Citrus Sinensis ID: 048767
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FLH0 | 1042 | Putative nuclear matrix c | no | no | 0.809 | 0.809 | 0.296 | 5e-70 |
| >sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1 | Back alignment and function desciption |
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Score = 266 bits (681), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 268/904 (29%), Positives = 462/904 (51%), Gaps = 61/904 (6%)
Query: 2 FTPQRKALSGWSLTPRGEKNGTGSVSNPTTVDGLTGKGKSIVAFTEPRTPQNGVGLADDV 61
TP A + ++TP + + +P T + + + K F E D
Sbjct: 12 ITPSTAATNRLTITP-----NSRVLKSPLTEEIMWKRLKD-AGFDEQSIKNR------DK 59
Query: 62 ESLAEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAI 121
+L ++KLE+E+++YQ+NMGLLL+EK E SS+YEE+K + E+ RE++A++ A+
Sbjct: 60 AALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSAL 119
Query: 122 TDVEKREENLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKS 181
+ +KREE+L+K +G+ K+C+ LEK L EMR+E AE K +A S ++EA+ ++ +K
Sbjct: 120 AEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKL 179
Query: 182 LEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQR 241
+ E K+R+ +A AE NR ERK E+ESRE L ASF +E E E +R
Sbjct: 180 ADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIER 239
Query: 242 EDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLM 301
+ L E + LQ ERL+ Q +NQRE+ + + + EK L+ A+ + +
Sbjct: 240 QTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFE 299
Query: 302 RKEDDINKRLANLITKEKE---------------YDAARK-------------SLEMKEE 333
K+ ++ LA L K +E Y +++K SL KE+
Sbjct: 300 DKKSNLEIALA-LCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQ 358
Query: 334 ELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVEVEKK 393
EL EEK+ ++E ++ +L + L ++ + + E++ K K+ + +++SK E +
Sbjct: 359 ELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELR 418
Query: 394 EAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQL 453
E +I +E+ + ++E LE + +KEKD+ K +L+ +EK + + E+++ + L
Sbjct: 419 EVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTML 478
Query: 454 LADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCR 513
+KE + EL++ + E + ++ +L + E +E L+ +LKE++ R
Sbjct: 479 EDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLR 538
Query: 514 LQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIK 573
Q+ +L EA+ LK +K FE EWE +D KR E+ KE + I+ Q E E + IK
Sbjct: 539 AQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIK 598
Query: 574 RDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRKLESD 633
++ + K + E+L +E F M E S K + ER L E+QKR+LE
Sbjct: 599 EERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYC 658
Query: 634 MQNRQEELEKDLKEKERLFEEEKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDS 693
++N++EELE +++E+ FE+EK+ E I L+++A KE+E +++E +L+ E+ E+
Sbjct: 659 IENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKL 718
Query: 694 HRKHLEGEQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFVEKQKKCEHCAEITSEF 753
R+ E E ++ ++ L + L+ QR + ERD + +E+ KK E+ +
Sbjct: 719 DRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDM 778
Query: 754 VL---------------SDLVQEIV-KSEVPPLPRVANDYVNEKKNSEMSPDVLASGSPA 797
+ S L Q++V + + L + N + S + +P+
Sbjct: 779 SMAKMQLSNLERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMERQNGLTPS 838
Query: 798 SAGTISWLRKCTSKIFKLSPSKKDENTVVRELTEETPSSGGQTKLQESSRRLGQTNEPDL 857
SA SW+++CT+ IFK SP K +T++ EE + KL ESSRR + L
Sbjct: 839 SATPFSWIKRCTNLIFKTSPEK---STLMHHYEEEGGVPSEKLKL-ESSRREEKAYTEGL 894
Query: 858 SFAI 861
S A+
Sbjct: 895 SIAV 898
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | ||||||
| 224127598 | 1156 | predicted protein [Populus trichocarpa] | 0.975 | 0.878 | 0.639 | 0.0 | |
| 255570013 | 1163 | DNA double-strand break repair rad50 ATP | 0.980 | 0.877 | 0.633 | 0.0 | |
| 449525632 | 1204 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.983 | 0.850 | 0.590 | 0.0 | |
| 449447476 | 1205 | PREDICTED: putative nuclear matrix const | 0.983 | 0.849 | 0.588 | 0.0 | |
| 307136479 | 1205 | nuclear matrix constituent-like protein | 0.983 | 0.849 | 0.589 | 0.0 | |
| 356526607 | 1191 | PREDICTED: putative nuclear matrix const | 0.984 | 0.860 | 0.564 | 0.0 | |
| 356568883 | 1191 | PREDICTED: putative nuclear matrix const | 0.983 | 0.859 | 0.567 | 0.0 | |
| 356526609 | 1190 | PREDICTED: putative nuclear matrix const | 0.983 | 0.860 | 0.560 | 0.0 | |
| 15220369 | 1132 | protein little nuclei1 [Arabidopsis thal | 0.970 | 0.892 | 0.542 | 0.0 | |
| 9828634 | 1166 | F1N21.5 [Arabidopsis thaliana] | 0.970 | 0.866 | 0.525 | 0.0 |
| >gi|224127598|ref|XP_002329317.1| predicted protein [Populus trichocarpa] gi|222870771|gb|EEF07902.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1192 bits (3085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/1059 (63%), Positives = 828/1059 (78%), Gaps = 44/1059 (4%)
Query: 1 MFTPQRKALSGWSLTPR---GEKNGTGSVSNPTTVDGLTGKGKSIVAFTEPRTPQNGVGL 57
MFTPQ+K SGWSLTPR G+KNG+ S S+P KGKS V F E TP NGV
Sbjct: 1 MFTPQKKVWSGWSLTPRSEAGQKNGSESGSDP--------KGKS-VGFVEQVTP-NGVRP 50
Query: 58 ADDVESLAEKVSKLENELFEYQYNMGLLLIEKKEWSSKYEELKQTFAEAKDALKREQAAH 117
D E LA+KVSKLENELFEYQYNMGLLLIEKKEW SK+EEL Q FAEA +A+KREQAAH
Sbjct: 51 NLDGEYLADKVSKLENELFEYQYNMGLLLIEKKEWGSKHEELMQAFAEATEAVKREQAAH 110
Query: 118 LIAITDVEKREENLRKALGVEKQCVLDLEKALREMRSENAEIKFTADSKLAEANALVTSI 177
LIA++D EK+EENLR+ALGVEKQCVLDLEKA+REMRSENA+IKFTADSKLAEANALV SI
Sbjct: 111 LIALSDAEKQEENLRRALGVEKQCVLDLEKAVREMRSENADIKFTADSKLAEANALVMSI 170
Query: 178 EEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRESALRMERASFIAEREAYEGTF 237
EEKSLEVE KLR+ DAK+AE++RKSSEI+RK ++ESRESALR ER SFIAE+E YE TF
Sbjct: 171 EEKSLEVEAKLRAADAKLAEVSRKSSEIQRKLLDVESRESALRRERLSFIAEKEVYETTF 230
Query: 238 SQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATN 297
S+QREDL+EWE+KLQ+GEERL K QRI+NQREE+ANE ++I KQKEKDLEEAQ+KI+ N
Sbjct: 231 SKQREDLQEWEKKLQEGEERLSKSQRIINQREERANENDRILKQKEKDLEEAQKKIEDAN 290
Query: 298 LSLMRKEDDINKRLANLITKEK------EYDAARKSLEMKEEELRQLEEKLNAREKVEVE 351
L RKEDDI+ RL NL KEK E+DA RK LE+KE ELR LEEKLN RE+VE++
Sbjct: 291 SILKRKEDDISNRLTNLTIKEKACFFFTEFDATRKKLEVKEVELRVLEEKLNERERVEIK 350
Query: 352 KLLDEHKASLDAKQREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMAL 411
KL DEH A LD K+ EF+LE +QK+K+ D+DLK+KV+E+EK+E EINHKEEK AKRE AL
Sbjct: 351 KLTDEHNAILDVKKHEFELEAEQKKKSLDEDLKNKVIELEKRETEINHKEEKAAKREQAL 410
Query: 412 EKRLEKCKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIR 471
+K+LEKCK+KE + ESK K L REK ++SE+KNLE EK QL + KE+ L KAELEK R
Sbjct: 411 DKKLEKCKEKENEFESKSKSLKEREKAIRSEQKNLEGEKNQLESAKENFLNLKAELEKTR 470
Query: 472 DANEQQLLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKE 531
+NE+QLLKI+EEK +L++SEEER+EY RLQ+ELKE+I KCRLQEE+LLKEA+DLKQQK
Sbjct: 471 ASNEEQLLKIHEEKERLKVSEEERSEYARLQAELKEEINKCRLQEELLLKEADDLKQQKG 530
Query: 532 NFEKEWEQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALE 591
NFE+EWE LDEKRAE EKELK I EQ EK EK +LSEEERI+ +++ E++IKRE EAL+
Sbjct: 531 NFEREWEDLDEKRAEAEKELKSIHEQKEKFEKYRLSEEERIRNERKETENYIKRELEALQ 590
Query: 592 VAKESFKATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERL 651
VAKESF+A M+HE+S++ EKA++ER Q+LH E+QK +LE+++Q RQEE+++ L+EKE+L
Sbjct: 591 VAKESFEANMEHERSVMAEKAQNERNQMLHSIEMQKTELENELQKRQEEMDRLLQEKEKL 650
Query: 652 FEEEKERELSNINYLRDIARKEMEEMKLERLKLEKEKQEVDSHRKHLEGEQVGIRKDIDM 711
FEEE+ERE NIN+LRD+AR+EME+MKLERL++EKEKQEVD ++HL+ +Q+ +R+DID
Sbjct: 651 FEEEREREFKNINFLRDVARREMEDMKLERLRIEKEKQEVDEKKRHLQEQQIEMREDIDK 710
Query: 712 LVGLTKMLKEQREQIVKERDRFLNFVEKQKKCEHCAEITSEFVLSDLV--QEIVKSEVPP 769
L L++ LK+ REQ +KE++RF+ FVE+ K C++C E+TSEFVLSDL+ QEI K++ P
Sbjct: 711 LGNLSRKLKDHREQFIKEKERFIVFVEQNKGCKNCGELTSEFVLSDLISSQEIEKADALP 770
Query: 770 LPRVANDYV---------NEKKNSEMSPDVLASGSPASAGTISWLRKCTSKIFKLSPSKK 820
++ N++V +EK +SEMSP + S SP +SWLRKCTSKI K S K+
Sbjct: 771 TSKLVNNHVTTDDGNPAASEKHDSEMSPTLAHSVSP-----VSWLRKCTSKILKFSAGKR 825
Query: 821 DENTVVRELTEETPSSGGQTKLQESSRRLGQT-NEPDLSFAIVNDSFDAQRFHSETSTRE 879
E ++ LT+ TP SG Q +E S+RL T NEP+LSFAIVNDS DAQR S+TS RE
Sbjct: 826 IEPAALQNLTDGTPLSGEQVNAEEMSKRLDFTENEPELSFAIVNDSLDAQRVLSDTSIRE 885
Query: 880 VEADQHKQVDGQNNLNGKAPEVQENSQPSDLNHGRQPRKRGRPRVSRTRSVKAVVQDAKA 939
VEA ++ Q+N NG APE+QE+SQPS L H QPRKRGRPRVSRTRSVK VVQDAKA
Sbjct: 886 VEAGHDLSINDQSNNNGTAPEIQEDSQPSGLKHDPQPRKRGRPRVSRTRSVKEVVQDAKA 945
Query: 940 ILGEGFELTESENLNGNADDSVQEAAESRGEPSLDDKGTSRNARKRNRAQSSQITTSEHD 999
+LG EL E A+DS +ESR E SL DKG RNARKRNR Q+SQI+ S+
Sbjct: 946 LLGGALELNE-------AEDSGHLKSESRDESSLADKGGPRNARKRNRTQTSQISVSDRY 998
Query: 1000 VDDSEAQSGSVVVGQPRKRRQKVDPAEQTPVPTRYNLRR 1038
DDSE S SV G RKRRQKV P QT T+YNLRR
Sbjct: 999 GDDSEGHSDSVTAGDRRKRRQKVVP-NQTQGQTQYNLRR 1036
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570013|ref|XP_002525969.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] gi|223534701|gb|EEF36393.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449525632|ref|XP_004169820.1| PREDICTED: LOW QUALITY PROTEIN: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449447476|ref|XP_004141494.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|307136479|gb|ADN34280.1| nuclear matrix constituent-like protein 1 [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
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| >gi|356526607|ref|XP_003531908.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356568883|ref|XP_003552637.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356526609|ref|XP_003531909.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|15220369|ref|NP_176892.1| protein little nuclei1 [Arabidopsis thaliana] gi|332196494|gb|AEE34615.1| protein little nuclei1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|9828634|gb|AAG00257.1|AC002130_22 F1N21.5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | ||||||
| TAIR|locus:2019529 | 1132 | LINC1 "AT1G67230" [Arabidopsis | 0.958 | 0.881 | 0.510 | 5e-250 | |
| TAIR|locus:2031875 | 1128 | LINC2 "LITTLE NUCLEI2" [Arabid | 0.915 | 0.844 | 0.382 | 1.3e-158 | |
| TAIR|locus:2012423 | 1085 | LINC3 "LITTLE NUCLEI3" [Arabid | 0.601 | 0.576 | 0.420 | 9.4e-137 | |
| TAIR|locus:2169950 | 1042 | LINC4 "LITTLE NUCLEI4" [Arabid | 0.528 | 0.527 | 0.284 | 1e-49 | |
| ZFIN|ZDB-GENE-030616-583 | 1376 | acin1a "apoptotic chromatin co | 0.485 | 0.367 | 0.280 | 2.7e-29 | |
| GENEDB_PFALCIPARUM|PF11_0486 | 2055 | PF11_0486 "MAEBL, putative" [P | 0.497 | 0.252 | 0.261 | 2.3e-27 | |
| UNIPROTKB|Q8IHP3 | 2055 | PF11_0486 "MAEBL, putative" [P | 0.497 | 0.252 | 0.261 | 2.3e-27 | |
| ZFIN|ZDB-GENE-050208-317 | 1422 | tnks1bp1 "tankyrase 1 binding | 0.524 | 0.383 | 0.237 | 9.3e-27 | |
| DICTYBASE|DDB_G0288069 | 1082 | DDB_G0288069 [Dictyostelium di | 0.529 | 0.509 | 0.238 | 1.2e-23 | |
| DICTYBASE|DDB_G0295683 | 1589 | DDB_G0295683 "cofilin/tropomyo | 0.517 | 0.339 | 0.249 | 2.1e-23 |
| TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2408 (852.7 bits), Expect = 5.0e-250, P = 5.0e-250
Identities = 522/1023 (51%), Positives = 672/1023 (65%)
Query: 27 SNPTTVDGLTGKGKSIVAFTEPRTPQNG-VGLA--DDVESLAEKVSKLENELFEYQYNMG 83
S PT G S + TP +G V DD L EK+S+LE ELFEYQ++MG
Sbjct: 12 STPTKATNPDSNGSSHGTGLDMVTPVSGRVSEIQFDDPRILPEKISELEKELFEYQHSMG 71
Query: 84 LLLIEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQCVL 143
LLLIEKKEWSS+YE L+Q F E + LK+E+ AHLIAI DVEKREE LRKALG+EKQC L
Sbjct: 72 LLLIEKKEWSSQYEALQQAFEEVNECLKQERNAHLIAIADVEKREEGLRKALGIEKQCAL 131
Query: 144 DLEKALREMRSENAEIKFTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSS 203
DLEKAL+E+R+ENAEIKFTADSKL EANALV S+EEKSLEVE KLR+VDAK+AE++RKSS
Sbjct: 132 DLEKALKELRAENAEIKFTADSKLTEANALVRSVEEKSLEVEAKLRAVDAKLAEVSRKSS 191
Query: 204 EIERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQR 263
++ERK+ E+E+RES+L+ ER S+IAEREA E T S+QREDLREWERKLQ+GEER+ K Q
Sbjct: 192 DVERKAKEVEARESSLQRERFSYIAEREADEATLSKQREDLREWERKLQEGEERVAKSQM 251
Query: 264 IVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITKEKEYDA 323
IV QRE++ANE +KI KQK K+LEEAQ+KIDA NL++ + EDD++ R+ +L +E+E D
Sbjct: 252 IVKQREDRANESDKIIKQKGKELEEAQKKIDAANLAVKKLEDDVSSRIKDLALREQETDV 311
Query: 324 ARKSXXXXXXXXXXXXXXXNAREKVEVEKLLDEHKASLDAKQREFDLEIDQKRKAFDDDL 383
+KS AREK+ V++L+DEH+A LD+ QREF+LE++QKRK+ DD L
Sbjct: 312 LKKSIETKARELQALQEKLEAREKMAVQQLVDEHQAKLDSTQREFELEMEQKRKSIDDSL 371
Query: 384 KSXXXXXXXXXAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGREKTMKSEE 443
KS AE H EEK+AKRE AL+++LEK K+KE D + +LK ++GREK +KSEE
Sbjct: 372 KSKVAEVEKREAEWKHMEEKVAKREQALDRKLEKHKEKENDFDLRLKGISGREKALKSEE 431
Query: 444 KNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQLRISEEERAEYLRLQS 503
K LETEKK+LL DKE IL KA +EK+ N+ QL +I +EK++LR++EEER+EYLRLQ+
Sbjct: 432 KALETEKKKLLEDKEIILNLKALVEKVSGENQAQLSEINKEKDELRVTEEERSEYLRLQT 491
Query: 504 ELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEVEKELKKISEQTXXXXX 563
ELKEQI KCR Q+E+L KEAEDLK Q+E+FEKEWE+LDE++A++ ELK I++Q
Sbjct: 492 ELKEQIEKCRSQQELLQKEAEDLKAQRESFEKEWEELDERKAKIGNELKNITDQKEKLER 551
Query: 564 XXXXXXXRIKRDKQLAEDHIKREWEALEVAKESFKATMDHEQSMITEKAESERRQLLHDF 623
R+K++KQ A ++++RE E LEVAK SF TM++E+SM+++KAESER QLLHD
Sbjct: 552 HIHLEEERLKKEKQAANENMERELETLEVAKASFAETMEYERSMLSKKAESERSQLLHDI 611
Query: 624 ELQKRKLESDMQNRQXXXXXXXXXXXXXXXXXXXXXXSNINYLRDIAXXXXXXXXXXXXX 683
E++KRKLESDMQ SNINYLRD+A
Sbjct: 612 EMRKRKLESDMQTILEEKERELQAKKKLFEEEREKELSNINYLRDVARREMMDMQNERQR 671
Query: 684 XXXXXQEVDSHRKHLEGEQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFVEKQKKC 743
EVDS + HLE +Q IRKD+D LV LTK LKEQREQ + ER RFL+ +E + C
Sbjct: 672 IEKEKLEVDSSKNHLEEQQTEIRKDVDDLVALTKKLKEQREQFISERSRFLSSMESNRNC 731
Query: 744 EHCAEITSEFVLSDLVQEIVKSEVPPLPRVANDYVNEKKNSEM---SPDVLASGSPASAG 800
C E+ SE VL EI E+P + ++AN NE EM SP G P + G
Sbjct: 732 SRCGELLSELVLP----EIDNLEMPNMSKLANILDNEAPRQEMRDISPTAAGLGLPVTGG 787
Query: 801 TISWLRKCTSKIFKLSPSKKDENTVVRELTEETPSSGGQTKLQESSRRLGQTNEPDLSFA 860
+SW RKCTSK+ KLSP K E +V L ++ P S Q + S + A
Sbjct: 788 KVSWFRKCTSKMLKLSPIKMTEPSVTWNLADQEPQSTEQANVGGPSTTVQ---------A 838
Query: 861 IVNDSFDAQRFHSETSTREVEADQHKQVDGQNNLNGKAPEVQENSQPS-DLNHGRQPRKR 919
SFD Q+ SET T+EVE Q+++N KA EV +S + D++ + + +
Sbjct: 839 ATTYSFDVQKAESETGTKEVEVTNVNSDGDQSDINSKAQEVAADSLSNLDVDGQSRMKGK 898
Query: 920 GRPRVSRTRSVKAVVQDAKAILGEGFELTESENLNGNADDSVQEAAESRGEPSLDDKGTS 979
G+ R RTRSVK VV DAKA+ GE L E + N DDS + S GE DK S
Sbjct: 899 GKARTRRTRSVKDVVDDAKALYGESINLYEPNDSTENVDDSTKA---STGETGRSDKAIS 955
Query: 980 RNARKRNRAQSSQITTSEHDVDDSEAQSGSVVVG-QPRKRRQKVDPAEQTPVP-TRYNLR 1037
+N RKR R S + T+E D ++S+ +S SV G RKRRQKV +Q V RYNLR
Sbjct: 956 KNGRKRGRVGSLRTCTTEQDGNESDGKSDSVTGGAHQRKRRQKVASEQQGEVVGQRYNLR 1015
Query: 1038 RPK 1040
RP+
Sbjct: 1016 RPR 1018
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| TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0288069 DDB_G0288069 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0295683 DDB_G0295683 "cofilin/tropomyosin type actin binding domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1041 | |||
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-18 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-16 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-14 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-14 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-13 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-11 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-11 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-10 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-09 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 7e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-08 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 1e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 4e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 4e-07 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 4e-07 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 4e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 6e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 7e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 8e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-06 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 1e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-06 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 2e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 3e-06 | |
| PRK04778 | 569 | PRK04778, PRK04778, septation ring formation regul | 3e-06 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 3e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-06 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 5e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 7e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 7e-06 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 7e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-05 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 1e-05 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 1e-05 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 1e-05 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 2e-05 | |
| pfam04111 | 356 | pfam04111, APG6, Autophagy protein Apg6 | 3e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 4e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 7e-05 | |
| PHA02562 | 562 | PHA02562, 46, endonuclease subunit; Provisional | 8e-05 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 2e-04 | |
| pfam05483 | 787 | pfam05483, SCP-1, Synaptonemal complex protein 1 ( | 2e-04 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 3e-04 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 4e-04 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 5e-04 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 6e-04 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 6e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 7e-04 | |
| COG4717 | 984 | COG4717, COG4717, Uncharacterized conserved protei | 7e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 8e-04 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 8e-04 | |
| pfam06160 | 559 | pfam06160, EzrA, Septation ring formation regulato | 8e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 9e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 0.001 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.001 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.001 | |
| pfam13514 | 1118 | pfam13514, AAA_27, AAA domain | 0.001 | |
| PRK00448 | 1437 | PRK00448, polC, DNA polymerase III PolC; Validated | 0.002 | |
| pfam05622 | 713 | pfam05622, HOOK, HOOK protein | 0.002 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 0.003 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.003 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 0.003 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 0.003 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.003 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 0.003 | |
| COG1293 | 564 | COG1293, COG1293, Predicted RNA-binding protein ho | 0.003 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 0.003 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.004 | |
| pfam13514 | 1118 | pfam13514, AAA_27, AAA domain | 0.004 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 0.004 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 0.004 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (222), Expect = 5e-18
Identities = 136/595 (22%), Positives = 267/595 (44%), Gaps = 27/595 (4%)
Query: 87 IEKKEWSSKYEELKQTFAEAKDALKREQAAHLIAITDVEKREENLRKALGVEKQCVLDLE 146
K E + K EE ++ EA+ A ++A + + +K E +KA +
Sbjct: 1199 ARKAEAARKAEEERKA-EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKF 1257
Query: 147 KALREMRSENAEIKFTADSK-----LAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRK 201
+ R + A+ L +A + E K E E K K AE +K
Sbjct: 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAE-EKKKADEAKKKAEEAKK 1316
Query: 202 SSEIERKSHELESRESALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKG 261
+ E ++K+ E + + A + + EA + ++ E K + E++ +
Sbjct: 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
Query: 262 QRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDATNLSLMRKEDDINKRLANLITK---- 317
++ + ++KA EK+K + K+K E+ ++ + + +K+ D K+ A K
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
Query: 318 EKEYDAARKSLEMKE--EELRQLEEKLNAREKVEVEKLLDEHKASLDAKQREFDLEIDQK 375
+K+ + A+K+ E K+ EE ++ E A++K E K DE K + ++ + + +
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAE---EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
Query: 376 RKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVE-SKLKDLNG 434
D K E +KK E EE E + +K + +K E K +L
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Query: 435 REKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKN-----QLR 489
E+ K+EEK E K+ DK L + E +K +A ++++K+YEE+ + +
Sbjct: 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
Query: 490 ISEEER--AEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEWEQLDEKRAEV 547
+EE + AE L+ E K+++ + + +E K+AE+LK+ +E + + + +K E
Sbjct: 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
Query: 548 EK---ELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESFKATMDHE 604
+K E KK E +K + E E K+ ++L + + + +A E+ K + + E
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733
Query: 605 QSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERLFEEEKERE 659
++ + + ++ + E +K+K+ + +++ E+ KEKE + EEE + E
Sbjct: 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
Length = 2084 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6 | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1) | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|205692 pfam13514, AAA_27, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|218661 pfam05622, HOOK, HOOK protein | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|205692 pfam13514, AAA_27, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1041 | |||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.45 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.32 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.15 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.06 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.02 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.91 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 98.83 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.82 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.8 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.73 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.67 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.56 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.51 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.48 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.41 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.27 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 98.16 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.14 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.08 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.91 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.81 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 97.75 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 97.73 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 97.46 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 97.37 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.36 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 96.94 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 96.9 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.45 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.45 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.35 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 96.28 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 96.22 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 96.21 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 96.0 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 95.97 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 95.77 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 95.72 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 95.56 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 95.53 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 95.49 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.43 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 95.33 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 95.2 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.06 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 94.9 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 94.83 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 94.7 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 94.62 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 94.51 | |
| PF12072 | 201 | DUF3552: Domain of unknown function (DUF3552); Int | 93.8 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 93.72 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 92.96 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 92.38 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 92.28 | |
| PF12072 | 201 | DUF3552: Domain of unknown function (DUF3552); Int | 91.03 | |
| PF09731 | 582 | Mitofilin: Mitochondrial inner membrane protein; I | 90.95 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 90.37 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 90.33 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 89.06 | |
| PRK12705 | 508 | hypothetical protein; Provisional | 88.44 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 88.39 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 88.1 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 87.17 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 86.83 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 86.72 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 85.63 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 84.78 | |
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 84.58 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 84.51 | |
| PRK09039 | 343 | hypothetical protein; Validated | 83.15 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 82.92 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 82.33 | |
| PF13863 | 126 | DUF4200: Domain of unknown function (DUF4200) | 81.2 |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-07 Score=107.45 Aligned_cols=149 Identities=16% Similarity=0.246 Sum_probs=67.6
Q ss_pred HHHHhHHHHHHHHHhhhhhhh---hcchhhhHHHHHHHHHHhhhhHHHHhhhhchhhHHHHhhhcchHHhhhhhhhhhHH
Q 048767 140 QCVLDLEKALREMRSENAEIK---FTADSKLAEANALVTSIEEKSLEVEVKLRSVDAKVAEINRKSSEIERKSHELESRE 216 (1041)
Q Consensus 140 qCVadLEKAL~emr~E~AEiK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeaklAEa~Rk~s~aeRKL~eVEaRE 216 (1041)
+.+..|+..+..+...+.+.. -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l 330 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444443332 12233444444444444444444444444444444555555555566666666665
Q ss_pred HHHHHHHhHHHHHHhhhhhhhHHHhhhHHHHHHHhhhhhhhhhhhhhhhhhhHHhhhhhHHHHHHhHHhHHHHHHhHHH
Q 048767 217 SALRMERASFIAEREAYEGTFSQQREDLREWERKLQDGEERLVKGQRIVNQREEKANEKEKIFKQKEKDLEEAQEKIDA 295 (1041)
Q Consensus 217 ~~LrRerlSf~~Erea~E~~i~~QRe~L~EweKkLqe~eerL~~~qr~LNqREe~~~E~~~~l~~kekeLEe~qkkie~ 295 (1041)
+.++.....+..+.+.+...+..-...+ .+.++.+.....-+..-+..+......+...+.+|++....|+.
T Consensus 331 ~~~~~~l~~~~~~~e~~~~~~~~le~~~-------~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~ 402 (880)
T PRK02224 331 EECRVAAQAHNEEAESLREDADDLEERA-------EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555544444444333333333333333 33333333333333333334444444444555555555555543
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PRK12705 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF13863 DUF4200: Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-22
Identities = 65/357 (18%), Positives = 155/357 (43%), Gaps = 22/357 (6%)
Query: 298 LSLMRKEDDINKRLANLITKEKEYDAARKSLEMKEEELRQLEEKLNAREKVEVEKLLDEH 357
L + R+E+++ + L ++ A L+ E++ QL E EK +++ L
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCE-----EKNLLQEKLQAE 904
Query: 358 KASLDAKQREFDLEIDQKRKAFDDDLKSKVVEVEKKEAEINHKEEKIAKREMALEKRLEK 417
+ +K+ E+E+ E+ + E+ +R L+ +K
Sbjct: 905 TELYAEAEEMRVRLAAKKQ------------ELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 418 CKDKEKDVESKLKDLNGREKTMKSEEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQ 477
+ + D+E +L++ + ++ E+ + + K++ D + + +L K R E++
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 478 LLKIYEEKNQLRISEEERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDLKQQKENFEKEW 537
+ + L EE+ +L+++ + I + ++ + K ++L++ K E E
Sbjct: 1013 ---VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Query: 538 EQLDEKRAEVEKELKKISEQTEKLEKEKLSEEERIKRDKQLAEDHIKREWEALEVAKESF 597
L E+ AE++ ++ ++ Q K E+E + R++ + + +K+ E LE
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE-LESHISDL 1128
Query: 598 KATMDHEQSMITEKAESERRQLLHDFELQKRKLESDMQNRQEELEKDLKEKERLFEE 654
+ ++ E++ KAE ++R L + E K +LE + + E + + ++
Sbjct: 1129 QEDLESEKAAR-NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1041 | |||
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.8 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.66 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 97.49 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 96.0 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 94.65 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 94.19 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 94.07 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 91.57 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 90.51 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 89.56 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 87.71 |
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
Probab=97.80 E-value=4.9e-05 Score=93.78 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 048767 701 EQVGIRKDIDMLVGLTKMLKEQREQIVKERDRFLNFVEK 739 (1041)
Q Consensus 701 e~~em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vEk 739 (1041)
+..++...+++......++..++..+..+...+-..|+.
T Consensus 1124 eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1124 HISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444443333
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1041 | ||||
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 9e-05 | |
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 0.002 | |
| d1smyd_ | 1504 | e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus t | 0.004 |
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (103), Expect = 9e-05
Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 18/175 (10%)
Query: 384 KSKVVEVEKKEAEINHKEEKIAKREMALEKRLEKCKDKEKDVESKLKDLNGRE--KTMKS 441
K K E+ + E+ ++ +M +EK L + +L++L K K
Sbjct: 589 KRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKP 648
Query: 442 EEKNLETEKKQLLADKEDILTEKAELEKIRDANEQQLLKIYEEKNQL---------RISE 492
+ E + + D + +++ + E + E + E +++
Sbjct: 649 YYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTK 708
Query: 493 EERAEYLRLQSELKEQIGKCRLQEEMLLKEAEDL-KQQKENFEKEWEQLDEKRAE 546
E + L+ + E + ++ E +L A+D+ + FE +++ ++ AE
Sbjct: 709 ERYQKLLKQKQEKETEL------ENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 757
|
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
| >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Length = 1504 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00