525)
++++|...++++.+..+.
T Consensus 255 ~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCc
Confidence 999999999999876544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-16 Score=139.33 Aligned_cols=216 Identities=12% Similarity=0.020 Sum_probs=144.4
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C----C----HhHHHHHH
Q 048766 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--K----N----LVTWNAMI 340 (525)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~ 340 (525)
..+...+...|++++|...+..+.+.. .+..++..+..++...|++++|...++.... | + ..+|..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333444444444444444444444444 3344455555555555555555555555431 1 1 35666777
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhcc
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQK 419 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 419 (525)
..+...|++++|+..++++.+ ..|+... +...|+ +++|.+.++.+... .| +...+..++..+...
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~---~~~~~~~-------~~~~~~-~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLT---EHRTADI-------LTKLRN-AEKELKKAEAEAYV---NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCCCHHH-------HHHHHH-HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHh---cCchhHH-------HHHHhH-HHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHh
Confidence 777778888888888887777 4555433 333455 77888888777642 33 456677778888888
Q ss_pred CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 420 GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 420 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
|++++|...++++ ..+.+...+..++..+...|++++|+..++++++..|+++.++..++.++...|++++|...+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888888876 22334667777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcC
Q 048766 498 MRERG 502 (525)
Q Consensus 498 ~~~~~ 502 (525)
..+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 77654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-16 Score=137.71 Aligned_cols=246 Identities=12% Similarity=0.029 Sum_probs=165.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCc--hHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDA--SIVVASALLDM 311 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 311 (525)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+....+ ....+..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445556666666666666666666542 2233355556666666666666666666666532111 13346677777
Q ss_pred HHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcc
Q 048766 312 YSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 387 (525)
+...|++++|...|+... +.+..+|..+...|...|++++|+..+++..+ ..|+ ...+..+...+...++ ++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~-~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKE-YV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHH-HH
Confidence 788888888888887775 34556788888888888888888888888887 4553 5555555523334446 88
Q ss_pred hHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCC---hHHHHHHHHHh----CCCCc------hhHHHHHHHHHhcCCC
Q 048766 388 KVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGE---VWRAQRMIREL----GFGSY------GVVWRALLSASGACSD 453 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~~~------~~~~~~l~~~~~~~~~ 453 (525)
+|.+.++++.+. .| +...+..++..+...|+ +++|...++++ ...|+ ...+..++..+...|+
T Consensus 160 ~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 160 KADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 898888888754 34 46677777888877777 77788887765 22233 2467778888999999
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
+++|++.++++++++|+++.+...+.......+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 237 KVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 9999999999999999999999988887766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=146.07 Aligned_cols=257 Identities=7% Similarity=-0.011 Sum_probs=169.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc---chHHHHHHHHHHHHhCCCchHHHHHH
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS---ALTWGMLIHSCVIKQGLDASIVVASA 307 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 307 (525)
+...+..+...|...+.++++......+...-...++..+..+...+...| +.++|...++...+.| +++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 344555666666666654444433222222111112225556666666667 7777777777777776 444444455
Q ss_pred HHHHHHcC----CCHHHHHHHHHhccCCCHhHHHHHHHH-H--HhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHc
Q 048766 308 LLDMYSKC----GQVEIADSMFRSLCRKNLVTWNAMITG-Y--ARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACS 380 (525)
Q Consensus 308 l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (525)
+..+|... +++++|...|+...+.++..+..+... + ...+++++|+++|++..+.| +......+...|.
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 66666544 688888888888774456677777776 3 45789999999999988855 4455555555555
Q ss_pred CCC-----CCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHhCCCCchhHHHHHHHHHhc-
Q 048766 381 HTD-----IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRELGFGSYGVVWRALLSASGA- 450 (525)
Q Consensus 381 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 450 (525)
.| + +++|.++|++.. .-++..+..|...|.. ..++++|...|++.-...++.....+...|..
T Consensus 295 -~G~g~~~d-~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 295 -EGKWVPAD-AKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQG 367 (452)
T ss_dssp -HCSSSCCC-HHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSC
T ss_pred -cCCCCCCC-HHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhC
Confidence 33 5 889999998775 3466777788888766 44899999999987333455666667766653
Q ss_pred ---CCChHHHHHHHHHHHhhcCCChhHHHHHHHH--HhhccChhHHHHHHHHHHHc
Q 048766 451 ---CSDLDVARISAAEVIKLEGDSDYVYVMLCNL--YTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 451 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+|+++|...|+++.+.++ +.+...+..+ ....++.++|..+.++..+.
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5699999999999999885 3344444444 34456788888888877664
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-16 Score=137.68 Aligned_cols=234 Identities=8% Similarity=-0.003 Sum_probs=193.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC--ch----HHHHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD--AS----IVVAS 306 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 306 (525)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356777888888999999999999888876 67788888888899999999999998888765311 11 57888
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCC
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLC--RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTD 383 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~ 383 (525)
.+..++...|++++|...++++. .++ ...+...|++++|+..++++.. ..|+ ...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 89999999999999999999886 344 2456677889999999999998 5564 567888888899999
Q ss_pred CCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
+ +++|.+.++++.+. .+.++..+..++..|.+.|++++|...++++ .. +.+...+..++..+...|++++|...+
T Consensus 154 ~-~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 D-WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp C-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C-HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9 99999999999864 2346788999999999999999999999987 32 344778889999999999999999999
Q ss_pred HHHHhhc------CCChhHHHHHHHH
Q 048766 462 AEVIKLE------GDSDYVYVMLCNL 481 (525)
Q Consensus 462 ~~~~~~~------p~~~~~~~~l~~~ 481 (525)
+++++.. |++..++..+..+
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999 8877777776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=137.34 Aligned_cols=241 Identities=7% Similarity=-0.165 Sum_probs=192.1
Q ss_pred hcCChhHHHHHHHHHhhCCCC---CCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 244 NRNRVPEALHLFGEMQSKDVP---MDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 244 ~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
..|++++|+..|+++.+.... .+..++..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457889999999998876321 135677788888899999999999999998876 5567888899999999999999
Q ss_pred HHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 321 ADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 321 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
|...|+++. +.+..++..+...|...|++++|+..++++.+ ..|+.......+..+...|+ +++|...++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 999999886 34677899999999999999999999999998 56765555555555666688 999999998887
Q ss_pred hhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-----GVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
.. .+++...+ .++..+...++.++|...+++. ...|. ...+..++..+...|++++|...++++++.+|++
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 64 23444444 4777888888999999999987 33332 4678889999999999999999999999999977
Q ss_pred hhHHHHHHHHHhhccChhHHHHHH
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
...+ +.++...|++++|++.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 5544 66788899999998876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-15 Score=143.86 Aligned_cols=373 Identities=9% Similarity=-0.010 Sum_probs=194.8
Q ss_pred HHHHHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCH---HHHHHHHhcCCCCCcccHHHHHHHHHhcC--
Q 048766 9 LLRASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSL---ADAHKMFVEIPQPSVVSWNSLISGYVQSG-- 83 (525)
Q Consensus 9 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-- 83 (525)
+...+.+.|++++|.++|....+.| ++..+..|...|...|+. ++|.+.|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556677888999999998888776 233344566666667777 88888888877666667777777555555
Q ss_pred ---ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChH---HHHHHHHHHHHcccCCCcchhhHHHHHHHhcC----
Q 048766 84 ---KYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQ---LGMAIHSKIVKYSLERGVVIANCLIDMYGKCG---- 153 (525)
Q Consensus 84 ---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 153 (525)
++++|+..|++..+.|. ...+..|...+...+... .+.+.+......| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67888888888887653 235566666665544433 3444444444433 3456666777777766
Q ss_pred CHHHHHHHHhhccCCChhhHHHHHHHHHhCC---ChHHHHHHHhcC---CCCCcchHHHHHHHHHhcCChHHHHHHHhcC
Q 048766 154 SVEDAIGVFGEMIDKDIISWNSVIAASARNG---NLELAFGFLHRL---PNPDTISYNEVINGIAQFGDIEDAIMILSSM 227 (525)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 227 (525)
+.+.+..+++.....++.++..+...|...| +.++|+..|++. .+++...+..+...|...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g------------- 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA------------- 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG-------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------
Confidence 3444555555555556666667777776666 666666666655 112222223333333222
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH-h--ccccchHHHHHHHHHHHHhCCCchHHH
Q 048766 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG-I--AGLSALTWGMLIHSCVIKQGLDASIVV 304 (525)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~ 304 (525)
....+++++|..+|++.. .| +...+..+... + ...+++++|...+++..+.| +...
T Consensus 227 --------------~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 227 --------------TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp --------------GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred --------------CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 000145566666666555 22 22333333333 2 33556666666666666555 3444
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHHHhccCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHHH
Q 048766 305 ASALLDMYSKCG-----QVEIADSMFRSLCRKNLVTWNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 305 ~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (525)
...+..+|. .| ++++|.+.|++....++..+..|...|.. ..++++|..+|++..+.| .|+. ...+
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A--~~~L 360 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSA--DFAI 360 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTH--HHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHH--HHHH
Confidence 445555555 33 77777777777663355566666666655 337777777777777655 2332 3333
Q ss_pred HHHHcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 376 LAACSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 376 ~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
...|.. ..+ .++|..+|+...+. | .++.......+......++..+|..+.++.
T Consensus 361 g~~y~~G~g~~~d-~~~A~~~~~~A~~~-g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 361 AQLFSQGKGTKPD-PLNAYVFSQLAKAQ-D-TPEANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHSCTTBCCC-HHHHHHHHHHHHTT-C-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCC-HHHHHHHHHHHHHC-C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333332 234 67777777777654 4 233332333333334455666676666654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-17 Score=163.48 Aligned_cols=125 Identities=13% Similarity=0.180 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCC-------CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHH
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIP-------QPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTS 109 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 109 (525)
-..+|++||++||+.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997753 49999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCh-HHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHH
Q 048766 110 ALAACGQLGSL-QLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGV 161 (525)
Q Consensus 110 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 161 (525)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999985 78999999999999999999999998776665444433333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-14 Score=122.89 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=161.8
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (525)
+.+...+..+...+...|++++|.+.++.+. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 3456667777888888888888888888765 3456678888888889999999999999888732 2356777888
Q ss_pred HHHHcCC-CCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcC
Q 048766 376 LAACSHT-DIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGAC 451 (525)
Q Consensus 376 ~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~ 451 (525)
...+... |+ +++|.+.++++.+. +..|+ ...+..++..+...|++++|+..++++ ... .+...+..++..+...
T Consensus 83 ~~~~~~~~~~-~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNR-PAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCC-HHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCc-HHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 8888888 88 99999999888762 33443 567888888999999999999999886 222 3467788888889999
Q ss_pred CChHHHHHHHHHHHhhcC-CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 452 SDLDVARISAAEVIKLEG-DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
|++++|...++++++..| +++..+..++..+...|+.++|..+++.+.+..+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999999999999999999 8889898888889999999999999988876644
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-14 Score=133.83 Aligned_cols=244 Identities=11% Similarity=0.024 Sum_probs=193.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc-hHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 048766 233 SSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA-LTWGMLIHSCVIKQGLDASIVVASALLDM 311 (525)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (525)
..|..+...+.+.|++++|+..+++.+... +-+...|..+..++...|+ +++|+..++++++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 357777888888899999999999888753 3456777888888888886 999999998888877 5577788888888
Q ss_pred HHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcC-CCCCc
Q 048766 312 YSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSH-TDIPF 386 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~~~~~ 386 (525)
+...|++++|...|+++. +.+...|..+..++...|++++|+..++++.+ ..| +...|+.+..++.. .|. .
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~-~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGY-N 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCS-C
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCc-c
Confidence 999999999999998886 45677888899999999999999999999998 566 46778888888877 444 5
Q ss_pred chH-----HHHHHHhhhhhCCCC-ChhHHHHHHHHHhccC--ChHHHHHHHHHhCCCCc-hhHHHHHHHHHhcCC-----
Q 048766 387 DKV-----SEYFESMTKDYGIKP-TVEHCCSMIRLMGQKG--EVWRAQRMIRELGFGSY-GVVWRALLSASGACS----- 452 (525)
Q Consensus 387 ~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~----- 452 (525)
++| ++.+++..+. .| +...|..+..++...| ++++|++.++++...|+ ...+..++..+.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 788 4778887753 45 4677888888888888 68899998888844444 566777777777653
Q ss_pred ---C-hHHHHHHHHHH-HhhcCCChhHHHHHHHHHhhc
Q 048766 453 ---D-LDVARISAAEV-IKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 453 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 485 (525)
+ +++|+++++++ .+.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899998888888888776554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=123.98 Aligned_cols=189 Identities=12% Similarity=0.011 Sum_probs=120.9
Q ss_pred HHHHHHHHHHc----CCCHHHHHHHHHhcc-CCCHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHH
Q 048766 304 VASALLDMYSK----CGQVEIADSMFRSLC-RKNLVTWNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLN 374 (525)
Q Consensus 304 ~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 374 (525)
.+..+...|.. .+++++|...|++.. ..+...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 115 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHH
Confidence 33444444555 555555555555544 2244555556666666 666677777766666632 4455555
Q ss_pred HHHHHcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHhCCCCchhHHHHHHH
Q 048766 375 VLAACSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRELGFGSYGVVWRALLS 446 (525)
Q Consensus 375 l~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 446 (525)
+...+.. .++ +++|.+.+++..+. + +...+..+...|.. .+++++|+..+++.-...+...+..+..
T Consensus 116 lg~~~~~~~~~~~~-~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 190 (273)
T 1ouv_A 116 LGGIYHDGKVVTRD-FKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGN 190 (273)
T ss_dssp HHHHHHHCSSSCCC-HHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCCcccC-HHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6556655 666 77777777766653 2 44556666666666 6777777777776511234556666777
Q ss_pred HHhc----CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh----ccChhHHHHHHHHHHHcCC
Q 048766 447 ASGA----CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS----HGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 447 ~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 503 (525)
.+.. .+++++|+..++++++.+| +.++..++.+|.. .+++++|...+++..+.|.
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7777 7788888888888777765 6677777888877 7788888888887777665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-14 Score=126.38 Aligned_cols=198 Identities=10% Similarity=-0.034 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
...+..+...+...|++++|.+.++++. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence 4566677777778888888888887765 3456677778888888888888888888887732 2256677777788
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLD 455 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~ 455 (525)
+...|+ +++|.++++++.+. +..| +...+..++..|...|++++|...++++ .. +.+...+..++..+...|+++
T Consensus 115 ~~~~g~-~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKR-YEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTC-HHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhH-HHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 888888 88888888888752 2444 4567777888888888888888888876 22 234667778888888888888
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 456 VARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+|...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 888888888888888888888888888888888888888888877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-14 Score=133.04 Aligned_cols=227 Identities=10% Similarity=0.087 Sum_probs=194.7
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC-HHHHHHHHHhcc---CCCHhHHHHHHHH
Q 048766 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ-VEIADSMFRSLC---RKNLVTWNAMITG 342 (525)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~ 342 (525)
...|..+..++...|++++|+..++.+++.. +.+..++..+..++...|+ +++|+..|+++. +.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456777778889999999999999999987 6678889999999999997 999999999987 4567899999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhc-c
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQ-K 419 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~ 419 (525)
+...|++++|+..|+++.+ ..| +...|..+..++...|+ +++|++.++++.+. .| +...|+.++.+|.+ .
T Consensus 176 ~~~~g~~~eAl~~~~kal~---ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999 666 57888899999999999 99999999999864 55 57889999999999 6
Q ss_pred CChHHH-----HHHHHHh-CCCC-chhHHHHHHHHHhcCC--ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc----
Q 048766 420 GEVWRA-----QRMIREL-GFGS-YGVVWRALLSASGACS--DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG---- 486 (525)
Q Consensus 420 g~~~~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---- 486 (525)
|..++| +..+++. ...| +...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence 665887 4777775 3344 4678888888888888 699999999998 889999999999999999975
Q ss_pred -----ChhHHHHHHHHH-HHcC
Q 048766 487 -----NWDVASVMRNFM-RERG 502 (525)
Q Consensus 487 -----~~~~A~~~~~~~-~~~~ 502 (525)
.+++|+.+++++ .+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 5543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=130.01 Aligned_cols=170 Identities=9% Similarity=0.004 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCC
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD 383 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 383 (525)
.+...+...|++++|...++.+. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhc
Confidence 33333444444444444443332 1233344444445555555555555555554421 123344444444455555
Q ss_pred CCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 384 IPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
+ +++|.+.++++.+. .+.+...+..++..|.+.|++++|...++++ . .+.+...+..++..+...|++++|...+
T Consensus 140 ~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 140 Q-PKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp C-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred c-HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5 55555555554432 1223444444555555555555555555543 1 1122344455555555555555555555
Q ss_pred HHHHhhcCCChhHHHHHHHH
Q 048766 462 AEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 462 ~~~~~~~p~~~~~~~~l~~~ 481 (525)
+++++..|+++.++..++.+
T Consensus 217 ~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 217 DKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHccCcchHHHHHHHHHH
Confidence 55555555555555544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-15 Score=128.70 Aligned_cols=200 Identities=9% Similarity=0.049 Sum_probs=157.1
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHH
Q 048766 300 ASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVL 376 (525)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 376 (525)
.....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHH
Confidence 345566677788888999999999998886 3466788889999999999999999999999842 33578888889
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCCh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDL 454 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~ 454 (525)
..+...|+ +++|.++++++.+. .+.+...+..++..|.+.|++++|...++++ . .+.+...+..++..+...|++
T Consensus 99 ~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEM-YKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcc-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 99999999 99999999999864 2446788899999999999999999999987 2 234577888899999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
++|+..++++++..|+++.++..++.++...|++++|...++++.+..+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 99999999999999999999999999999999999999999999887553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=120.30 Aligned_cols=166 Identities=13% Similarity=0.050 Sum_probs=142.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC 410 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 410 (525)
+...|..+...|...|++++|++.|++..+ ..| +...+..+...+...|+ +++|...++..... .+.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK---ADPNNVETLLKLGKTYMDIGL-PNDAIESLKKFVVL--DTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc--CchhHHHHH
Confidence 556788889999999999999999999888 566 46778888888889998 99999999888753 233566777
Q ss_pred HHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
.++..+...++++.|...+++. . .+.+...+..++..+...|++++|++.|+++++.+|+++.++..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8888889999999999999886 2 2344677888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCC
Q 048766 489 DVASVMRNFMRERGL 503 (525)
Q Consensus 489 ~~A~~~~~~~~~~~~ 503 (525)
++|+..|++..+..+
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999987654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=121.96 Aligned_cols=202 Identities=14% Similarity=0.030 Sum_probs=145.0
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcC
Q 048766 271 STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNG 347 (525)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 347 (525)
..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.++++. +.+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333334444444444444444444433 3344555666666667777777777776654 335567777788888888
Q ss_pred ChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHH
Q 048766 348 DLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (525)
++++|++.++++.+.+ ..| +...+..+...+...|+ +++|.+.++++.+. .+.+...+..++..|...|++++|.
T Consensus 120 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDT-LYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp CHHHHHHHHHHHTTCT-TCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCc-cCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887733 445 45667777888888888 99999999888764 2335778888999999999999999
Q ss_pred HHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 427 RMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 427 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
..++++ ... .+...+..+...+...|++++|.+.++++++..|+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999987 333 446677788888899999999999999999999988776543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-14 Score=127.43 Aligned_cols=229 Identities=8% Similarity=-0.025 Sum_probs=188.2
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--CCH----hHHHHHHH
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--KNL----VTWNAMIT 341 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~ 341 (525)
..+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++.+.. ++. .+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999999876 44566788888999999999999999998864 232 34888999
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhcc
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQK 419 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 419 (525)
.+...|++++|++.+++..+ ..| +...+..+...+...|+ +++|.+.+++..+ ..| +...+..++..+...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999998 445 46788899999999999 9999999999985 344 567777888344455
Q ss_pred CChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCC---hHHHHHHHHHHHhhc---CCC-----hhHHHHHHHHHhhcc
Q 048766 420 GEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSD---LDVARISAAEVIKLE---GDS-----DYVYVMLCNLYTSHG 486 (525)
Q Consensus 420 g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g 486 (525)
+++++|.+.++++ ...|+ ...+..++..+...|+ +++|+..++++++.. |+. ..++..++.+|...|
T Consensus 156 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 6999999999987 33344 6677778888877787 899999999999876 532 257889999999999
Q ss_pred ChhHHHHHHHHHHHcCCc
Q 048766 487 NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~ 504 (525)
++++|...++++.+..+.
T Consensus 236 ~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPT 253 (272)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHhcCcc
Confidence 999999999999987654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=123.86 Aligned_cols=182 Identities=14% Similarity=0.021 Sum_probs=102.2
Q ss_pred HhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhc------
Q 048766 276 GIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARN------ 346 (525)
Q Consensus 276 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~------ 346 (525)
.+...|++++|...++...+.. +.+...+..+..++.+.|++++|...+++.. +.+...+..+...+...
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 3333333333333333333332 3334444444555555555555555555443 22344555555555555
Q ss_pred -----CChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC
Q 048766 347 -----GDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG 420 (525)
Q Consensus 347 -----~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 420 (525)
|++++|+..+++..+ ..|+ ...+..+...+...|+ +++|++.|+++.+. . .++..+..++.+|...|
T Consensus 93 ~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGE-RDKAEASLKQALAL-E--DTPEIRSALAELYLSMG 165 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHT
T ss_pred hcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcC
Confidence 778888888887777 4554 5666677777777777 88888888887765 3 56777777888888888
Q ss_pred ChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 421 EVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 421 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
++++|+..++++ ...| +...+..+...+...|++++|+..++++.
T Consensus 166 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888776 2233 45667777777788888888888777653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=140.77 Aligned_cols=207 Identities=8% Similarity=-0.082 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH-HHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 048766 283 LTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV-EIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQ 358 (525)
Q Consensus 283 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (525)
++++...+....... +.+...+..+..++...|++ ++|++.|++.. +.+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443332 44667777788888888888 88888888775 34577899999999999999999999999
Q ss_pred HhhCCCCCCCHhHHHHHHHHHcCC---------CCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhcc--------C
Q 048766 359 LKTVRDLQPDSVTFLNVLAACSHT---------DIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQK--------G 420 (525)
Q Consensus 359 ~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------g 420 (525)
..+ ..|+...+..+...+... |+ +++|.+.++++.+. .| +...|..++.+|... |
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 998 678888888899999998 88 99999999999864 44 578899999999998 9
Q ss_pred ChHHHHHHHHHh-CCCC----chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHH
Q 048766 421 EVWRAQRMIREL-GFGS----YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMR 495 (525)
Q Consensus 421 ~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (525)
++++|+..|++. ...| +...|..++..+...|++++|++.|+++++++|+++.++..++.++...|++++|++.+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 4345 57889999999999999999999999999999999999999999999999999999765
Q ss_pred HH
Q 048766 496 NF 497 (525)
Q Consensus 496 ~~ 497 (525)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-16 Score=155.34 Aligned_cols=146 Identities=10% Similarity=0.088 Sum_probs=117.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCC-------CCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 048766 202 ISYNEVINGIAQFGDIEDAIMILSSMP-------SPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTML 274 (525)
Q Consensus 202 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 274 (525)
.+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 478888999999999999999986643 5999999999999999999999999999999999999999999999
Q ss_pred HHhccccch-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-----CHhHHHHHHHHHHhcC
Q 048766 275 SGIAGLSAL-TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-----NLVTWNAMITGYARNG 347 (525)
Q Consensus 275 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 347 (525)
.++++.|+. +.|..++++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ ...+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999987766654444443333222211 1234444555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-13 Score=120.69 Aligned_cols=225 Identities=10% Similarity=-0.010 Sum_probs=183.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHhCCCchHHHHH
Q 048766 231 NSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG----LSALTWGMLIHSCVIKQGLDASIVVAS 306 (525)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 306 (525)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456677778888888889999888888873 355667777777887 888999999998888876 566777
Q ss_pred HHHHHHHc----CCCHHHHHHHHHhcc-CCCHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHH
Q 048766 307 ALLDMYSK----CGQVEIADSMFRSLC-RKNLVTWNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLA 377 (525)
Q Consensus 307 ~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 377 (525)
.+..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHHH
Confidence 88888888 999999999998886 3467788889999998 999999999999999844 4556666767
Q ss_pred HHcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHh-CCCCchhHHHHHHHHH
Q 048766 378 ACSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIREL-GFGSYGVVWRALLSAS 448 (525)
Q Consensus 378 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~ 448 (525)
.+.. .++ +++|.+.+++..+. .++..+..+...|.. .+++++|+..+++. ... +...+..+...+
T Consensus 155 ~~~~~~~~~~~-~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKD-LKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCC-HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 7766 787 99999999998764 356778889999999 99999999999987 322 367778888888
Q ss_pred hc----CCChHHHHHHHHHHHhhcCCC
Q 048766 449 GA----CSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 449 ~~----~~~~~~A~~~~~~~~~~~p~~ 471 (525)
.. .+++++|++.++++.+.+|++
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 88 999999999999999999844
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-11 Score=122.02 Aligned_cols=429 Identities=9% Similarity=0.051 Sum_probs=286.1
Q ss_pred hhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCC---hHHHHHHH
Q 048766 19 DTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---PSVVSWNSLISGYVQSGK---YRKALNLF 92 (525)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~---~~~A~~~~ 92 (525)
..+....++..+..+ +-|...|..++..+.+.+.++.+..+|+.+.. .+...|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455667776666 78999999999999999999999999998876 345578888888888888 99999999
Q ss_pred HHHHhcC-CCCCHhhHHHHHHHHcccCCh--------HHHHHHHHHHHH-ccc-CC-CcchhhHHHHHHHh---------
Q 048766 93 VELERSE-IYADAYSFTSALAACGQLGSL--------QLGMAIHSKIVK-YSL-ER-GVVIANCLIDMYGK--------- 151 (525)
Q Consensus 93 ~~m~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--------- 151 (525)
++..... ..|+...|...+....+.++. +.+.++|+..+. .|. .+ +..+|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 138888888877766555443 334577776654 355 44 34677777765442
Q ss_pred cCCHHHHHHHHhhccCCCh----hhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhc-
Q 048766 152 CGSVEDAIGVFGEMIDKDI----ISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS- 226 (525)
Q Consensus 152 ~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~- 226 (525)
.++.+.+..+|+..+.-.. ..|......-...+. ..+.+++.+. ..+++.|...+.+
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHHHH
Confidence 3456778889988865211 122221111000010 0111111110 0111122222211
Q ss_pred ------CCC--------------C--C------cccHHHHHHHHHhcC-------ChhHHHHHHHHHhhCCCCCCHHHHH
Q 048766 227 ------MPS--------------P--N------SSSWNSILTGYVNRN-------RVPEALHLFGEMQSKDVPMDEYTFS 271 (525)
Q Consensus 227 ------~~~--------------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~ 271 (525)
+.+ | + ...|...+..--..+ ..+.+..+|++.+.. ++-....|.
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~ 347 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWF 347 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHH
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHH
Confidence 110 0 0 123444444333322 123456678887765 455777888
Q ss_pred HHHHHhccccchHHHH-HHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-------------CC-----
Q 048766 272 TMLSGIAGLSALTWGM-LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR-------------KN----- 332 (525)
Q Consensus 272 ~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~----- 332 (525)
..+.-+...|+.+.|. .+++...... |.+...+...+....+.|+++.|.++|+.+.. |+
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 8888888888888896 9999998754 56777788888889999999999999988763 21
Q ss_pred -------HhHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC
Q 048766 333 -------LVTWNAMITGYARNGDLTKVIELFEQLKTV-RDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404 (525)
Q Consensus 333 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 404 (525)
...|...+....+.|+.+.|..+|.++.+. + .+....|...+..-.+.+++.+.|.++|+...+. .+.
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~ 502 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK--LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG--GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTT
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCC
Confidence 236888888888899999999999999885 2 1223334333333223332289999999999875 344
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC----chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS----YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
++..+...++.....|+.+.|..+|++. ...| ....|..++..-.+.|+.+.+..+.+++.+..|+++
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 5667778888888999999999999997 3333 346788888888889999999999999999999764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=118.01 Aligned_cols=205 Identities=10% Similarity=-0.043 Sum_probs=150.4
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHh
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYAR 345 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 345 (525)
.+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++.+. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444445555555555555555555443 3345566666777777777777777777664 3456677788888888
Q ss_pred c-CChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChH
Q 048766 346 N-GDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVW 423 (525)
Q Consensus 346 ~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (525)
. |++++|+..++++.+.+ ..|+ ...+..+...+...|+ +++|.+.++++.+. .+.+...+..++..|.+.|+++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADP-TYPTPYIANLNKGICSAKQGQ-FGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp TTCCHHHHHHHHHHHHTST-TCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred hcCcHHHHHHHHHHHHcCc-CCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence 8 99999999999888733 3443 5677788888888898 99999999988764 2335778888999999999999
Q ss_pred HHHHHHHHh-CCC--CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 424 RAQRMIREL-GFG--SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 424 ~A~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
+|...++++ ... .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999886 222 3456667777778889999999999999999999888776544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=137.32 Aligned_cols=265 Identities=10% Similarity=-0.023 Sum_probs=193.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHhccccchHHHHHHHHHHHHh----C-CCchHHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMDE----YTFSTMLSGIAGLSALTWGMLIHSCVIKQ----G-LDASIVVA 305 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 305 (525)
+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...++++.+. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445566777788888888888777652 2222 35666777777788888888877776553 1 12345667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhccCC---------CHhHHHHHHHHHHhcCC-----------------hhHHHHHHHHH
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLCRK---------NLVTWNAMITGYARNGD-----------------LTKVIELFEQL 359 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 359 (525)
..+...|...|++++|...+++.... ...++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77888888888888888888776421 23467778888888888 88888888876
Q ss_pred hhCCC---CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHH
Q 048766 360 KTVRD---LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIRE 431 (525)
Q Consensus 360 ~~~~~---~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (525)
.+... ..| ...++..+...+...|+ +++|.+.+++..+...-.++ ...+..++..|...|++++|...+++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 55210 112 23467778888888998 99999999888754211112 23678889999999999999999987
Q ss_pred h----C-CC---CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC------ChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 432 L----G-FG---SYGVVWRALLSASGACSDLDVARISAAEVIKLEGD------SDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 432 ~----~-~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
. + .. .....+..++..+...|++++|...++++++..+. ...++..++.+|...|++++|..++++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 1 11 11456778888999999999999999999987532 245788999999999999999999998
Q ss_pred HHHc
Q 048766 498 MRER 501 (525)
Q Consensus 498 ~~~~ 501 (525)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-14 Score=127.60 Aligned_cols=220 Identities=12% Similarity=0.027 Sum_probs=182.1
Q ss_pred hccccchHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChh
Q 048766 277 IAGLSALTWGMLIHSCVIKQGL---DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLT 350 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 350 (525)
....|++++|...++.+.+... +.+..++..+..++...|++++|...|+++. +.+..+|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4466899999999999988642 2356788899999999999999999999986 456789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHH
Q 048766 351 KVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMI 429 (525)
Q Consensus 351 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (525)
+|+..++++.+ ..| +...+..+...+...|+ +++|.+.++++.+. .|+..........+...|++++|...+
T Consensus 95 ~A~~~~~~al~---~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 95 AAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHH---HCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHh---cCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999 455 57788899999999999 99999999999854 565555555556667789999999999
Q ss_pred HHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC----ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 430 REL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD----SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 430 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++. ...|+......++..+...++.++|+..++++++..|. ++.++..++.+|...|++++|...++++.+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 168 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 776 22233333344777778888999999999999987763 378899999999999999999999999988754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-14 Score=135.05 Aligned_cols=127 Identities=14% Similarity=-0.063 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc----hh
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY----GV 439 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~ 439 (525)
+..+...+...|+ +++|.+.+++..+...-.++ ...+..++..|...|++++|...+++. +..++ ..
T Consensus 190 ~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 190 FGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHTB-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3444444444444 55555555444332111111 123444445555555555555555443 00000 22
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC------hhHHHHHHHHHhhccChhHHHHHHHHHH
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDS------DYVYVMLCNLYTSHGNWDVASVMRNFMR 499 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (525)
++..++..+...|++++|...++++++..+.. ..++..++.+|...|++++|..++++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555555555443211 3344455555555555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-14 Score=129.59 Aligned_cols=266 Identities=12% Similarity=0.006 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHhccccchHHHHHHHHHHHHh----CCC-chHHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSKDVPMD----EYTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD-ASIVVA 305 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 305 (525)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+....+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566777888888888888877653 222 245666777777888888888887776543 212 235567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCC--------------------hhHHHHHH
Q 048766 306 SALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGD--------------------LTKVIELF 356 (525)
Q Consensus 306 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 356 (525)
..+...+...|++++|...+++... ++ ..++..+...+...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7788888899999999888887641 22 2367778888888888 89999888
Q ss_pred HHHhhCCC---CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHH
Q 048766 357 EQLKTVRD---LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRM 428 (525)
Q Consensus 357 ~~~~~~~~---~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 428 (525)
++...... ..| ....+..+...+...|+ +++|.+.+++..+...-.++ ...+..++..|...|++++|...
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87654210 112 13467777788888898 99999999988753211122 33778889999999999999999
Q ss_pred HHHh----CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC------hhHHHHHHHHHhhccChhHHHHH
Q 048766 429 IREL----GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDS------DYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 429 ~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
+++. +..++ ...+..++..+...|++++|...++++++..|.. ..++..++.+|...|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9876 11111 4567778889999999999999999999876422 45788999999999999999999
Q ss_pred HHHHHHcC
Q 048766 495 RNFMRERG 502 (525)
Q Consensus 495 ~~~~~~~~ 502 (525)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99988754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=135.96 Aligned_cols=255 Identities=12% Similarity=0.038 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHhC----CC-chHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSK----DVPM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQG----LD-ASIVV 304 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~ 304 (525)
+..+...+...|++++|...+++.... +..| ...++..+...+...|++++|...+....+.. .+ ....+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 444445555555555555555543321 1111 12334444555555556666555555544321 01 11335
Q ss_pred HHHHHHHHHcCCC--------------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHhcCChhHHHHH
Q 048766 305 ASALLDMYSKCGQ--------------------VEIADSMFRSLCR-----K----NLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 305 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+..+...|...|+ ++.|...+++... . ...++..+...|...|++++|+..
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5566666666677 6667666665531 1 123677778888888999999988
Q ss_pred HHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHH
Q 048766 356 FEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQR 427 (525)
Q Consensus 356 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 427 (525)
+++..+.....++ ..++..+...+...|+ +++|...+++..+...-.++ ..++..++..|...|++++|..
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 8887653101122 2367778888888898 99999999887653211112 5577888999999999999999
Q ss_pred HHHHh----CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHhhccChhH
Q 048766 428 MIREL----GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 428 ~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
.+++. +..++ ..++..++..+...|++++|...++++++.. |....++..++.++...|+...
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99876 11111 4567788899999999999999999999874 3335678889999999987743
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-11 Score=119.83 Aligned_cols=416 Identities=8% Similarity=0.005 Sum_probs=261.2
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCC---hHHHHHHHHHHHHcc-cCCCcchh
Q 048766 67 PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGS---LQLGMAIHSKIVKYS-LERGVVIA 142 (525)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 142 (525)
.|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.+..+|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46677888888887788888888888888775 34556667777777777777 888888888877653 13677777
Q ss_pred hHHHHHHHhcCCH--------HHHHHHHhhcc------CC-ChhhHHHHHHHHHh---------CCChHHHHHHHhcCCC
Q 048766 143 NCLIDMYGKCGSV--------EDAIGVFGEMI------DK-DIISWNSVIAASAR---------NGNLELAFGFLHRLPN 198 (525)
Q Consensus 143 ~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 198 (525)
...+....+.++. +...++|+... .+ +...|...+..... .++.+.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7776655554443 22335555532 22 23455555544332 2234556666666532
Q ss_pred -CCc---chHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh--CCC----C----
Q 048766 199 -PDT---ISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS--KDV----P---- 264 (525)
Q Consensus 199 -~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~----~---- 264 (525)
|.. .+|......-...+ ...+.+++.+ ...+++.|...+.++.. .++ +
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVN-QLTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred CccHHHHHHHHHHHHHHHhcC-cchHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 211 12211111100000 0001111110 11233444444444321 011 1
Q ss_pred -------C-----CH---HHHHHHHHHhcccc-------chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHH
Q 048766 265 -------M-----DE---YTFSTMLSGIAGLS-------ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIAD 322 (525)
Q Consensus 265 -------~-----~~---~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 322 (525)
| +. ..|...+.---..+ ..+.+..+|++++... +....+|...+..+...|+.+.|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 11 22333332221211 1334567788887764 557788888888888899998996
Q ss_pred -HHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCC--------CCCCC------------HhHHHHHHHH
Q 048766 323 -SMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVR--------DLQPD------------SVTFLNVLAA 378 (525)
Q Consensus 323 -~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~p~------------~~~~~~l~~~ 378 (525)
.+++... +.+...|-..+....+.|+++.|.++|+++.+.. .-.|+ ...|...+..
T Consensus 364 r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 364 TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9998876 4466677888888889999999999999988631 00142 2357777777
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc-CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK-GEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLD 455 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 455 (525)
..+.|+ .+.|.++|..+.+. .-......|...+..-.+. ++++.|.++|+.. ..+.+...|..++......|+.+
T Consensus 444 erR~~~-l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQG-LAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHC-HHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCC-HHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 777788 99999999999763 1122344454444444454 4599999999986 32334566777888778889999
Q ss_pred HHHHHHHHHHhhcCC---ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 456 VARISAAEVIKLEGD---SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 456 ~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.|..+|++++...|+ ....|..++..-...|+.+.+..+.+++.+..+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999998873 4567888888889999999999999999988764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-13 Score=127.11 Aligned_cols=227 Identities=10% Similarity=0.010 Sum_probs=159.0
Q ss_pred HHHHhccccchHHHHHHHHHHHHh----CCCc-hHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CC-----HhHHH
Q 048766 273 MLSGIAGLSALTWGMLIHSCVIKQ----GLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCR-----KN-----LVTWN 337 (525)
Q Consensus 273 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 337 (525)
....+...|++++|...+....+. +.++ ...++..+..+|...|+++.|...+++... ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666777777777666553 1111 345667777778888888888777776641 11 23677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh---CC-CCChhHH
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY---GI-KPTVEHC 409 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~ 409 (525)
.+...|...|++++|++.+++..+.....++ ..++..+...+...|+ +++|.+.+++..+.. +. +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 7888888899999999888887653101112 2467778888888898 999999988877521 11 2235678
Q ss_pred HHHHHHHhccCChHHHHHHHHHh----C--CCCc-hhHHHHHHHHHhcCCC---hHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL----G--FGSY-GVVWRALLSASGACSD---LDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~----~--~~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
..++..|.+.|++++|...+++. . ..|. ...+..+...+...|+ +++|+..+++. ...|.....+..++
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 88899999999999999999875 1 1222 2335667778888888 77777777776 33344566788999
Q ss_pred HHHhhccChhHHHHHHHHHHHc
Q 048766 480 NLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+|...|++++|..++++..+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=131.59 Aligned_cols=234 Identities=12% Similarity=0.024 Sum_probs=149.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHHHHHHHHHhccccchHHHHHHHHHHHHh----C-CCchHHH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSK----DV-PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ----G-LDASIVV 304 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 304 (525)
|..+...|...|++++|...+++..+. +. +.....+..+...+...|++++|...+.++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 334444444444444444444443321 10 111233444445555555555555555554432 1 1223345
Q ss_pred HHHHHHHHHcCCC-----------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 048766 305 ASALLDMYSKCGQ-----------------VEIADSMFRSLCR-----K----NLVTWNAMITGYARNGDLTKVIELFEQ 358 (525)
Q Consensus 305 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (525)
+..+...|...|+ ++.|.+.+++... . ...++..+...|...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5666666777777 6777666665531 1 123677788888889999999999888
Q ss_pred HhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC----ChhHHHHHHHHHhccCChHHHHHHHH
Q 048766 359 LKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP----TVEHCCSMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 359 ~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (525)
..+.....++ ...+..+...+...|+ +++|.+.+++..+...-.. ....+..++..|...|++++|...++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7762100112 2367788888899998 9999999988765421111 15677888999999999999999998
Q ss_pred Hh-------CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 431 EL-------GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 431 ~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
+. +..+ ....+..+...+...|++++|...+++++++.+
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 76 1111 134677888999999999999999999999876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-13 Score=111.08 Aligned_cols=166 Identities=11% Similarity=0.033 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVL 376 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 376 (525)
+..+|..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..+++... ..| +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHH
Confidence 45677888888888899999998888876 44677888899999999999999999999888 445 456666777
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCCh
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDL 454 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~ 454 (525)
..+...++ ++.+.+.+.+..+. .+.+...+..++..|.+.|++++|++.|++. ... .+..+|..++..+.+.|++
T Consensus 81 ~~~~~~~~-~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDE-KQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 77888888 99999999988753 2345778889999999999999999999987 333 4467889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCh
Q 048766 455 DVARISAAEVIKLEGDSD 472 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~ 472 (525)
++|++.|+++++.+|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999999654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=116.69 Aligned_cols=217 Identities=10% Similarity=0.056 Sum_probs=111.9
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc-------ccch-------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Q 048766 249 PEALHLFGEMQSKDVPMDEYTFSTMLSGIAG-------LSAL-------TWGMLIHSCVIKQGLDASIVVASALLDMYSK 314 (525)
Q Consensus 249 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (525)
++|..+|++..... +-+...|..++..+.. .|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777666542 3445555555555432 3443 5666666666553113344455556666666
Q ss_pred CCCHHHHHHHHHhccC--C-CHh-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH-cCCCCCcchH
Q 048766 315 CGQVEIADSMFRSLCR--K-NLV-TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC-SHTDIPFDKV 389 (525)
Q Consensus 315 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~a 389 (525)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+ +++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~-~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKD-KSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCC-HHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 6666666666665542 2 222 55555555556666666666666665522 11222332222221 12354 5666
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C---CCCc--hhHHHHHHHHHhcCCChHHHHHHHHH
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G---FGSY--GVVWRALLSASGACSDLDVARISAAE 463 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 463 (525)
.++|++..+.. +.++..|..++..+.+.|++++|..+|++. . .+|+ ...|..++....+.|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666555431 223455555555555556666666666554 1 1332 33455555555555666666666666
Q ss_pred HHhhcCCC
Q 048766 464 VIKLEGDS 471 (525)
Q Consensus 464 ~~~~~p~~ 471 (525)
+++..|++
T Consensus 267 a~~~~p~~ 274 (308)
T 2ond_A 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHcccc
Confidence 66655543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-13 Score=133.84 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=141.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHC 409 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 409 (525)
+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...+..+..++.+.|+ +++|++.|+++.+. .| +...|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~-~~eA~~~~~~Al~l---~P~~~~a~ 80 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGK-LQEALMHYKEAIRI---SPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHH
Confidence 345788888888899999999999999888 6675 6778888888888998 99999999988853 55 47788
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..++.+|.+.|++++|++.|++. ...|+ ...+..++..+...|++++|++.|+++++++|+++.++..++.++...|+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88999999999999999999886 33444 67889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHc
Q 048766 488 WDVASVMRNFMRER 501 (525)
Q Consensus 488 ~~~A~~~~~~~~~~ 501 (525)
+++|.+.++++.+.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988663
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-13 Score=109.99 Aligned_cols=165 Identities=17% Similarity=0.021 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.+..+...+...|++++|+..++++.+.. +.+...+..+...+...|+ +++|.++++++.+. .+.+...+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGA-VDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 45566677777788888888888777632 2356667777777777887 88888888887753 2335677778888
Q ss_pred HHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHH
Q 048766 415 LMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 492 (525)
.+...|++++|.+.++++ ..+.+...+..++..+...|++++|...++++++..|+++.++..++.++...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888876 223456778888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCc
Q 048766 493 VMRNFMRERGLR 504 (525)
Q Consensus 493 ~~~~~~~~~~~~ 504 (525)
..++++.+..+.
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999998876543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=126.14 Aligned_cols=238 Identities=12% Similarity=0.135 Sum_probs=127.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYS 313 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (525)
++..+...+...|++++|..+++++.+... .......+....++..+...|.
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~~la~~~~ 80 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLE----------------------------KTSGHDHPDVATMLNILALVYR 80 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HHHCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------HHcCCCCHHHHHHHHHHHHHHH
Confidence 456666667777777777777766654200 0000011222333444444444
Q ss_pred cCCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCC-CHhHHHHH
Q 048766 314 KCGQVEIADSMFRSLCR-------K----NLVTWNAMITGYARNGDLTKVIELFEQLKTV------RDLQP-DSVTFLNV 375 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~p-~~~~~~~l 375 (525)
..|++++|...+++... + ...++..+...|...|++++|+..++++.+. + ..| ....+..+
T Consensus 81 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 159 (311)
T 3nf1_A 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQLNNL 159 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 45555555444444321 0 1234555556666666666666666665542 1 122 23455666
Q ss_pred HHHHcCCCCCcchHHHHHHHhhhhh-----CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-C---------CCCc--
Q 048766 376 LAACSHTDIPFDKVSEYFESMTKDY-----GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-G---------FGSY-- 437 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~~~-- 437 (525)
...+...|+ +++|.++++++.+.. +..| ....+..++..|...|++++|...++++ . ..+.
T Consensus 160 a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 160 ALLCQNQGK-YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 666777776 777777777665421 0012 2445666777777777777777777764 1 1111
Q ss_pred -----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 438 -----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 438 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
...+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|..++++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1122223334445667777788888888888888888999999999999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-11 Score=112.43 Aligned_cols=214 Identities=8% Similarity=0.035 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------cCCCH-------HHHHHHHHhccC---C-CHhHHHHHHHHHHh
Q 048766 284 TWGMLIHSCVIKQGLDASIVVASALLDMYS-------KCGQV-------EIADSMFRSLCR---K-NLVTWNAMITGYAR 345 (525)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 345 (525)
++|...|+++.+.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887765 566777777777665 35775 889999988763 2 45688888999999
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCH-h-HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHh-ccCCh
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDS-V-TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMG-QKGEV 422 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~-~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 422 (525)
.|++++|.++|+++.+ ..|+. . .|..+...+.+.|+ +++|.++|+++.+. .+++...|...+.... ..|++
T Consensus 112 ~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999988 66653 3 68888888888888 99999999998753 1234455544444322 36999
Q ss_pred HHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh---cCC-ChhHHHHHHHHHhhccChhHHHHHHH
Q 048766 423 WRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKL---EGD-SDYVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 423 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
++|..+|++. ..+.+...|..++..+.+.|++++|..+|+++++. .|+ +...|..++..+.+.|+.++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999886 22235677888888888899999999999999985 443 56788888999999999999999999
Q ss_pred HHHHcCCc
Q 048766 497 FMRERGLR 504 (525)
Q Consensus 497 ~~~~~~~~ 504 (525)
++.+..+.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 99887664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=121.20 Aligned_cols=201 Identities=12% Similarity=0.042 Sum_probs=125.5
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhC----CC-chHHHHHHHHHHHHcCCC--------------------HHHHHH
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQG----LD-ASIVVASALLDMYSKCGQ--------------------VEIADS 323 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 323 (525)
.+..+...+...|++++|...+.+..+.. .+ ....++..+...+...|+ ++.|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 34444444555555555555555443321 00 112245555556666666 666666
Q ss_pred HHHhccC-----C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHH
Q 048766 324 MFRSLCR-----K----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 324 ~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
.+++... . ...++..+...+...|++++|+..+++..+.....++ ..++..+...+...|+ +++|.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-FETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 6555431 1 1235666777788888888888888877652100111 2366677777888888 88888
Q ss_pred HHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhHHHHHHHHHhcCCChHHHH
Q 048766 391 EYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~ 458 (525)
+.+++..+...-.++ ...+..++..|...|++++|...+++. +..+. ..++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888877643211112 456778888899999999999998875 11111 346778888999999999999
Q ss_pred HHHHHHHhhcCC
Q 048766 459 ISAAEVIKLEGD 470 (525)
Q Consensus 459 ~~~~~~~~~~p~ 470 (525)
..+++++++.+.
T Consensus 324 ~~~~~a~~~~~~ 335 (338)
T 3ro2_A 324 HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 999999987763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-12 Score=120.34 Aligned_cols=230 Identities=12% Similarity=-0.017 Sum_probs=175.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCC-CCCC----HHHHHHHHHHhccccchHHHHHHHHHHHHhC--C----CchHHHHH
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQSKD-VPMD----EYTFSTMLSGIAGLSALTWGMLIHSCVIKQG--L----DASIVVAS 306 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 306 (525)
....+...|++++|...|++....- -.++ ..++..+...+...|+++.|...+.+..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5566778888999998888887631 1122 3567777788888899999988888876541 1 12245677
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC-CHhHH
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTV----RDLQP-DSVTF 372 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~p-~~~~~ 372 (525)
.+..+|...|++++|...+++..+ ++ ..++..+...|...|++++|++.+++..+. + ..| ...++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 888999999999999999988752 22 237888999999999999999999988762 2 224 35678
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhccCC---hHHHHHHHHHhCCCCc-hhHHHHHH
Q 048766 373 LNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQKGE---VWRAQRMIRELGFGSY-GVVWRALL 445 (525)
Q Consensus 373 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~ 445 (525)
..+...+...|+ +++|.+.+++..+...-..+ ...+..+...|...|+ +++|+.++++.+..|+ ...+..++
T Consensus 268 ~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGK-IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 888999999999 99999999988754211112 2335678889999999 8999999999854444 44677889
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcC
Q 048766 446 SASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..|...|++++|...++++++...
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-11 Score=110.71 Aligned_cols=258 Identities=12% Similarity=-0.027 Sum_probs=119.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHH----HHHHHHHHhccccchHHHHHHHHHHHHhCC---Cc--hHHHHHHHHHH
Q 048766 241 GYVNRNRVPEALHLFGEMQSKDVPMDEY----TFSTMLSGIAGLSALTWGMLIHSCVIKQGL---DA--SIVVASALLDM 311 (525)
Q Consensus 241 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 311 (525)
.+...|++++|...+++........+.. .+..+...+...|++++|...+.+...... .+ ...++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555544432111111 233333444455555555555555443210 11 11223344555
Q ss_pred HHcCCCHHHHHHHHHhccC----------C-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--C--CHhHHHHHH
Q 048766 312 YSKCGQVEIADSMFRSLCR----------K-NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQ--P--DSVTFLNVL 376 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~ 376 (525)
+...|++++|...+++... + ....+..+...+...|++++|...+++..+.. .. | ...++..+.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcHHHHHHHHHHH
Confidence 5556666666555555431 1 11234445555556666666666666554421 10 0 123344455
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHH-----HHHHHHhccCChHHHHHHHHHh-CCCCc-----hhHHHHHH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCC-----SMIRLMGQKGEVWRAQRMIREL-GFGSY-----GVVWRALL 445 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~ 445 (525)
..+...|+ +++|...+++......-......+. ..+..+...|++++|...+++. ...+. ...+..+.
T Consensus 182 ~~~~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHcCC-HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 55555565 6666666655543211111111111 1223345566666666666654 11111 11234455
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCC------ChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 446 SASGACSDLDVARISAAEVIKLEGD------SDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
..+...|++++|...++++++..+. ...++..++.++...|+.++|...+++..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555666666666666666554321 112445556666666666666666655543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-12 Score=109.49 Aligned_cols=189 Identities=8% Similarity=-0.081 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---C-CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---R-KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVL 376 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 376 (525)
+..+......+...|++++|...|+... + ++...+..+..++...|++++|++.+++..+ ..|+ ...+..+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHH
Confidence 3445555555555555555555555543 1 3444444455555555555555555555555 3443 34444555
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCCC-h-------hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc---hhHHHHH
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKPT-V-------EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY---GVVWRAL 444 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l 444 (525)
..+...|+ +++|.+.+++..+. .|+ . ..|..++..+...|++++|++.++++ ...|+ ...+..+
T Consensus 84 ~~~~~~~~-~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKN-NQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHccc-HHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 55555555 55555555555532 222 2 23444444455555555555555544 33333 2333444
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+..+.. .+...++++..+.+.++..+... .....+.+++|+.++++..+..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 444322 22333444444444333333222 223344459999999999887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=125.32 Aligned_cols=179 Identities=10% Similarity=-0.022 Sum_probs=157.0
Q ss_pred HHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCCh-hHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHH
Q 048766 318 VEIADSMFRSLC---RKNLVTWNAMITGYARNGDL-TKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 318 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
++.+.+.++... +.+...+..+...+...|++ ++|++.|++..+ ..|+ ...+..+...+...|+ +++|.+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~-~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK---LEPELVEAWNQLGEVYWKKGD-VTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 455666666554 34677899999999999999 999999999998 5664 7889999999999999 9999999
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhcc---------CChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcC--------CC
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQK---------GEVWRAQRMIREL-GFG-SYGVVWRALLSASGAC--------SD 453 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~--------~~ 453 (525)
|+++. .+.|+...+..++..|... |++++|+..++++ ... .+...|..++.++... |+
T Consensus 160 ~~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99998 4578888999999999999 9999999999987 333 3477888899999888 99
Q ss_pred hHHHHHHHHHHHhhcC---CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 454 LDVARISAAEVIKLEG---DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+++|+..|+++++.+| +++.++..++.+|...|++++|...|++..+..+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999 9999999999999999999999999999988654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-11 Score=106.59 Aligned_cols=206 Identities=12% Similarity=0.041 Sum_probs=162.0
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHH
Q 048766 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMI 340 (525)
Q Consensus 264 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 340 (525)
+.|+..+......+...|++++|...+....+...+++...+..+..++...|++++|...+++.. +.+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346678888889999999999999999999998854677777779999999999999999999986 33556889999
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCC-H-------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hhHH
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPD-S-------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VEHC 409 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 409 (525)
..|...|++++|+..+++..+ ..|+ . ..|..+...+...|+ +++|++.|+++.+ +.|+ +..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~---~~p~~~~~~~~ 156 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATD---VTSKKWKTDAL 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTT---SSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHh---cCCCcccHHHH
Confidence 999999999999999999998 5564 4 457777788889999 9999999999984 4665 5678
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
..++..|...|+. .++++ .. ..+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 157 ~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 157 YSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888888766543 33333 11 11223332222 234567999999999999999999988888776653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-13 Score=120.90 Aligned_cols=237 Identities=8% Similarity=0.021 Sum_probs=130.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHhhC------CC
Q 048766 201 TISYNEVINGIAQFGDIEDAIMILSSMPS--------P---NSSSWNSILTGYVNRNRVPEALHLFGEMQSK------DV 263 (525)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~ 263 (525)
..++..+...+...|++++|..+|+++.+ . ....+..+...|...|++++|...+++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788889999999999999999987653 1 1235667777788888888888888777653 11
Q ss_pred CC-CHHHHHHHHHHhccccchHHHHHHHHHHHHh------CC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhH
Q 048766 264 PM-DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQ------GL-DASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVT 335 (525)
Q Consensus 264 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 335 (525)
.| ...++..+...+...|++++|...+..+.+. +. +.... .
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------------------------------~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK-------------------------------Q 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH-------------------------------H
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH-------------------------------H
Confidence 11 2334444555555555555555555555432 11 11222 3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh------CC
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTV------RDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY------GI 402 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~------~~ 402 (525)
+..+...+...|++++|++.++++.+. + ..|+ ..++..+...+...|+ +++|.++++++.+.. ..
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP-DDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT-TCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCC
Confidence 444444555555555555555554442 1 1221 2344445555555555 555555555554310 00
Q ss_pred CCC-------hhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 403 KPT-------VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 403 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+. ...+..+...+...+.+.+|...++.. ...| ...++..++..|...|++++|.+.+++++++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 111222333344556666666667665 2233 3567888899999999999999999999998874
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-11 Score=115.81 Aligned_cols=222 Identities=9% Similarity=0.005 Sum_probs=141.7
Q ss_pred hccccchHHHHHHHHHHHHhC--CC---chHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CC-----HhHHHHHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQG--LD---ASIVVASALLDMYSKCGQVEIADSMFRSLCR-----KN-----LVTWNAMIT 341 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~ 341 (525)
+...|++++|...+..+.+.. .+ ....++..+..+|...|+++.|...+++... ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445556666666665554431 11 1234556666677777777777766666531 11 235667777
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh---CCCCChhHHHHHHH
Q 048766 342 GYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY---GIKPTVEHCCSMIR 414 (525)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~ 414 (525)
.|...|++++|++.+++..+.....++ ..++..+...+...|+ +++|.+.+++..+.. +.+....++..++.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 788888888888887776552100111 3456667777777887 888888888776511 11223566777888
Q ss_pred HHhccCChHHHHHHHHHh----CC--CCc-hhHHHHHHHHHhcCCC---hHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 415 LMGQKGEVWRAQRMIREL----GF--GSY-GVVWRALLSASGACSD---LDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
.|.+.|++++|...+++. .. .+. ...+..+...+...++ +.+|+..+++. ...|+....+..++..|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888888875 11 122 3344555566667777 77777777662 2224455667788999999
Q ss_pred ccChhHHHHHHHHHHH
Q 048766 485 HGNWDVASVMRNFMRE 500 (525)
Q Consensus 485 ~g~~~~A~~~~~~~~~ 500 (525)
.|++++|..++++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-11 Score=100.72 Aligned_cols=168 Identities=11% Similarity=-0.007 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
...+..+...+...|++++|...++.+.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 45566778888999999999999998873 466788889999999999999999999998842 3357778888888
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDV 456 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 456 (525)
+...|+ +++|.+.++++.+. .+.+...+..++..+...|++++|...++++ ..+.+...+..++..+...|++++
T Consensus 86 ~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQK-YDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcC-HHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999 99999999998864 2446788889999999999999999999987 223456788889999999999999
Q ss_pred HHHHHHHHHhhcCCChhH
Q 048766 457 ARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 457 A~~~~~~~~~~~p~~~~~ 474 (525)
|...++++++..|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999999876644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-11 Score=108.88 Aligned_cols=184 Identities=10% Similarity=0.032 Sum_probs=120.3
Q ss_pred HHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-------HhHHHH
Q 048766 311 MYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-------SVTFLN 374 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~~~~~ 374 (525)
.|...|++++|...|++... .+ ..+|+.+...|...|++++|+..+++..+ +.|+ ..++..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ---IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 45556666666666655531 11 34667777777777788877777777665 2221 346677
Q ss_pred HHHHHcCC-CCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc---h-----hH
Q 048766 375 VLAACSHT-DIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY---G-----VV 440 (525)
Q Consensus 375 l~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~-----~~ 440 (525)
+...|... |+ +++|+..|++..+...-..+ ..++..++..|.+.|++++|+..+++. ...|+ . ..
T Consensus 123 lg~~~~~~lg~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 123 LGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHhhcC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 77778775 88 88888888887753211111 346778888899999999999999886 22222 1 14
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH-----HHHHHHHHh--hccChhHHHHHHHHH
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSDYV-----YVMLCNLYT--SHGNWDVASVMRNFM 498 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~ 498 (525)
+..++..+...|++++|+..++++++++|+.... +..++.++. ..+++++|+..|+++
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 6677778888999999999999999988865543 344566664 456788888887654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=108.99 Aligned_cols=232 Identities=11% Similarity=0.015 Sum_probs=150.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH----HHHHHHHHHhccccchHHHHHHHHHHHHh----CCC--c-hH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSKDV-PMDE----YTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD--A-SI 302 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 302 (525)
++.+...+...|++++|...+++...... .++. .++..+...+...|++++|...++...+. +.+ | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 44455566666777777776666544210 1111 22445556666777777777777766543 221 2 34
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccC--C------CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCR--K------NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL 373 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 373 (525)
..+..+...+...|++++|...+++... + ...++..+...+...|++++|...+++..... ..++ ...+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~-~~~~~~~~~~ 214 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL-GNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCCCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hccCcchhHH
Confidence 4566677788888888888888877641 1 12457777888889999999999998876532 1111 11111
Q ss_pred -----HHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-C--hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCch
Q 048766 374 -----NVLAACSHTDIPFDKVSEYFESMTKDYGIKP-T--VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSYG 438 (525)
Q Consensus 374 -----~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~ 438 (525)
..+..+...|+ +++|...++..... ...+ . ...+..+...+...|++++|...+++. +..++.
T Consensus 215 ~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 292 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGD-KAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292 (373)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence 22334667888 99999999888643 1111 1 224567788899999999999999876 111122
Q ss_pred -hHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 439 -VVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 439 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..+..+..++...|++++|...++++++..+
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 2556677788899999999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-10 Score=107.08 Aligned_cols=231 Identities=10% Similarity=0.046 Sum_probs=172.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHHHHHHHhccccchHHHHHHHHHHHHhCC-----C-chHHH
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDV-PMD----EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGL-----D-ASIVV 304 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~ 304 (525)
......+...|++++|+..|++...... .++ ..++..+..++...|+++.|...+....+... . ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566788888888888888776411 122 34566777788888899988888888765311 1 12456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCCCHhH
Q 048766 305 ASALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTV----RDLQPDSVT 371 (525)
Q Consensus 305 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~p~~~~ 371 (525)
+..+..+|...|++++|.+.+++..+ ++ ..++..+...|...|++++|++.+++..+. + .+....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhHHHH
Confidence 77888899999999999998887752 22 246788889999999999999999988761 1 1223677
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC---ChhHHHHHHHHHhccCC---hHHHHHHHHHhCCCCc-hhHHHHH
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP---TVEHCCSMIRLMGQKGE---VWRAQRMIRELGFGSY-GVVWRAL 444 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l 444 (525)
+..+...+...|+ +++|...+++..+...-.. ....+..+...|...|+ +.+|+..+++.+..|+ ...+..+
T Consensus 264 ~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQ-TQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8888889999999 9999999999876422211 23456667777888888 8899999998754444 3456778
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhc
Q 048766 445 LSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+..|...|++++|...++++++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-10 Score=99.44 Aligned_cols=244 Identities=9% Similarity=0.021 Sum_probs=130.7
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHH
Q 048766 209 NGIAQFGDIEDAIMILSSMPSPNSS-SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGM 287 (525)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 287 (525)
.-..-.|.+..++.-...+...+.. .-.-+.++|+..|+++.. ..-.|....+..+..-+. .+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----HH
Confidence 3344567777777755555432222 222334667777766531 112334334333333332 11 45
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCC-----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048766 288 LIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRK-----NLVTWNAMITGYARNGDLTKVIELFEQLKTV 362 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (525)
..++++.+.+ +++......+..++...|++++|.+++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 5555555444 333444446666677777777777777766422 334555666667777777777777777766
Q ss_pred CCCCC-----CHhHHHHHHHHH--cC--CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 363 RDLQP-----DSVTFLNVLAAC--SH--TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 363 ~~~~p-----~~~~~~~l~~~~--~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
..| +..+...++.++ .. .++ +.+|..+|+++... .|+......+..++.+.|++++|.+.++.+
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~-~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKET-ATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCST-TTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556 244555555442 11 224 67777777776542 343222223333666677777777776654
Q ss_pred CC-----------CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 433 GF-----------GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 433 ~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.. +.++.++..++......|+ +|.++++++.+..|++|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 11 2234445444444444555 666777777777776665544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=102.70 Aligned_cols=184 Identities=11% Similarity=0.024 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-C---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHH
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLCR--K-N---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFL 373 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 373 (525)
+...+..+...+.+.|++++|...|+.+.. | + ...+..+..+|...|++++|+..|++..+...-.|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444455555555666666666655541 1 2 334555555555566666666666655552100111 22333
Q ss_pred HHHHHHcC--------CCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHH
Q 048766 374 NVLAACSH--------TDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRAL 444 (525)
Q Consensus 374 ~l~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 444 (525)
.+..++.. .|+ +++|...|+++.+. .|+ ......+.......++ ....+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~---------------~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAK---------------LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchh-HHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44444444 455 55555555555543 222 1111111000000000 01113566
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHHHHhhc----------cChhHHHHHHHHHHHcCC
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDS---DYVYVMLCNLYTSH----------GNWDVASVMRNFMRERGL 503 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 503 (525)
+..+...|++++|+..|+++++..|++ +.++..++.+|... |++++|...++++.+..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 778888999999999999999988874 45788888888866 888999999998887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=108.83 Aligned_cols=200 Identities=13% Similarity=0.161 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC
Q 048766 301 SIVVASALLDMYSKCGQVEIADSMFRSLCR-------K----NLVTWNAMITGYARNGDLTKVIELFEQLKTV-----RD 364 (525)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 364 (525)
...++..+...|...|++++|...++++.. + ...++..+...|...|++++|+..++++.+. +.
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 344555566666666666666666655531 1 1235666667777777777777777766552 00
Q ss_pred CCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh-----CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-C---
Q 048766 365 LQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDY-----GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-G--- 433 (525)
Q Consensus 365 ~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--- 433 (525)
..| ...++..+...+...|+ +++|.++++++.+.. +-.| ....+..++..|.+.|++++|...++++ .
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 123 24566677777777777 888888777776431 0022 3456777788888888888888888765 1
Q ss_pred ------CCCc-hhHHHHHHHHHhcC------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 434 ------FGSY-GVVWRALLSASGAC------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 434 ------~~~~-~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
..+. ...+..+....... ..+..+...++......|..+.++..++.+|...|++++|..++++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 22333333333222 2233344444433333455667788999999999999999999988765
Q ss_pred c
Q 048766 501 R 501 (525)
Q Consensus 501 ~ 501 (525)
.
T Consensus 281 ~ 281 (283)
T 3edt_B 281 N 281 (283)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-09 Score=95.22 Aligned_cols=241 Identities=10% Similarity=-0.040 Sum_probs=165.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
++-..-.|++..++.-..++.. ........-+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 4455667888888874333221 22223334445677777766532 12234444444444433 322
Q ss_pred HHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHH
Q 048766 319 EIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFE 394 (525)
Q Consensus 319 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~ 394 (525)
|...|++.. .++..++..+..++...|++++|++++.+....+ ..+ +...+..++..+.+.|+ .+.|.+.++
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-~~~~~lea~~l~vqi~L~~~r-~d~A~k~l~ 160 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDND-EAEGTTELLLLAIEVALLNNN-VSTASTIFD 160 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-CSTTHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCcCcHHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 677777665 3455666678888999999999999999987754 212 46777788889999999 999999999
Q ss_pred HhhhhhCCCC-----ChhHHHHHHHH--HhccC--ChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048766 395 SMTKDYGIKP-----TVEHCCSMIRL--MGQKG--EVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEV 464 (525)
Q Consensus 395 ~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 464 (525)
+|.+. .| +..+...|+.+ ....| ++.+|..+|+++ ...|+......++.++.+.|++++|.+.++.+
T Consensus 161 ~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 161 NYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99743 66 34555566655 33334 899999999998 44454333333444788899999999999988
Q ss_pred Hhh----------cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 465 IKL----------EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 465 ~~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.+. +|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 776 58899999888888888887 88999999988764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-10 Score=98.44 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccC--CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh----HH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCR--KN----LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSV----TF 372 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~ 372 (525)
..+..+...+.+.|++++|...|+.+.. |+ ...+..++.+|.+.|++++|+..|+++.+ ..|+.. .+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~---~~P~~~~~~~a~ 81 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR---LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCCcHHHHH
Confidence 3444556667778888888888887752 32 23566677788888888888888888777 345422 33
Q ss_pred HHHHHHHcC------------------CCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCChHHHHHHHHHhC
Q 048766 373 LNVLAACSH------------------TDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEVWRAQRMIRELG 433 (525)
Q Consensus 373 ~~l~~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (525)
..+..++.. .|+ +++|...|+++.+. .|+ ...+....... .+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----------~~~~~-- 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQ-ARAAFSDFSKLVRG---YPNSQYTTDATKRLV----------FLKDR-- 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHH-HHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----------HHHHH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHH-HHHHHHHHHHHHHH---CcCChhHHHHHHHHH----------HHHHH--
Confidence 333333332 233 44555555544432 222 11111100000 00000
Q ss_pred CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh---hHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 434 FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD---YVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
.......++..+.+.|++++|+..|+++++..|+++ .++..++.++.+.|++++|...++++...++..
T Consensus 146 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 ---LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ---HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 001113456778899999999999999999999876 569999999999999999999999998876654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-10 Score=101.85 Aligned_cols=206 Identities=11% Similarity=0.016 Sum_probs=152.6
Q ss_pred CCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-C---Hh
Q 048766 264 PMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDAS---IVVASALLDMYSKCGQVEIADSMFRSLCR--K-N---LV 334 (525)
Q Consensus 264 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~ 334 (525)
+.+...+..+...+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+.+.. | + ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777788888999999999999999998875 333 67888899999999999999999999862 3 2 34
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh
Q 048766 335 TWNAMITGYAR--------NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV 406 (525)
Q Consensus 335 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 406 (525)
.+..+..++.. .|++++|+..|+++.+ ..|+.... ..+...+..+... -.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~--------------~~a~~~~~~~~~~-----~~ 148 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---RYPNHELV--------------DDATQKIRELRAK-----LA 148 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH---HCTTCTTH--------------HHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH---HCcCchhH--------------HHHHHHHHHHHHH-----HH
Confidence 67778888888 9999999999999998 55653211 1222222222111 11
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCCC----chhHHHHHHHHHhcC----------CChHHHHHHHHHHHhhcCCC
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFGS----YGVVWRALLSASGAC----------SDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~ 471 (525)
..+..++..|.+.|++++|+..|+++ ...| ....+..++.++... |++++|+..++++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 23567788899999999999999986 2223 245677777777755 89999999999999999988
Q ss_pred hh---HHHHHHHHHhhccChhHHH
Q 048766 472 DY---VYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 472 ~~---~~~~l~~~~~~~g~~~~A~ 492 (525)
+. +...+..++...|+++++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 64 4556666666666665543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-10 Score=103.94 Aligned_cols=200 Identities=9% Similarity=-0.033 Sum_probs=126.1
Q ss_pred hccccchHHHHHHHHHHHHh----CCCch-HHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHH
Q 048766 277 IAGLSALTWGMLIHSCVIKQ----GLDAS-IVVASALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITG 342 (525)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 342 (525)
+...|++++|...+.+..+. +.++. ..++..+..+|.+.|++++|...+++... .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555555444444332 21111 34566666667777777777666666541 11 2367777888
Q ss_pred HHhc-CChhHHHHHHHHHhhCCCCCCC-------HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCCh-----hHH
Q 048766 343 YARN-GDLTKVIELFEQLKTVRDLQPD-------SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTV-----EHC 409 (525)
Q Consensus 343 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~ 409 (525)
|... |++++|+..|++..+ +.|+ ..++..+...+...|+ +++|+..|+++.+...-.+.. ..+
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~---~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE---WYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH---HHHhCCChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 8885 888888888888776 3331 3457777888888888 999999998887541111111 146
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCchh------HHHHHHHHHh--cCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSYGV------VWRALLSASG--ACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~------~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
..++.++...|++++|+..+++. ...|+.. .+..++.++. ..+++++|+..|+++..++|.+...+..+-.
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 67788888899999999999886 4444421 2344555554 4577999999999888888855444444433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-11 Score=118.02 Aligned_cols=164 Identities=9% Similarity=0.119 Sum_probs=140.2
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLN 374 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 374 (525)
|.+..+++.+..+|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|++.|++..+ +.|+ ...+..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 4456788888999999999999999998876 34577899999999999999999999999998 6675 678888
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcC
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGAC 451 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~ 451 (525)
+..++...|+ +++|++.|++..+. .| +...|..++.+|.+.|++++|++.|++. ...|+ ...+..++..+...
T Consensus 83 Lg~~l~~~g~-~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQD-VQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 9999999999 99999999998854 55 4778999999999999999999999986 44454 67888899999999
Q ss_pred CChHHHHHHHHHHHhhcC
Q 048766 452 SDLDVARISAAEVIKLEG 469 (525)
Q Consensus 452 ~~~~~A~~~~~~~~~~~p 469 (525)
|++++|.+.+++++++.|
T Consensus 159 g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp TCCTTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCh
Confidence 999999999999998765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=102.56 Aligned_cols=174 Identities=5% Similarity=-0.072 Sum_probs=134.2
Q ss_pred HHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhh
Q 048766 320 IADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTK 398 (525)
Q Consensus 320 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 398 (525)
.....+....+.+...+..+...+...|++++|+..|+++.+ ..| +...+..+...+...|+ +++|.+.++++..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~-~~~A~~~l~~~~~ 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNR-SEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTC-HHHHHHHHTTSCG
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCC-HHHHHHHHHhCch
Confidence 334444444445555666777788888888888888888888 556 45677778888888888 8999998888874
Q ss_pred hhCCCCChhHHHH-HHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC--hh
Q 048766 399 DYGIKPTVEHCCS-MIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS--DY 473 (525)
Q Consensus 399 ~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~ 473 (525)
. .|+...... ....+.+.++.++|+..+++. . .+.+...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 455433322 233356777788888888876 2 23457788899999999999999999999999999988 88
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
++..++.++...|+.++|...+++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=98.40 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=90.9
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhc
Q 048766 341 TGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQ 418 (525)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 418 (525)
..+...|++++|+..+++... ..|+ ...+..+...|...|+ +++|++.|++..+. .| ++..|..++.+|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~-~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKE-YDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 344455666777777766655 3443 3444556666667776 77777777776643 34 46667777777777
Q ss_pred cCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHH-HHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 419 KGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARIS-AAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 419 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
.|++++|+..|++. ...| ++..+..++..+.+.|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777777765 3333 355677777777777777665544 577888888888777777777777664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=92.56 Aligned_cols=103 Identities=12% Similarity=-0.089 Sum_probs=91.2
Q ss_pred CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHH
Q 048766 401 GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 401 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 477 (525)
.+.| +...+..++..+.+.|++++|+..|+++ ...| ++..|..++.++...|++++|+..|+++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 3567888899999999999999999987 3334 57788999999999999999999999999999999999999
Q ss_pred HHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 478 LCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++.+|...|++++|+..|++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-10 Score=87.86 Aligned_cols=129 Identities=18% Similarity=0.119 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHh
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASG 449 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 449 (525)
+..+...+...|+ +++|..+++.+.+. .+.+...+..++..+...|++++|...++++ ..+.+...+..++..+.
T Consensus 4 ~~~l~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGD-YDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-HHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3344445555555 66666666655542 1223455556666666666666666666665 11234556667777888
Q ss_pred cCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 450 ACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 450 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|+..++++++..|.++.++..++.++...|++++|...++++.+..+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 888888888888888888888888888888888888888888888888876543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-09 Score=90.83 Aligned_cols=173 Identities=10% Similarity=-0.005 Sum_probs=134.5
Q ss_pred HHHHHHhcc-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCC----CCcchHHHHHHH
Q 048766 321 ADSMFRSLC-RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTD----IPFDKVSEYFES 395 (525)
Q Consensus 321 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~~a~~~~~~ 395 (525)
|.+.|++.. ..++..+..+...|...+++++|+++|++..+.| +...+..+...|.. + + +++|.++|++
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~-~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQAD-YPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCC-HHHHHHHHHH
Confidence 344444443 4566777778888888889999999999888754 45566666666766 5 5 8899999988
Q ss_pred hhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHh-CCCCc---hhHHHHHHHHHhc----CCChHHHHHHHHH
Q 048766 396 MTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIREL-GFGSY---GVVWRALLSASGA----CSDLDVARISAAE 463 (525)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~ 463 (525)
..+. -++..+..|...|.. .+++++|++.|++. ...+. +..+..|...|.. .+++++|+..|++
T Consensus 79 A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 8653 366777888888877 88999999999987 43342 6778888888877 7899999999999
Q ss_pred HHhhcCCChhHHHHHHHHHhhc-c-----ChhHHHHHHHHHHHcCCc
Q 048766 464 VIKLEGDSDYVYVMLCNLYTSH-G-----NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 464 ~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 504 (525)
+.+. |.++.++..|+.+|... | ++++|..++++..+.|..
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9988 55788999999998764 3 899999999999888753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=93.95 Aligned_cols=155 Identities=8% Similarity=0.024 Sum_probs=96.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH-H
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL-M 416 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 416 (525)
+...+...|++++|+..|++..+ ..| +...+..+...+...|+ +++|...++.+.+. .|++..+..+... +
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~-~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQ-FELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTC-HHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 34445555555555555555554 333 24445555555555555 55666555555432 2222222211111 1
Q ss_pred hccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC--hhHHHHHHHHHhhccChhHHH
Q 048766 417 GQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDS--DYVYVMLCNLYTSHGNWDVAS 492 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 492 (525)
...++..+|+..+++. ...| +...+..++..+...|++++|+..++++++.+|+. +.++..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1112223455566654 2234 46778888888999999999999999999999864 568999999999999999999
Q ss_pred HHHHHHHH
Q 048766 493 VMRNFMRE 500 (525)
Q Consensus 493 ~~~~~~~~ 500 (525)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=117.48 Aligned_cols=166 Identities=12% Similarity=-0.020 Sum_probs=89.0
Q ss_pred HcCCCHHHHHHHHHhcc-----------CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHc
Q 048766 313 SKCGQVEIADSMFRSLC-----------RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACS 380 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 380 (525)
...|++++|.+.+++.. +.+...+..+...+...|++++|++.|+++.+ ..| +...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHHHH
Confidence 44555555555555544 22334555555555556666666666665555 333 3445555555555
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 457 (525)
..|+ +++|.+.|+++.+. .| +...+..++.+|.+.|++++ ++.|+++ ...| +...|..++.++...|++++|
T Consensus 479 ~~g~-~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 479 LTGD-YDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHTC-HHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCC-HHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 5555 66666666555532 33 34455555555666666655 5555554 2222 244555555566666666666
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
++.|+++++++|++..++..++.++...|
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 66666666666655566666666654433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.2e-10 Score=95.13 Aligned_cols=135 Identities=10% Similarity=-0.010 Sum_probs=101.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHH
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRL 415 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 415 (525)
.+...|...|++++|+..|++..+ ..| +...+..+...+...|+ +++|.+.|+++.+. .| ++..+..++..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~---~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ---KAPNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQL---EADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc---CCCCHHHHHHHHHH
Confidence 378889999999999999999998 566 56788888888999999 99999999999854 55 57788888888
Q ss_pred HhccCC--hHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 416 MGQKGE--VWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 416 ~~~~g~--~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
|...|+ .+.+...++.. ...|....+.....++...|++++|+..|++++++.|+ ......+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 876654 34556666655 32333345556677777889999999999999999994 444444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-10 Score=99.11 Aligned_cols=200 Identities=9% Similarity=0.017 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHh------CC-CchHHHHHHHHHHHHcCCCHHHHHHHHHhccC-------C-
Q 048766 267 EYTFSTMLSGIAGLSALTWGMLIHSCVIKQ------GL-DASIVVASALLDMYSKCGQVEIADSMFRSLCR-------K- 331 (525)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~- 331 (525)
..++..+...+...|++++|...+..+.+. +. +....++..+..+|...|++++|.+.+++... +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555666666666666666666666543 21 22345666677777777777777777766541 1
Q ss_pred ---CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh--
Q 048766 332 ---NLVTWNAMITGYARNGDLTKVIELFEQLKTV-----RDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY-- 400 (525)
Q Consensus 332 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-- 400 (525)
...++..+...|...|++++|+..++++.+. +...|+ ..++..+...+...|+ +++|.++++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 1345666777777778888888777777663 101332 4566677777777777 888888877776431
Q ss_pred ----CCCC-ChhHHHHHHHHHhcc------CChHHHHHHHHHhC-CCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 401 ----GIKP-TVEHCCSMIRLMGQK------GEVWRAQRMIRELG-FGSY-GVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 401 ----~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
...+ ....+..+...+... ..+.++...++... ..|+ ...+..++..+...|++++|...++++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 222333333333332 23444444444442 2233 456778889999999999999999998875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=93.33 Aligned_cols=123 Identities=10% Similarity=-0.073 Sum_probs=102.9
Q ss_pred HHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCC
Q 048766 377 AACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSD 453 (525)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 453 (525)
..+...|+ +++|++.++.... ..| ++..+..++..|.+.|++++|++.|++. ...| +..+|..++..+...|+
T Consensus 5 ~~~~~~~~-~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKAD-VERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHH-HHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCh-HHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 34555666 8999999988763 344 3556778999999999999999999987 3344 57789999999999999
Q ss_pred hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH-HHHHHHcCC
Q 048766 454 LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM-RNFMRERGL 503 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 503 (525)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887765 588877654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-10 Score=109.80 Aligned_cols=159 Identities=10% Similarity=0.024 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHH
Q 048766 315 CGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 315 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
.|++++|.+.+++.. +.+...|..+...+...|++++|++.+++..+ ..| +...+..+...+...|+ +++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~-~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQR-HAEAA 77 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTC-HHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC-HHHHH
Confidence 478899999999886 34567889999999999999999999999998 556 46788888889999999 99999
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcC---CChHHHHHHHHHHH
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGAC---SDLDVARISAAEVI 465 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~ 465 (525)
+.+++..+. .+.+...+..++..|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.+++++
T Consensus 78 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999864 1335778899999999999999999999987 3333 467788888889888 99999999999999
Q ss_pred hhcCCChhHHHHHH
Q 048766 466 KLEGDSDYVYVMLC 479 (525)
Q Consensus 466 ~~~p~~~~~~~~l~ 479 (525)
+.+|++...+..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99998888887776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-10 Score=85.16 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
..+...+..|.+.|++++|++.|++. ... .+...|..++.++.+.|++++|+..++++++++|+++.+|..++.++..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44556666677777777777777665 222 3355666666777777777777777777777777777777777777777
Q ss_pred ccChhHHHHHHHHHHHcCC
Q 048766 485 HGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~ 503 (525)
.|++++|++.|++..+..+
T Consensus 94 ~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHCc
Confidence 7777777777777666543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-09 Score=83.56 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.|..++..+...|++++|+.+++++.+.. +.+...+..+...+...|+ +++|..+++++.+. .+.+...+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALEL--DPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 45667777888888888888888887743 2356667777777778887 88888888888754 2335667778888
Q ss_pred HHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 415 LMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++.+|+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888889999998888876 2 2334667788888899999999999999999998885
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-09 Score=96.94 Aligned_cols=219 Identities=9% Similarity=-0.026 Sum_probs=150.7
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 048766 245 RNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG-LSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323 (525)
Q Consensus 245 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 323 (525)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777777777665431 110 112 46666666666543 446777888888888
Q ss_pred HHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCC--HhHHHHHHHHHcCCCCCcchHH
Q 048766 324 MFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTVRD--LQPD--SVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 324 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+... -.|. ..++..+...|.. |+ +++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~-~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD-LSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC-HHHHH
Confidence 8777641 12 34778888999999999999999998765210 0222 3567778888888 88 99999
Q ss_pred HHHHHhhhhhCCCC----ChhHHHHHHHHHhccCChHHHHHHHHHh-C---CCCc----hhHHHHHHHHHhcCCChHHHH
Q 048766 391 EYFESMTKDYGIKP----TVEHCCSMIRLMGQKGEVWRAQRMIREL-G---FGSY----GVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 391 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~~~l~~~~~~~~~~~~A~ 458 (525)
+.|++..+...-.. ...++..++..|.+.|++++|+..+++. . ..++ ...+..++..+...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998875421111 1467888999999999999999999986 1 1111 235566677778889999999
Q ss_pred HHHHHHHhhcCCChhH-----HHHHHHHHhhccChhHHHH
Q 048766 459 ISAAEVIKLEGDSDYV-----YVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 493 (525)
..+++++ ..|..... ...++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 88865432 34455555 5677666655
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-08 Score=89.20 Aligned_cols=162 Identities=6% Similarity=-0.068 Sum_probs=123.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHh----HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHH
Q 048766 338 AMITGYARNGDLTKVIELFEQLKTVRDLQPDSV----TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHC 409 (525)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 409 (525)
..+..+...|++++|..++++..+.....|+.. .+..+...+...++ +++|+..++++.+...-.++ ...+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD-YEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC-HHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 346678889999999999999887432233321 23345566677777 99999999998863111222 2368
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-----C--CC-Cc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC------hhH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-----G--FG-SY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDS------DYV 474 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-----~--~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~ 474 (525)
+.++..|...|++++|+..++++ . .. +. ..++..++..|.+.|++++|+..+++++++.+.. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999999999886 1 11 11 3467889999999999999999999999876432 678
Q ss_pred HHHHHHHHhhccC-hhHHHHHHHHHHH
Q 048766 475 YVMLCNLYTSHGN-WDVASVMRNFMRE 500 (525)
Q Consensus 475 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 500 (525)
+..++.+|.+.|+ +++|...+++..+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999995 6999999998865
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=97.80 Aligned_cols=198 Identities=9% Similarity=-0.031 Sum_probs=150.3
Q ss_pred cccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 048766 279 GLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQ 358 (525)
Q Consensus 279 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (525)
..|++++|..++++..+.... . .+...++++.|...|... +..|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 467888999999888765321 1 011157888888877654 5678889999999999998
Q ss_pred HhhCCC-C-CC--CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCC--C--ChhHHHHHHHHHhccCChHHHHHHHH
Q 048766 359 LKTVRD-L-QP--DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIK--P--TVEHCCSMIRLMGQKGEVWRAQRMIR 430 (525)
Q Consensus 359 ~~~~~~-~-~p--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (525)
..+... . .+ -..+|..+...|...|+ +++|+..+++..+.+.-. + ...++..+...|.. |++++|+..++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 766210 0 11 13577888888999999 999999999876542111 1 14577888999988 99999999999
Q ss_pred Hh----C-C-CCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh------hHHHHHHHHHhhccChhHHHHHHH
Q 048766 431 EL----G-F-GSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDSD------YVYVMLCNLYTSHGNWDVASVMRN 496 (525)
Q Consensus 431 ~~----~-~-~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 496 (525)
+. + . .+. ..++..++..+...|++++|+..+++++++.|++. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86 1 1 111 45678889999999999999999999999876442 367788889999999999999999
Q ss_pred HHH
Q 048766 497 FMR 499 (525)
Q Consensus 497 ~~~ 499 (525)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.4e-10 Score=87.89 Aligned_cols=102 Identities=16% Similarity=0.004 Sum_probs=80.7
Q ss_pred CCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 402 IKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 402 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
+.| +...+..++..+.+.|++++|+..|+++ .. +.+...|..++.++...|++++|+..|+++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344 4556677788888888888888888876 22 33567777888888888888888888888888888888888888
Q ss_pred HHHHhhccChhHHHHHHHHHHHcCC
Q 048766 479 CNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.+|...|++++|+..|++..+..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 8888888888888888888877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-09 Score=105.05 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=120.2
Q ss_pred ccccchHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhc
Q 048766 278 AGLSALTWGMLIHSCVI--------KQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARN 346 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 346 (525)
...|++++|...++... +.. +.+...+..+..++...|++++|.+.|+++. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56777777777777776 322 4456677777778888888888888888776 34666778888888888
Q ss_pred CChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 424 (525)
|++++|++.|++..+ ..| +...+..+..++...|+ +++ ++.|+++.+. .| +...|..++.+|.+.|++++
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGN-TDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHH
Confidence 888888888888887 556 35667777777888887 888 8888887753 44 46677888888888888888
Q ss_pred HHHHHHHh-CCCCc-hhHHHHHHHHHhcCCC
Q 048766 425 AQRMIREL-GFGSY-GVVWRALLSASGACSD 453 (525)
Q Consensus 425 A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~ 453 (525)
|++.|+++ ...|+ ...+..+..++...++
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888886 45555 4566667777666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.4e-08 Score=85.90 Aligned_cols=209 Identities=11% Similarity=0.128 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC--CHHHHHHHHHhcc---CCCHhHHHHHHHHH----Hhc---CChhHH
Q 048766 285 WGMLIHSCVIKQGLDASIVVASALLDMYSKCG--QVEIADSMFRSLC---RKNLVTWNAMITGY----ARN---GDLTKV 352 (525)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~a 352 (525)
+|+.....++..+ +.+..+++.-..++...| +++++.+.++.+. +.+..+|+.-...+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 3444444444433 333334444444444555 5666666666554 23344454443333 333 566777
Q ss_pred HHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcc--hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCC------hH
Q 048766 353 IELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFD--KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGE------VW 423 (525)
Q Consensus 353 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 423 (525)
+++++++.+ ..| +...+..-...+...+. ++ +++++++++.+. -.-+...|+.-..++.+.|+ ++
T Consensus 130 L~~~~~~l~---~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 130 FDILEAMLS---SDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 777777776 344 45556555555555555 66 777777777653 12244555555555555555 66
Q ss_pred HHHHHHHHh--CCCCchhHHHHHHHHHhcCCC-hHHHHHHHHHHHhhc---CCChhHHHHHHHHHhhccChhHHHHHHHH
Q 048766 424 RAQRMIREL--GFGSYGVVWRALLSASGACSD-LDVARISAAEVIKLE---GDSDYVYVMLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 424 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (525)
++++.++++ ..+.+...|..+...+.+.|+ .+.+..+..++++++ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 777777665 223345666666666666665 344555666666655 66777777777777777777778877777
Q ss_pred HHH
Q 048766 498 MRE 500 (525)
Q Consensus 498 ~~~ 500 (525)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-08 Score=91.16 Aligned_cols=165 Identities=6% Similarity=-0.055 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH----hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhC--CCCC--h
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS----VTFLNVLAACSHTDIPFDKVSEYFESMTKDYG--IKPT--V 406 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 406 (525)
.+...+..+...|++++|++.+++..+.....++. ..+..+...+...|+ +++|...+++..+... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD-YEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44456677888899999999998887743111111 223344555677778 9999999988764311 1111 4
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC------C
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGD------S 471 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~ 471 (525)
..++.++..|...|++++|+..++++ +..+. ..++..++..|...|++++|+..++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999999875 21221 257888999999999999999999999987632 1
Q ss_pred hhHHHHHHHHHhhccChhHH-HHHHHHHHH
Q 048766 472 DYVYVMLCNLYTSHGNWDVA-SVMRNFMRE 500 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 500 (525)
..++..++.+|...|++++| ..++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67789999999999999999 777887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=82.34 Aligned_cols=115 Identities=8% Similarity=-0.019 Sum_probs=92.7
Q ss_pred CCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHH
Q 048766 365 LQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVW 441 (525)
Q Consensus 365 ~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~ 441 (525)
+.|+ ...+......+.+.|+ +++|++.|++..+. -+.++..|..++.+|.+.|++++|+..+++. ... .+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 5564 3556677777888888 88888888888753 1335777888888888889999998888876 333 346788
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
..++.++...|++++|++.|+++++++|+++.++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 89999999999999999999999999999999998887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-09 Score=91.45 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=116.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHH----------------HHHHHcCCCCCcchHHHHHHHhhhhhC
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLN----------------VLAACSHTDIPFDKVSEYFESMTKDYG 401 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~~a~~~~~~~~~~~~ 401 (525)
....+...|++++|+..|++..+ ..|+ ...+.. +...+...|+ +++|+..|++..+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN-YDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH--
Confidence 34455666777777777777766 4554 334444 7888889999 99999999999864
Q ss_pred CCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCC--ChHHHHHHHHHHHhhcCCChhHHH
Q 048766 402 IKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACS--DLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 402 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.| ++..+..++.+|...|++++|+..|+++ ...| +...+..++..+...| +...+...++++....| ....+.
T Consensus 84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ 161 (208)
T 3urz_A 84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARY 161 (208)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHH
Confidence 45 5788999999999999999999999987 3344 4677888888776554 45566777777654333 234566
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.++.++...|++++|+..|++..+..+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7888899999999999999999877654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-09 Score=104.03 Aligned_cols=150 Identities=14% Similarity=0.045 Sum_probs=75.5
Q ss_pred CChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 424 (525)
|++++|++.+++..+ ..| +...+..+...+...|+ +++|.+.+++..+ ..| +...+..++..|...|++++
T Consensus 3 g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR---HRPQDFVAWLMLADAELGMGD-TTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 455566666666555 334 24555555555555565 6666666666553 233 34555556666666666666
Q ss_pred HHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc---cChhHHHHHHHHHH
Q 048766 425 AQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH---GNWDVASVMRNFMR 499 (525)
Q Consensus 425 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 499 (525)
|.+.+++. ...| +...+..++..+...|++++|++.++++++.+|+++.++..++.++... |++++|.+.+++..
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 66666654 2122 3445555566666666666666666666666666666666666666666 66666666666555
Q ss_pred HcCC
Q 048766 500 ERGL 503 (525)
Q Consensus 500 ~~~~ 503 (525)
+.+.
T Consensus 156 ~~~p 159 (568)
T 2vsy_A 156 AQGV 159 (568)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 5443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=91.76 Aligned_cols=162 Identities=6% Similarity=-0.109 Sum_probs=119.3
Q ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHH
Q 048766 299 DASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNV 375 (525)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (525)
+.+...+..+...+.+.|++++|...|+++. +.+...+..+...+...|++++|+..++++.. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHH
Confidence 5556666677777888888888888888775 34566788888888888888888888888877 45654433322
Q ss_pred HH-HHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC---chhHHHHHHHHHhc
Q 048766 376 LA-ACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS---YGVVWRALLSASGA 450 (525)
Q Consensus 376 ~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~ 450 (525)
.. .+...+. .+.|.+.+++.... -+.+...+..++..|...|++++|+..++++ ...| +...+..++..+..
T Consensus 191 ~~~~l~~~~~-~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAA-DTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHT-SCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcc-cCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 22 3455566 77788888887753 2335777888888888899999998888886 2223 35678888888888
Q ss_pred CCChHHHHHHHHHHHh
Q 048766 451 CSDLDVARISAAEVIK 466 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~ 466 (525)
.|+.++|...+++.+.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 8988889888888765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-09 Score=86.40 Aligned_cols=155 Identities=11% Similarity=0.025 Sum_probs=120.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH-Hc
Q 048766 305 ASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA-CS 380 (525)
Q Consensus 305 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 380 (525)
.......+.+.|++++|...|+... +.+...+..+...+...|++++|+..++++.+ ..|+.......... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence 3456677888999999999999987 44677889999999999999999999999887 44544333222211 12
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc---hhHHHHHHHHHhcCCChH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY---GVVWRALLSASGACSDLD 455 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~ 455 (525)
..+. ...|.+.+++..+. .| ++..+..++..+...|++++|+..++++ ...|+ ...+..++..+...|+.+
T Consensus 86 ~~~~-~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 86 QQAA-ESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHT-SCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hhcc-cchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2233 45678888888753 55 5788899999999999999999999987 55554 457888999999999999
Q ss_pred HHHHHHHHHHh
Q 048766 456 VARISAAEVIK 466 (525)
Q Consensus 456 ~A~~~~~~~~~ 466 (525)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-09 Score=88.18 Aligned_cols=127 Identities=12% Similarity=-0.043 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.+..+...+...|++++|+..|++. +.|+...+..+...+...|+ +++|.+.+++..+. .+.+...+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKN-MTEAEKAFTRSINR--DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 3445556666677777777777654 35566666666666777776 77777777766643 1234556666666
Q ss_pred HHhccCChHHHHHHHHHh-CCCC-----------------chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 415 LMGQKGEVWRAQRMIREL-GFGS-----------------YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~-~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
+|...|++++|++.+++. ...| ....+..++..+...|++++|.+.++++++..|
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 777777777777776665 1111 124556666666667777777777777776666
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-07 Score=89.14 Aligned_cols=371 Identities=8% Similarity=0.001 Sum_probs=195.7
Q ss_pred chhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCC-hHHHHHHHHH
Q 048766 18 WDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ--PSVVSWNSLISGYVQSGK-YRKALNLFVE 94 (525)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~A~~~~~~ 94 (525)
++..|..+|+..+.. -|. |+++.+..+|++... |++..|...+....+.++ .+....+|+.
T Consensus 10 ~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 366677777766544 222 788889999988766 888888888877766653 3556677777
Q ss_pred HHhc-CCC-CCHhhHHHHHHHHc----ccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHh---cCCHHHHHHHHhhc
Q 048766 95 LERS-EIY-ADAYSFTSALAACG----QLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGK---CGSVEDAIGVFGEM 165 (525)
Q Consensus 95 m~~~-~~~-p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~ 165 (525)
.... |.. ++...|...+..+. ..++.+.+..+|+.++.. ++.. +..+-..|.. ......+.+++.+.
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 6653 322 35566766666544 245677788888888763 2211 1222222211 11122222222211
Q ss_pred cCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 048766 166 IDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNR 245 (525)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (525)
. +.+..|...++.+ ...+.. .+...|...+..-...
T Consensus 150 ~-----------------~~y~~ar~~y~~~------------------------~~~~~~---~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 150 L-----------------PIFQSSFQRYQQI------------------------QPLIRG---WSVKNAARLIDLEMEN 185 (493)
T ss_dssp H-----------------HHHHHHHHHHHHH------------------------HHHHHT---CSHHHHHHHHHHHHTC
T ss_pred h-----------------HHHHHHHHHHHHH------------------------HHHHhh---ccHHHHHHHHHHHhcC
Confidence 0 1112222222211 011100 0111222222221111
Q ss_pred C-------ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCH
Q 048766 246 N-------RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQV 318 (525)
Q Consensus 246 ~-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (525)
+ ..+.+..+|++++.. .+.+...|...+.-+...|+.+.|..++++.... |.+...+...... .+.++
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~- 260 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEA- 260 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTH-
T ss_pred CccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhH-
Confidence 0 012344455555443 2334444554555555555555555555555555 3232222211111 00010
Q ss_pred HHHHHHHHhc------------cCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcC-CCCC
Q 048766 319 EIADSMFRSL------------CRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSH-TDIP 385 (525)
Q Consensus 319 ~~A~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~ 385 (525)
....+.+.. .......|...+..+.+.++.+.|..+|+++ ... .++...|......-.. .++
T Consensus 261 -~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d- 335 (493)
T 2uy1_A 261 -VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGS- 335 (493)
T ss_dssp -HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCC-
T ss_pred -HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCC-
Confidence 011111111 0111245777777777788899999999998 422 2344444432222111 234
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
.+.|..+|+...+.+ +.++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 336 ~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 336 RATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 899999999998753 2345566777888888999999999999973 356677777777777899999999998887
Q ss_pred h
Q 048766 466 K 466 (525)
Q Consensus 466 ~ 466 (525)
+
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=83.23 Aligned_cols=98 Identities=13% Similarity=-0.057 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+.+.|++++|+..|+++ .. +.+...|..++.++...|++++|+..|+++++.+|+++.++..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666777788888888888888876 22 3356677778888888888888888888888888888888888888888
Q ss_pred hccChhHHHHHHHHHHHcCC
Q 048766 484 SHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|...+++..+..+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888776543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.5e-08 Score=81.56 Aligned_cols=172 Identities=8% Similarity=-0.062 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc-CCCHhHHHHHHHHHHhcC----ChhHHHHHHHHHh
Q 048766 286 GMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC-RKNLVTWNAMITGYARNG----DLTKVIELFEQLK 360 (525)
Q Consensus 286 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 360 (525)
|...|....+.| ++..+..+...|...+++++|...|++.. ..++..+..+...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555443 44555566666767777777777777765 3455667777777776 5 7888888888887
Q ss_pred hCCCCCCCHhHHHHHHHHHcC----CCCCcchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhc----cCChHHHHHHH
Q 048766 361 TVRDLQPDSVTFLNVLAACSH----TDIPFDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQ----KGEVWRAQRMI 429 (525)
Q Consensus 361 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~ 429 (525)
+.| +...+..+...|.. .++ +++|.++|++..+. .|+ +..+..|...|.. .+++++|+..|
T Consensus 81 ~~g----~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 81 EAG----SKSGEIVLARVLVNRQAGATD-VAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HTT----CHHHHHHHHHHHTCGGGSSCC-HHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HCC----CHHHHHHHHHHHHcCCCCccC-HHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 744 45566667777766 666 89999999888743 442 6778888888887 78899999999
Q ss_pred HHh-CCCCchhHHHHHHHHHhcC-C-----ChHHHHHHHHHHHhhcC
Q 048766 430 REL-GFGSYGVVWRALLSASGAC-S-----DLDVARISAAEVIKLEG 469 (525)
Q Consensus 430 ~~~-~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 469 (525)
++. ...+++..+..+...|..- | ++++|+..|+++.+.++
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 987 3334566777777777542 3 89999999999999874
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=87.15 Aligned_cols=186 Identities=8% Similarity=-0.082 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHhccccchHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCCHHHHHHHHHhcc--CCC-H---hHHH
Q 048766 266 DEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLD--ASIVVASALLDMYSKCGQVEIADSMFRSLC--RKN-L---VTWN 337 (525)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~---~~~~ 337 (525)
+...+..+...+...|++++|...|+.+.+.... .....+..+..+|.+.|++++|...|+.+. .|+ . ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777889999999999999999987532 234677888999999999999999999986 232 2 2455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhh
Q 048766 338 AMITGYAR------------------NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKD 399 (525)
Q Consensus 338 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 399 (525)
.+..++.. .|++++|+..|+++.+ ..|+...... +......+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~--------------a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTD--------------ATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHH--------------HHHHHHHHHHH
Confidence 55666654 5789999999999998 5676432111 11111111110
Q ss_pred hCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 400 YGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
.......++..|.+.|++++|+..|+++ ...|+ ...+..++.++.+.|++++|++.++++....|++..
T Consensus 146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0112245678899999999999999987 22233 356888899999999999999999999998886543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-08 Score=87.12 Aligned_cols=184 Identities=10% Similarity=-0.016 Sum_probs=124.5
Q ss_pred cCCCHHHHHHHHHhcc---CCCHhHHHHH-------HHHHHhcCChhHHHHHHHHHhhCCCCCCCH--------------
Q 048766 314 KCGQVEIADSMFRSLC---RKNLVTWNAM-------ITGYARNGDLTKVIELFEQLKTVRDLQPDS-------------- 369 (525)
Q Consensus 314 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------------- 369 (525)
..++...|.+.|.++. +.....|..+ ..++...++..+++..+++..+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---CChhhhhhhhccCCccccc
Confidence 4677777888887776 2344567666 4556666666666666666555 33321
Q ss_pred --------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCc----
Q 048766 370 --------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSY---- 437 (525)
Q Consensus 370 --------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 437 (525)
.....+...+...|+ +++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~-y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGN-YADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTC-HHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 112234556667777 88888888777642 45433666666777888888888888877633332
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CC-ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLE--GD-SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
...+..+..++...|++++|+..|+++.... |. .+.+...++.++.+.|+.++|..+|+++....+.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 2356677778888888888888888887533 43 4457778888888888888888888888877654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.6e-09 Score=85.75 Aligned_cols=122 Identities=9% Similarity=0.037 Sum_probs=86.3
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHH-HhcCCCh--
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSA-SGACSDL-- 454 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~-~~~~~~~-- 454 (525)
...|+ +++|...++...+. .+.+...+..++..|...|++++|...++++ .. +.+...+..++.. +...|++
T Consensus 21 ~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQN-PEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C------CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 44566 77787777777653 1335667777788888888888888888775 22 2345566667777 6677887
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 455 DVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 455 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
++|+..++++++.+|+++.++..++.++...|++++|...++++.+..+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888888776554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.7e-09 Score=79.36 Aligned_cols=96 Identities=14% Similarity=-0.053 Sum_probs=84.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
.+..++..+.+.|++++|+..+++. ...| +...|..++.++...|++++|+..++++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4566788899999999999999987 3334 5778889999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHcCC
Q 048766 486 GNWDVASVMRNFMRERGL 503 (525)
Q Consensus 486 g~~~~A~~~~~~~~~~~~ 503 (525)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887644
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-08 Score=81.58 Aligned_cols=127 Identities=6% Similarity=-0.057 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSAS 448 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 448 (525)
.+..+...+...|+ +++|...+++..+. .+.+...+..++..+...|++++|+..+++. .. +.+...+..++..+
T Consensus 15 ~~~~~a~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKD-YENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666777 77777777777653 1235667777778888888888888888775 22 33466788888999
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH--HhhccChhHHHHHHHHHHH
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNL--YTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 500 (525)
...|++++|+..++++++..|+++..+..+..+ +...|++++|+..+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888554444 8889999999999987755
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=78.62 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+.+.|++++|+..|++. .. +.+...|..++.++...|++++|+..++++++.+|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777888888888888888876 22 3346777888888888888888888888888888888888888888888
Q ss_pred hccChhHHHHHHHHHHHcC
Q 048766 484 SHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~ 502 (525)
..|++++|...+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888887755
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=75.86 Aligned_cols=101 Identities=12% Similarity=-0.043 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC--ChhHHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGD--SDYVYVMLCN 480 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 480 (525)
+...+..++..+.+.|++++|...+++. . .+.+...+..++..+...|++++|+..++++++..|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4567788889999999999999999986 2 2345677888999999999999999999999999999 9999999999
Q ss_pred HHhhc-cChhHHHHHHHHHHHcCCcc
Q 048766 481 LYTSH-GNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 481 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 505 (525)
++... |++++|.+.+++..+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999998876643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.4e-09 Score=93.96 Aligned_cols=190 Identities=7% Similarity=-0.075 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHH
Q 048766 302 IVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLA 377 (525)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 377 (525)
...+..+...+.+.|++++|...|+... +.+...|..+...|.+.|++++|+..+++..+ ..| +...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 4455566677777778888877777765 33566777788888888888888888888877 455 4566777777
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhCCCCCh-hHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYGIKPTV-EHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDV 456 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 456 (525)
++...|+ +++|...|++..+. .|+. ..+...+....+..+...... .......++......+.. + ..|++++
T Consensus 81 ~~~~~g~-~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMES-YDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCC-HHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 7888887 88888888877653 2211 111112222211111111111 122222333333333322 2 2689999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhhc-cChhHHHHHHHHHHHc
Q 048766 457 ARISAAEVIKLEGDSDYVYVMLCNLYTSH-GNWDVASVMRNFMRER 501 (525)
Q Consensus 457 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 501 (525)
|++.++++++.+|++......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998888888888777776 7899999999988664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-08 Score=93.51 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=109.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHH
Q 048766 332 NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCS 411 (525)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 411 (525)
+...+..+...+.+.|++++|+..|++..+ ..|+...+ . .+.+.+.- +.....|..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~-----------~-~~~~~~~~---------~~~~~~~~n 201 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSF-----------S-NEEAQKAQ---------ALRLASHLN 201 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCC-----------C-SHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccC-----------C-hHHHHHHH---------HHHHHHHHH
Confidence 345677777777778888888888888777 44443110 1 11111111 012467888
Q ss_pred HHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChh
Q 048766 412 MIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 489 (525)
++.+|.+.|++++|+..++++ ... .+...+..++.++...|++++|+..|+++++++|+++.++..++.++...|+++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987 333 357788899999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHH
Q 048766 490 VA-SVMRNFMRE 500 (525)
Q Consensus 490 ~A-~~~~~~~~~ 500 (525)
+| ...+++|.+
T Consensus 282 ~a~~~~~~~~~~ 293 (336)
T 1p5q_A 282 AREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 99 456666643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-07 Score=89.85 Aligned_cols=353 Identities=10% Similarity=-0.009 Sum_probs=187.8
Q ss_pred ccC-ChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC--CChhhHHHHHHHHHhCCC-hHHHHH
Q 048766 116 QLG-SLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID--KDIISWNSVIAASARNGN-LELAFG 191 (525)
Q Consensus 116 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~ 191 (525)
+.| +++.|..+|+.+...- |. |+++.+..+|+.... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 346 4788888888887652 32 899999999999966 688888888877666553 344555
Q ss_pred HHhcC------CCCCcchHHHHHHHHH----hcCChHHHHHHHhcCCCCCcccHHHHHHHHHh---cC------------
Q 048766 192 FLHRL------PNPDTISYNEVINGIA----QFGDIEDAIMILSSMPSPNSSSWNSILTGYVN---RN------------ 246 (525)
Q Consensus 192 ~~~~~------~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~~------------ 246 (525)
+|+.. ...+...|...+..+. ..++++.+.++|++........+..+-..|.. ..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 55554 1234566766666543 24567788888887764211212222222211 11
Q ss_pred --ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc--c-----chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 247 --RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL--S-----ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 247 --~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
.+..|..+++++...--..+...|...+.--... + ..+.+..+|+.++... +....++...+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 1222333333333210001222333333322111 0 1234556677766654 4446666666666777777
Q ss_pred HHHHHHHHHhccC-C-CHhHHHHHHHHHHhcCChhHHHHHHHHHhhC---C-----CCCCC---HhHHHHHHHHHcCCCC
Q 048766 318 VEIADSMFRSLCR-K-NLVTWNAMITGYARNGDLTKVIELFEQLKTV---R-----DLQPD---SVTFLNVLAACSHTDI 384 (525)
Q Consensus 318 ~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-----~~~p~---~~~~~~l~~~~~~~~~ 384 (525)
.+.|..+++.... | +...|. .|....+.++. ++.+.+. . ...+. ...|...+....+.++
T Consensus 229 ~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 7777777776542 2 211222 12221111221 2222211 0 00111 2334455555555566
Q ss_pred CcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC-ChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHH
Q 048766 385 PFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG-EVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISA 461 (525)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 461 (525)
.+.|..+|+++ +. . ..+...|...+..-...| +.+.|..+|+.. ..+.++..|..++......|+.+.|..+|
T Consensus 302 -~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 302 -LELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp -HHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -HHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78888888777 32 1 223344443333333333 578888888775 22222344555666666678888888888
Q ss_pred HHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 462 AEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 462 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+++ +.+...|...+..-...|+.+.+..++++..+
T Consensus 378 er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 877 33566677777777777888888888777764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-08 Score=76.86 Aligned_cols=115 Identities=10% Similarity=-0.024 Sum_probs=66.1
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~ 446 (525)
...+..+...+...|+ +++|.+.+++..+. .+.+...+..++..|...|++++|+..+++. .. +.+...+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGD-YPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTC-SHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3444455555555555 55555555555431 1123455555555555666666666665554 11 223455666666
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
.+...|++++|+..++++++..|.+...+..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666777777777777777777666666666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-08 Score=76.78 Aligned_cols=117 Identities=9% Similarity=-0.009 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~ 446 (525)
...+..+...+...|+ +++|...++++.+. .+.+...+..++..+...|++++|...+++. .. +.+...+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVEN-FEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccC-HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3455556666666676 77777777776643 1234566677777777777777777777765 22 234567777888
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccCh
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNW 488 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 488 (525)
.+...|++++|...++++++..|+++.++..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888999999999999988888888888888888888775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-06 Score=77.12 Aligned_cols=231 Identities=6% Similarity=-0.056 Sum_probs=167.1
Q ss_pred hcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc--chHHHHHHHHHHHHhCCCchHHHHHHHHHHH----HcC-
Q 048766 244 NRNR-VPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS--ALTWGMLIHSCVIKQGLDASIVVASALLDMY----SKC- 315 (525)
Q Consensus 244 ~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 315 (525)
+.|. .++|+++++.++..+ +-+...|+.--.++...+ ++++++.+++.+...+ +-+..+++.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 4444 468888888888752 234445566566666667 8888999888888876 44445555444444 444
Q ss_pred --CCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChh--HHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCC--
Q 048766 316 --GQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLT--KVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIP-- 385 (525)
Q Consensus 316 --g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~-- 385 (525)
++++++.++++.+. +.|..+|+.-.-.+.+.|+++ ++++.++++.+ ..| |...|+.-...+...+..
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccch
Confidence 78899999999886 567778888888888888888 99999999998 445 566676655555555421
Q ss_pred ---cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH-HHHHHHHh-CC----CCchhHHHHHHHHHhcCCChHH
Q 048766 386 ---FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR-AQRMIREL-GF----GSYGVVWRALLSASGACSDLDV 456 (525)
Q Consensus 386 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~ 456 (525)
++++++.++.+... -+-|...|+.+...+.+.|+..+ +..+.+++ .. ..++..+..++..+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 67788888888753 23367888888888888888555 55566665 21 3356788888999999999999
Q ss_pred HHHHHHHHHh-hcCCChhHHHHHHHH
Q 048766 457 ARISAAEVIK-LEGDSDYVYVMLCNL 481 (525)
Q Consensus 457 A~~~~~~~~~-~~p~~~~~~~~l~~~ 481 (525)
|+++++.+.+ .+|.....|...+..
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHhccChHHHHHHHHHHhh
Confidence 9999999997 799887777765543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-08 Score=74.81 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 446 (525)
...+..+...+...|+ +++|.++++++.+. .+.+...+..++..+.+.|++++|...++++ ..+.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGD-YDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 3455555666666666 67777766666543 1234556666667777777777777777665 12234556667777
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777888888888888888888877777777777766544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-08 Score=76.50 Aligned_cols=100 Identities=10% Similarity=-0.066 Sum_probs=79.3
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
.++..+..++..+...|++++|+..|++. .. +.+...+..++..+...|++++|+..++++++.+|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777888888888888888888875 22 23466777788888888888888888888888888888888888888
Q ss_pred HhhccChhHHHHHHHHHHHcCC
Q 048766 482 YTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+...|++++|...+++..+..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHCh
Confidence 8888888888888888876544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=80.49 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=86.5
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALL 445 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 445 (525)
+...+..+...+...|+ +++|++.|++..+. .+.+...|..++.+|.+.|++++|+..+++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKE-YSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45667777888888888 99999999988754 1336778888888999999999999998886 3333 467788888
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 446 SASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
..+...|++++|+..|+++++++|+++..+...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 8888899999999999999999998887665444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=80.97 Aligned_cols=116 Identities=7% Similarity=-0.088 Sum_probs=90.7
Q ss_pred HHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 355 LFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 355 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
.++++.+ ..|+ ...+..+...+...|+ +++|...|+.+... -+.++..|..++.+|...|++++|+..|+++
T Consensus 9 ~~~~al~---~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 9 TIAMLNE---ISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp SHHHHTT---CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHc---CCHhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555555 5563 4566677778888888 99999999888753 1336777888888999999999999999886
Q ss_pred CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 433 GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 433 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
... .++..+..++.++...|++++|+..|++++++.|+++....
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 323 34677888999999999999999999999999998776643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-07 Score=79.89 Aligned_cols=131 Identities=10% Similarity=-0.032 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCC
Q 048766 304 VASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHT 382 (525)
Q Consensus 304 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 382 (525)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..+++..+ ..| +...+..+...+...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHc
Confidence 3455667777888888888888888877778888888888888888888888888877 344 466777777888888
Q ss_pred CCCcchHHHHHHHhhhhhCCC-------------C-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCch
Q 048766 383 DIPFDKVSEYFESMTKDYGIK-------------P-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYG 438 (525)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~-------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 438 (525)
|+ +++|.+.|+++.+...-. | ....+..++.+|.+.|++++|...+++. ...|+.
T Consensus 85 ~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 88 888888888877531111 1 1266777888888888888888888876 444543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.7e-08 Score=75.11 Aligned_cols=101 Identities=12% Similarity=-0.037 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
.+...+..++..+.+.|++++|...+++. ...| +...+..++..+...|++++|+..++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999987 4444 577888899999999999999999999999999999999999999
Q ss_pred HhhccChhHHHHHHHHHHHcCCc
Q 048766 482 YTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
+...|++++|...+++..+..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC
Confidence 99999999999999999887543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-08 Score=76.78 Aligned_cols=96 Identities=3% Similarity=-0.105 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh-------hHHHH
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD-------YVYVM 477 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~ 477 (525)
..+..++..+.+.|++++|++.|++. ...| +...|..++.+|...|++++|++.++++++++|+++ .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999999886 3334 466788888889999999999999999999887554 36777
Q ss_pred HHHHHhhccChhHHHHHHHHHHHcC
Q 048766 478 LCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
++.++...|++++|++.|++..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888999999999998887654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-09 Score=88.68 Aligned_cols=170 Identities=7% Similarity=-0.041 Sum_probs=103.9
Q ss_pred HHHcCCCHHHHHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcc
Q 048766 311 MYSKCGQVEIADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 311 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 387 (525)
.....|+++.+.+.++.-.. .....+..+...+...|++++|+..|++..+ ..|+...+ .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~--------------~ 75 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD---FFIHTEEW--------------D 75 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTTTCTTC--------------C
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHhccccc--------------c
Confidence 33444555555555543321 1234566666777777777777777777776 33332111 0
Q ss_pred hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
.. ....-.. ......+..++.+|.+.|++++|+..+++. .. +.+...+..++.++...|++++|+..|++++
T Consensus 76 ~~--~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 76 DQ--ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp CH--HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hh--hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00 0000000 001356778888899999999999999886 22 3456788889999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHhhccChhHHH-HHHHHHHHcCC
Q 048766 466 KLEGDSDYVYVMLCNLYTSHGNWDVAS-VMRNFMRERGL 503 (525)
Q Consensus 466 ~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 503 (525)
+..|+++.++..++.++...|+.+++. ..+..+...+.
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888 66666655443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-07 Score=82.44 Aligned_cols=139 Identities=11% Similarity=-0.037 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC--hhHHHHHH
Q 048766 336 WNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT--VEHCCSMI 413 (525)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 413 (525)
+-.+...+...|++++|.++|+.+.. ..|+......+...+.+.++ +++|+..|+..... . .|. ...+..+.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r-~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG 178 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAER-WTDVIDQVKSAGKW-P-DKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTC-HHHHHHHHTTGGGC-S-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCC-HHHHHHHHHHhhcc-C-CcccHHHHHHHHH
Confidence 34456777888999999999988877 45654455566667788888 99999999866431 1 111 34677888
Q ss_pred HHHhccCChHHHHHHHHHh--CCC-C--chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 414 RLMGQKGEVWRAQRMIREL--GFG-S--YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~--~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
.++.+.|++++|+..|++. +.. | ....+.....++.+.|+.++|...|+++++.+|+ +.+...|...
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 9999999999999999987 211 4 3446777888899999999999999999999997 7766666544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=8.6e-09 Score=81.87 Aligned_cols=104 Identities=10% Similarity=-0.014 Sum_probs=83.6
Q ss_pred CCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhH
Q 048766 365 LQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVV 440 (525)
Q Consensus 365 ~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 440 (525)
+.|+ ...+..+...+...|+ +++|.+.|+++.+. .| ++..|..++.+|.+.|++++|+..|+++ ...| ++..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 4554 4566677777888888 88999888888753 44 5778888888999999999999999886 3333 4678
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh
Q 048766 441 WRALLSASGACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 441 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
|..++.++...|++++|+..|++++++.|+++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88899999999999999999999999999654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.6e-08 Score=73.25 Aligned_cols=98 Identities=12% Similarity=-0.019 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
+..+..++..+...|++++|...+++. .. +.+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345556666677777777777777765 22 2345566666667777777777777777777777777777777777777
Q ss_pred hccChhHHHHHHHHHHHcCC
Q 048766 484 SHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|...+++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 77777777777777665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=74.87 Aligned_cols=99 Identities=16% Similarity=0.061 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
+...+..++..+...|++++|+..+++. ...|+ ...+..+...+...|++++|+..++++++..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455666666667777777777777665 44444 455666666677777777777777777777777777777777
Q ss_pred HHHhhccChhHHHHHHHHHHHcCC
Q 048766 480 NLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++...|++++|...+++..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777777777777777777666543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-06 Score=77.98 Aligned_cols=161 Identities=8% Similarity=-0.073 Sum_probs=121.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccCC---CHh------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHH
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCRK---NLV------TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFL 373 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~ 373 (525)
..+..+...|++++|..++++.... +.. .+..+...+...+++++|+..++++.+.....++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999987632 111 2334666777788999999999999884312223 23688
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhC-C---CC-ChhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hhH
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYG-I---KP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GVV 440 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~ 440 (525)
.+...|...|+ +++|..+++++.+... . .+ ...++..++..|.+.|++++|+..+++. +..+. ..+
T Consensus 160 ~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 160 AIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 88889999999 9999999999875321 1 11 2347888999999999999999999875 11122 567
Q ss_pred HHHHHHHHhcCCC-hHHHHHHHHHHHhhc
Q 048766 441 WRALLSASGACSD-LDVARISAAEVIKLE 468 (525)
Q Consensus 441 ~~~l~~~~~~~~~-~~~A~~~~~~~~~~~ 468 (525)
+..++..+...|+ +++|++.+++++++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8889999999994 699999999998754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=72.83 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|+..++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 2 23456788889999999999999999999999999999999999999999
Q ss_pred hccChhHHHHHHHHHHHcCC
Q 048766 484 SHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~ 503 (525)
..|++++|...++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.4e-08 Score=77.32 Aligned_cols=113 Identities=10% Similarity=-0.110 Sum_probs=87.0
Q ss_pred CCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHH
Q 048766 365 LQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVW 441 (525)
Q Consensus 365 ~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~ 441 (525)
..|+ ...+..+...+...|+ +++|...|+.+... -+.++..|..++.+|.+.|++++|+..+++. .. +.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 4553 4455566677778888 88999888888753 1335777888888889999999999999886 22 3346677
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
..++.++...|++++|+..|+++++..|+++........
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 888999999999999999999999999988776554333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.6e-08 Score=74.79 Aligned_cols=93 Identities=9% Similarity=-0.096 Sum_probs=64.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CCCCc-h---hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC---hhHHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GFGSY-G---VVWRALLSASGACSDLDVARISAAEVIKLEGDS---DYVYVMLCNL 481 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 481 (525)
..++..+.+.|++++|...|+++ ...|+ . ..+..++..+...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556666777777777777765 22222 2 356666777777777777777777777777776 6667777777
Q ss_pred HhhccChhHHHHHHHHHHHcC
Q 048766 482 YTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+...|++++|...++++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 777777777777777776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.6e-07 Score=80.91 Aligned_cols=165 Identities=7% Similarity=-0.087 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccC---CCH------hHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCC--H
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCR---KNL------VTWNAMITGYARNGDLTKVIELFEQLKTVRD--LQPD--S 369 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~ 369 (525)
..+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567788899999999998876642 111 2344456677888999999999999876321 1111 3
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-------
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS------- 436 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~------- 436 (525)
.+++.+...|...|+ +++|..+++++.+.....|+ ..++..++..|.+.|++++|+..+++. ...+
T Consensus 156 ~~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 478888899999999 99999999998732211222 257889999999999999999999986 1111
Q ss_pred chhHHHHHHHHHhcCCChHHH-HHHHHHHHhhc
Q 048766 437 YGVVWRALLSASGACSDLDVA-RISAAEVIKLE 468 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~ 468 (525)
-..++..++..+...|++++| ...+++++.+.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 156788899999999999999 88899988754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-08 Score=75.71 Aligned_cols=96 Identities=16% Similarity=-0.024 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-------------hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-----
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-------------GVVWRALLSASGACSDLDVARISAAEVIKL----- 467 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 467 (525)
..+...+..+.+.|++++|+..|++. ...|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556667777888888888888875 22222 238888999999999999999999999999
Q ss_pred --cCCChhHH----HHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 468 --EGDSDYVY----VMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 468 --~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+|++..+| ...+.++...|++++|+..|++..+..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999 999999999999999999999987753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=72.61 Aligned_cols=99 Identities=10% Similarity=-0.099 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+...+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|+..++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788899999999999999999987 2 2345778888999999999999999999999999999999999999999
Q ss_pred hhccChhHHHHHHHHHHHcCC
Q 048766 483 TSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~ 503 (525)
...|++++|...+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-07 Score=76.92 Aligned_cols=131 Identities=15% Similarity=0.041 Sum_probs=76.0
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhh---CCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-------CCCC-
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDY---GIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGS- 436 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~- 436 (525)
...+..+...+...|+ +++|...+++..+.. +..+ ....+..++..|...|++++|...+++. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDR-FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 3444445555555555 555555555544311 0111 2344556666666667777666666654 1111
Q ss_pred -chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCCh----hHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 437 -YGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSD----YVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 437 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
....+..+...+...|++++|...++++++.. ..++ .++..++.++...|++++|...+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 12345666677777788888888887777643 2222 2356777788888888888877777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-07 Score=69.94 Aligned_cols=111 Identities=12% Similarity=0.009 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~ 446 (525)
...+..+...+...|+ +++|...++..... .+.++..+..++..+...|++++|...+++. ... .+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGN-IDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc-HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445566666777777 88888888777653 1235667777888888888888888888876 222 34667888888
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
.+...|++++|...++++++..|+++..+..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999988888877664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-08 Score=74.74 Aligned_cols=82 Identities=12% Similarity=0.032 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHh-CC---CCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHH
Q 048766 420 GEVWRAQRMIREL-GF---GSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 420 g~~~~A~~~~~~~-~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
|++++|+..|++. .. .|+ ...+..++..+...|++++|+..++++++.+|+++.++..++.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444455555443 22 122 334455555555556666666666666665565555555566666666666666665
Q ss_pred HHHHHHc
Q 048766 495 RNFMRER 501 (525)
Q Consensus 495 ~~~~~~~ 501 (525)
+++..+.
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.9e-07 Score=72.24 Aligned_cols=114 Identities=9% Similarity=-0.072 Sum_probs=90.0
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVW 441 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 441 (525)
+...+..+...+...|+ +++|.+.|++..+ ..|+ ...+..++..|...|++++|+..+++. ...| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGD-YGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTC-HHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 45666677777778887 8888888888773 3555 567778888888888999988888876 2233 46778
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
..+...+...|++++|...++++++..|+++.++..+..+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999988888877776543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=71.08 Aligned_cols=111 Identities=5% Similarity=-0.098 Sum_probs=82.9
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHH
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSA 447 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 447 (525)
..+......+...|+ +++|+..|++..+. .+.++..|..++.+|.+.|++++|+..+++. ...| +...+..++.+
T Consensus 5 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSD-WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345556666677777 77777777777643 1234667777788888888888888888776 2233 46678888999
Q ss_pred HhcCCChHHHHHHHHHHHhhc------CCChhHHHHHHHHHh
Q 048766 448 SGACSDLDVARISAAEVIKLE------GDSDYVYVMLCNLYT 483 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 483 (525)
+...|++++|+..++++++.+ |+++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999 888877777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=77.47 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=96.0
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHH-HhccCC
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRL-MGQKGE 421 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 421 (525)
...|++++|+..+++..+ ..| +...+..+...+...|+ +++|...|+++.+.. +.++..+..++.+ |...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLR--GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHH---HCCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCC
Confidence 456788888888888877 344 56777888888888888 999999998887641 3356777788888 778888
Q ss_pred h--HHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 422 V--WRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 422 ~--~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
+ ++|...++++ ...| +...+..++..+...|++++|+..++++++..|+++...
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8 9999999886 3233 467788888999999999999999999999999776543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=76.09 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
..|..++.++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3445555555555666666666666666666556666666666666666666666665555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=77.35 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=99.8
Q ss_pred cCCCHHHHHH---HHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CCC-CHhHHHHHHHHHcCCCCCc
Q 048766 314 KCGQVEIADS---MFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD---LQP-DSVTFLNVLAACSHTDIPF 386 (525)
Q Consensus 314 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~~~~~ 386 (525)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+... ..| ...++..+...+...|+ +
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN-W 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-H
Confidence 4566666666 44332223445666677777777777777777776655110 112 24556667777778887 8
Q ss_pred chHHHHHHHhhhhhCCCC-C----hhHHHHHHHHHhccCChHHHHHHHHHh------CCCCc--hhHHHHHHHHHhcCCC
Q 048766 387 DKVSEYFESMTKDYGIKP-T----VEHCCSMIRLMGQKGEVWRAQRMIREL------GFGSY--GVVWRALLSASGACSD 453 (525)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~--~~~~~~l~~~~~~~~~ 453 (525)
++|.+.+++..+...-.+ + ...+..++..+...|++++|...+++. ...+. ...+..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 888888877665321122 2 345677788888889999998888875 11122 2345677888889999
Q ss_pred hHHHHHHHHHHHhhc
Q 048766 454 LDVARISAAEVIKLE 468 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~ 468 (525)
+++|.+.+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998865
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-06 Score=74.81 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 469 GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 469 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+.++.++..|+.+|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 457788888999999999999999999887543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-07 Score=73.72 Aligned_cols=99 Identities=11% Similarity=-0.066 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+...|++++|...+++. .. +.+...+..++..+...|++++|+..++++++..|+++.++..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 445777888999999999999999986 22 3457788889999999999999999999999999999999999999999
Q ss_pred hccChhHHHHHHHHHHHcCCc
Q 048766 484 SHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..|++++|...++++.+..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred HhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999887553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-07 Score=74.36 Aligned_cols=100 Identities=10% Similarity=-0.066 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+...+..++..+.+.|++++|+..|++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566778888888899999999998886 3233 5677888888888899999999999999999998888899999999
Q ss_pred hhccChhHHHHHHHHHHHcCCc
Q 048766 483 TSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
...|++++|+..|++..+..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999988888776543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-07 Score=71.49 Aligned_cols=108 Identities=6% Similarity=-0.074 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC----CCc----hhHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF----GSY----GVVW 441 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~ 441 (525)
.+..+...+...|+ +++|...+++..+. .+.+...+..++..|...|++++|...+++. .. .++ ...+
T Consensus 6 ~~~~l~~~~~~~~~-~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKD-FDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34444445555555 55555555555432 1223444555555555555555555555543 11 111 3344
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
..++..+...|++++|...++++++..| ++.....+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 4455555555555555555555555555 344444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-05 Score=70.56 Aligned_cols=116 Identities=9% Similarity=0.019 Sum_probs=65.9
Q ss_pred HhcCChh-HHHHHHHHHhhCCCCCCH-HHHHHHHHHhccccc----------hHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 048766 243 VNRNRVP-EALHLFGEMQSKDVPMDE-YTFSTMLSGIAGLSA----------LTWGMLIHSCVIKQGLDASIVVASALLD 310 (525)
Q Consensus 243 ~~~~~~~-~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 310 (525)
.+.|.++ +|+++++.++.. .|+. ..|+.--..+...+. ++++..++..+.... +-+..+++.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455554 788888888875 3443 333332222222222 456666666666654 445555555555
Q ss_pred HHHcCC--CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCC-hhHHHHHHHHHhh
Q 048766 311 MYSKCG--QVEIADSMFRSLC---RKNLVTWNAMITGYARNGD-LTKVIELFEQLKT 361 (525)
Q Consensus 311 ~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 361 (525)
++.+.| .++++..+++.+. +.|..+|+.-.-.+...|. ++++++.++++.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 555555 3666666666665 3455566665555556666 4667777777666
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=80.08 Aligned_cols=120 Identities=11% Similarity=-0.084 Sum_probs=90.3
Q ss_pred CCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc--------------hhHHH
Q 048766 381 HTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY--------------GVVWR 442 (525)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~--------------~~~~~ 442 (525)
..+. ++++.+.|+..... .......+..++..+.+.|++++|+..|++. +..|+ ...+.
T Consensus 16 ~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 16 NLYF-QGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhh-ccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3344 55555555432221 1113455677788888999999999999886 22221 26788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++.++...|++++|+..++++++.+|+++.++..++.+|...|++++|+..|++..+..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8899999999999999999999999999999999999999999999999999999987754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-07 Score=70.26 Aligned_cols=115 Identities=8% Similarity=-0.103 Sum_probs=86.6
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALL 445 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~ 445 (525)
+...+..+...+...|+ +++|...|+...+. .+.+...+..++..|...|++++|+..+++. .. +.+...+..++
T Consensus 8 ~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRK-YPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 56677777777888887 88888888887753 1234677788888888888888888888876 22 33467788889
Q ss_pred HHHhcCCChHHHHHHHHHHHhhcCC-----ChhHHHHHHHHHhhc
Q 048766 446 SASGACSDLDVARISAAEVIKLEGD-----SDYVYVMLCNLYTSH 485 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~ 485 (525)
..+...|++++|+..++++++..|+ +......+..+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886 555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-06 Score=82.72 Aligned_cols=165 Identities=12% Similarity=-0.080 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH---hHHHHHHH-HHcCCCCCcchHHHHHHHhhhhh---CCCC-Ch
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS---VTFLNVLA-ACSHTDIPFDKVSEYFESMTKDY---GIKP-TV 406 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~-~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~ 406 (525)
++..++..|...|++++|.+.+..+.+.....++. ......+. .+...|. ++.+.++++...... +..+ ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDS-LDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSC-HHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhCccHHHH
Confidence 36678888999999999999888876522112222 12223333 3445566 899999888765431 2222 25
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-----C--CCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc---CCC----
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-----G--FGSY-GVVWRALLSASGACSDLDVARISAAEVIKLE---GDS---- 471 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~---- 471 (525)
.++..++..|...|++++|..+++++ + ..+. ...+..++..|...|++++|...+++++... |++
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 57788999999999999999999876 1 1222 4567788899999999999999999998865 322
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
...+..++..+...|++++|...+.+..+
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24466788889999999999998887765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-05 Score=70.85 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC----------HHHHHHHHHhcc---CCCHhHHHHHHHHHHhcC--C
Q 048766 284 TWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ----------VEIADSMFRSLC---RKNLVTWNAMITGYARNG--D 348 (525)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~ 348 (525)
++|+.....+...+ |.+..+++.--.++...+. ++++..+++.+. +.+..+|+.-...+...+ +
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46788888888766 4444555543333333332 567888888776 567788888877777877 4
Q ss_pred hhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhcc--------
Q 048766 349 LTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQK-------- 419 (525)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 419 (525)
+++++.+++++.+ ..| |...|+.-...+...|..++++++.++.+.+. -+-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~---~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 126 WARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC----
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccc
Confidence 8999999999999 455 66777766666666676238999999999864 233566777666666554
Q ss_pred ------CChHHHHHHHHHh--CCCCchhHHHHHHHHHhcC-----------CChHHHHHHHHHHHhhcCCChhHHHHHHH
Q 048766 420 ------GEVWRAQRMIREL--GFGSYGVVWRALLSASGAC-----------SDLDVARISAAEVIKLEGDSDYVYVMLCN 480 (525)
Q Consensus 420 ------g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 480 (525)
+.++++++.+... ..+.|..+|..+...+... +.++++++.++++++.+|++.-.+..++.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 4578888888876 3234456666555444443 45889999999999999988655554443
Q ss_pred HH---hhccChhHHHHHHHHHHHcCC
Q 048766 481 LY---TSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 481 ~~---~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.. ...|..+++...++++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCc
Confidence 32 246788899999999987654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-07 Score=86.23 Aligned_cols=144 Identities=7% Similarity=-0.018 Sum_probs=100.1
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
...|..+...+.+.|++++|+..|++..+ ..|+...+ . .+... ... ......|..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~----------~--~~~~~----~~~-----~~~~~~~~nl 323 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS---WLEMEYGL----------S--EKESK----ASE-----SFLLAAFLNL 323 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTTCCSC----------C--HHHHH----HHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HhcccccC----------C--hHHHH----HHH-----HHHHHHHHHH
Confidence 34566666677777777777777777666 33332110 0 01100 000 0124678888
Q ss_pred HHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+.+|.+.|++++|+..++++ .. +.+...+..++.+|...|++++|+..|+++++++|++..++..++.++.+.|++++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 32 33577888999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHHH
Q 048766 491 ASV-MRNFMRE 500 (525)
Q Consensus 491 A~~-~~~~~~~ 500 (525)
|.+ .+.+|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 874 4555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=85.82 Aligned_cols=151 Identities=9% Similarity=-0.066 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHH
Q 048766 333 LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSM 412 (525)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 412 (525)
...+..+...+.+.|++++|+..|++... ..|+... +...++ .+++...+. ...|..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~-~~~~~~~l~-----------~~~~~nl 236 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGK-YQDMALAVK-----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHH-HHHHHHHHH-----------THHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhccc-HHHHHHHHH-----------HHHHHHH
Confidence 34566677777788888888888888888 5665442 223333 333332221 1367888
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH-HhhccChh
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL-YTSHGNWD 489 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~ 489 (525)
+.+|.+.|++++|+..+++. ...| +...|..++.++...|++++|+..|+++++++|+++.++..|..+ ....+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 3334 577888999999999999999999999999999999999999888 44567888
Q ss_pred HHHHHHHHHHHcCCcc
Q 048766 490 VASVMRNFMRERGLRK 505 (525)
Q Consensus 490 ~A~~~~~~~~~~~~~~ 505 (525)
++...|.+|.+..+..
T Consensus 317 ~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHhhCCCCCC
Confidence 8899999887765543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.9e-05 Score=69.14 Aligned_cols=232 Identities=10% Similarity=-0.023 Sum_probs=158.1
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc-chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-C-CH
Q 048766 242 YVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS-ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC-G-QV 318 (525)
Q Consensus 242 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 318 (525)
..+.+..++|++++++++..+ +-+...|+.--.++...+ .+++++.+++.+.... +-+..+++.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 344455678899988888753 334455555555566666 5888999998888776 55666676666666665 6 88
Q ss_pred HHHHHHHHhccC---CCHhHHHHHHHHHHhcCChh--------HHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCC--
Q 048766 319 EIADSMFRSLCR---KNLVTWNAMITGYARNGDLT--------KVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDI-- 384 (525)
Q Consensus 319 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~-- 384 (525)
+++.++++.+.. .|..+|+--.-.+.+.|.++ ++++.++++.+ ..| |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccc
Confidence 899999999874 45667766665555555666 89999999998 445 66777777777766654
Q ss_pred ----CcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCCh--------------------HHHHHHHHHh-CC----
Q 048766 385 ----PFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEV--------------------WRAQRMIREL-GF---- 434 (525)
Q Consensus 385 ----~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~---- 434 (525)
.++++++.++++... .| |...|+.+-..+.+.|+. .+..++..++ +.
T Consensus 219 ~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 146788888887753 45 567777777777766654 3344444444 21
Q ss_pred ---CCchhHHHHHHHHHhcCCChHHHHHHHHHHH-hhcCCChhHHHHHHHH
Q 048766 435 ---GSYGVVWRALLSASGACSDLDVARISAAEVI-KLEGDSDYVYVMLCNL 481 (525)
Q Consensus 435 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 481 (525)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 2556778888899999999999999999987 5688666666554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=7.1e-07 Score=79.53 Aligned_cols=105 Identities=7% Similarity=-0.080 Sum_probs=69.0
Q ss_pred CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHH
Q 048766 368 DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRAL 444 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l 444 (525)
+...+..+...+...|+ +++|...|+++.+. .| +...+..++..|.+.|++++|+..+++. ...|+ ...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRK-YPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34555666666777777 77777777777643 33 5666667777777777777777777765 33333 4566666
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
+.++...|++++|+..|+++++++|+++..+.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 77777777777777777777777766544433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-07 Score=88.48 Aligned_cols=117 Identities=7% Similarity=-0.032 Sum_probs=96.3
Q ss_pred HHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCC
Q 048766 376 LAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACS 452 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~ 452 (525)
...+...|+ +++|.+.++++.+. .| +...+..++.+|.+.|++++|++.+++. ...| +...+..++.++...|
T Consensus 13 g~~~~~~g~-~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 13 ANDYFKAKD-YENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSTTTTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344667787 99999999988854 44 4778889999999999999999999987 3334 4678888999999999
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHHHHHH--HhhccChhHHHHHHH
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVMLCNL--YTSHGNWDVASVMRN 496 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 496 (525)
++++|++.++++++..|+++.++..++.+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999888 889999999999987
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-07 Score=68.76 Aligned_cols=38 Identities=11% Similarity=-0.133 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
++..++..+...|++++|++.|+++++..| ++.....+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 122 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence 556677788889999999999999998888 56555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-07 Score=82.66 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=95.9
Q ss_pred cchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----------------hhHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----------------GVVWRALLSA 447 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~ 447 (525)
+++|.+.++...+. .| +...+..++..|.+.|++++|+..|++. ...|+ ...|..+...
T Consensus 129 ~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 129 FEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 56666666554432 33 4567788888999999999999999886 22233 4788899999
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++.+..+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999988755
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=70.68 Aligned_cols=129 Identities=15% Similarity=-0.061 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh-------CCCC-chh
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGS-YGV 439 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~ 439 (525)
+..+...+...|+ +++|.+.+++..+...-.++ ...+..++..|...|++++|...+++. +..+ ...
T Consensus 12 ~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 12 FGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555 55555555554432110111 135566677777777777777777764 1111 134
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcC------CChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEG------DSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
.+..++..+...|++++|++.++++++..+ .....+..++.++...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566778888899999999999999987642 12456788999999999999999999987754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.8e-07 Score=68.61 Aligned_cols=98 Identities=10% Similarity=-0.070 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC-------hhHHH
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS-------DYVYV 476 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~ 476 (525)
...+..++..+...|++++|...+++. ..+.+...+..++..+...|++++|+..++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356777888888999999999999886 223456777888888888999999999999999988766 77888
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 477 MLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.++.++...|++++|...++++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999998888654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.8e-07 Score=68.48 Aligned_cols=93 Identities=10% Similarity=0.030 Sum_probs=72.7
Q ss_pred CCCCcchHHHHHHHhhhhhCC-CC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHH
Q 048766 382 TDIPFDKVSEYFESMTKDYGI-KP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 457 (525)
.|+ +++|+..|++..+. +. .| +...+..++.+|.+.|++++|+..+++. ...| +...+..++.++...|++++|
T Consensus 3 ~g~-~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGL-EAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCc-HHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 466 88999999988743 10 23 4677888999999999999999999987 3233 467788899999999999999
Q ss_pred HHHHHHHHhhcCCChhHHH
Q 048766 458 RISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~ 476 (525)
+..++++++..|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999998887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-06 Score=65.26 Aligned_cols=105 Identities=17% Similarity=0.004 Sum_probs=77.0
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-h---hHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----hhHHHHH
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-V---EHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----GVVWRAL 444 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l 444 (525)
.+...+...|+ +++|.+.|+.+.+. .|+ . ..+..++..|.+.|++++|+..++++ ...|+ ...+..+
T Consensus 7 ~~a~~~~~~~~-~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGK-YDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHhCC-HHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 44455666777 78888888777654 232 2 46777788888888888888888876 22232 4567788
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
+..+...|++++|+..++++++..|+++.+......+-
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 88899999999999999999999998877766555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-07 Score=70.82 Aligned_cols=93 Identities=11% Similarity=-0.058 Sum_probs=78.7
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC------hhHHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS------DYVYV 476 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 476 (525)
+...+..++..+.+.|++++|++.+++. .. +.+...+..++.++...|++++|+..++++++..|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567788889999999999999999986 22 3357788889999999999999999999999999988 78888
Q ss_pred HHHHHHhhccChhHHHHHHHH
Q 048766 477 MLCNLYTSHGNWDVASVMRNF 497 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~ 497 (525)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988888766543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.5e-06 Score=80.54 Aligned_cols=124 Identities=8% Similarity=0.020 Sum_probs=97.2
Q ss_pred HHcCCCCCcchHHHHHHHhhhhhC--CCC----ChhHHHHHHHHHhccCChHHHHHHHHHh---------CCCCc-hhHH
Q 048766 378 ACSHTDIPFDKVSEYFESMTKDYG--IKP----TVEHCCSMIRLMGQKGEVWRAQRMIREL---------GFGSY-GVVW 441 (525)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~ 441 (525)
.+...|+ +++|..++++..+... +.| ...+++.|+.+|...|++++|+.++++. +..|+ ..++
T Consensus 318 ~~~~qg~-~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 318 KARSEGL-YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHTTTC-HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHhCCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456777 8888888777655321 122 2457888899999999999999988875 33444 4568
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhH---HHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 442 RALLSASGACSDLDVARISAAEVIKL-----EGDSDYV---YVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
+.|+..|...|++++|+.++++++++ +|++|.+ ...+..++...|++++|..+|.++++.-
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999974 5888766 4578888999999999999999998854
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=64.46 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=76.1
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC---chhHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS---YGVVWRAL 444 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l 444 (525)
...+..+...+...|+ +++|...++++.+. .+.+...+..++..+...|++++|...+++. ...| +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGN-YTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4455666677777777 88888888877753 2335667777888888888888888888876 2233 46778888
Q ss_pred HHHHhcC-CChHHHHHHHHHHHhhcCCCh
Q 048766 445 LSASGAC-SDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 445 ~~~~~~~-~~~~~A~~~~~~~~~~~p~~~ 472 (525)
+..+... |++++|++.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888899 999999999999999888654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=80.29 Aligned_cols=137 Identities=6% Similarity=-0.048 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHH
Q 048766 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSM 412 (525)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 412 (525)
..+..+...+.+.|++++|++.|++..+ ..|+.. .... . +... ...| +...|..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~---~~~~~~----------~~~~-~-------~~~~---~~~~~~~~~~~nl 279 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLR---YVEGSR----------AAAE-D-------ADGA---KLQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHHH----------HHSC-H-------HHHG---GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhhcCc----------cccC-h-------HHHH---HHHHHHHHHHHHH
Confidence 3566777778888888888888887776 222110 0000 1 1111 1122 45678889
Q ss_pred HHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+.+|.+.|++++|+..++++ ...| +...+..++.++...|++++|+..|+++++++|+++.++..+..++...++.++
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 5455 467888899999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 048766 491 ASVM 494 (525)
Q Consensus 491 A~~~ 494 (525)
+.+.
T Consensus 360 a~k~ 363 (370)
T 1ihg_A 360 KEKA 363 (370)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=70.97 Aligned_cols=134 Identities=10% Similarity=-0.012 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHH
Q 048766 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413 (525)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 413 (525)
..+......+.+.|++++|+..|.+... ..|... .... ..... +..+ -+.+...|..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~---~~~~~~----------~~~~-~~~~~--~~~~-----~~~~~~~~~nla 70 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALT---RLDTLI----------LREK-PGEPE--WVEL-----DRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHHH----------HTSC-TTSHH--HHHH-----HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHhc----------ccCC-CCHHH--HHHH-----HHHHHHHHHHHH
Confidence 3566667777777777777777777766 211100 0011 11100 0111 122456788899
Q ss_pred HHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCh-hHHHHHHHHHhhccCh
Q 048766 414 RLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNW 488 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~ 488 (525)
.+|.+.|++++|+..+++. ...| +...|..++.++...|++++|+..|+++++++|+++ .+...+..+....++.
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 3334 477888999999999999999999999999999888 5555665555444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-06 Score=63.25 Aligned_cols=65 Identities=18% Similarity=-0.016 Sum_probs=51.0
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+...+..++..+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667777777788888888888888888888888888888888888888888888888777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-05 Score=78.29 Aligned_cols=167 Identities=9% Similarity=-0.043 Sum_probs=128.8
Q ss_pred CHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCC
Q 048766 317 QVEIADSMFRSLC---RKNLVTWNAMITGYARNGD----------LTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHT 382 (525)
Q Consensus 317 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 382 (525)
..++|.+.++.+. +.+..+|+.-...+...|+ ++++++.++++.+ ..| +..+|..-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 3456777777776 3455677776666666666 8899999999988 456 567787777777777
Q ss_pred C--CCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccC-ChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcC-----
Q 048766 383 D--IPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKG-EVWRAQRMIREL-GFGS-YGVVWRALLSASGAC----- 451 (525)
Q Consensus 383 ~--~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~----- 451 (525)
+ + ++++++.++++.+. +| +...|+.-..++.+.| .++++++.++++ ...| +..+|......+.+.
T Consensus 121 ~~~~-~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPN-WARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccc-HHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 7 4 68999999999864 44 5677877777888888 888999998887 4444 466677666555442
Q ss_pred ---------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 452 ---------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 452 ---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+.++++++.+.++++.+|++..+|..+.+++.+.|+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-06 Score=64.54 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=37.7
Q ss_pred hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
.|++.+++..+. -+.+...+..++..|...|++++|+..+++. ...| +...|..++..+...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555554421 1123444555555555555555555555543 1112 23344445555555555555555555555
Q ss_pred hhcC
Q 048766 466 KLEG 469 (525)
Q Consensus 466 ~~~p 469 (525)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3e-06 Score=60.46 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 406 VEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
...+..++..+...|++++|+..+++. .. +.+...+..++..+...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777788888888888888888876 22 2346677788888888888899999888888888888888888888877
Q ss_pred hcc
Q 048766 484 SHG 486 (525)
Q Consensus 484 ~~g 486 (525)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=66.62 Aligned_cols=97 Identities=11% Similarity=-0.025 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHH
Q 048766 372 FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSAS 448 (525)
Q Consensus 372 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 448 (525)
+..+...+...|+ +++|...++++.+. .| +...|..++.++...|++++|+..+++. ...| +...+..++..+
T Consensus 20 ~~~~g~~~~~~g~-~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLAN-LAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455566677777 88888888887753 44 5677778888888888888888888876 3334 456777888888
Q ss_pred hcCCChHHHHHHHHHHHhhcCCCh
Q 048766 449 GACSDLDVARISAAEVIKLEGDSD 472 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~ 472 (525)
...|++++|+..++++++.+|+++
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 888999999999999998888654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.9e-07 Score=70.42 Aligned_cols=120 Identities=8% Similarity=-0.054 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIR 414 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 414 (525)
.+......+.+.|++++|+..|++..+ +.|+...- . - .+. .+.+...|..+..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~--------~--a-~~~-------------~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPE--------E--A-FDH-------------AGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTT--------S--C-CCH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcch--------h--h-hhh-------------ccchHHHHHHHHH
Confidence 345556666777777777777777777 55542100 0 0 000 0012336777777
Q ss_pred HHhccCChHHHHHHHHHh-CC-------CCc-hhHH----HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 415 LMGQKGEVWRAQRMIREL-GF-------GSY-GVVW----RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~-~~-------~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
++.+.|++++|+..+++. .. .|+ ...| ...+.++...|++++|+..|++++++.|++...+..+..+
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 888888888888877765 33 665 5678 8899999999999999999999999999887766544433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.8e-06 Score=67.45 Aligned_cols=134 Identities=15% Similarity=0.059 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC----HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC----h
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD----SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT----V 406 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 406 (525)
++..+...+...|++++|+..+++..+.....++ ..++..+...+...|+ +++|.+.+++..+...-.++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3445555556666666666666655442100011 1345556666666676 77777777665543111111 3
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh-------CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL-------GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..+..++..+...|++++|...+++. +..+ ....+..+...+...|++++|.+.++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888765 1111 134566778888889999999999999988654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=7.5e-07 Score=69.64 Aligned_cols=87 Identities=13% Similarity=-0.006 Sum_probs=61.6
Q ss_pred ccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCC----------hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 418 QKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSD----------LDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
+.+.+++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344556666666654 2222 34555555555555444 56899999999999999999999999999877
Q ss_pred c-----------ChhHHHHHHHHHHHcCCc
Q 048766 486 G-----------NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 486 g-----------~~~~A~~~~~~~~~~~~~ 504 (525)
| ++++|++.|++..+..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 4 899999999988877653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.1e-06 Score=77.54 Aligned_cols=161 Identities=7% Similarity=-0.060 Sum_probs=120.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCCH---------------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC
Q 048766 340 ITGYARNGDLTKVIELFEQLKTVRDLQPDS---------------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP 404 (525)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---------------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 404 (525)
...+.+.|++++|++.|.++.+......+. ..+..+...|...|+ +++|.+++..+.+..+..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-KDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcc
Confidence 345677889999999998888743111111 236778889999999 9999999998876433333
Q ss_pred Ch----hHHHHHHHHHhccCChHHHHHHHHHh-------CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc----
Q 048766 405 TV----EHCCSMIRLMGQKGEVWRAQRMIREL-------GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLE---- 468 (525)
Q Consensus 405 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 468 (525)
+. .+.+.+...+...|++++|..++++. +..+ ...++..++..+...|++++|...++++...-
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 32 23444556667789999999998875 2222 25577888999999999999999999998752
Q ss_pred --CCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 469 --GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 469 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
|....++..++.+|...|++++|..++++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 333567889999999999999999999988653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.7e-06 Score=59.42 Aligned_cols=73 Identities=8% Similarity=-0.049 Sum_probs=62.6
Q ss_pred CCchhHHHHHHHHHhcCCC---hHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCccCCc
Q 048766 435 GSYGVVWRALLSASGACSD---LDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRKEAG 508 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 508 (525)
++++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+.+|+++.+..+. .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4556777777777754444 799999999999999999999999999999999999999999999998776 443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.1e-06 Score=78.69 Aligned_cols=115 Identities=8% Similarity=-0.098 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhc
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (525)
.+..+...+...|+ +++|...|++.... .|+.. .+...|+..++...+. ...|..+..++.+
T Consensus 181 ~~~~~g~~~~~~g~-~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 181 RRKMDGNSLFKEEK-LEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHTCSSSC-CHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34444455555555 66666666555432 23221 1122333333332221 1377888999999
Q ss_pred CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 451 CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 451 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
.|++++|+..++++++.+|+++.++..++.+|...|++++|+..|++..+..+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999998876544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-06 Score=80.76 Aligned_cols=115 Identities=12% Similarity=0.001 Sum_probs=91.7
Q ss_pred cchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc----------------hhHHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY----------------GVVWRALLSA 447 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~ 447 (525)
+++|.+.|+...+. .| ....+..++..|.+.|++++|+..|+++ ...|+ ...|..+..+
T Consensus 250 ~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 250 FEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444322 22 3456777788888888888888888876 21222 4778889999
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++.+..+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.4e-06 Score=77.40 Aligned_cols=96 Identities=9% Similarity=-0.075 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-C----------------CCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-G----------------FGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-~----------------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
.+..++..+.+.|++++|+..++++ . ..|. ...|..+...+.+.|++++|+..++++++.+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3556677777777777777777765 2 2232 56788889999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 470 DSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+++.++..++.+|...|++++|+..|++..+..+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999988754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-06 Score=82.70 Aligned_cols=96 Identities=9% Similarity=-0.081 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+..++..+.+.|++++|++.++++ ...| +...+..++.++.+.|++++|++.++++++++|+++.++..++.+|...|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344556778899999999999987 3334 47888999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCc
Q 048766 487 NWDVASVMRNFMRERGLR 504 (525)
Q Consensus 487 ~~~~A~~~~~~~~~~~~~ 504 (525)
++++|++.+++..+..+.
T Consensus 89 ~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH 106 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999999887553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.7e-06 Score=60.28 Aligned_cols=69 Identities=10% Similarity=-0.157 Sum_probs=63.4
Q ss_pred CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 436 SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 436 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
++...+..++..+...|++++|++.++++++..|+++.++..++.++...|++++|+..+++..+..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 356678888999999999999999999999999999999999999999999999999999999887554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-05 Score=60.64 Aligned_cols=110 Identities=13% Similarity=-0.031 Sum_probs=67.9
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISA 461 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 461 (525)
+++|.++|++..+. + .|.. . |...|...+.+++|.+.|++.-...++.....+...|.. .+|+++|++.|
T Consensus 11 ~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 11 LKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 45555566555543 2 2222 1 555555555555666666655222345555556665655 66777777777
Q ss_pred HHHHhhcCCChhHHHHHHHHHhh----ccChhHHHHHHHHHHHcCC
Q 048766 462 AEVIKLEGDSDYVYVMLCNLYTS----HGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 462 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 503 (525)
+++.+.+ ++.++..|+.+|.. .+++++|..++++..+.|.
T Consensus 85 ~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 85 SKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777663 67777777777777 7777777777777777664
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-05 Score=58.78 Aligned_cols=80 Identities=9% Similarity=0.028 Sum_probs=67.4
Q ss_pred HHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 424 RAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 424 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
+|+..+++. ...| +...+..++..+...|++++|+..++++++.+|+++.++..++.+|...|++++|...|++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466667765 3344 46778888999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 048766 502 GL 503 (525)
Q Consensus 502 ~~ 503 (525)
..
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-05 Score=55.92 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=61.8
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567788888999999999999999999999999999999999999999999999999999988754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.7e-05 Score=73.56 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=72.8
Q ss_pred HHHhccCChHHHHHHHHHh---------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhH---H
Q 048766 414 RLMGQKGEVWRAQRMIREL---------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL-----EGDSDYV---Y 475 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~ 475 (525)
..+...|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++. +|++|.+ +
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999999875 23344 457888999999999999999999999974 4777654 7
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHH
Q 048766 476 VMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
..|+.+|..+|++++|..++++..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00011 Score=57.19 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=93.6
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCCh
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEV 422 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 422 (525)
+++++|+++|++..+.| .|+.. +...|...+. +++|.++|++..+. -++..+..|...|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~-~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQIN-KQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSC-HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCC-HHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccH
Confidence 47889999999999876 44444 5555555555 89999999998764 467788889999988 8999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCCChhHHHHH
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGDSDYVYVML 478 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l 478 (525)
++|.+.|++.-...++.....+...|.. .+++++|+..|+++.+.+. +.+...|
T Consensus 78 ~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l 135 (138)
T 1klx_A 78 RKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGIL 135 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHH
Confidence 9999999998334567778888888887 8999999999999999863 4444433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.96 E-value=3.9e-07 Score=83.15 Aligned_cols=262 Identities=12% Similarity=0.152 Sum_probs=179.7
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHH
Q 048766 68 SVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147 (525)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 147 (525)
.+..|..|..+....+...+|++.|-+. -|+..|..++.++.+.|.+++-...+...++. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4557889999999999988888766322 26678899999999999999999888877665 345566778999
Q ss_pred HHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcC
Q 048766 148 MYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSM 227 (525)
Q Consensus 148 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 227 (525)
+|++.++..+.++++ ..|+..-...+..-|...|.++.|.-+|..+.+ |..|...+.+.|+++.|.+.-++.
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999877655443 336777777888889999999999888888743 223444455667766666544443
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHH
Q 048766 228 PSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASA 307 (525)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 307 (525)
.++.+|-.+-.+|...+++.-|.-.--.++-. || -...++.-|...|.+++-+.+++...... .....+|+-
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTE 268 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 268 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHH
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 56678888888888888877665544333321 11 12234556777777777777777665322 456777777
Q ss_pred HHHHHHcCCCHHHHHHHHHhccC-----------CCHhHHHHHHHHHHhcCChhHHHH
Q 048766 308 LLDMYSKCGQVEIADSMFRSLCR-----------KNLVTWNAMITGYARNGDLTKVIE 354 (525)
Q Consensus 308 l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~ 354 (525)
|.-.|++- ++++..+.++..-. .....|.-++-.|.+-.+++.|..
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 77777765 45555555544321 133467778888888778876654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.7e-05 Score=71.57 Aligned_cols=83 Identities=13% Similarity=-0.043 Sum_probs=67.7
Q ss_pred ccCChHHHHHHHHHh---------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhH---HHHHH
Q 048766 418 QKGEVWRAQRMIREL---------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL-----EGDSDYV---YVMLC 479 (525)
Q Consensus 418 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~ 479 (525)
..|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++. +|++|.+ ++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888887764 23344 357888999999999999999999999974 4666654 88999
Q ss_pred HHHhhccChhHHHHHHHHHHH
Q 048766 480 NLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=57.88 Aligned_cols=81 Identities=15% Similarity=-0.003 Sum_probs=61.9
Q ss_pred HHHHHHhccCChHHHHHHHHHh-CCCC-chh-HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccC
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL-GFGS-YGV-VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
..+..+.+.|++++|+..++++ ...| +.. .+..++..+...|++++|+..|+++++.+|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3466778889999999999886 3334 456 78888888899999999999999999999988877633 55
Q ss_pred hhHHHHHHHHHH
Q 048766 488 WDVASVMRNFMR 499 (525)
Q Consensus 488 ~~~A~~~~~~~~ 499 (525)
+.++...+++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 666666665443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0002 Score=70.27 Aligned_cols=154 Identities=9% Similarity=-0.063 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHcCCCCC---------cchHHHHHHHhhhhhCCCCChhHHHHHHHH
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACSHTDIP---------FDKVSEYFESMTKDYGIKPTVEHCCSMIRL 415 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (525)
....++|++.++++.+ ..|+. ..|+.--..+...+++ ++++++.++.+.+. -+-+...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~---~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445788999999999 67864 4444433333333332 68899999999864 23367788888888
Q ss_pred HhccC--ChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCC-ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc-----
Q 048766 416 MGQKG--EVWRAQRMIREL--GFGSYGVVWRALLSASGACS-DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH----- 485 (525)
Q Consensus 416 ~~~~g--~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 485 (525)
+.+.| +++++++.++++ ..+.+..+|..-...+.+.| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88999 679999999998 33456788888888888888 899999999999999999999999999998774
Q ss_pred ---------cChhHHHHHHHHHHHcCCc
Q 048766 486 ---------GNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 486 ---------g~~~~A~~~~~~~~~~~~~ 504 (525)
+.++++++++++.....+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 6789999999988876543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=62.47 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=64.1
Q ss_pred cchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCC----------hHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcC-
Q 048766 386 FDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGE----------VWRAQRMIREL-GFGSY-GVVWRALLSASGAC- 451 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~- 451 (525)
+++|++.++...+. .| ++..|..+..++...|+ +++|+..|++. ...|+ ...|..++.+|...
T Consensus 18 feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 18 FEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 55555555555532 33 45555555555555544 34777777765 33443 55677777777655
Q ss_pred ----------CChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 452 ----------SDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 452 ----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
|++++|+++|+++++++|++......+- ..++|-+++-.+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHS
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCccccc
Confidence 5899999999999999997653332221 234455555544444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.80 E-value=7.2e-05 Score=54.15 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcCCChh-HHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 443 ALLSASGACSDLDVARISAAEVIKLEGDSDY-VYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
..+..+...|++++|+..++++++.+|+++. ++..++.+|...|++++|+..|++..+..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3456677889999999999999999999999 99999999999999999999999999876543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=53.00 Aligned_cols=82 Identities=13% Similarity=-0.014 Sum_probs=63.0
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC--ChhHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGD--SDYVYVMLC 479 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~ 479 (525)
.++..+..++..|.+.|++++|+..|+++ ...| +...|..++.++...|++++|++.+++++++.|. +......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 35778888999999999999999999987 3333 4668888999999999999999999999998753 334444444
Q ss_pred HHHhhc
Q 048766 480 NLYTSH 485 (525)
Q Consensus 480 ~~~~~~ 485 (525)
..+...
T Consensus 85 ~~l~~~ 90 (100)
T 3ma5_A 85 DAKLKA 90 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=62.31 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=70.6
Q ss_pred hHHHHHHHHHh-CCCCc---hhHHHHHHHHHhc-----CCChHHHHHHHHHHHhhcCCC-hhHHHHHHHHHhh-ccChhH
Q 048766 422 VWRAQRMIREL-GFGSY---GVVWRALLSASGA-----CSDLDVARISAAEVIKLEGDS-DYVYVMLCNLYTS-HGNWDV 490 (525)
Q Consensus 422 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~ 490 (525)
..+|...+++. ...|+ ...|..++..|.. -|+.++|.++|+++++++|+. ..++..+++.+.+ .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666665 44555 5677788888877 489999999999999999964 9999999999888 499999
Q ss_pred HHHHHHHHHHcCCccCCcc
Q 048766 491 ASVMRNFMRERGLRKEAGC 509 (525)
Q Consensus 491 A~~~~~~~~~~~~~~~~~~ 509 (525)
|.+++++.++..+...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999999888755653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=68.01 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=71.0
Q ss_pred HHHHhccCChHHHHHHHHHh---------CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhH---
Q 048766 413 IRLMGQKGEVWRAQRMIREL---------GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKL-----EGDSDYV--- 474 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~--- 474 (525)
+..+.+.|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++. +|++|.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999998875 12222 356788899999999999999999999974 4666654
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 475 YVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
+..|+.+|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78999999999999999999998865
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.001 Score=59.91 Aligned_cols=140 Identities=8% Similarity=-0.062 Sum_probs=76.7
Q ss_pred cCCCHhHHHHHHHHHH--hcC---ChhHHHHHHHHHhhCCCCCCCH-hHHHHHHHHHc----CCCCCcchH---HHHHHH
Q 048766 329 CRKNLVTWNAMITGYA--RNG---DLTKVIELFEQLKTVRDLQPDS-VTFLNVLAACS----HTDIPFDKV---SEYFES 395 (525)
Q Consensus 329 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~----~~~~~~~~a---~~~~~~ 395 (525)
.+.+...|...+++.. ..+ +..+|+.+|++..+ ..|+. ..+..+..++. ..+...... ...++.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456777777775543 333 35789999999999 78873 44443333332 011000111 111111
Q ss_pred hhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 396 MTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
.......+.++..|..+...+...|++++|...++++ ..+|+...|..+...+.-.|++++|.+.+++++.++|..
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1111022345556666655555567777777777665 333555555556666666777777777777777777733
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00067 Score=49.49 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=62.4
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-----C----CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-----G----FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
.+...+..++..+.+.|++..|...++.+ + ..+...++..++.++.+.|+++.|+..+++++++.|+++.+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 35556778888899999999999998875 1 12346778899999999999999999999999999999888
Q ss_pred HHHHH
Q 048766 475 YVMLC 479 (525)
Q Consensus 475 ~~~l~ 479 (525)
...+.
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 66654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00039 Score=53.69 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=69.2
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC---ChHHHHHHHHHh-CCC-C--chhHHHHHHHHHhcCCChHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG---EVWRAQRMIREL-GFG-S--YGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
...+.+-|.+.... + .++..+...+..++.+.+ +.++++.++++. ... | ....+..+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44555566655442 2 478888888999999988 666899999887 323 5 3567788899999999999999
Q ss_pred HHHHHHHhhcCCChhHHH
Q 048766 459 ISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~ 476 (525)
+.++++++.+|+|..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999998776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00054 Score=64.36 Aligned_cols=94 Identities=9% Similarity=0.031 Sum_probs=69.4
Q ss_pred CCCCcchHHHHHHHhhhhh--CCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh---------CCCCc-hhHHHHHH
Q 048766 382 TDIPFDKVSEYFESMTKDY--GIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL---------GFGSY-GVVWRALL 445 (525)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~ 445 (525)
.|+ +++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++.|+
T Consensus 311 ~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKS-PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSC-HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 455 777777777665431 12222 456778888888888888888888775 34455 45688899
Q ss_pred HHHhcCCChHHHHHHHHHHHhh-----cCCChhHHH
Q 048766 446 SASGACSDLDVARISAAEVIKL-----EGDSDYVYV 476 (525)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 476 (525)
..|...|++++|+.++++++++ +|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999984 588887654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00093 Score=62.87 Aligned_cols=98 Identities=7% Similarity=-0.070 Sum_probs=69.8
Q ss_pred HcCCCCCcchHHHHHHHhhhhh--CCCC----ChhHHHHHHHHHhccCChHHHHHHHHHh---------CCCCc-hhHHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDY--GIKP----TVEHCCSMIRLMGQKGEVWRAQRMIREL---------GFGSY-GVVWR 442 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~ 442 (525)
+...|+ +++|..++++..+.. -+.| ...+++.++.+|...|++++|+.+++++ +..|+ ..++.
T Consensus 297 ~~~~g~-~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWK-WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHTTC-HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHhhcc-HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 334555 777777776665321 1122 2456777888888888888888888765 33444 45678
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhh-----cCCChhHHHH
Q 048766 443 ALLSASGACSDLDVARISAAEVIKL-----EGDSDYVYVM 477 (525)
Q Consensus 443 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~ 477 (525)
.++..|...|++++|+.++++++++ +|++|.+-..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8999999999999999999999974 6888877554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00052 Score=53.00 Aligned_cols=83 Identities=5% Similarity=-0.104 Sum_probs=68.5
Q ss_pred hHHHHHHHHHh--CCCCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHhhc-C-CChhHHHHHHHHHhhccChhHHHHH
Q 048766 422 VWRAQRMIREL--GFGSYGVVWRALLSASGACS---DLDVARISAAEVIKLE-G-DSDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 422 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
...+.+.|.+. ...++..+...+.+++.+++ +.++++.+++++++.+ | ++...+..|+.+|.+.|++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555544 33577888888999999988 7779999999999998 7 5688999999999999999999999
Q ss_pred HHHHHHcCCc
Q 048766 495 RNFMRERGLR 504 (525)
Q Consensus 495 ~~~~~~~~~~ 504 (525)
++.+.+..+.
T Consensus 94 ~~~lL~ieP~ 103 (152)
T 1pc2_A 94 VRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCCC
Confidence 9999886553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.44 E-value=4.4e-07 Score=82.82 Aligned_cols=223 Identities=10% Similarity=0.064 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcc
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (525)
.+.+|..|..+....+++.+|++.|-+. .|+..|..++.+..+.|.++.-+..+.-.++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 3557888899988888888887765443 566788999999999999999999998776643 344445678999999
Q ss_pred cCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcC
Q 048766 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRL 196 (525)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 196 (525)
.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..|.+.-++.
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999876655443 47777778888999999999998888876633 333334455555555554433332
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 048766 197 PNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSG 276 (525)
Q Consensus 197 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 276 (525)
.++.||..+..+|...+.+.-|.-.--.+. ....-...++..|-..|.+++.+.+++.-... -+.....|+-|.-.
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniI-vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaIL 272 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 272 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHH
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH
Confidence 344566666666666665554432211111 00111223344556666666666666665532 23445555555555
Q ss_pred hcc
Q 048766 277 IAG 279 (525)
Q Consensus 277 ~~~ 279 (525)
|++
T Consensus 273 YsK 275 (624)
T 3lvg_A 273 YSK 275 (624)
T ss_dssp HHS
T ss_pred HHh
Confidence 544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.11 Score=51.07 Aligned_cols=116 Identities=9% Similarity=-0.014 Sum_probs=70.9
Q ss_pred CChhHHHHHHHHHhhCCCCCCCH--hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDS--VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (525)
.+.+.|...+..........+.. .....+.......+. ..++...+...... ..+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV-TDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC-CHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888876543232222 222333334455553 45666666664432 3343334444555567789999
Q ss_pred HHHHHHHhCCCC-c-hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 425 AQRMIRELGFGS-Y-GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 425 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
|...|+.++..+ + .....-+..++...|+.++|..+|+++..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999998885433 2 33334466677788999999998888865
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0022 Score=57.74 Aligned_cols=137 Identities=15% Similarity=0.058 Sum_probs=93.6
Q ss_pred CCCCHhHHHHHHHHHcC--CCC--CcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHh----ccCC----hH---HHHHH
Q 048766 365 LQPDSVTFLNVLAACSH--TDI--PFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMG----QKGE----VW---RAQRM 428 (525)
Q Consensus 365 ~~p~~~~~~~l~~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~g~----~~---~A~~~ 428 (525)
.+.+...|...+.+... .+. ...+|+.+|+++.+. .|+ ...|..+..+|. ..+. .. .+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34466677776665432 221 268999999999854 776 344444444442 1111 11 12221
Q ss_pred HHHh-CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 429 IREL-GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 429 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
...+ ..+.++..+..+...+...|++++|+..++++++++| +...|..++.++.-.|++++|.+.+++....++..
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1112 2244567777777777778999999999999999998 67888999999999999999999999998887644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0058 Score=45.31 Aligned_cols=90 Identities=11% Similarity=-0.008 Sum_probs=66.2
Q ss_pred cchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH---HHHHHHHh-CCC-C--chhHHHHHHHHHhcCCChHHHH
Q 048766 386 FDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR---AQRMIREL-GFG-S--YGVVWRALLSASGACSDLDVAR 458 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~~~~~~A~ 458 (525)
...+.+-|...... + .++..+-..++.++.+..+..+ ++.+++++ ... | .......+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555544432 3 3777777788888888877666 88888877 323 4 2456677888999999999999
Q ss_pred HHHHHHHhhcCCChhHHHH
Q 048766 459 ISAAEVIKLEGDSDYVYVM 477 (525)
Q Consensus 459 ~~~~~~~~~~p~~~~~~~~ 477 (525)
+.++.+++.+|+|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999998877653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.038 Score=57.15 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=90.7
Q ss_pred HHHhcCCHHHHHH-HHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhc
Q 048766 148 MYGKCGSVEDAIG-VFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSS 226 (525)
Q Consensus 148 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 226 (525)
.....+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.. ..-.......|+++.|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh
Confidence 3445677887777 553332 0122266666777778878777666421 1123445677888888888777
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHH
Q 048766 227 MPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVAS 306 (525)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 306 (525)
+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...+...++.+....+.+.....|. ++
T Consensus 678 ~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 678 E--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred h--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 6 4556788888888888888888888887653 33444444445555555544444444331 12
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 048766 307 ALLDMYSKCGQVEIADSMFR 326 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~ 326 (525)
....+|.+.|++++|.+++.
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 22334445566666655443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.055 Score=40.16 Aligned_cols=141 Identities=8% Similarity=-0.004 Sum_probs=97.8
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
+.-.|..++..++..+.... .+..-++.++--....-+ -+-..+.++.+-+- .|. ..+|+.
T Consensus 17 ~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~-C~y~v~vLd~IGki----FDi----------s~C~Nl 77 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESID-CRYMFQVLDKIGSY----FDL----------DKCQNL 77 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCC-HHHHHHHHHHHGGG----SCG----------GGCSCT
T ss_pred HHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhc-hhHHHHHHHHHhhh----cCc----------HhhhcH
Confidence 34467788888888877662 344556666555555444 55666666665432 221 235666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
......+-.++ .+.......+..+..+|..|+-.+++..++...|.+|.....++.+|.+.|+..+|.+++.+.-++|
T Consensus 78 KrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 78 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 66666665553 3445556667778888999999999998777666689999999999999999999999999999988
Q ss_pred Cc
Q 048766 503 LR 504 (525)
Q Consensus 503 ~~ 504 (525)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0057 Score=43.21 Aligned_cols=68 Identities=3% Similarity=-0.106 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHHHhccCC---hHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 403 KPTVEHCCSMIRLMGQKGE---VWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
+.++..+..++.++...++ .++|..++++. ...| +...+..++..+.+.|++++|+..++++++.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3466777777777765444 68888888886 3334 4667777888888999999999999999999886
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0042 Score=45.11 Aligned_cols=67 Identities=13% Similarity=-0.014 Sum_probs=57.1
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------CCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 437 YGVVWRALLSASGACSDLDVARISAAEVIKLE-------GDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 437 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+..-...++..+...|+++.|...++++++.. +..+.++..|+.++.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455678889999999999999999999863 34567899999999999999999999999987654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.039 Score=57.13 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=79.8
Q ss_pred HhccCchhhhhH-HHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHH
Q 048766 13 SSDLGWDTYCQQ-LHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL 91 (525)
Q Consensus 13 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 91 (525)
....+++++|.+ ++.. ++ +......++..+.+.|.++.|+++.+.- ..-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHH
Confidence 345677777766 4411 11 0112256667777777777777665321 1112334556777777776
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChh
Q 048766 92 FVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDII 171 (525)
Q Consensus 92 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 171 (525)
.+.+ .+...|..+...+.+.++++.|.+.|..+.. +..+...+...|+.+...++.+.....+
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-- 737 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-- 737 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 5432 3556777777777777777777777776532 2234444444555554444333322211
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhc
Q 048766 172 SWNSVIAASARNGNLELAFGFLHR 195 (525)
Q Consensus 172 ~~~~l~~~~~~~~~~~~a~~~~~~ 195 (525)
.++.-..+|.+.|++++|++++.+
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCHHHHHHHHHH
Confidence 112222334445555555444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0066 Score=52.34 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=68.0
Q ss_pred cchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhc-----cCChHHHHHHHHHh-CCCCc--hhHHHHHHHHHhc-CCC
Q 048766 386 FDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQ-----KGEVWRAQRMIREL-GFGSY--GVVWRALLSASGA-CSD 453 (525)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~-~~~ 453 (525)
...|...+++.. .+.|+ ...|..++..|.+ -|+.++|.+.|++. .+.|+ ..++..+...++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345555566555 34665 4467777777777 48888888888876 44452 5566667777776 488
Q ss_pred hHHHHHHHHHHHhhcCCC-hhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 454 LDVARISAAEVIKLEGDS-DYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 454 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.++|.+.+++++...|.. |. . .+...+.-.+|..+++++.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~----~lan~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--N----KLLVILSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--C----HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--h----hHHHHHHHHHHHHHHHHhHH
Confidence 999999999998877642 32 1 22333344566666665543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.027 Score=42.82 Aligned_cols=105 Identities=9% Similarity=0.042 Sum_probs=51.2
Q ss_pred CHhHHHHHHHHHcCCCCCc------chHHHHHHHhhhhhCCCCChh-HHHHHHHH------HhccCChHHHHHHHHHh--
Q 048766 368 DSVTFLNVLAACSHTDIPF------DKVSEYFESMTKDYGIKPTVE-HCCSMIRL------MGQKGEVWRAQRMIREL-- 432 (525)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~-- 432 (525)
|..++-..+...-+.|+ . ++.+++|+++.. .++|+.. .|...+.. +...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~-p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSV-PLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHHTC-SCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555555555565 4 566666666554 4444321 11111111 12235566666666554
Q ss_pred -CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 433 -GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 433 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
...- ...|......-.++|+.+.|.+++.+++.+.|.+...+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 1111 444444444455566666666666666666654444333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.17 Score=40.10 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=62.2
Q ss_pred HHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHH
Q 048766 47 FYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAI 126 (525)
Q Consensus 47 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 126 (525)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344567777777776655 3455677777777777777777777776543 33444444556666666555
Q ss_pred HHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhc
Q 048766 127 HSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEM 165 (525)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 165 (525)
-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544444 2344445555667777777776554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.016 Score=42.93 Aligned_cols=84 Identities=5% Similarity=-0.134 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHH---HHHHHHHHHhhc-C-CChhHHHHHHHHHhhccChhHHHH
Q 048766 421 EVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDV---ARISAAEVIKLE-G-DSDYVYVMLCNLYTSHGNWDVASV 493 (525)
Q Consensus 421 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 493 (525)
....+.+.+.+. ...++..+-..+.+++.++++... ++.+++.+++.+ | ........|+.++.+.|++++|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344445555543 224777888889999998886666 999999999987 5 466778899999999999999999
Q ss_pred HHHHHHHcCCc
Q 048766 494 MRNFMRERGLR 504 (525)
Q Consensus 494 ~~~~~~~~~~~ 504 (525)
+.+.+.+..+.
T Consensus 96 ~~~~lL~~eP~ 106 (126)
T 1nzn_A 96 YVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHhCCC
Confidence 99999887653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.18 Score=40.01 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=67.2
Q ss_pred HHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchH
Q 048766 310 DMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKV 389 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a 389 (525)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+ .+..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~-~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD-VNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC-HHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC-HHHH
Confidence 3455678888888887766 4566788888888888888888888887755 3355555555565 4444
Q ss_pred HHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHhC
Q 048766 390 SEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIRELG 433 (525)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (525)
.++-+....+ | + ++.-...+.-.|+++++.+++.+.+
T Consensus 80 ~kla~iA~~~-g---~---~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTR-E---D---FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHT-T---C---HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-c---c---HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444333222 1 1 3333445556788888888877754
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.13 Score=38.76 Aligned_cols=74 Identities=8% Similarity=0.018 Sum_probs=58.6
Q ss_pred CCChhHHHHHHHHHhccCChH---HHHHHHHHh-CCCC--chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 403 KPTVEHCCSMIRLMGQKGEVW---RAQRMIREL-GFGS--YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.|++.+-..+.+++.+..+.. +++.+++++ ...| .......+.-++.+.|++++|.++.+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 578888888888888877554 678888876 2233 3556777888999999999999999999999998776644
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.34 Score=36.06 Aligned_cols=127 Identities=13% Similarity=-0.014 Sum_probs=70.6
Q ss_pred hHHHHHHH--HhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC----------------
Q 048766 5 VLFHLLRA--SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---------------- 66 (525)
Q Consensus 5 ~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------- 66 (525)
+...|+.+ ..-.|..++..++.....+.. +..-+|=++--....-+=+...++++.+-.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C 83 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVEC 83 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHH
Confidence 44455554 445578888888888777664 222233222222222333333333332211
Q ss_pred -----CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHccc
Q 048766 67 -----PSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135 (525)
Q Consensus 67 -----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 135 (525)
.+....+.-+..+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 84 ~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 2344556666666667777776666666433 2456666666677777777777777777776666664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.042 Score=54.93 Aligned_cols=57 Identities=16% Similarity=-0.004 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..-...|...|+++-|+++.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334556778899999999999999999999999999999999999999999999877
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.056 Score=40.20 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=57.5
Q ss_pred CCCChhHHHHHHHHHhccCCh---HHHHHHHHHh-CCCC--chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 402 IKPTVEHCCSMIRLMGQKGEV---WRAQRMIREL-GFGS--YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 402 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
-.|++.+-..+++++.+..+. .+++.+++++ ...| ....+..+..++.+.|++++|.++.+.+++.+|+|..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 356777777788888877654 4677888776 3234 355677888899999999999999999999999887765
Q ss_pred H
Q 048766 476 V 476 (525)
Q Consensus 476 ~ 476 (525)
.
T Consensus 116 ~ 116 (134)
T 3o48_A 116 A 116 (134)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=95.66 E-value=1 Score=39.59 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=88.3
Q ss_pred hhhhhHHHHHHHHhCCCc-hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHH----HH
Q 048766 19 DTYCQQLHCYILKSGFLS-NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNL----FV 93 (525)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~----~~ 93 (525)
++...+-++.-++.|--- -...|.++..-|.+.+++++|++++.. -...+.+.|+...|.++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 333333444444444111 234556677778888899999886542 33445667887766664 55
Q ss_pred HHHhcCCCCCHhhHHHHHHHHcccCChH-HHHHHHHHHH----Hccc--CCCcchhhHHHHHHHhcCCHHHHHHHHhhcc
Q 048766 94 ELERSEIYADAYSFTSALAACGQLGSLQ-LGMAIHSKIV----KYSL--ERGVVIANCLIDMYGKCGSVEDAIGVFGEMI 166 (525)
Q Consensus 94 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 166 (525)
...+.+++++......++..+.....-+ .-.++++.++ +.|- .-++.....+...|.+.|++.+|+.-|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5666788899888888887776543211 1233333333 3332 1255667777788888888888877664222
Q ss_pred CCChhhHHHHHHHHHh
Q 048766 167 DKDIISWNSVIAASAR 182 (525)
Q Consensus 167 ~~~~~~~~~l~~~~~~ 182 (525)
..|...+..++.-+..
T Consensus 162 ~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 2234455544444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.15 Score=38.80 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=47.0
Q ss_pred CCCHhHHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCCCCCHh----HHHHH--HH-HHcCCCCCcchHHHHHHHh
Q 048766 330 RKNLVTWNAMITGYARNGDL------TKVIELFEQLKTVRDLQPDSV----TFLNV--LA-ACSHTDIPFDKVSEYFESM 396 (525)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~----~~~~l--~~-~~~~~~~~~~~a~~~~~~~ 396 (525)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+ -. .+...++ .++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D-~d~aR~vy~~a 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQE-PDDARDYFQMA 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHC-GGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 34555555555555555666 5566666665553 444321 01000 00 0111234 66666666665
Q ss_pred hhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh
Q 048766 397 TKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL 432 (525)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (525)
... .-.. ...|...++.-.+.|++..|.+++.+.
T Consensus 87 ~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 87 RAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 443 1111 444544555555666666666666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.13 Score=38.88 Aligned_cols=71 Identities=8% Similarity=-0.109 Sum_probs=58.6
Q ss_pred CCCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHhhcCC-ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 434 FGSYGVVWRALLSASGACS---DLDVARISAAEVIKLEGD-SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..|+..+-..+.+++.++. +..+++.+++.+++..|. .......|+..+.+.|++++|+++.+.+.+..+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3577777778888888776 456789999999998884 5667888999999999999999999999876553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.53 E-value=2.6 Score=43.26 Aligned_cols=257 Identities=13% Similarity=0.042 Sum_probs=133.8
Q ss_pred HHHHhCCChHHHHHHHhcCCC----CCcc--hHHHHHHHHHhcCChHHHHHHHhcCCC-CC----------cccHHHHHH
Q 048766 178 AASARNGNLELAFGFLHRLPN----PDTI--SYNEVINGIAQFGDIEDAIMILSSMPS-PN----------SSSWNSILT 240 (525)
Q Consensus 178 ~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~~~~~~l~~ 240 (525)
-+....|+.++++.++..... .+.. .-..+.-+....|..+++..++..... ++ ...-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 346678888888888888733 2222 222333445556665566665554432 22 111222333
Q ss_pred HHHhcCC-hhHHHHHHHHHhhCCCCCCHHHHH--HHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC
Q 048766 241 GYVNRNR-VPEALHLFGEMQSKDVPMDEYTFS--TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQ 317 (525)
Q Consensus 241 ~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (525)
+.+-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333333 2456666666654321 1111112 22333456677777777777666532 2222223333334446778
Q ss_pred HHHHHHHHHhcc-CCCHh-HHH---HHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHH
Q 048766 318 VEIADSMFRSLC-RKNLV-TWN---AMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEY 392 (525)
Q Consensus 318 ~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~ 392 (525)
.+.+..+++.+. ..++. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+ .+.+.++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~-~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRD-YTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSS-CSSHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCC-HHHHHHH
Confidence 777777777765 23333 232 23455667788777777888877632 2233333333334445666 6667777
Q ss_pred HHHhhhhhCCCCChhHHHHHHHHHhccCCh-HHHHHHHHHhCCCCchhHH
Q 048766 393 FESMTKDYGIKPTVEHCCSMIRLMGQKGEV-WRAQRMIRELGFGSYGVVW 441 (525)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 441 (525)
++.+.+ ...|.+..-..+.-+....|.. .+|+.++..+...++..+-
T Consensus 617 v~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 766654 2244444444444444445544 5777788877444554433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.074 Score=39.55 Aligned_cols=71 Identities=8% Similarity=-0.109 Sum_probs=58.1
Q ss_pred CCCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHhhcCC-ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 434 FGSYGVVWRALLSASGACS---DLDVARISAAEVIKLEGD-SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 434 ~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..|++.+-..+.+++.++. +..+++.+++.+++.+|. ....+..|+.++.+.|++++|+++.+.+.+..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3566777777888887766 456789999999998884 4677889999999999999999999999876543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.73 E-value=4.4 Score=41.62 Aligned_cols=255 Identities=10% Similarity=-0.023 Sum_probs=137.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC----Cc--ccHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCC---H--HHHHHH-
Q 048766 208 INGIAQFGDIEDAIMILSSMPSP----NS--SSWNSILTGYVNRNRVPEALHLFGEMQSKDV--PMD---E--YTFSTM- 273 (525)
Q Consensus 208 ~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~---~--~~~~~l- 273 (525)
.-+....|+.+++..++...... +. ..-..+.-+.+..|..+++..++.......- .-+ . ..-.++
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34566788999999999887641 11 1223344456677777778888877665321 011 1 111222
Q ss_pred -HHHhccccchHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCCHHHHHHHHHhccC-CCHhHH--HHHHHHHHhcCC
Q 048766 274 -LSGIAGLSALTWGMLIHSCVIKQGLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCR-KNLVTW--NAMITGYARNGD 348 (525)
Q Consensus 274 -~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~l~~~~~~~~~ 348 (525)
.-++...++ +++...+..+....... ....-.++...+...|+.+....++..+.. .+.... -.+.-++...|+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 222333333 34455555554433111 112233445556678888888888776642 222222 333344557899
Q ss_pred hhHHHHHHHHHhhCCCCCCCHhHHH--HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHH
Q 048766 349 LTKVIELFEQLKTVRDLQPDSVTFL--NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQ 426 (525)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (525)
.+.+..+.+.+... ..|-...-. .+.-+|+..|+ .....+++..+..+ ...++.....+.-++...|+.+.+.
T Consensus 540 ~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn-~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 540 QELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGN-NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCC-HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 99999999988873 233322222 33445677776 55555588877652 2333443344444555577777777
Q ss_pred HHHHHh--CCCCchhHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcC
Q 048766 427 RMIREL--GFGSYGVVWRALLSASGACSD-LDVARISAAEVIKLEG 469 (525)
Q Consensus 427 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p 469 (525)
++++.+ ..+|....-..+..+....|. ..+++..+.++.. ++
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~ 659 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DP 659 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CC
Confidence 777765 223443333333333333333 3677888887753 44
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.26 Score=38.40 Aligned_cols=86 Identities=12% Similarity=-0.079 Sum_probs=55.7
Q ss_pred HHHHhccCChHHHHHHHHHh----CCCCc-------hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc---CC--------
Q 048766 413 IRLMGQKGEVWRAQRMIREL----GFGSY-------GVVWRALLSASGACSDLDVARISAAEVIKLE---GD-------- 470 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~----~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~-------- 470 (525)
++.+...|.++.|+-+.+-+ +.+|+ ..++..++.++...|++.+|...|++++... |.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 44555666666666665543 11222 1244556667777777777777777765532 11
Q ss_pred --------------ChhHHHHHHHHHhhccChhHHHHHHHHH
Q 048766 471 --------------SDYVYVMLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 471 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
+.+.-+.++.+|.+.|++++|+.+++.+
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 2256678999999999999999998754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.09 Score=48.66 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH-----cCCccCCcc
Q 048766 442 RALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE-----RGLRKEAGC 509 (525)
Q Consensus 442 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 509 (525)
..++..+...|++++|+..++.++..+|-+...+..|+.++.+.|+..+|++.|+++.+ .|+.|.|..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556666788888888888888888888888888888888888888888888887654 477666543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.65 E-value=2.2 Score=37.80 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHH----HHHhhCCCCCCCHhHHHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELF----EQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
.+|.++..=|.+.+++++|.+++-.. ...+.+.|+...+.++- +-..+.+ +++|......++..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 45666777788889999998876543 23445556655544433 4445555 77787777777777
Q ss_pred HcCCCCCcc-hHHHHHHHhhh---hhCC--CCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCC
Q 048766 379 CSHTDIPFD-KVSEYFESMTK---DYGI--KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACS 452 (525)
Q Consensus 379 ~~~~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 452 (525)
+..... -+ .=..+.+++.+ .+|- .-++.....++..|.+.+++.+|...|- .+..+++..+..++.-+...+
T Consensus 104 ~~~~~~-~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 104 LRLFQP-GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HTTSCT-TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTS
T ss_pred HHhCCC-CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhc
Confidence 665543 11 11223333322 1132 2367788888999999999999988873 344444456655554444433
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHH-HHHHHhhccChhHHHHHHHHHHHc
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVM-LCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
. |.....|.. ..--|...++...|..+++...+.
T Consensus 182 ~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 182 E---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp C---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 323333333 333466778899999888777654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.76 E-value=2.7 Score=38.52 Aligned_cols=89 Identities=15% Similarity=-0.124 Sum_probs=60.3
Q ss_pred HHHHHHhccCChHHHHHHHHHh----CCCCc----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc---CCChhH----H
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL----GFGSY----GVVWRALLSASGACSDLDVARISAAEVIKLE---GDSDYV----Y 475 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~----~ 475 (525)
.++..|...|++.+|.+++.++ ....+ ..++..-+..|...|++.++...+.++.... |.+|.. .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5788888889999988888776 21111 1233444567778889999999988887643 224433 3
Q ss_pred HHHHHHHh-hccChhHHHHHHHHHH
Q 048766 476 VMLCNLYT-SHGNWDVASVMRNFMR 499 (525)
Q Consensus 476 ~~l~~~~~-~~g~~~~A~~~~~~~~ 499 (525)
..-|..+. ..++|.+|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 34455667 7899999888876654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.40 E-value=4 Score=36.21 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHH----HHHHhcCCCCCHhhHHHHHHHH
Q 048766 39 FVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLF----VELERSEIYADAYSFTSALAAC 114 (525)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~ 114 (525)
..|.++..-|.+.+++++|++++- .-...+.+.|+...|.++. +.+.+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 355566677888899999988654 2344556678876665554 5566778899988888888877
Q ss_pred cccCChH-HHHHHHHHHH----Hcc--cCCCcchhhHHHHHHHhcCCHHHHHHHH
Q 048766 115 GQLGSLQ-LGMAIHSKIV----KYS--LERGVVIANCLIDMYGKCGSVEDAIGVF 162 (525)
Q Consensus 115 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 162 (525)
.....-+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|+.-|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6654321 1122333333 223 1224555666667777777777776666
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.31 E-value=5.4 Score=37.47 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-----CCCCc---hhHHHHHHHHHhcCCChHHHHHHHHHHHh---hcCCCh----h
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-----GFGSY---GVVWRALLSASGACSDLDVARISAAEVIK---LEGDSD----Y 473 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~p~~~----~ 473 (525)
...|+..|...|++.+|..++.++ +..+. ...+...+..|...+|+.+|...+.++.. ..|.++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677777888888888888776 22222 23455556777778888888888887643 123233 2
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
.+...+..+...++|.+|-+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 355677777788888888877776644
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.61 Score=36.31 Aligned_cols=136 Identities=13% Similarity=0.001 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCH-------hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChh
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDS-------VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVE 407 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 407 (525)
.+-.-+..+...|.++.|+-+...+....+.+|+. .++..+..++...++ +.+|...|+........-+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e-yrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE-YRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 34444566667777777777776654422123331 245566666777777 7777777777544322211111
Q ss_pred -HHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 048766 408 -HCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY 482 (525)
Q Consensus 408 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 482 (525)
....+. ....... ......+...-..+...|.+.|++++|+..++.+-...- ++.+-..|++.|
T Consensus 101 s~~~~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-TPKINMLLANLY 165 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-CHHHHHHHHHHC
T ss_pred Ccccccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-CHHHHHHHHHHh
Confidence 100000 0000000 001112334444566677778888888887776544433 556666666655
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=7.2 Score=38.31 Aligned_cols=449 Identities=10% Similarity=-0.002 Sum_probs=226.5
Q ss_pred ccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC-CCc-ccHHHHHHHHHhcCChHHHHHHH
Q 048766 15 DLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ-PSV-VSWNSLISGYVQSGKYRKALNLF 92 (525)
Q Consensus 15 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~ll~~~~~~~~~~~A~~~~ 92 (525)
+.|+...+.++-..+....+.|- ..|..|...+ .....+++...+++.+. |-. ..-+.-+..+.+.+++...+..+
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~ 95 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS 95 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhc
Confidence 45666666665554432222111 2333333222 22356666666666654 222 12234455566677777666544
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhh
Q 048766 93 VELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIIS 172 (525)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 172 (525)
.. .+.+...-.....+....|+...|......+-..| ...+..+..++..+.+.|.+....
T Consensus 96 ~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~------------- 156 (618)
T 1qsa_A 96 PE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA------------- 156 (618)
T ss_dssp CS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH-------------
T ss_pred cC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH-------------
Confidence 32 12334434445556666777777777666666665 445667777777777666543221
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---cHHHHHHHHHhcCChh
Q 048766 173 WNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSS---SWNSILTGYVNRNRVP 249 (525)
Q Consensus 173 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 249 (525)
.-.-+......|+...|..+...+..........++..+.+ ...+........ ++.. .+..-+.-+.+ .+.+
T Consensus 157 ~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~ 231 (618)
T 1qsa_A 157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAE 231 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHH
Confidence 11112344556666777766666632221222333333322 223333332221 2211 11112223333 4789
Q ss_pred HHHHHHHHHhhCCCCCCHHHH----HHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHH
Q 048766 250 EALHLFGEMQSKDVPMDEYTF----STMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMF 325 (525)
Q Consensus 250 ~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 325 (525)
.|...+....... ..+.... ..+.......+...++...+....... .+.......+....+.|+++.|...|
T Consensus 232 ~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~ 308 (618)
T 1qsa_A 232 NARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWL 308 (618)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998886543 2333322 233334445553445555555544333 33333444555566789999999999
Q ss_pred HhccCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCC
Q 048766 326 RSLCRKN---LVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGI 402 (525)
Q Consensus 326 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~ 402 (525)
+.+.... ....-=+..++...|+.++|..+|+.+... . +|..++.+- +.|.++.-... .... ..
T Consensus 309 ~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~---~fYg~lAa~-~Lg~~~~~~~~---~~~~--~~ 375 (618)
T 1qsa_A 309 ARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R---GFYPMVAAQ-RIGEEYELKID---KAPQ--NV 375 (618)
T ss_dssp HHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C---SHHHHHHHH-HTTCCCCCCCC---CCCS--CC
T ss_pred HHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C---ChHHHHHHH-HcCCCCCCCCC---CCCh--hH
Confidence 9997432 223334566778899999999999998751 1 233333221 22221110000 0000 00
Q ss_pred CCC--hhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC---CChhHHHH
Q 048766 403 KPT--VEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEG---DSDYVYVM 477 (525)
Q Consensus 403 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~ 477 (525)
... ......-+..+...|....|...+..+....+......+.......|.++.++....+....+. .-|..|..
T Consensus 376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~ 455 (618)
T 1qsa_A 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYND 455 (618)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHH
T ss_pred HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHH
Confidence 000 0011223456678899999998888762223334344455555678888888766654332210 01233455
Q ss_pred HHHHHhhccChhHHHHHHHHHHHcCCcc
Q 048766 478 LCNLYTSHGNWDVASVMRNFMRERGLRK 505 (525)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 505 (525)
++..+.+.-.++.++-+---.++.+..|
T Consensus 456 ~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 456 LFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 5555555555555544433334555444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=92.61 E-value=1.8 Score=30.11 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=64.7
Q ss_pred CchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 048766 17 GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96 (525)
Q Consensus 17 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 96 (525)
.+.++|.-+-+.+...+. ...+...-+..+...|++++|..+.+....||...|-++-.. +.|--+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 467889999888887774 444444445557788999999999999999999999877664 6677788887777777
Q ss_pred hcCCCCCHhhHH
Q 048766 97 RSEIYADAYSFT 108 (525)
Q Consensus 97 ~~~~~p~~~~~~ 108 (525)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 44444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.58 E-value=1.6 Score=30.20 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=65.8
Q ss_pred CchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 048766 17 GWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELE 96 (525)
Q Consensus 17 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 96 (525)
.+.++|.-+-+.+...+. ...+...-+..+...|++++|..+.+....||...|-++-.. +.|--+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 467889999888887774 444444445557788999999999999999999999877664 7788888888887887
Q ss_pred hcCCCCCHhhHH
Q 048766 97 RSEIYADAYSFT 108 (525)
Q Consensus 97 ~~~~~p~~~~~~ 108 (525)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45544444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=0.71 Score=39.27 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=29.9
Q ss_pred HhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcC
Q 048766 416 MGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 469 (525)
..+.|++++|++.+..- ...| |...-..|+..++-.|++++|..-++-+.+++|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 44556666666655543 2223 333444455556666666666666666666666
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=91.00 E-value=5.7 Score=32.56 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=3.3
Q ss_pred HHHHHHhcC
Q 048766 145 LIDMYGKCG 153 (525)
Q Consensus 145 l~~~~~~~g 153 (525)
.+..+.+.|
T Consensus 39 A~~~L~~~~ 47 (211)
T 3ltm_A 39 AAYALGKIG 47 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.75 E-value=8.2 Score=33.96 Aligned_cols=171 Identities=12% Similarity=0.054 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHH----HHHHhhCCCCCCCHhHHHHHHHH
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIEL----FEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
..|.++..=|.+.+++++|.+++... ...+.+.|+...|.++ ++-..+.+ .+++......++..
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 45566677788888888888876543 3345566776655553 44445555 78888777777777
Q ss_pred HcCCCCCcchHHHHHHHhhhhh---CC--CCChhHHHHHHHHHhccCChHHHHHHHHHhCCCCchhHHHHHHHHHhcC--
Q 048766 379 CSHTDIPFDKVSEYFESMTKDY---GI--KPTVEHCCSMIRLMGQKGEVWRAQRMIRELGFGSYGVVWRALLSASGAC-- 451 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-- 451 (525)
+..-......=.++++++.+-. |- .-++.....++..|.+.|++.+|...|- .+...++..+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcC
Confidence 6653321222234444443211 21 2367788888999999999999888775 33222445555444444333
Q ss_pred -CChHHHHHHHHHHHhhcCCChhHHH-HHHHHHhhccChhHHHHHHHHHHHc
Q 048766 452 -SDLDVARISAAEVIKLEGDSDYVYV-MLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 452 -~~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
|...+ ...|. ...--|.-.|+...|..+++...+.
T Consensus 181 ~~~~~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 181 DIEDST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCCHHH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCcch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33332 22222 2222355678888999888877654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.73 E-value=3 Score=28.93 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
..++|..|-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666655553 33333334556788999999999999999999998877654 577888888888888887
Q ss_pred CCCCCCCHhHHHHH
Q 048766 362 VRDLQPDSVTFLNV 375 (525)
Q Consensus 362 ~~~~~p~~~~~~~l 375 (525)
.| .|....|..-
T Consensus 97 sg--~p~~q~Fa~g 108 (115)
T 2uwj_G 97 SS--DPALADFAAG 108 (115)
T ss_dssp CS--SHHHHHHHHH
T ss_pred CC--CHHHHHHHHH
Confidence 76 6666555443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.41 E-value=3.3 Score=28.82 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
..++|..|-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666665553 33333334556788999999999999999999998877654 467888888888888877
Q ss_pred CCCCCCCHhHHHHH
Q 048766 362 VRDLQPDSVTFLNV 375 (525)
Q Consensus 362 ~~~~~p~~~~~~~l 375 (525)
.| .|....|..-
T Consensus 98 sg--~p~~q~Fa~g 109 (116)
T 2p58_C 98 SQ--DPRIQTFVNG 109 (116)
T ss_dssp CC--CHHHHHHHHH
T ss_pred CC--CHHHHHHHHH
Confidence 76 6666555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.45 E-value=2.9 Score=41.99 Aligned_cols=121 Identities=9% Similarity=0.081 Sum_probs=73.2
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHH-H-HHHHHHhcccc-chHHHHHHHHHHHHh------CCCc-h----
Q 048766 237 SILTGYVNRNR-VPEALHLFGEMQSKDVPMDEYT-F-STMLSGIAGLS-ALTWGMLIHSCVIKQ------GLDA-S---- 301 (525)
Q Consensus 237 ~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~-~-~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~---- 301 (525)
.++..+...++ .+.|..+|+++... .|.... + ..++..+...+ +--+|.+++.+..+. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444555 57799999998876 333222 2 23333333332 222344444433321 1111 1
Q ss_pred ------HHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 048766 302 ------IVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQL 359 (525)
Q Consensus 302 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (525)
......=.+.+...|+++.|.++-++.. +.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1122222444667899999999998886 456789999999999999999999998876
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.29 E-value=2.6 Score=29.45 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH
Q 048766 85 YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (525)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-.+..- .....+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33455556666666677777777777777777777777777777665442 23344565554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.24 E-value=14 Score=39.64 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=111.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-------------------
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP------------------- 367 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p------------------- 367 (525)
.++..+...+..+.+.++..-+ +.++..--.++.++...|++++|.+.|++... | +.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~-~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-V-LYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-S-CTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-h-hcccchhhhhhccccccccccc
Confidence 4555666677777776655443 44544445567778888888888888877532 1 110
Q ss_pred ----CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC---hhHHHHHHHHHhccCChHHHHHHHHHhCC-CCchh
Q 048766 368 ----DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT---VEHCCSMIRLMGQKGEVWRAQRMIRELGF-GSYGV 439 (525)
Q Consensus 368 ----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 439 (525)
-..-|..++..+.+.+. ++.+.++-+...+..+-.++ ...|..+.+.+...|++++|...+-.++. .-...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~-~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESA-YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred ccccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 11235667777777787 88888887776654111111 22577788888889999999888877621 12244
Q ss_pred HHHHHHHHHhcCCC------------hHHHHHHHHH-HHhh-cCCC-hhHHHHHHHHHhhccChhHHHHH-HHHHH
Q 048766 440 VWRALLSASGACSD------------LDVARISAAE-VIKL-EGDS-DYVYVMLCNLYTSHGNWDVASVM-RNFMR 499 (525)
Q Consensus 440 ~~~~l~~~~~~~~~------------~~~A~~~~~~-~~~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 499 (525)
.+..|+..++..|. .++..+++.. +... +|.+ |..|..|=.-+...|++-.|-.+ |+.+.
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 55566655554443 3444444432 2222 3433 34455555556667777766554 55443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=88.50 E-value=9.1 Score=31.28 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=3.3
Q ss_pred HHHHHHhcC
Q 048766 207 VINGIAQFG 215 (525)
Q Consensus 207 l~~~~~~~~ 215 (525)
.+..+.+.+
T Consensus 39 A~~~L~~~~ 47 (211)
T 3ltm_A 39 AAYALGKIG 47 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=7.7 Score=35.65 Aligned_cols=58 Identities=12% Similarity=-0.070 Sum_probs=42.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
...++..+...|++++|+..+..+ ... -+...+..++.++...|+..+|++.|++..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667777888888888777776 222 3456778888888888888888888887654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=87.08 E-value=11 Score=30.53 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=6.7
Q ss_pred CCcchHHHHHHHHHhcCC
Q 048766 199 PDTISYNEVINGIAQFGD 216 (525)
Q Consensus 199 ~~~~~~~~l~~~~~~~~~ 216 (525)
++..+-...+.++...++
T Consensus 57 ~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGD 74 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhhCC
Confidence 333333333333333333
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.84 E-value=5.4 Score=37.25 Aligned_cols=91 Identities=11% Similarity=-0.068 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh-----CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhc--CCChhH----HH
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL-----GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLE--GDSDYV----YV 476 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~----~~ 476 (525)
....+++.|.+.|++++|.+.+.++ +.......+...+..+...+|+..+...+.++.... ..++.. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3445555666666666666666554 222223444555555555566666666666655432 112221 11
Q ss_pred HHHHHHhhccChhHHHHHHHHH
Q 048766 477 MLCNLYTSHGNWDVASVMRNFM 498 (525)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~ 498 (525)
..+..+...++|.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2333344556666665555444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.94 E-value=22 Score=38.15 Aligned_cols=86 Identities=5% Similarity=-0.047 Sum_probs=58.3
Q ss_pred hHHHHHHHHcccCChHHHHHHHHHHHHcccCCCc----chhhHHHHHHHhcCCHHHHHHHHhhccCC--ChhhHHHHHHH
Q 048766 106 SFTSALAACGQLGSLQLGMAIHSKIVKYSLERGV----VIANCLIDMYGKCGSVEDAIGVFGEMIDK--DIISWNSVIAA 179 (525)
Q Consensus 106 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~ 179 (525)
-|..++..+.+.+.++.+.+.-...++...+.+. ..|..+.+.+...|++++|-..+-.+... -......++..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4677777777888888888777766665322221 25677788888888888888887766443 23466777777
Q ss_pred HHhCCChHHHHH
Q 048766 180 SARNGNLELAFG 191 (525)
Q Consensus 180 ~~~~~~~~~a~~ 191 (525)
++..|..+.-..
T Consensus 981 lce~~~~~~L~~ 992 (1139)
T 4fhn_B 981 LTKQGKINQLLN 992 (1139)
T ss_dssp HHHHCCHHHHHH
T ss_pred HHhCCChhhhhC
Confidence 777777655443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.88 E-value=2.9 Score=35.61 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=22.9
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
.+.|+.+++++....-.+ ..| |...-..++..+|-.|+ +++|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR---~~P~da~~R~~LfqLLcv~G~-w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGD-FERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 344455555554444444 223 33333344444555555 555555444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.76 E-value=8.2 Score=27.04 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 421 EVWRAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 421 ~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
|.-+..+-++.+ ..-|++.+..+.+.+|.+.+|+..|+++++-+...-.+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 444555555554 66788899999999999999999999999887765443445555443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.85 E-value=6.4 Score=29.24 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHH
Q 048766 86 RKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLID 147 (525)
Q Consensus 86 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 147 (525)
-+..+-++.+...++.|++......+++|.+.+++..|..+|+-.+..- .+...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3455556666667778888888888888888888888888887776542 344556666553
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.72 E-value=11 Score=30.48 Aligned_cols=49 Identities=6% Similarity=0.089 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHh---CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q 048766 420 GEVWRAQRMIREL---GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLE 468 (525)
Q Consensus 420 g~~~~A~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 468 (525)
+...++..+|.-| ++... ...|......+-..|++.+|.++|+..++.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344555555554 22222 3445555555556666666666666666644
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=81.16 E-value=25 Score=30.12 Aligned_cols=47 Identities=4% Similarity=-0.185 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSG 83 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 83 (525)
+..+-...+..+.+.+..+..-.+.+.+..++...-...+.++...|
T Consensus 36 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 44343344444444444333333333333344333333344444443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=80.17 E-value=21 Score=28.65 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=55.3
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 048766 167 DKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRN 246 (525)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (525)
.++...-...+.++.+.+..+..-.+.+.+.+++..+-...+.++.+.++.+....+...+..++...-...+.++.+.+
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33444444444445555554444444444455666666666666666666544444444444555554445555555555
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccc
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSA 282 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 282 (525)
.. .+...+..+.. .++...-...+.++...|.
T Consensus 136 ~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 136 DE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp CG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred CH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 43 33344444433 2344444444555544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.71 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.3 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.26 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.17 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.95 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.94 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.76 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.75 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.73 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.62 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.62 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.5 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.49 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.4 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.38 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.37 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.35 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.34 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.14 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.92 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.66 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.53 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.51 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.49 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.0 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.97 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.16 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.84 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.58 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.3 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.25 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.62 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9.8e-24 Score=197.72 Aligned_cols=375 Identities=13% Similarity=0.095 Sum_probs=275.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCC
Q 048766 75 LISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGS 154 (525)
Q Consensus 75 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 154 (525)
+...+.+.|++++|.+.++++.+.. +-+...+..+..++...|++++|...++.+++.. +.+..++..+..+|...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3455667788888888888887653 2346677777777888888888888888887764 3456677778888888888
Q ss_pred HHHHHHHHhhccCCC---hhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 048766 155 VEDAIGVFGEMIDKD---IISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPN 231 (525)
Q Consensus 155 ~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 231 (525)
+++|...+......+ ...+..........+....+....... .......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 134 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA----------------------------LQYNPDL 134 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH----------------------------HHHCTTC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc----------------------------ccccccc
Confidence 888888777764422 222222222222222222222111111 0001123
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 048766 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDM 311 (525)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (525)
..............+....+...+....... +-+...+..+...+...|+.+.|...+....+.. +.+...+..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 212 (388)
T d1w3ba_ 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhh
Confidence 3334444555566667777777776666542 3355666777777788888888888888877765 4566778888888
Q ss_pred HHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcc
Q 048766 312 YSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 312 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 387 (525)
+...|++++|...++... ..+...+..+...+.+.|++++|+..|+++.+ ..|+ ..++..+...+...|+ ++
T Consensus 213 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~-~~ 288 (388)
T d1w3ba_ 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGS-VA 288 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSC-HH
T ss_pred hhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC-HH
Confidence 999999999998888775 44566788888999999999999999999988 5664 6778888888999998 99
Q ss_pred hHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 048766 388 KVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVI 465 (525)
Q Consensus 388 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 465 (525)
+|.+.++.... ..+.+...+..++..+.+.|++++|++.+++. ...|+ ..++..++..+...|++++|+..|++++
T Consensus 289 ~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 289 EAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998876 33556788889999999999999999999987 54555 6678889999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHhhccC
Q 048766 466 KLEGDSDYVYVMLCNLYTSHGN 487 (525)
Q Consensus 466 ~~~p~~~~~~~~l~~~~~~~g~ 487 (525)
+++|+++.++..++.+|.+.||
T Consensus 367 ~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.5e-22 Score=188.06 Aligned_cols=355 Identities=11% Similarity=0.051 Sum_probs=259.8
Q ss_pred HHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHH
Q 048766 112 AACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFG 191 (525)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 191 (525)
..+.+.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------------- 62 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----------------------- 62 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------
Confidence 33445566666666666665543 234455555555666666666666666555321
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 048766 192 FLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEY 268 (525)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 268 (525)
.+.+..++..+..++.+.|++++|...+....+ .+...+..........+....+........... .....
T Consensus 63 -----~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 136 (388)
T d1w3ba_ 63 -----NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYC 136 (388)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTH
T ss_pred -----CCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 112233445555555555666666555555442 222333444445555566666666665555443 33334
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHh
Q 048766 269 TFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYAR 345 (525)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 345 (525)
............+....+...+....... +.+...+..+...+...|+++.|...++... +.+...|..+...+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 215 (388)
T d1w3ba_ 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred ccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhc
Confidence 44455556667777777777777777665 5566778888999999999999999999875 4456788999999999
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHH
Q 048766 346 NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 346 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 424 (525)
.|++++|+..+++..... ..+...+..+...+...|+ +++|...|+++.+. .| ++..+..++..+...|++++
T Consensus 216 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 216 ARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGL-IDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp TTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHH
T ss_pred cccHHHHHHHHHHhHHHh--hhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998843 3456777788889999999 99999999998853 44 57788999999999999999
Q ss_pred HHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 425 AQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 425 A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
|++.++.. ..+.+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|+..|++..+..
T Consensus 290 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987 3345677888899999999999999999999999999999999999999999999999999999998764
Q ss_pred C
Q 048766 503 L 503 (525)
Q Consensus 503 ~ 503 (525)
+
T Consensus 370 P 370 (388)
T d1w3ba_ 370 P 370 (388)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=5.6e-16 Score=140.49 Aligned_cols=229 Identities=13% Similarity=0.041 Sum_probs=151.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Q 048766 236 NSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKC 315 (525)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (525)
-.....+.+.|++++|...|+++++.. +-+..+|..+..++...|++++|...+.++.+.. +.+...+..+..+|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345566777777777777777777652 2245556666666666666666666666665544 33444455555555555
Q ss_pred CCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhH----------------HHHHHHHH
Q 048766 316 GQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVT----------------FLNVLAAC 379 (525)
Q Consensus 316 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~----------------~~~l~~~~ 379 (525)
|++++|.+.++.. .. ..|+... ....+..+
T Consensus 101 ~~~~~A~~~~~~~-------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
T d1fcha_ 101 SLQRQACEILRDW-------------------------------LR---YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 146 (323)
T ss_dssp TCHHHHHHHHHHH-------------------------------HH---TSTTTGGGCC---------------CTTHHH
T ss_pred ccccccccchhhH-------------------------------HH---hccchHHHHHhhhhhhhhcccccchhhHHHH
Confidence 5555555555544 33 2221100 00111112
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 457 (525)
...+. +.++.+.+....+...-.+++..+..++..+...|++++|+..+++. ...| +...|..++..+...|++++|
T Consensus 147 ~~~~~-~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 147 LSDSL-FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHH-HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhH-HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhH
Confidence 22233 66777777777654233345677788888888899999999998886 2233 467788888888899999999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
++.++++++.+|+++.++..++.+|.+.|++++|+..|++..+.
T Consensus 226 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888774
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.2e-15 Score=134.59 Aligned_cols=272 Identities=11% Similarity=0.020 Sum_probs=198.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 048766 201 TISYNEVINGIAQFGDIEDAIMILSSMPS---PNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGI 277 (525)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 277 (525)
..........+.+.|++++|...|+++.+ .+..+|..+..++...|++++|...|++..+.. +-+...+..+..++
T Consensus 19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 97 (323)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccc
Confidence 33344567788999999999999999863 345689999999999999999999999988753 34677888888999
Q ss_pred ccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 278 AGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
...|++++|...+..+....... ........... ...+.......+..+...+.+.+|.+.+.
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHhccch-HHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 99999999999999988764221 11000000000 00011111112223344566788888888
Q ss_pred HHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCC
Q 048766 358 QLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFG 435 (525)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 435 (525)
+..+.....++...+..+...+...|+ +++|+..+++.... .| +...|..++..|.+.|++++|++.+++. ...
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGE-YDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccccccchhhHHHHHHHHH-Hhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 887733123346677788888889999 99999999998754 44 5778889999999999999999999986 333
Q ss_pred C-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH-----------HHHHHHHHhhccChhHHHHH
Q 048766 436 S-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV-----------YVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 436 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~ 494 (525)
| +..+|..++.+|.+.|++++|+..|++++++.|++... +..+..++...|+.+.+...
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4 46788999999999999999999999999999877653 45567777777777665443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=4.9e-10 Score=102.00 Aligned_cols=261 Identities=11% Similarity=-0.031 Sum_probs=160.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHhccccchHHHHHHHHHHHHhC----C-CchHHHHHHHH
Q 048766 239 LTGYVNRNRVPEALHLFGEMQSKDVPMD----EYTFSTMLSGIAGLSALTWGMLIHSCVIKQG----L-DASIVVASALL 309 (525)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~ 309 (525)
...+...|++++|++++++..+.....+ ...+..+..++...|++++|...+....+.. . ......+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4455667777777777777665421111 1244455566667777777777777665431 1 11123445566
Q ss_pred HHHHcCCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---CHhHHHHH
Q 048766 310 DMYSKCGQVEIADSMFRSLCR-------K----NLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP---DSVTFLNV 375 (525)
Q Consensus 310 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l 375 (525)
..+...|++..+...+..... + ....+..+...+...|+++.+...+........... ....+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 667777887777777665431 1 112445566777778888888888877765321111 12344444
Q ss_pred HHHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-----chhHHHHH
Q 048766 376 LAACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-----YGVVWRAL 444 (525)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l 444 (525)
...+...+. ...+...+........-... ...+..++..+...|++++|...+++. ...+ ....+..+
T Consensus 179 ~~~~~~~~~-~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 179 IQCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHhhhh-HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 555666666 77777766655443211111 233455666777888888888888875 1111 12345556
Q ss_pred HHHHhcCCChHHHHHHHHHHHhh------cCCChhHHHHHHHHHhhccChhHHHHHHHHHHH
Q 048766 445 LSASGACSDLDVARISAAEVIKL------EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 445 ~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (525)
...+...|++++|...+++++.. .|+...++..++.+|.+.|++++|.+.+++..+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788888888888888888753 244556778888888888888888888887655
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1e-10 Score=104.14 Aligned_cols=224 Identities=10% Similarity=0.093 Sum_probs=158.6
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-CHHHHHHHHHhcc---CCCHhHHHHHHHHH
Q 048766 268 YTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCG-QVEIADSMFRSLC---RKNLVTWNAMITGY 343 (525)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 343 (525)
..+..+...+.+.+..++|+..++.+++.+ |.+..+|+....++...| ++++|...++.+. +.+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 345555666777788888888888888876 666777777777777766 4788888888775 45667888888888
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCC
Q 048766 344 ARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGE 421 (525)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 421 (525)
...|++++|++.++++.+ ..| +...|..+...+...|+ +++|++.++.+.+. .| +...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~-~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccc
Confidence 888888888888888888 555 47778888888888888 88888888888753 45 45667766666655544
Q ss_pred ------hHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC--hhHHHHHHHHHhhc--cChh
Q 048766 422 ------VWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDS--DYVYVMLCNLYTSH--GNWD 489 (525)
Q Consensus 422 ------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~ 489 (525)
+++|++.+.++ ...| +...|..+...+.. ...+++.+.+++++++.|++ +..+..++..|... +..+
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 56777777765 3334 35556656555444 34577788888888877643 44455666666543 6667
Q ss_pred HHHHHHHHHHH
Q 048766 490 VASVMRNFMRE 500 (525)
Q Consensus 490 ~A~~~~~~~~~ 500 (525)
.+...+++..+
T Consensus 275 ~~~~~~~ka~~ 285 (315)
T d2h6fa1 275 NKEDILNKALE 285 (315)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3.3e-11 Score=104.57 Aligned_cols=114 Identities=10% Similarity=-0.093 Sum_probs=67.2
Q ss_pred ChhHHHHHHHHHhhCCCCCC---HHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 048766 247 RVPEALHLFGEMQSKDVPMD---EYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADS 323 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 323 (525)
+.+.++.-+++........+ ..++..+..++.+.|++++|...|+..++.. |.++.++..+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34556666666655421111 1244445556666666666666666666654 4455666666666666666666666
Q ss_pred HHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 324 MFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 324 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
.|+++. +.+..++..+...|...|++++|++.+++..+
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666664 22344566666666666666666666666665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=2.8e-11 Score=109.37 Aligned_cols=232 Identities=8% Similarity=-0.049 Sum_probs=172.2
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccc--cchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHH
Q 048766 243 VNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGL--SALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEI 320 (525)
Q Consensus 243 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (525)
...|++++|+.+++...... +-+...+..+..++... ++.+++...+..+.+.........+......+...+.++.
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 34556788999999887753 33555666555555544 4578999999999887633333334455677888999999
Q ss_pred HHHHHHhccC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 048766 321 ADSMFRSLCR---KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMT 397 (525)
Q Consensus 321 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 397 (525)
|...++.+.. .+...|+.+...+.+.|++++|...+++..+ ..|+... ....+...+. .+++...+....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~---~~~~~~~l~~-~~~a~~~~~~~l 235 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN---VLLKELE---LVQNAFFTDP-NDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH---HHHHHHH---HHHHHHHHCS-SCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH---hHHHHHH---HHHHHHHhcc-hhHHHHHHHHHH
Confidence 9999999873 4667899999999999999988777766655 3343322 2223334455 677888877776
Q ss_pred hhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 398 KDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
. .-+++...+..++..+...|+..+|...+.+. ...|+ ...+..++..+...|++++|++.++++++++|++...|
T Consensus 236 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 236 L--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp H--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred H--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 4 33445666777788888899999999999987 55554 56778889999999999999999999999999888888
Q ss_pred HHHHHHHhh
Q 048766 476 VMLCNLYTS 484 (525)
Q Consensus 476 ~~l~~~~~~ 484 (525)
..|...+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888877764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=4.4e-10 Score=99.96 Aligned_cols=224 Identities=11% Similarity=0.040 Sum_probs=159.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcccc-chHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 048766 234 SWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLS-ALTWGMLIHSCVIKQGLDASIVVASALLDMY 312 (525)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (525)
.++.+...+.+.+.+++|+++++++++.+ +-+...|.....++...| ++++|+..++.+.+.. +-+..++..+..++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 46667777888899999999999998863 335556777777777766 5899999999998887 66788888888999
Q ss_pred HcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCC----
Q 048766 313 SKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDI---- 384 (525)
Q Consensus 313 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~---- 384 (525)
.+.|++++|...++.+. +.+...|..+...+...|++++|++.++++.+ ..| +...|+.+...+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchh
Confidence 99999999999999887 45678899999999999999999999999998 566 45667666555544443
Q ss_pred -CcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh----CCCCchhHHHHHHHHHhc--CCChHH
Q 048766 385 -PFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSYGVVWRALLSASGA--CSDLDV 456 (525)
Q Consensus 385 -~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~--~~~~~~ 456 (525)
.+++|++.+..+.+. .| +...|..+...+...| .+++.+.++.. +...+...+..++..|.. .++.+.
T Consensus 200 ~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 045788888877753 45 5667777776665444 46666666654 322334444455544432 234444
Q ss_pred HHHHHHHHHh
Q 048766 457 ARISAAEVIK 466 (525)
Q Consensus 457 A~~~~~~~~~ 466 (525)
+...++++.+
T Consensus 276 ~~~~~~ka~~ 285 (315)
T d2h6fa1 276 KEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=6e-11 Score=102.92 Aligned_cols=214 Identities=12% Similarity=0.073 Sum_probs=124.7
Q ss_pred chHHHHHHHHHHHHhCC-Cc--hHHHHHHHHHHHHcCCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHH
Q 048766 282 ALTWGMLIHSCVIKQGL-DA--SIVVASALLDMYSKCGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIEL 355 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (525)
+.+.++..+.++..... .+ ...++..+..+|.+.|++++|...|++.. +.++.+|..+..+|...|++++|++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34445555555544321 11 23355566677777777777777777765 34566777777777777777777777
Q ss_pred HHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-
Q 048766 356 FEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL- 432 (525)
Q Consensus 356 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 432 (525)
|+++.+ ..|+ ..++..+...+...|+ +++|.+.++...+. .| +......+...+.+.+..+.+..+....
T Consensus 94 ~~~al~---~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 94 FDSVLE---LDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHH---HCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hhHHHH---HHhhhhhhHHHHHHHHHHHhh-HHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 777777 4553 4566666677777777 77777777777653 33 3333333444444555444444443333
Q ss_pred CCCCchhHHHHHHHHH----hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 433 GFGSYGVVWRALLSAS----GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 433 ~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
...+....+. ++..+ ...+..+.+...+.......|....++..++.+|...|++++|...|++..+..+
T Consensus 167 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 167 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 1111111111 11111 1223344455555555555666666777777777777777777777777766554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.4e-09 Score=97.23 Aligned_cols=259 Identities=10% Similarity=-0.023 Sum_probs=165.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHHHHHHHhccccchHHHHHHHHHHHHh----CCC---chH
Q 048766 235 WNSILTGYVNRNRVPEALHLFGEMQSKDV-PMD----EYTFSTMLSGIAGLSALTWGMLIHSCVIKQ----GLD---ASI 302 (525)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~ 302 (525)
+..+..+|...|++++|+..|++...... .++ ...+..+...+...|++..+...+...... ... ...
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 44555666666777777776666544210 111 123444455566667777777666665432 111 122
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhccC--------CCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCC----H
Q 048766 303 VVASALLDMYSKCGQVEIADSMFRSLCR--------KNLVTWNAMITGYARNGDLTKVIELFEQLKTVRD-LQPD----S 369 (525)
Q Consensus 303 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~----~ 369 (525)
..+..+...+...|+++.+...+..... .....+..+...+...++...+...+.+...... .... .
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 3455667778888888888888877641 1233555566777788888888888776544210 1111 2
Q ss_pred hHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC--ChhHHHHHHHHHhccCChHHHHHHHHHh-------CCCCc-hh
Q 048766 370 VTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP--TVEHCCSMIRLMGQKGEVWRAQRMIREL-------GFGSY-GV 439 (525)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~ 439 (525)
..+......+...|+ +++|...++...+...-.+ ....+..++..|...|++++|...++++ +..|+ ..
T Consensus 214 ~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGD-KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccc-HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 334455566777788 9999999988764311111 1334566788999999999999999875 33333 45
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCC---------ChhHHHHHHHHHhhccChhHHHHH
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGD---------SDYVYVMLCNLYTSHGNWDVASVM 494 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~ 494 (525)
.+..+...+...|++++|++.+++++++.+. ....+..++..+...++.+++.+.
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 6777888999999999999999999987531 223345566667777888877654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=2.7e-09 Score=94.65 Aligned_cols=185 Identities=11% Similarity=0.073 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHHHHHHHhccC--C-C-HhHHHHHHHHHHhcCChhHHHHHHH
Q 048766 282 ALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIADSMFRSLCR--K-N-LVTWNAMITGYARNGDLTKVIELFE 357 (525)
Q Consensus 282 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (525)
..+++..++++..+...+.+...+...+..+.+.|+++.|..+|+.+.. | + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466667777776655455566666667777777777777777777642 2 2 2356677777777777777777777
Q ss_pred HHhhCCCCCCCHhHHHHHHHH-HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh----
Q 048766 358 QLKTVRDLQPDSVTFLNVLAA-CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL---- 432 (525)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 432 (525)
++.+.+ +.+...|...... +...|+ .+.|..+|+.+.+. .+.++..|..+++.+.+.|++++|..+|++.
T Consensus 159 ~al~~~--~~~~~~~~~~a~~e~~~~~~-~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 159 KAREDA--RTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHTST--TCCTHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 777643 1123333332222 223345 67777777777653 2334566667777777777777777777764
Q ss_pred CCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 433 GFGSY--GVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 433 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
+..|+ ...|...+..-...|+.+.+..+++++.+..|+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 22332 2356666665566677777777777776666644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=1.8e-09 Score=95.80 Aligned_cols=182 Identities=8% Similarity=0.055 Sum_probs=145.0
Q ss_pred CHHHHHHHHHhcc----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC--HhHHHHHHHHHcCCCCCcchHH
Q 048766 317 QVEIADSMFRSLC----RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD--SVTFLNVLAACSHTDIPFDKVS 390 (525)
Q Consensus 317 ~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~~a~ 390 (525)
..+.|..+|+... +.+...|...+..+...|+++.|..+|+++.+ ..|. ...|...+..+.+.++ .+.|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~---~~~~~~~~~w~~~~~~~~~~~~-~~~ar 154 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEG-IKSGR 154 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHC-HHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HhcCChHHHHHHHHHHHHHcCC-hHHHH
Confidence 4577888888764 34566788888999999999999999999988 4453 4567888888888888 99999
Q ss_pred HHHHHhhhhhCCCCChhHHHHHHHH-HhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 048766 391 EYFESMTKDYGIKPTVEHCCSMIRL-MGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVARISAAEVIKL 467 (525)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 467 (525)
++|+++.+. .+.+...|...+.. +...|+.+.|..+|+.+ ..+.+...|..++..+...|+++.|..+|+++++.
T Consensus 155 ~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 155 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 999999853 23345555555544 34468999999999987 33345778899999999999999999999999998
Q ss_pred cCCChh----HHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 468 EGDSDY----VYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 468 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.|.++. .|..++..-...|+.+.+..+++++.+.-+.
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 775543 6888888888899999999999999876543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=1.4e-10 Score=104.62 Aligned_cols=253 Identities=6% Similarity=-0.100 Sum_probs=184.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH-HHH---HHHH-------hccccchHHHHHHHHHHHHhCCCchHHHHH
Q 048766 238 ILTGYVNRNRVPEALHLFGEMQSKDVPMDEYT-FST---MLSG-------IAGLSALTWGMLIHSCVIKQGLDASIVVAS 306 (525)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~---l~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 306 (525)
++......+..++|++++++.++. .|+..+ |+. ++.. +...|.++++..+++.+.+.. +.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333444568999999998875 455433 322 2222 234456788999999998876 55666677
Q ss_pred HHHHHHHcCC--CHHHHHHHHHhcc---CCCHhHHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHH
Q 048766 307 ALLDMYSKCG--QVEIADSMFRSLC---RKNLVTWN-AMITGYARNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAAC 379 (525)
Q Consensus 307 ~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 379 (525)
.+..++...+ +++.|...++.+. +++...+. .....+...+.++.|+..++++.+ ..| +...+..+...+
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~---~~p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 6766666655 5889999998885 34555554 445677788999999999999988 566 577788888888
Q ss_pred cCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHhcCCChHHH
Q 048766 380 SHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASGACSDLDVA 457 (525)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 457 (525)
...|+ +++|...++...+. .|.. ......+...+..+++...+... ..++....+..++..+...|++++|
T Consensus 189 ~~~~~-~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 189 PQLHP-QPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHSC-CCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHhcC-HHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 88888 88887766655532 2221 22334455667777788777765 3334455556667777788999999
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 458 RISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 458 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
...+.++++.+|++..++..++.++...|++++|..+++++.+..+
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999988654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.95 E-value=2.6e-09 Score=78.36 Aligned_cols=91 Identities=14% Similarity=-0.037 Sum_probs=82.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhcc
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHG 486 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 486 (525)
+..++..+.+.|++++|+..+++. ...| ++..|..++.++.+.|++++|+..++++++++|+++.++..++.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 345677889999999999999997 3344 47889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHH
Q 048766 487 NWDVASVMRNFMR 499 (525)
Q Consensus 487 ~~~~A~~~~~~~~ 499 (525)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=4.4e-09 Score=77.80 Aligned_cols=92 Identities=12% Similarity=-0.022 Sum_probs=68.4
Q ss_pred HHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChh
Q 048766 412 MIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD 489 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 489 (525)
-+..+.+.|++++|+..|++. .. +.++..|..++.++...|++++|+..++++++++|+++.+|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456677778888888887776 22 3345667777777777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCC
Q 048766 490 VASVMRNFMRERGL 503 (525)
Q Consensus 490 ~A~~~~~~~~~~~~ 503 (525)
+|+..+++..+..+
T Consensus 89 ~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 89 EAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCC
Confidence 88888877776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=3.3e-09 Score=87.59 Aligned_cols=97 Identities=10% Similarity=-0.055 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 048766 404 PTVEHCCSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNL 481 (525)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 481 (525)
|+...+...+..|.+.|++++|+..|+++ .. +.++..|..++.+|.+.|++++|+..|+++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444555555666666666666666554 22 22344555556666666666666666666666666666666666666
Q ss_pred HhhccChhHHHHHHHHHHH
Q 048766 482 YTSHGNWDVASVMRNFMRE 500 (525)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~ 500 (525)
|...|++++|+..|+++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666665554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.7e-08 Score=74.61 Aligned_cols=106 Identities=12% Similarity=0.001 Sum_probs=87.5
Q ss_pred HHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCC
Q 048766 375 VLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACS 452 (525)
Q Consensus 375 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~ 452 (525)
-...+...|+ +++|+.+|+++.+. -+.++..|..++.+|.+.|++++|+..+++. . .+.++..|..++.++...|
T Consensus 9 ~g~~~~~~g~-~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGN-IDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 3455677788 89999999888753 2335777888899999999999999999886 2 2445778899999999999
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
++++|+..++++++.+|+++.++..+..+..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999988877654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.6e-08 Score=78.41 Aligned_cols=121 Identities=7% Similarity=-0.039 Sum_probs=98.8
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSA 447 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 447 (525)
.+......+.+.|+ +++|+..|+++.+. .| +...|..++.+|...|++++|+..|+++ ...| +..+|..++.+
T Consensus 12 ~l~~~gn~~~~~~~-y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 12 ELKTQANDYFKAKD-YENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence 34455667888999 99999999999864 44 6788899999999999999999999987 3334 46788999999
Q ss_pred HhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHH--hhccChhHHHHHH
Q 048766 448 SGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLY--TSHGNWDVASVMR 495 (525)
Q Consensus 448 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~ 495 (525)
+...|++++|+..++++++++|+++.++..+..+. ...+.+++|....
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999888877664 3455577776553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=6.6e-08 Score=78.46 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHH
Q 048766 335 TWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMI 413 (525)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 413 (525)
.|+. ...+...|+++.|++.|.++ .+|+..++..+...+...|+ +++|++.|++..+. .| .+..|..++
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~-~~~A~~~~~kAl~l---dp~~~~a~~~~g 77 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKN-MTEAEKAFTRSINR---DKHLAVAYFQRG 77 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCC-chhHHHHHHHHHHH---hhhhhhhHHHHH
Confidence 3443 56667888999998888753 46777888888888888888 99999999888853 45 467788888
Q ss_pred HHHhccCChHHHHHHHHHh----CCCCc--------------hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 414 RLMGQKGEVWRAQRMIREL----GFGSY--------------GVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~----~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
.+|.+.|++++|++.|++. +..+. ..++..+..++...|++++|.+.+++++++.|+.
T Consensus 78 ~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 78 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 8888999999998888875 11110 2445567778888888999988888888888853
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.76 E-value=3.2e-06 Score=72.49 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHhccC-CCHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHH--cCCCCCcch
Q 048766 316 GQVEIADSMFRSLCR-KNLVTWNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAAC--SHTDIPFDK 388 (525)
Q Consensus 316 g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~ 388 (525)
.+...|...+..... .+......+...+.. ..+.+.|...++...+.| .+............ ..... ...
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~-~~~ 128 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD-FKK 128 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC-HHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccch-hHH
Confidence 345555555555442 233334444433332 456777888888877755 22221111112222 12223 555
Q ss_pred HHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHH
Q 048766 389 VSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARIS 460 (525)
Q Consensus 389 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 460 (525)
+...+..... ..+...+..|+..|.. ..+...+...++......++.....+...+.. .+++++|+..
T Consensus 129 a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~ 204 (265)
T d1ouva_ 129 AVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR 204 (265)
T ss_dssp HHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhh
Confidence 5566655443 3455666777777764 45667777777776333456666666655554 5689999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhh----ccChhHHHHHHHHHHHcCCc
Q 048766 461 AAEVIKLEGDSDYVYVMLCNLYTS----HGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 461 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 504 (525)
|+++.+.+ ++.++..|+.+|.+ ..+.++|.++|++..+.|..
T Consensus 205 ~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 205 YSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred Hhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 99998876 58889999999986 44899999999999888764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.3e-07 Score=76.68 Aligned_cols=146 Identities=12% Similarity=0.013 Sum_probs=111.1
Q ss_pred HHHHHcCCCHHHHHHHHHhccCCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCC-HhHHHHHHHHHcCCCCCcc
Q 048766 309 LDMYSKCGQVEIADSMFRSLCRKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPD-SVTFLNVLAACSHTDIPFD 387 (525)
Q Consensus 309 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 387 (525)
...+...|+++.|.+.|..+.+++..+|..+..+|...|++++|++.|++..+ +.|+ ...|..+..++.+.|+ ++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g~-~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTEK-YD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhcc-HH
Confidence 44567889999999999999888888999999999999999999999999998 5664 6788888888999999 99
Q ss_pred hHHHHHHHhhhhhC-----------CCC---ChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCchhHHHHHHHHHhcCC
Q 048766 388 KVSEYFESMTKDYG-----------IKP---TVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSYGVVWRALLSASGACS 452 (525)
Q Consensus 388 ~a~~~~~~~~~~~~-----------~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 452 (525)
+|.+.|++...... ... ...++..++.+|.+.|++++|.+.++.. ...|+. ..+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-----------~~~ 156 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHS 156 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------GGG
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------chH
Confidence 99999988764211 111 1245667888999999999999999986 444542 233
Q ss_pred ChHHHHHHHHHHHhhcC
Q 048766 453 DLDVARISAAEVIKLEG 469 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p 469 (525)
..+.|+..+.+.....|
T Consensus 157 ~~~~Al~~~~~~~~~~~ 173 (192)
T d1hh8a_ 157 KIDKAMECVWKQKLYEP 173 (192)
T ss_dssp HHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhhhhCCc
Confidence 44566655555444444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=8.2e-08 Score=75.39 Aligned_cols=90 Identities=11% Similarity=-0.060 Sum_probs=50.7
Q ss_pred HHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhH
Q 048766 413 IRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDV 490 (525)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 490 (525)
+..|.+.|++++|+..|+++ ... .+...|..++..+...|++++|+..|+++++++|++..+|..++.++...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 44555566666666666554 212 2344555555555556666666666666666666555566666666666666666
Q ss_pred HHHHHHHHHHcC
Q 048766 491 ASVMRNFMRERG 502 (525)
Q Consensus 491 A~~~~~~~~~~~ 502 (525)
|...+++..+..
T Consensus 97 A~~~~~~a~~~~ 108 (159)
T d1a17a_ 97 ALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC
Confidence 666655555543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=2e-08 Score=82.78 Aligned_cols=99 Identities=6% Similarity=-0.132 Sum_probs=44.2
Q ss_pred HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHH
Q 048766 369 SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLS 446 (525)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~ 446 (525)
...+......+.+.|+ +++|+..|+++.+. -+.++..|..++.+|.+.|++++|+..|+++ ...|+ ..+|..++.
T Consensus 4 a~~l~~~Gn~~~~~g~-~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 4 AQELKEQGNRLFVGRK-YPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 3333333444444444 44444444444422 1123344444444444444444444444443 22332 334444555
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCC
Q 048766 447 ASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
++...|++++|+..|+++++++|+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc
Confidence 555555555555555555554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=4.4e-08 Score=72.40 Aligned_cols=107 Identities=11% Similarity=0.004 Sum_probs=76.6
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccC---ChHHHHHHHHHh-CCCCch---hHHHHHHH
Q 048766 374 NVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKG---EVWRAQRMIREL-GFGSYG---VVWRALLS 446 (525)
Q Consensus 374 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~~~---~~~~~l~~ 446 (525)
.++..+...++ +++|.+.|++.... -+.++.++..++.++.+.+ ++++|+.+++++ ...|++ .++..++.
T Consensus 4 ~l~n~~~~~~~-l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVED-LLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34555556666 78888888877753 1335677777777777644 444688888876 333433 36778899
Q ss_pred HHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 048766 447 ASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYT 483 (525)
Q Consensus 447 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 483 (525)
+|.+.|++++|++.|+++++++|++..+......+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999988887766655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=1.5e-07 Score=82.22 Aligned_cols=192 Identities=10% Similarity=0.013 Sum_probs=129.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CC--CHhHHH
Q 048766 307 ALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMITGYARNGDLTKVIELFEQLKTVRDL--QP--DSVTFL 373 (525)
Q Consensus 307 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~ 373 (525)
....+|...|++++|.+.|.+... .+ ..+|..+..+|.+.|++++|++.+++..+.... .+ ...++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345678888899999888887742 22 247888899999999999999999876652100 11 134555
Q ss_pred HHHHHHc-CCCCCcchHHHHHHHhhhhhCCCCC----hhHHHHHHHHHhccCChHHHHHHHHHh----CCCCc-----hh
Q 048766 374 NVLAACS-HTDIPFDKVSEYFESMTKDYGIKPT----VEHCCSMIRLMGQKGEVWRAQRMIREL----GFGSY-----GV 439 (525)
Q Consensus 374 ~l~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~ 439 (525)
.+...+. ..|+ +++|++.+++..+......+ ..++..++..|...|++++|+..++++ ...+. ..
T Consensus 122 ~l~~~~~~~~~~-~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 122 ELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHhHhhHHHH-HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 6666664 4688 99999999887643211221 345778899999999999999999986 11111 12
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh-----HHHHHHHHHhh--ccChhHHHHHHHHHH
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDY-----VYVMLCNLYTS--HGNWDVASVMRNFMR 499 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~ 499 (525)
.+...+..+...|+++.|...++++.+.+|..+. ....++.++.. .+.+++|+..|+++.
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2344555667889999999999999999875333 34456666655 356788888876443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=4.6e-07 Score=79.11 Aligned_cols=194 Identities=9% Similarity=-0.040 Sum_probs=115.7
Q ss_pred HHhccccchHHHHHHHHHHHHh----CCCc-hHHHHHHHHHHHHcCCCHHHHHHHHHhccC-----CC----HhHHHHHH
Q 048766 275 SGIAGLSALTWGMLIHSCVIKQ----GLDA-SIVVASALLDMYSKCGQVEIADSMFRSLCR-----KN----LVTWNAMI 340 (525)
Q Consensus 275 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~ 340 (525)
..|...+++++|...|.++.+. +.++ -..++..+..+|.+.|++++|.+.++.... .+ ..++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 3455555666666655555432 1111 234566667777777777777777776541 11 23455566
Q ss_pred HHHHh-cCChhHHHHHHHHHhhCC---CCCCC-HhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-----hhHHH
Q 048766 341 TGYAR-NGDLTKVIELFEQLKTVR---DLQPD-SVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-----VEHCC 410 (525)
Q Consensus 341 ~~~~~-~~~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 410 (525)
..|.. .|++++|++.+++..+.- +..+. ..++..+...+...|+ +++|.+.|+++.....-.+. ...+.
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~-y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh-HHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 66644 588888888888765421 01111 3456677788888888 88888888887654211111 12234
Q ss_pred HHHHHHhccCChHHHHHHHHHh-CCCCc------hhHHHHHHHHHhc--CCChHHHHHHHHHHHhhcC
Q 048766 411 SMIRLMGQKGEVWRAQRMIREL-GFGSY------GVVWRALLSASGA--CSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~------~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~p 469 (525)
..+..+...|+++.|...+++. ...|. ......++.++.. .+.+++|+..|+++.+++|
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 4555667788999999988887 33332 2234555566544 3457888888877766665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.7e-07 Score=73.12 Aligned_cols=120 Identities=8% Similarity=-0.051 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-------------hhHHHHHHHHHhccCChHHHHHHHHHh-CCCC
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-------------VEHCCSMIRLMGQKGEVWRAQRMIREL-GFGS 436 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 436 (525)
.+......+...|+ +++|+..|++..+.....+. ..+|..++.+|.+.|++++|+..+++. ...|
T Consensus 15 ~l~~~G~~~~~~~~-~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34445557788888 99999999888754222221 234566788888899999999998876 3334
Q ss_pred -chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHH
Q 048766 437 -YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491 (525)
Q Consensus 437 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 491 (525)
+...+..++.++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888889999999999999999999998988888888887766655544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=4.3e-07 Score=71.90 Aligned_cols=96 Identities=8% Similarity=-0.042 Sum_probs=70.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHh----CCCCc-------------hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 408 HCCSMIRLMGQKGEVWRAQRMIREL----GFGSY-------------GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
.+...+..+.+.|++++|+..|++. +..+. ..++..+..+|.+.|++++|+..++++++++|+
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 3455567777888888888888765 11111 133445667777888888888888888888888
Q ss_pred ChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 471 SDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++.++..++.+|...|++++|+..|++..+..+
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888877654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1e-07 Score=70.32 Aligned_cols=95 Identities=4% Similarity=-0.087 Sum_probs=79.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHh-CC-CCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHhhcCCC--hhHHHHHHHHH
Q 048766 410 CSMIRLMGQKGEVWRAQRMIREL-GF-GSYGVVWRALLSASGACS---DLDVARISAAEVIKLEGDS--DYVYVMLCNLY 482 (525)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 482 (525)
..++..+...+++++|.+.|++. .. +.++.++..++.++.+.+ ++++|+.+++++++.+|.+ ..++..||.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999987 33 445788888999988755 4567999999999988744 34789999999
Q ss_pred hhccChhHHHHHHHHHHHcCCc
Q 048766 483 TSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.+.|++++|+++|+++.+..+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhHHHHHHHHHHHHhCcC
Confidence 9999999999999999987653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.7e-07 Score=69.09 Aligned_cols=93 Identities=11% Similarity=-0.014 Sum_probs=69.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh-------HHHHHH
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY-------VYVMLC 479 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 479 (525)
+..++..|.+.|++++|+..|++. ... .+...+..++.+|.+.|++++|++.++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677788888888888888876 223 34667777888888888888888888888888876654 455566
Q ss_pred HHHhhccChhHHHHHHHHHHHc
Q 048766 480 NLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
..+...+++++|+..|++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 6677777888888888777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.50 E-value=1.2e-06 Score=69.19 Aligned_cols=131 Identities=7% Similarity=-0.031 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCC-ChhHHHHHHHH
Q 048766 337 NAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKP-TVEHCCSMIRL 415 (525)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 415 (525)
......+...|+++.|++.|.++.+ ..+.. ... .. .... . .+.| ....+..++.+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~---~~~~~-------~~~---~~-~~~~------~----~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLR---YVEGS-------RAA---AE-DADG------A----KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HHHHH-------HHH---SC-HHHH------G----GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---hhhhh-------hhh---hh-hHHH------H----HhChhhHHHHHHHHHH
Confidence 3445667778888888888887765 11110 000 00 0000 0 1112 45567788899
Q ss_pred HhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHH
Q 048766 416 MGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVA 491 (525)
Q Consensus 416 ~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 491 (525)
|.+.|++++|+..++++ ...|+ +..|..++.++...|++++|+..|+++++++|+++.+...+..+........++
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 44454 678899999999999999999999999999999999999888887666555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.50 E-value=1e-06 Score=68.26 Aligned_cols=64 Identities=14% Similarity=-0.038 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 440 VWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 440 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++..++.+|.+.|++++|++.++++++++|.+..+|..++.++...|++++|+..|++..+..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455666777778888888888888888887777888888888888888888888877776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.49 E-value=1.7e-06 Score=68.20 Aligned_cols=143 Identities=10% Similarity=-0.005 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHH
Q 048766 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413 (525)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 413 (525)
..+...+..+.+.|++.+|+..|++... ..|. .... ...-......+ ....|..+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~---~~~~------------~~~~-~~~~~~~~~~~--------~~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVS---WLEM------------EYGL-SEKESKASESF--------LLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTT------------CCSC-CHHHHHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHH------------hhcc-chhhhhhcchh--------HHHHHHhHH
Confidence 3556667778888888888888887665 2111 0010 11111111111 134567788
Q ss_pred HHHhccCChHHHHHHHHHh-C-CCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChh-H
Q 048766 414 RLMGQKGEVWRAQRMIREL-G-FGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWD-V 490 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~ 490 (525)
.+|.+.|++++|+..+++. . .+.+..++..++.++...|++++|+..|+++++++|+++.+...+..+....+... .
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~ 151 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 8999999999999999987 3 24457788899999999999999999999999999999999999998887776554 3
Q ss_pred HHHHHHHHHH
Q 048766 491 ASVMRNFMRE 500 (525)
Q Consensus 491 A~~~~~~~~~ 500 (525)
..+.+.+|.+
T Consensus 152 ~kk~~~~~f~ 161 (168)
T d1kt1a1 152 DRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5556666554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=9.3e-07 Score=69.95 Aligned_cols=92 Identities=10% Similarity=-0.071 Sum_probs=74.0
Q ss_pred HHHHHhccCChHHHHHHHHHh-----------------CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChh
Q 048766 412 MIRLMGQKGEVWRAQRMIREL-----------------GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDY 473 (525)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~-----------------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 473 (525)
.+..+.+.|++++|+..++++ ...| ....+..++.++.+.|++++|+..+.++++++|+++.
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~ 112 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh
Confidence 344555666666666666543 1122 2445677888899999999999999999999999999
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 474 VYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+|..++.+|...|++++|+..|++..+..+
T Consensus 113 a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.40 E-value=1.7e-06 Score=68.66 Aligned_cols=72 Identities=11% Similarity=0.002 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHH-----cCCccCCcc
Q 048766 438 GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRE-----RGLRKEAGC 509 (525)
Q Consensus 438 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 509 (525)
...+..++..+...|++++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ .|+.|.+..
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 346677888999999999999999999999999999999999999999999999999999854 688776653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.38 E-value=2e-06 Score=66.59 Aligned_cols=129 Identities=6% Similarity=-0.069 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHH
Q 048766 334 VTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMI 413 (525)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 413 (525)
..+...+..+.+.|++.+|+..|.++.. ..|... .. .+........ .....+|..++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~---~~~~~~-----------~~--~~~~~~~~~~-------~~~~~~~~Nla 74 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALD---FFIHTE-----------EW--DDQILLDKKK-------NIEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTTTCT-----------TC--CCHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcchh-----------hh--hhHHHHHhhh-------hHHHHHHhhHH
Confidence 3566677788899999999999998887 333211 11 1111111111 11235678899
Q ss_pred HHHhccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhc
Q 048766 414 RLMGQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSH 485 (525)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 485 (525)
.+|.+.|++++|++.++++ ...| +..+|..++.++...|++++|+..|+++++++|+|+.+...+..+..+.
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999986 3334 5789999999999999999999999999999999999988877765543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=3.8e-08 Score=93.17 Aligned_cols=109 Identities=7% Similarity=-0.078 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHH
Q 048766 371 TFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSAS 448 (525)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~ 448 (525)
.+..+...+.+.++ .+.|...++..... .| ...+..++..+...|++++|+..+++. ...|+ ...|+.++..+
T Consensus 122 ~~~~lg~~~~~~~~-~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 122 KSSQLGIISNKQTH-TSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCC-HHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 33444444444444 55555444433321 11 133444555555555555555555554 22222 34455555555
Q ss_pred hcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 449 GACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 449 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
...|+..+|+..|.+++..+|+.+.++..|+.++.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 555555555555555555555455555555554433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.37 E-value=3.1e-06 Score=66.64 Aligned_cols=95 Identities=7% Similarity=-0.097 Sum_probs=75.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh----CCCC-------------chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC
Q 048766 409 CCSMIRLMGQKGEVWRAQRMIREL----GFGS-------------YGVVWRALLSASGACSDLDVARISAAEVIKLEGDS 471 (525)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 471 (525)
+...+..+.+.|++.+|+..|++. +..+ ....+..+..+|.+.|++++|+..++++++++|++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 444566667777777777777654 1111 12345557778899999999999999999999999
Q ss_pred hhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 472 DYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..++..++.++...|++++|+..|+++.+..+
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999987654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.35 E-value=0.00022 Score=62.01 Aligned_cols=206 Identities=11% Similarity=0.106 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHccCCHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcc
Q 048766 37 NVFVSTALMGFYRKINSLADAHKMFVEIPQPSVVSWNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQ 116 (525)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (525)
|..--..+.+.|-+.|.++.|..+|..+. .|..++..+.+.+++..|.+++.+.. +..+|..+...|.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence 33333444555555566666666665444 45555555555566666555554331 34455555555554
Q ss_pred cCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC---CChhhHHHHHHHHHhCCChHHHHHHH
Q 048766 117 LGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID---KDIISWNSVIAASARNGNLELAFGFL 193 (525)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 193 (525)
......+. +.......++.....++..|-..|.+++...+++.... .+...++.++..|++.+ .++-.+.+
T Consensus 82 ~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 82 GKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp TTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 44433321 11112223333344555555556666666655554422 23344555555555443 33333333
Q ss_pred hcC-CCC----------CcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 194 HRL-PNP----------DTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQS 260 (525)
Q Consensus 194 ~~~-~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 260 (525)
+.. ..- ....|..++..|.+.|.++.|..+.-.-. ++..-....+..+.+.++++...+++....+
T Consensus 156 ~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 156 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 332 100 12223445555555566665555443321 2333345556666777777666666655554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.2e-06 Score=59.87 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHhccCChHHHHHHHHHh----CC----CC-chhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHH
Q 048766 405 TVEHCCSMIRLMGQKGEVWRAQRMIREL----GF----GS-YGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVY 475 (525)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 475 (525)
+...+..++..+.+.|++++|+..|++. +. .+ ...++..++.++.+.|++++|+..++++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 4445667888999999999999999875 11 11 246788899999999999999999999999999999998
Q ss_pred HHHHHHH
Q 048766 476 VMLCNLY 482 (525)
Q Consensus 476 ~~l~~~~ 482 (525)
..+....
T Consensus 84 ~Nl~~~~ 90 (95)
T d1tjca_ 84 GNLKYFE 90 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.34 E-value=0.00025 Score=60.17 Aligned_cols=223 Identities=9% Similarity=-0.028 Sum_probs=137.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHhCCCchHHHHHH
Q 048766 232 SSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG----LSALTWGMLIHSCVIKQGLDASIVVASA 307 (525)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 307 (525)
+..+..|...+.+.+++++|+++|++..+.| +...+..|...+.. ..+...+...+....+.+.+ .....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhc
Confidence 3345556666677777888888887777665 34444445544443 45677777777777666522 22223
Q ss_pred HHHHHHc----CCCHHHHHHHHHhccCC-CHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHH
Q 048766 308 LLDMYSK----CGQVEIADSMFRSLCRK-NLVTWNAMITGYAR----NGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAA 378 (525)
Q Consensus 308 l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (525)
+...+.. ..+.+.|...++...+. .......+...+.. ......+...+...... .+...+..+...
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~ 151 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc----cccchhhhhhhh
Confidence 3333332 45667777777766532 33343444444432 44566777777776653 344555555555
Q ss_pred HcC----CCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc----cCChHHHHHHHHHhCCCCchhHHHHHHHHHhc
Q 048766 379 CSH----TDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ----KGEVWRAQRMIRELGFGSYGVVWRALLSASGA 450 (525)
Q Consensus 379 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (525)
+.. ..+ ...+...++...+. .++.....+...|.. ..++++|...|++.....++..+..|+..|..
T Consensus 152 ~~~~~~~~~~-~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 152 YDAGRGTPKD-LKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHTSSSCCC-HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hccCCCcccc-cccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHc
Confidence 543 233 56666777666542 356666667766665 56899999999987323456666777777654
Q ss_pred ----CCChHHHHHHHHHHHhhcC
Q 048766 451 ----CSDLDVARISAAEVIKLEG 469 (525)
Q Consensus 451 ----~~~~~~A~~~~~~~~~~~p 469 (525)
.+++++|.+.|+++.+.++
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCCccCHHHHHHHHHHHHHCcC
Confidence 4489999999999998885
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=0.00097 Score=57.80 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=53.0
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHhhccCCChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 048766 141 IANCLIDMYGKCGSVEDAIGVFGEMIDKDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDA 220 (525)
Q Consensus 141 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 220 (525)
-.....+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+...+.+......+
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la 88 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA 88 (336)
T ss_dssp -------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH
Confidence 334455555566666666666654432 4445555555555555555555432 333455555555544444333
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhcc
Q 048766 221 IMILSSMPSPNSSSWNSILTGYVNRNRVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAG 279 (525)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 279 (525)
.-+ ......+......++..|-..|.+++...+++..... -+.+...++.++..+++
T Consensus 89 ~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 89 QMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred HHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 211 1111122222334455555555555555555544322 13334444444444444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.14 E-value=6.8e-06 Score=63.73 Aligned_cols=94 Identities=14% Similarity=-0.091 Sum_probs=73.4
Q ss_pred HHHHH--HHHHhccCChHHHHHHHHHh----CCCCc----------hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC-
Q 048766 408 HCCSM--IRLMGQKGEVWRAQRMIREL----GFGSY----------GVVWRALLSASGACSDLDVARISAAEVIKLEGD- 470 (525)
Q Consensus 408 ~~~~l--~~~~~~~g~~~~A~~~~~~~----~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~- 470 (525)
.|..+ +..+.+.|++++|++.|++. +..|+ ...|..+..+|...|++++|+..+++++++.|.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 55666788999999888875 22222 356778899999999999999999999986532
Q ss_pred ----------ChhHHHHHHHHHhhccChhHHHHHHHHHHHc
Q 048766 471 ----------SDYVYVMLCNLYTSHGNWDVASVMRNFMRER 501 (525)
Q Consensus 471 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (525)
...++..++.+|...|++++|+..|++..+.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1335788999999999999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.07 E-value=2.9e-06 Score=64.74 Aligned_cols=87 Identities=10% Similarity=-0.058 Sum_probs=60.8
Q ss_pred hccCChHHHHHHHHHh-CCCC-chhHHHHHHHHHhc----------CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh
Q 048766 417 GQKGEVWRAQRMIREL-GFGS-YGVVWRALLSASGA----------CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS 484 (525)
Q Consensus 417 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 484 (525)
-+.+.+++|+..++.. ...| ++.++..++.++.. .+.+++|+..|+++++++|+++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445566666666655 2222 34445555544432 3456889999999999999999999999999987
Q ss_pred ccC-----------hhHHHHHHHHHHHcCC
Q 048766 485 HGN-----------WDVASVMRNFMRERGL 503 (525)
Q Consensus 485 ~g~-----------~~~A~~~~~~~~~~~~ 503 (525)
.|+ +++|.+.|++..+..+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 764 6788888888877654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=8.6e-06 Score=60.58 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
..+..++..+...|++++|+.+|+++++++|+++.++..++.+|.+.|++++|+..++++.+..+
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~ 69 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc
Confidence 34567888999999999999999999999999999999999999999999999999999887544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.05 E-value=1.6e-05 Score=57.41 Aligned_cols=91 Identities=8% Similarity=-0.030 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhc
Q 048766 73 NSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKC 152 (525)
Q Consensus 73 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (525)
-.+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|...++..++.. +.+..++..+...|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 345566778888888888888888753 2257778888888888888888888888888764 45677888888888888
Q ss_pred CCHHHHHHHHhhc
Q 048766 153 GSVEDAIGVFGEM 165 (525)
Q Consensus 153 g~~~~a~~~~~~~ 165 (525)
|++++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888888888764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=3.2e-06 Score=79.69 Aligned_cols=127 Identities=7% Similarity=-0.041 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHH
Q 048766 315 CGQVEIADSMFRSLC---RKNLVTWNAMITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSE 391 (525)
Q Consensus 315 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~ 391 (525)
.+.++.|...+.... .++...+..+...+.+.|+.+.|...+++... ..| ..++..+...+...++ +++|..
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~~-~~~~~~LG~l~~~~~~-~~~A~~ 173 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---YIC-QHCLVHLGDIARYRNQ-TSQAES 173 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHH---HHH-HHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC---CCH-HHHHHHHHHHHHHccc-HHHHHH
Confidence 445555555555443 23444566667777777777777777766554 222 2455666677777777 888888
Q ss_pred HHHHhhhhhCCCC-ChhHHHHHHHHHhccCChHHHHHHHHHh--CCCCchhHHHHHHHHHh
Q 048766 392 YFESMTKDYGIKP-TVEHCCSMIRLMGQKGEVWRAQRMIREL--GFGSYGVVWRALLSASG 449 (525)
Q Consensus 392 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 449 (525)
.|+++.+. .| +...|+.|+..|...|+..+|+..|.+. -.+|.+.++..|...+.
T Consensus 174 ~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 174 YYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 88877743 45 4567778888888888888888877775 33445666666665554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.92 E-value=5.3e-06 Score=63.27 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 453 DLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 453 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
++++|.+.|+++++++|++...+..|.... .|.+++.++.+.|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 478999999999999999988887777765 55666666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=2.4e-05 Score=54.40 Aligned_cols=66 Identities=12% Similarity=-0.003 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCC-------hhHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 439 VVWRALLSASGACSDLDVARISAAEVIKLEGDS-------DYVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 439 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
..+..++..+.+.|++++|+..|+++++..|.+ ..++..|+.++.+.|++++|+..++++.+..+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 345578889999999999999999999986543 467899999999999999999999999987654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.66 E-value=3.2e-05 Score=65.27 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=57.3
Q ss_pred hcCChhHHHHHHHHHhhCCCCCC-CHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCC-hhHHHHHHHHHhccCCh
Q 048766 345 RNGDLTKVIELFEQLKTVRDLQP-DSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPT-VEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 422 (525)
+.|++++|+..+++..+ ..| |...+..+...++..|+ +++|.+.++...+. .|+ ...+..+...+...+..
T Consensus 8 ~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~-~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGD-FERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp TTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhcccc
Confidence 44566666666666555 334 34555555555666665 66666666655532 343 22333333333333333
Q ss_pred HHHHHHHHHh--CCCCc-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhH
Q 048766 423 WRAQRMIREL--GFGSY-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYV 474 (525)
Q Consensus 423 ~~A~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 474 (525)
+++..-.... ...|+ ...+...+..+...|+.++|.+.++++.+..|..+..
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 3222221111 11121 2222333344455566666666666666666554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.61 E-value=0.00049 Score=52.76 Aligned_cols=64 Identities=6% Similarity=-0.135 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHh--------CCCCc-----hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q 048766 407 EHCCSMIRLMGQKGEVWRAQRMIREL--------GFGSY-----GVVWRALLSASGACSDLDVARISAAEVIKLEGD 470 (525)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 470 (525)
..|+.++.+|...|++++|.+.+++. ...++ ...+..++.+|...|++++|+..|++++++.|.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34566677777777777777766654 11121 224667788999999999999999999998753
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.53 E-value=4.2e-05 Score=64.55 Aligned_cols=122 Identities=15% Similarity=0.018 Sum_probs=86.8
Q ss_pred HcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHHHHHHHHHh-CCCCc-hhHHHHHHHHHhcCCChHH
Q 048766 379 CSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWRAQRMIREL-GFGSY-GVVWRALLSASGACSDLDV 456 (525)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ 456 (525)
....|+ +++|++.+++..+. -+.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..++
T Consensus 6 aL~~G~-l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQ-LQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTC-HHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 456788 99999999999863 2446889999999999999999999999987 54565 4445555555443333333
Q ss_pred HHHHHHHHHhh-cCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcCC
Q 048766 457 ARISAAEVIKL-EGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERGL 503 (525)
Q Consensus 457 A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 503 (525)
+.......... +|++...+...+..+...|+.++|.++++++.+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 33222221122 244445566778889999999999999999988654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=0.0019 Score=50.48 Aligned_cols=111 Identities=13% Similarity=-0.007 Sum_probs=76.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhc
Q 048766 339 MITGYARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQ 418 (525)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 418 (525)
........|++++|.+.|.+... +.++... ..... ..-+...-..+... ....+..++..+.+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~---l~rG~~l--------~~~~~-~~w~~~~r~~l~~~-----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALR---EWRGPVL--------DDLRD-FQFVEPFATALVED-----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT---TCCSSTT--------GGGTT-STTHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---hCccccc--------ccCcc-hHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 44567788999999999999887 3343210 00111 11222222222211 24567778899999
Q ss_pred cCChHHHHHHHHHh-CCC-CchhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 419 KGEVWRAQRMIREL-GFG-SYGVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 419 ~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
.|++++|+..++++ ... -+...|..++.++...|+.++|++.|+++.+
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999987 333 4567889999999999999999999998854
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.035 Score=50.57 Aligned_cols=116 Identities=9% Similarity=0.006 Sum_probs=58.9
Q ss_pred CChhHHHHHHHHHhhCCCCCCCHh-H-HHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCChHH
Q 048766 347 GDLTKVIELFEQLKTVRDLQPDSV-T-FLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEVWR 424 (525)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~p~~~-~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (525)
.+.+.+..++..........++.. . ...+.......+. .+.+...+...... ..+.......+....+.+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV-TDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC-CHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence 466666666666655331222211 1 1122223333444 55566665555432 2333333344444555667777
Q ss_pred HHHHHHHhCCCCc--hhHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 048766 425 AQRMIRELGFGSY--GVVWRALLSASGACSDLDVARISAAEVIK 466 (525)
Q Consensus 425 A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 466 (525)
+...++.++..+. .....-++.++...|+.+.|...|..+..
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 7777776643332 22224456666677777777777776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.00 E-value=0.0042 Score=45.72 Aligned_cols=83 Identities=13% Similarity=-0.118 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHhCCCCchhHHHHHHHHHhc----CCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhh----ccChhHH
Q 048766 420 GEVWRAQRMIRELGFGSYGVVWRALLSASGA----CSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTS----HGNWDVA 491 (525)
Q Consensus 420 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 491 (525)
.+.++|.+.+++.-...++.....+...|.. ..|.++|.+.|+++.+.+ ++.+...|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 4455555555554112233333334443332 457888888888887765 57777888888776 4578888
Q ss_pred HHHHHHHHHcCCc
Q 048766 492 SVMRNFMRERGLR 504 (525)
Q Consensus 492 ~~~~~~~~~~~~~ 504 (525)
.++|++..+.|..
T Consensus 115 ~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 115 VKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCH
Confidence 8888888877753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.0014 Score=46.58 Aligned_cols=74 Identities=7% Similarity=0.003 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHHhccC---ChHHHHHHHHHh-CCCC-c-hhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHH
Q 048766 403 KPTVEHCCSMIRLMGQKG---EVWRAQRMIREL-GFGS-Y-GVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYV 476 (525)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 476 (525)
.+++.+-..++.++.+.. +.++++.+++++ ...| + ...+..+..+|.+.|++++|.+.++++++.+|+|..+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 355666667777777654 456788888876 2234 3 256777888888888888888888888888888776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.93 E-value=0.0041 Score=44.11 Aligned_cols=70 Identities=9% Similarity=-0.093 Sum_probs=57.2
Q ss_pred CCchhHHHHHHHHHhcCC---ChHHHHHHHHHHHhhcCCCh-hHHHHHHHHHhhccChhHHHHHHHHHHHcCCc
Q 048766 435 GSYGVVWRALLSASGACS---DLDVARISAAEVIKLEGDSD-YVYVMLCNLYTSHGNWDVASVMRNFMRERGLR 504 (525)
Q Consensus 435 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 504 (525)
.+...+-..+++++.++. +.++++.+++++++.+|.+. ..+..|+.+|.+.|++++|+++++++.+..+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 345556666777777654 56799999999999888764 68899999999999999999999999887654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.16 E-value=0.11 Score=36.17 Aligned_cols=141 Identities=8% Similarity=0.024 Sum_probs=95.5
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCHhHHHHHHHHHcCCCCCcchHHHHHHHhhhhhCCCCChhHHHHHHHHHhccCCh
Q 048766 343 YARNGDLTKVIELFEQLKTVRDLQPDSVTFLNVLAACSHTDIPFDKVSEYFESMTKDYGIKPTVEHCCSMIRLMGQKGEV 422 (525)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (525)
+...|..++..+++.+... ..+..-|+.++--....-+ -+-..+.++.+-+-+.+. .+++.
T Consensus 12 ~ildG~ve~Gveii~k~~~----ss~~~E~NW~ICNiidt~d-C~~v~~~Ld~IG~~FDls--------------~C~Nl 72 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESID-CRYMFQVLDKIGSYFDLD--------------KCQNL 72 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCC-HHHHHHHHHHHGGGSCGG--------------GCSCT
T ss_pred HHHhhhHHhHHHHHHHHcc----cCCccccceeeeecccccc-hHHHHHHHHHHhhhcCch--------------hhhcH
Confidence 3456778888888887766 2344556666655555555 666666666664432222 23444
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHHHHHhhccChhHHHHHHHHHHHcC
Q 048766 423 WRAQRMIRELGFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLCNLYTSHGNWDVASVMRNFMRERG 502 (525)
Q Consensus 423 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 502 (525)
......+-.++ .+.......+....++|+-+.-.+++..+++.+.-+|.....++.+|.+-|...++.+++.+.-++|
T Consensus 73 k~vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 73 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 44444444432 2344555566777888999999999999888765588999999999999999999999999999988
Q ss_pred Cc
Q 048766 503 LR 504 (525)
Q Consensus 503 ~~ 504 (525)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 74
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.84 E-value=0.13 Score=37.13 Aligned_cols=109 Identities=8% Similarity=-0.033 Sum_probs=55.4
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CCCHHHHH
Q 048766 247 RVPEALHLFGEMQSKDVPMDEYTFSTMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSK----CGQVEIAD 322 (525)
Q Consensus 247 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 322 (525)
++++|+.+|++..+.|.. . ....+. .....+.+++...++...+.|. +.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccchhhHHHH
Confidence 566777777777666522 1 122221 2334456666666666666552 2233334444432 33455666
Q ss_pred HHHHhcc-CCCHhHHHHHHHHHHh----cCChhHHHHHHHHHhhCC
Q 048766 323 SMFRSLC-RKNLVTWNAMITGYAR----NGDLTKVIELFEQLKTVR 363 (525)
Q Consensus 323 ~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 363 (525)
++|+... ..++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6665554 2344444445444443 345556666666655544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.58 E-value=0.19 Score=34.96 Aligned_cols=119 Identities=13% Similarity=-0.050 Sum_probs=68.8
Q ss_pred HhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHHHccCCHHHHHHHHhcCCC---------------------CCccc
Q 048766 13 SSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFYRKINSLADAHKMFVEIPQ---------------------PSVVS 71 (525)
Q Consensus 13 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~ 71 (525)
+.-.|..++..++......+. +..-||=++--....-+-+...++++.+-. .+...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~ 88 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 88 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence 445677788888877776654 223333333333333333344444433321 23344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHccc
Q 048766 72 WNSLISGYVQSGKYRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSL 135 (525)
Q Consensus 72 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 135 (525)
.+.-++.+..+|+-++-.++++.+.+. -+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 566666677777777777777766553 366666666777777777777777777777666664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.94 Score=40.59 Aligned_cols=320 Identities=9% Similarity=0.030 Sum_probs=160.8
Q ss_pred HHhccCchhhhhHHHHHHHHhCCCchHHHHHHHHHHH--HccCCHHHHHHHHhcCCC-CCc-ccHHHHHHHHHhcCChHH
Q 048766 12 ASSDLGWDTYCQQLHCYILKSGFLSNVFVSTALMGFY--RKINSLADAHKMFVEIPQ-PSV-VSWNSLISGYVQSGKYRK 87 (525)
Q Consensus 12 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~-~~~-~~~~~ll~~~~~~~~~~~ 87 (525)
...+.|+...+.++...+... + ...|-..-..- .......++..++++-+. |-. ..-..-+..+.+.+++..
T Consensus 15 ~a~~~~~~~~~~~~~~~L~dy--p--L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~ 90 (450)
T d1qsaa1 15 QAWDNRQMDVVEQMMPGLKDY--P--LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (450)
T ss_dssp HHHHTTCHHHHHHHSGGGTTS--T--THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHhhhcCC--C--CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHH
Confidence 344666666666666655321 2 22222222221 223456666666666554 211 112233455666667665
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHHHHHHhcCCHHHHHHHHhhccC
Q 048766 88 ALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLIDMYGKCGSVEDAIGVFGEMID 167 (525)
Q Consensus 88 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 167 (525)
.+..+. ..+++...-.....+....|+.+.|...+..+-..| ...+..+..+...+...|.+.
T Consensus 91 ~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~lt----------- 153 (450)
T d1qsaa1 91 LLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD----------- 153 (450)
T ss_dssp HHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC-----------
T ss_pred HHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCCC-----------
Confidence 443331 123344444455566666777777777766666555 334445555555554444322
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCcccHHHHHHHHHh--c
Q 048766 168 KDIISWNSVIAASARNGNLELAFGFLHRLPNPDTISYNEVINGIAQFGDIEDAIMILSSMPSPNSSSWNSILTGYVN--R 245 (525)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~ 245 (525)
...+-.-+......|++..|..++..++..........+........+ ........ .+......+..++.+ .
T Consensus 154 --~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~~~~-~~~~~~~~~~~~l~rla~ 227 (450)
T d1qsaa1 154 --PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG-ATDFTRQMAAVAFASVAR 227 (450)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-CCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHhcCC-CChhhhHHHHHHHHHHhc
Confidence 112222334455567777777777666544434444444443332222 22222221 122222222222222 3
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHH----HHHHHhccccchHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCCHHHH
Q 048766 246 NRVPEALHLFGEMQSKDVPMDEYTFS----TMLSGIAGLSALTWGMLIHSCVIKQGLDASIVVASALLDMYSKCGQVEIA 321 (525)
Q Consensus 246 ~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 321 (525)
.+.+.+..++....... ..+..... .+.......+..+.+..........+. +.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 46777777777765542 22222221 222333445566667666666555442 233334444555667788888
Q ss_pred HHHHHhccCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048766 322 DSMFRSLCRK---NLVTWNAMITGYARNGDLTKVIELFEQLKT 361 (525)
Q Consensus 322 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (525)
...++.+... .....-=+..++...|+.+.|...|..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 8888877632 122233456777788888888888887764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.25 E-value=1.7 Score=28.55 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHcccCChHHHHHHHHHHHHcccCCCcchhhHHH
Q 048766 85 YRKALNLFVELERSEIYADAYSFTSALAACGQLGSLQLGMAIHSKIVKYSLERGVVIANCLI 146 (525)
Q Consensus 85 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (525)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++..+... .++..+|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 34455556666666777777777777777777777777777777665442 33445555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.62 E-value=4.2 Score=26.59 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHh---CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCChhHHHHHH
Q 048766 421 EVWRAQRMIREL---GFGSYGVVWRALLSASGACSDLDVARISAAEVIKLEGDSDYVYVMLC 479 (525)
Q Consensus 421 ~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 479 (525)
|.-++.+-++.+ ..-|++.+..+.+.+|.+.+|+..|+++++-+...-.++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444555555554 56788899999999999999999999999887765432455555443
|