Citrus Sinensis ID: 048812
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 645 | 2.2.26 [Sep-21-2011] | |||||||
| O82380 | 738 | Pentatricopeptide repeat- | yes | no | 0.930 | 0.813 | 0.345 | 1e-126 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.889 | 0.774 | 0.356 | 1e-112 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.905 | 0.693 | 0.332 | 1e-108 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.910 | 0.673 | 0.307 | 1e-102 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.911 | 0.858 | 0.319 | 1e-101 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.897 | 0.834 | 0.311 | 1e-101 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.781 | 0.698 | 0.349 | 1e-100 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.764 | 0.689 | 0.348 | 1e-100 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.872 | 0.716 | 0.325 | 1e-99 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.903 | 0.708 | 0.327 | 1e-97 |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/713 (34%), Positives = 387/713 (54%), Gaps = 113/713 (15%)
Query: 41 SLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQ 98
S + ++ER C S+ + ++ H H+I T DP ++++F + L YA+++ +
Sbjct: 31 SRHISLIER-CVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDE 89
Query: 99 GDEPEIKIWNSIIENQLINGYPQEVFAI--YLYLVTRT-VLLNK---------------- 139
+P WN++I + P V +I +L +V+ + NK
Sbjct: 90 IPKPNSFAWNTLI--RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 140 -------------------------------CGKLKEVCQLFDKLPNRDVISWNTMISCY 168
CG L C++F + +DV+SWN+MI+ +
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207
Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
G + L L KM +E V VTMV ++SA K+R+LE G+ + ++EE+ + ++
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267
Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
+L N ++DMY KCG I +A++L E E D V WTT++ GY S + + AR + + M
Sbjct: 268 TLANAMLDMYTKCGSIEDAKRLFDAME--EKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 289 ERNLISWTLMISGM-----------------------LNQDAEFK-YKSCASIGALYHGI 324
++++++W +IS LNQ +CA +GAL G
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
W+H YIKK+ I ++ ++E + ++F+ + +++V++W+++I AM G
Sbjct: 386 WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445
Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
+A+D+F +M+E KP+ VTF + ACSH GLVDE + Y I P+ +HY
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505
Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
C+VD+LGR+G+LE++ FI +MPIPP S+W +LL AC+ H N+ LAE A L E +P
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565
Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
NDGAHVLL+NIYAK G+ +++S +R +R GLKK+ G S IE G +H+F SGD +P
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
Query: 550 HSEEIYLMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSE 592
SE++Y L+E+ L+ G ++E SL H E+LA+ +GLIST
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685
Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
IR++ NLR+CGDCHS K+ SQ+Y+REI++RD RFH F+ GQCSC D+W
Sbjct: 686 PKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/643 (35%), Positives = 347/643 (53%), Gaps = 69/643 (10%)
Query: 39 PVSLDVIMVERSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95
P S V +SC+ + E ++IH H++ D + T + V G L A ++
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191
Query: 96 IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155
+ ++ + ++I+ GY ++ +LFD++P
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGY-----------------------IENAQKLFDEIPV 228
Query: 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215
+DV+SWN MIS Y G Y+E L L M V PDE TMV+++SA + +E+G+ +
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 288
Query: 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN 275
HL++++ + ++N L+D+Y KCG++ A L R + DV+ W TL+ GY N
Sbjct: 289 HLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER--LPYKDVISWNTLIGGYTHMN 346
Query: 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI 335
EA LF EM+ + + +L +CA +GA+ G W+HVYI K
Sbjct: 347 LYKEALLLFQEMLRSGETPNDVTMLSIL--------PACAHLGAIDIGRWIHVYIDKRLK 398
Query: 336 SIDN-----------------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLF 378
+ N IE A+ +F+ I K++ W ++I +AM G A + DLF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 379 LEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438
M + G +PD +TF+ LLSACSH G++D G ++ Y + PK++HYGCM+DLLG
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518
Query: 439 AGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498
+G +E+ I M + PD IW SLL+AC+ H NV+L E ++L + +P N G++VLL
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578
Query: 499 ANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558
+NIYA AGR +++++ R L D G+KK G S IE VH+F GD F+P + EIY ML
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
Query: 559 NEIEMTLQQQGL---------------QETSLQHR-ERLAVAFGLISTSEKTTIRIVNNL 602
E+E+ L++ G +E +L+H E+LA+AFGLIST T + IV NL
Sbjct: 639 EEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 698
Query: 603 RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
R+C +CH K+ S++Y REI+ RD RFH F+ G CSC DYW
Sbjct: 699 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 230/691 (33%), Positives = 366/691 (52%), Gaps = 107/691 (15%)
Query: 59 RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
+IH ++ +D + + F G+L A+++ + E + W S+I
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 119 YPQEVFAIYLYLV----------TRTVLLNKCGKLKEV---------------------- 146
+ ++ ++ +V T +++ C KL+++
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274
Query: 147 ---------C-------QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
C +LFD+ ++ N M S Y G+ RE LG+ + M GV
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
PD ++M+S IS+ ++LR++ GK+ H ++ + + ++ N L+DMY KC + A ++
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
R + VV W ++V+GYV++ E D A F+ M E+N++SW +ISG++ Q + F+
Sbjct: 395 FDR--MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV-QGSLFE 451
Query: 311 -------------------------YKSCASIGALYHGIWVHVYIKKNQISID------- 338
+C +GAL W++ YI+KN I +D
Sbjct: 452 EAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTL 511
Query: 339 --------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390
+ E A +F+ ++ ++V WT+ I A AMAG+A++AI+LF +M E G KPD
Sbjct: 512 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571
Query: 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450
V F+ L+ACSHGGLV +G + +++ + P+ HYGCMVDLLGRAG LEE+ I
Sbjct: 572 VAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE 631
Query: 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510
MP+ P+ IW+SLL ACR NV++A +A + + P G++VLL+N+YA AGR +D
Sbjct: 632 DMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWND 691
Query: 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG- 569
M+++R+ +++ GL+K G S I+ G H+FTSGD +P I ML+E+ G
Sbjct: 692 MAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGH 751
Query: 570 ---LQETSL------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
L + +H E+LA+A+GLIS+++ TTIRIV NLR+C DCHSF K
Sbjct: 752 VPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKF 811
Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
S+VYNREI++RDN RFH + G+CSC D+W
Sbjct: 812 ASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/674 (30%), Positives = 345/674 (51%), Gaps = 87/674 (12%)
Query: 50 SCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS 109
S S+ E++H ++ + + + F + + A+++ + E ++ WNS
Sbjct: 207 SLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 266
Query: 110 IIENQLINGYPQEVFAIYLYLVTRTV---------------------------------- 135
II + NG ++ ++++ ++ +
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKAC 326
Query: 136 -------------LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLS 182
+ +KCG L +F ++ +R V+S+ +MI+ Y G+ E + L
Sbjct: 327 FSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 386
Query: 183 KMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242
+M EG+SPD T+ ++++ + R L+ GK +H +++E+ + + N L+DMY KCG
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446
Query: 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302
+ EA+ + + D++ W T++ GY K+ +EA LF+ ++E S
Sbjct: 447 SMQEAELVFSEMRVK--DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPD------ 498
Query: 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLF 347
+ +CAS+ A G +H YI +N D + LA+ LF
Sbjct: 499 -ERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557
Query: 348 SEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407
+I+ K++ WT +IA Y M G ++AI LF +M + G + D+++F++LL ACSH GLVD
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617
Query: 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRA 467
EG+ F + I+P ++HY C+VD+L R G L ++ FI +MPIPPD +IW +LL
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677
Query: 468 CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQL 527
CR H +VKLAE + + E +P N G +VL+ANIYA+A + + + R+R ++ GL+K
Sbjct: 678 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 737
Query: 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------Q 571
G S IE G V+ F +GD NP +E I L ++ + ++G +
Sbjct: 738 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 797
Query: 572 ETSLQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRF 631
E H E+LA+A G+IS+ IR+ NLR+CGDCH K S++ REIV+RD+ RF
Sbjct: 798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857
Query: 632 HRFQGGQCSCRDYW 645
H+F+ G CSCR +W
Sbjct: 858 HQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 217/679 (31%), Positives = 345/679 (50%), Gaps = 91/679 (13%)
Query: 46 MVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
++ +C+ ++ ++IH LI +L D + + + +F Y+ + P I
Sbjct: 19 LISVACT-VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIF 77
Query: 106 IWNSIIENQLINGYPQEVF---------AIYLYLVTRTVLLNKC---------------- 140
++NS+I + N E +YL+ T ++L C
Sbjct: 78 LYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLV 137
Query: 141 ----------------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178
G+L + +LFD++P+R V++W + S YT+ G +RE +
Sbjct: 138 VKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAI 197
Query: 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238
L KM GV PD +V ++SA + DL+ G+ + ++EE M+ + + LV++Y
Sbjct: 198 DLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLY 257
Query: 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLM 298
KCGK+ +A+ + + E D+V W+T++ GY ++ E LF +M++ NL
Sbjct: 258 AKCGKMEKARSVFD--SMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315
Query: 299 ISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA--------------- 343
I G L+ SCAS+GAL G W I +++ + N+ +A
Sbjct: 316 IVGFLS--------SCASLGALDLGEWGISLIDRHEF-LTNLFMANALIDMYAKCGAMAR 366
Query: 344 -YDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
+++F E+ EK++ + + I+ A GH + + +F + E+ G PD TF+ LL C H
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426
Query: 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWS 462
GL+ +G F + S VY +K ++HYGCMVDL GRAG L+++ I MP+ P+ +W
Sbjct: 427 AGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWG 486
Query: 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522
+LL CR ++ +LAE K L +P N G +V L+NIY+ GR D+ + +R + G
Sbjct: 487 ALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKG 546
Query: 523 LKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQETSL------- 575
+KK GYS IE G VH+F + D +P S++IY L ++ ++ G T+
Sbjct: 547 MKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVE 606
Query: 576 ---------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR 626
H E+LAVA GLIST IR+V NLR+CGDCH MK+ S++ REIV+R
Sbjct: 607 EEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVR 666
Query: 627 DNGRFHRFQGGQCSCRDYW 645
DN RFH F G CSC DYW
Sbjct: 667 DNNRFHCFTNGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/670 (31%), Positives = 348/670 (51%), Gaps = 91/670 (13%)
Query: 56 EFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQL 115
+ ++IH+ L+ L + T++ GD+ +A+Q+ P+I WN+II
Sbjct: 36 QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95
Query: 116 INGYPQEVFAIYLYLVTRTV---------------------------------------- 135
N + Q+ +Y + V
Sbjct: 96 RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155
Query: 136 -------LLNKCGKLKEVCQLFD--KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
L KC +L +F+ LP R ++SW ++S Y G E L + S+M
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215
Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
V PD V +VS+++A T L+DL+ G+++H + + ++I LL L MY KCG++
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275
Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
A+ L + + +++LW ++SGY K+ EA +F EM+ +++ T+ I+ ++
Sbjct: 276 AKILFDK--MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS-- 331
Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
+CA +G+L ++ Y+ ++ D ++E A +F
Sbjct: 332 ------ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385
Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
+++V +W+++I Y + G A++AI L+ ME G P+ VTF+ LL AC+H G+V EG+
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
F ++ + + I P+ QHY C++DLLGRAGHL+++ I MP+ P V++W +LL AC+ H
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
++V+L E+A + L DP N G +V L+N+YA A D ++ +R+++++ GL K +G S
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSL 575
+E G + F GD +P EEI + IE L++ G +ET
Sbjct: 565 VEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLC 624
Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
H ER+A+A+GLIST + T +RI NLR C +CH+ K+ S++ +REIV+RD RFH F+
Sbjct: 625 SHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFK 684
Query: 636 GGQCSCRDYW 645
G CSC DYW
Sbjct: 685 DGVCSCGDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/566 (34%), Positives = 310/566 (54%), Gaps = 62/566 (10%)
Query: 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199
CG++ +FD++ +RDV++WNTMI Y G+ E L +M V PDE+ + ++
Sbjct: 159 CGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI 218
Query: 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259
+SA + ++ + ++ FL E+ +++ LL LV MY G + A++ + +
Sbjct: 219 VSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR-- 276
Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK--------- 310
++ + T +VSGY K D+A+ +FD+ +++L+ WT MIS + D +
Sbjct: 277 NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC 336
Query: 311 --------------YKSCASIGALYHGIWVHVYIKKN----QISIDN-----------IE 341
+CA++G L WVH I N ++SI+N ++
Sbjct: 337 CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLD 396
Query: 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401
D+F ++ +NV W+S+I A +M G A A+ LF M++ +P++VTF+ +L CS
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456
Query: 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIW 461
H GLV+EG + + YNI PK++HYGCMVDL GRA L E+ I SMP+ +V IW
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516
Query: 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521
SL+ ACR H ++L + A K + E +P +DGA VL++NIYA+ R +D+ IR + +
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEK 576
Query: 522 GLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------- 570
+ K+ G S I+Q G H+F GD + S EIY L+E+ L+ G
Sbjct: 577 NVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDV 636
Query: 571 -----QETSLQHRERLAVAFGLISTSEKT------TIRIVNNLRICGDCHSFMKVTSQVY 619
++ L H E+LA+ FGL++ ++ IRIV NLR+C DCH F K+ S+VY
Sbjct: 637 EEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVY 696
Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
REI++RD RFH ++ G CSCRDYW
Sbjct: 697 EREIIVRDRTRFHCYKNGLCSCRDYW 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/534 (34%), Positives = 304/534 (56%), Gaps = 41/534 (7%)
Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
+ V ++F+ +P +DV+S+NT+I+ Y GMY + L ++ +MG + PD T+ S++
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
++ D+ GK +H ++ + + + LVDMY K +I +++++ R D +
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR--DGI 309
Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
W +LV+GYV++ +EA RLF +MV + + S ++ +CA + L+
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVI--------PACAHLATLHL 361
Query: 323 GIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
G +H Y+ + + NI+ A +F ++ + WT++I +A+
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421
Query: 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ 427
GH +A+ LF EM+ G KP+QV F+A+L+ACSH GLVDE + + + ++VY + +++
Sbjct: 422 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELE 481
Query: 428 HYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487
HY + DLLGRAG LEE+ NFI+ M + P S+WS+LL +C H+N++LAE + +
Sbjct: 482 HYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTV 541
Query: 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIF 547
D N GA+VL+ N+YA GR +M+++R+++R GL+K+ S IE H F SGD
Sbjct: 542 DSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRS 601
Query: 548 NPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVAFGLISTS 591
+P ++I L + ++++G +E H ERLAVAFG+I+T
Sbjct: 602 HPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTE 661
Query: 592 EKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
TTIR+ N+RIC DCH +K S++ REI++RDN RFH F G CSC DYW
Sbjct: 662 PGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (934), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 210/646 (32%), Positives = 343/646 (53%), Gaps = 83/646 (12%)
Query: 58 ERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLIN 117
+++HS ++ L + +S + GD A+ + + +I WN++I
Sbjct: 166 KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI------ 219
Query: 118 GYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177
A+++ + G++ F+++ RD+++WN+MIS + G
Sbjct: 220 -------ALHM----------QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRA 262
Query: 178 LGLLSKMGAEGV-SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
L + SKM + + SPD T+ S++SA L L +GK +H + + ISG +LN L+
Sbjct: 263 LDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALIS 322
Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
MY +CG + A++L+ + ++ + +T L+ GY+K + ++A+ +F + +R++++WT
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWT 382
Query: 297 LMISGMLNQ----DAEFKYKSCASIG-------------------ALYHGIWVH-VYIKK 332
MI G +A ++S G +L HG +H +K
Sbjct: 383 AMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS 442
Query: 333 NQI-----------------SIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
+I +I + A+DL E++ WTS+I A A GHA++A+
Sbjct: 443 GEIYSVSVSNALITMYAKAGNITSASRAFDLIR--CERDTVSWTSMIIALAQHGHAEEAL 500
Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
+LF M G +PD +T++ + SAC+H GLV++G + V I P + HY CMVDL
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560
Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
GRAG L+E+ FI MPI PDV W SLL ACR H+N+ L + A + L +P N GA+
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAY 620
Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
LAN+Y+ G+ ++ ++IR ++D +KK+ G+S IE VH F D +P EIY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680
Query: 556 LMLNEIEMTLQQQG---------------LQETSLQHR-ERLAVAFGLISTSEKTTIRIV 599
+ + +I +++ G ++E L+H E+LA+AFGLIST +KTT+RI+
Sbjct: 681 MTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIM 740
Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
NLR+C DCH+ +K S++ REI++RD RFH F+ G CSCRDYW
Sbjct: 741 KNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 223/681 (32%), Positives = 336/681 (49%), Gaps = 98/681 (14%)
Query: 47 VERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKI 106
V ++C ++ + +IH + M D ++ + +G A+ + + ++
Sbjct: 159 VLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS 218
Query: 107 WNSIIENQLINGYPQEVFAIYLYL-----VTRTVLLNKC--------------------- 140
WN++I +G +E + L VT LL+ C
Sbjct: 219 WNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 278
Query: 141 -----------------GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183
G+L++ ++FD++ RD+ISWN++I Y + L +
Sbjct: 279 ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 338
Query: 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH-------LFLEESTMKISGSLLNYLVD 236
M + PD +T++SL S ++L D+ +++ FLE+ T+ N +V
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG------NAVVV 392
Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
MY K G + A+ + + DV+ W T++SGY ++ EA +++ M E I+
Sbjct: 393 MYAKLGLVDSARAVFNW--LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA-- 448
Query: 297 LMISGMLNQDAEFKY-KSCASIGALYHGIWVHVYIKKNQISID---------------NI 340
NQ +C+ GAL G+ +H + KN + +D +
Sbjct: 449 ------ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRL 502
Query: 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC 400
E A LF +I N W ++IA + GH +KA+ LF EM + G KPD +TF+ LLSAC
Sbjct: 503 EDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562
Query: 401 SHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI 460
SH GLVDEG Y I P ++HYGCMVD+ GRAG LE + FI SM + PD SI
Sbjct: 563 SHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASI 622
Query: 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520
W +LL ACR H NV L + A +HL E +P + G HVLL+N+YA AG+ + + IR
Sbjct: 623 WGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHG 682
Query: 521 MGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQE 572
GL+K G+S +E V F +G+ +P EE+Y L ++ L+ G LQ+
Sbjct: 683 KGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQD 742
Query: 573 TS--------LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIV 624
+ H ERLA+AF LI+T KTTIRI NLR+CGDCHS K S++ REI+
Sbjct: 743 VEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREII 802
Query: 625 IRDNGRFHRFQGGQCSCRDYW 645
+RD+ RFH F+ G CSC DYW
Sbjct: 803 VRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 645 | ||||||
| 224092370 | 854 | predicted protein [Populus trichocarpa] | 0.906 | 0.685 | 0.437 | 1e-155 | |
| 297822703 | 740 | predicted protein [Arabidopsis lyrata su | 0.928 | 0.809 | 0.348 | 1e-126 | |
| 225434622 | 743 | PREDICTED: pentatricopeptide repeat-cont | 0.941 | 0.816 | 0.361 | 1e-126 | |
| 395146511 | 850 | hypothetical protein [Linum usitatissimu | 0.922 | 0.7 | 0.356 | 1e-125 | |
| 15227619 | 738 | pentatricopeptide repeat-containing prot | 0.930 | 0.813 | 0.345 | 1e-124 | |
| 224106277 | 738 | predicted protein [Populus trichocarpa] | 0.927 | 0.810 | 0.362 | 1e-124 | |
| 225423499 | 738 | PREDICTED: pentatricopeptide repeat-cont | 0.893 | 0.780 | 0.386 | 1e-124 | |
| 449455158 | 733 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.807 | 0.360 | 1e-123 | |
| 356513929 | 736 | PREDICTED: pentatricopeptide repeat-cont | 0.874 | 0.766 | 0.379 | 1e-121 | |
| 225456890 | 698 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.881 | 0.347 | 1e-121 |
| >gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa] gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 286/653 (43%), Positives = 404/653 (61%), Gaps = 68/653 (10%)
Query: 35 ANVCPVSLDVIMVERSCSSIDEFE---RIHSHLITTNLMRDPQISTQVFEFLVFTGDLGY 91
+ V P + ++ + +C+ + + E R+H +++ L + + + G +
Sbjct: 228 SGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDE 287
Query: 92 AQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFD 151
A ++ + DE E+ + ++ L++GY K K+ + QLFD
Sbjct: 288 AHGLLSRCDESEVDV---VLWTTLVSGYV------------------KSNKIDKARQLFD 326
Query: 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM 211
K+ R ++SW TM+S Y G Y E L L +M E V PDEV +V+++SA L D ++
Sbjct: 327 KMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDL 386
Query: 212 GKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271
G+++H F+ M + G L N L+D+Y KCGK+ EA + + W +++ G+
Sbjct: 387 GRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSA--ASWNSMLDGF 444
Query: 272 VKSNERDEARRLFDEMVERNLISWTLMISG-----MLNQDAEFKYK-------------- 312
+S D+AR F+++ E++++SW M++ + N+ E K
Sbjct: 445 CRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLI 504
Query: 313 ----SCASIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEK 353
SCA +GAL HGIWV+VYI+KN+I ID +E+AY++F++I EK
Sbjct: 505 SLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEK 564
Query: 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFL 413
NV++WT+++AAYAM G A +AIDL+LEMEE G KPD VTFIALL+ACSHGGLVDEGY +
Sbjct: 565 NVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYF 624
Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQN 473
+K YNI P + HYGCMVDLLGR GHLEE+ FI MPI PDVSIWSSL+RACR H N
Sbjct: 625 NKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHN 684
Query: 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533
V+LAE AFK L E DP N+GAHVLL+NIYA AGR DD+S++R KL + G+ KQ G+++IE
Sbjct: 685 VELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIE 744
Query: 534 QGGFVHKFTSGDIFNPHSEEIYLMLNEIE-MTLQQQGLQETSLQHRERLAVAFGLISTSE 592
Q G VH+F + ++ S +I ML +IE L +Q L +T+ QH ERLAVAFGLI+ E
Sbjct: 745 QNGVVHEFVASNLV---SADILCMLQDIERRLLVKQELSDTTSQHSERLAVAFGLINNQE 801
Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
+ IR+VN++R+C DCHS MK+ SQ Y+REIVIRDN RFHRF G CSC+DYW
Sbjct: 802 NSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/709 (34%), Positives = 385/709 (54%), Gaps = 110/709 (15%)
Query: 44 VIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQ--- 98
+ +++R CSS+ + ++ H+H+I T + DP ++++F + L YA+++ +
Sbjct: 35 ISLIDR-CSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQ 93
Query: 99 ---------------GDEPEIKIWNSI-IENQLINGYPQE-VFAIYLYLVTRTVLLN--- 138
G +P IW + + + YP + F + L+
Sbjct: 94 PNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQ 153
Query: 139 --------------------------KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMG 172
CG L C++F + +DV+SWN+MI+ + G
Sbjct: 154 SLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKG 213
Query: 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN 232
+ L L KM +E V VTMV ++SA K+RDLE G+ + ++EE+ + ++ +L N
Sbjct: 214 SPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLAN 273
Query: 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
++DMY KCG I +A++L E E D V WTT++ GY S + + AR + + M ++++
Sbjct: 274 AMLDMYTKCGSIEDAKRLFDAME--EKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDI 331
Query: 293 ISWTLMISGM-----------------------LNQDAEFK-YKSCASIGALYHGIWVHV 328
++W +IS LNQ +CA +GAL G W+H
Sbjct: 332 VAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHS 391
Query: 329 YIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
YIKKN I ++ ++E A ++F+ + +++V++W+++I AM G +
Sbjct: 392 YIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSE 451
Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
A+D+F +M+E KP+ VTF + ACSH GLVDE K Y I P+ +HY C+V
Sbjct: 452 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIV 511
Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
D+LGR+G+LE++ FI +MPIPP S+W +LL AC+ H N+ LAE A L E +P NDG
Sbjct: 512 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDG 571
Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
AHVLL+NIYAK+G+ D++S +R +R GLKK+ G S IE G +H+F SGD +P SE+
Sbjct: 572 AHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 631
Query: 554 IYLMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTI 596
+Y L+E+ L+ G ++E SL H E+LA+ +GLIST I
Sbjct: 632 VYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAI 691
Query: 597 RIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
R++ NLR+CGDCH+ K+ SQ+YNREI++RD RFH F+ GQCSC D+W
Sbjct: 692 RVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/720 (36%), Positives = 390/720 (54%), Gaps = 113/720 (15%)
Query: 32 RKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DL 89
R FAN +SL CS + ++IH+ ++ T L DP ++++ + L
Sbjct: 31 RYFANHPTLSLI-----DQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSL 85
Query: 90 GYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------------- 134
YAQQ+ Q P + WN++I + P + I+L ++ ++
Sbjct: 86 DYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKA 145
Query: 135 -------------------VLLN--------------KCGKLKEVCQLFDKLPNRDVISW 161
VLL KCG+L ++F +P RDV+SW
Sbjct: 146 ASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSW 205
Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE 221
N+MI+ + G E L L +M + V P+ +TMV ++SA K D E G+ +H ++E
Sbjct: 206 NSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265
Query: 222 STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEAR 281
+ + S +L N ++DMY KCG + +A++L + + E D+V WTT++ GY K E D A+
Sbjct: 266 NRIGESLTLSNAMLDMYTKCGSVEDAKRLFDK--MPEKDIVSWTTMLVGYAKIGEYDAAQ 323
Query: 282 RLFDEMVERNLISWTLMIS-----GMLNQDAEFKYK-------------------SCASI 317
+FD M +++ +W +IS G + E ++ +CA +
Sbjct: 324 GIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQL 383
Query: 318 GALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVI 362
GA+ G W+HVYIKK + ++ +++ A +F + K+V++W+++I
Sbjct: 384 GAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMI 443
Query: 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422
A AM GH + AI LF +M+E KP+ VTF +L ACSH GLV+EG F ++ VY +
Sbjct: 444 AGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGV 503
Query: 423 KPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482
P ++HY CMVD+LGRAG LEE+ I MP+ P S+W +LL AC H+NV LAE A
Sbjct: 504 LPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACS 563
Query: 483 HLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFT 542
L E +P N GA+VLL+NIYAKAG+ D +S +R +RD+GLKK+ G S IE G VH+F
Sbjct: 564 QLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFL 623
Query: 543 SGDIFNPHSEEIYLMLNEIEMTLQQQG----------------LQETSL-QHRERLAVAF 585
GD +P +++IY L+EI L+ G ++E +L H E+LA+AF
Sbjct: 624 VGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAF 683
Query: 586 GLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
GLIST + IRIV NLR+CGDCHS K+ S++Y+REI++RD RFH F+ G CSC DYW
Sbjct: 684 GLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/706 (35%), Positives = 386/706 (54%), Gaps = 111/706 (15%)
Query: 49 RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKI 106
+ C+S + ++IH+ ++ TN + DP ++++F F+ L YA+++ Q +P +
Sbjct: 147 QQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYS 206
Query: 107 WNSIIENQLINGYPQEVFAIYL---------------------------YLVTRTV---- 135
WN +I + P + +++ +LV + V
Sbjct: 207 WNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMA 266
Query: 136 ----------LLNK-------CGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYRE 176
+LN CG L +F+ + N+D++SWN+M++ + G +
Sbjct: 267 IKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDK 326
Query: 177 GLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236
L L +M EGV P+ VTMVS++SA K +L +G+ + +++ + M ++ ++ N +D
Sbjct: 327 ALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATID 386
Query: 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWT 296
M+ KCG++ A+ L E + DVV WTT++ GY K +E AR +FD M +++ +W
Sbjct: 387 MFVKCGEVEIARGLFDNME--KRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWN 444
Query: 297 LMISGMLNQD------AEFK-------------------YKSCASIGALYHGIWVHVYIK 331
++ISG A F+ +CA +GA+ G W+H YIK
Sbjct: 445 VLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIK 504
Query: 332 KNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAID 376
K +I ++ ++E A ++F I K+V++W+++IA AM G + AI+
Sbjct: 505 KERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIE 564
Query: 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436
LFL+M+ET KP+ VTF LL ACSH GLVDEG + RVY + PK +HY CMVD+L
Sbjct: 565 LFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVL 624
Query: 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496
GRAGHLEE+ FI MP+ P S+W +LL AC H N++LAE A L E +P N GA+V
Sbjct: 625 GRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYV 684
Query: 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYL 556
LL+N+YAK G + +S +R ++RD GLKK+ G S IE G VH+F GD +P S +IY
Sbjct: 685 LLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYA 744
Query: 557 MLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIV 599
L+EI L+ G ++E +L+ H E++A+AFGLI + IRIV
Sbjct: 745 KLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIV 804
Query: 600 NNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
NLR+C DCH+ K+ S+VY R+IV+RD RFH F GG CSC+DYW
Sbjct: 805 KNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850
|
Source: Linum usitatissimum Species: Linum usitatissimum Genus: Linum Family: Linaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g29760, chloroplastic; Flags: Precursor gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana] gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 246/713 (34%), Positives = 387/713 (54%), Gaps = 113/713 (15%)
Query: 41 SLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFT--GDLGYAQQIIRQ 98
S + ++ER C S+ + ++ H H+I T DP ++++F + L YA+++ +
Sbjct: 31 SRHISLIER-CVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDE 89
Query: 99 GDEPEIKIWNSIIENQLINGYPQEVFAI--YLYLVTRT-VLLNK---------------- 139
+P WN++I + P V +I +L +V+ + NK
Sbjct: 90 IPKPNSFAWNTLI--RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 140 -------------------------------CGKLKEVCQLFDKLPNRDVISWNTMISCY 168
CG L C++F + +DV+SWN+MI+ +
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207
Query: 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
G + L L KM +E V VTMV ++SA K+R+LE G+ + ++EE+ + ++
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267
Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
+L N ++DMY KCG I +A++L E E D V WTT++ GY S + + AR + + M
Sbjct: 268 TLANAMLDMYTKCGSIEDAKRLFDAME--EKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 289 ERNLISWTLMISGM-----------------------LNQDAEFK-YKSCASIGALYHGI 324
++++++W +IS LNQ +CA +GAL G
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 325 WVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAG 369
W+H YIKK+ I ++ ++E + ++F+ + +++V++W+++I AM G
Sbjct: 386 WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445
Query: 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429
+A+D+F +M+E KP+ VTF + ACSH GLVDE + Y I P+ +HY
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505
Query: 430 GCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489
C+VD+LGR+G+LE++ FI +MPIPP S+W +LL AC+ H N+ LAE A L E +P
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565
Query: 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNP 549
NDGAHVLL+NIYAK G+ +++S +R +R GLKK+ G S IE G +H+F SGD +P
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
Query: 550 HSEEIYLMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSE 592
SE++Y L+E+ L+ G ++E SL H E+LA+ +GLIST
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685
Query: 593 KTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
IR++ NLR+CGDCHS K+ SQ+Y+REI++RD RFH F+ GQCSC D+W
Sbjct: 686 PKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/707 (36%), Positives = 379/707 (53%), Gaps = 109/707 (15%)
Query: 45 IMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEP 102
I++++ C++ +++H+H++ T L DP +T++F + L YA ++ Q P
Sbjct: 35 ILIDK-CANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRP 93
Query: 103 EIKIWNSIIE----------------------------------------------NQLI 116
+ WN++I Q I
Sbjct: 94 NLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAI 153
Query: 117 NGYPQEV-FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMY 174
+G + F L++ + + G L +F K+ +D++SWN+MIS + G
Sbjct: 154 HGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSP 213
Query: 175 REGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234
E L L +M E P+ VTMV ++SA K DLE G+ ++E + + I+ L N +
Sbjct: 214 EEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAM 273
Query: 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294
+DMY KCG + +A++L + E E D+V WTT++ GY K + D ARR+FD M ++ +
Sbjct: 274 LDMYVKCGSLEDARRLFDKME--EKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITA 331
Query: 295 WTLMISG-----------------MLNQDAE-------FKYKSCASIGALYHGIWVHVYI 330
W +IS LN++ + +CA +GA+ G W+HVYI
Sbjct: 332 WNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYI 391
Query: 331 KKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAI 375
KK I ++ ++E A ++F + ++V++W+++IA AM GH + AI
Sbjct: 392 KKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAI 451
Query: 376 DLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
DLF +M+ET KP+ VTF LL ACSH GLVDEG F ++ VY + P +HY CMVD+
Sbjct: 452 DLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDI 511
Query: 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495
LGRAG LEE+ I MPI P S+W +LL ACR + NV+LAE A L ETD N GA+
Sbjct: 512 LGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAY 571
Query: 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIY 555
VLL+NIYAKAG+ D +SR+R ++ GL+K+ G S IE G +H+F GD +P S EIY
Sbjct: 572 VLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIY 631
Query: 556 LMLNEIEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTIRI 598
L+EI ++ G ++E +L H E+LA+A+GLI IRI
Sbjct: 632 SKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRI 691
Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
V NLR+CGDCHS K+ S++YNR+I++RD RFH F GG CSC DYW
Sbjct: 692 VKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 249/644 (38%), Positives = 362/644 (56%), Gaps = 68/644 (10%)
Query: 37 VCPVSLDVIMVERSCSSI---DEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQ 93
V P S + +SC+ + E ++IH H++ L DP + T + G+LGYA+
Sbjct: 128 VEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAE 187
Query: 94 QIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKL 153
+ + + +++ LI GY G L + +LF+++
Sbjct: 188 LVFSKS-----SLRDAVSFTALITGYTLR------------------GCLDDARRLFEEI 224
Query: 154 PNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213
P RD +SWN MI+ Y G + E L +M V+P+E TMV+++SA + LE+G
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284
Query: 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK 273
+ ++E+ + + L+N L+DMY KCG + +A+ L I E D++ W ++ GY
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLF--EGICEKDIISWNVMIGGYSH 342
Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
N EA LF +M + N+ + +L +CA +GAL G W+H YI K
Sbjct: 343 MNSYKEALALFRKMQQSNVEPNDVTFVSIL--------PACAYLGALDLGKWIHAYIDKK 394
Query: 334 QISI----------------DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377
+ + NIE A +F+ + K++ W ++I+ AM GHA A++L
Sbjct: 395 FLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALEL 454
Query: 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437
F +M + G +PD +TF+ +LSACSH GLV+ G S Y+I PK+QHYGCM+DLLG
Sbjct: 455 FRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLG 514
Query: 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497
RAG +E+ + +M + PD +IW SLL ACR H NV+L E A KHL E +P N GA+VL
Sbjct: 515 RAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVL 574
Query: 498 LANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLM 557
L+NIYA AGR DD++RIR KL D G+KK G S IE VH+F GD + S++IY M
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKM 634
Query: 558 LNEIEMTLQQQG---------------LQETSL-QHRERLAVAFGLISTSEKTTIRIVNN 601
L+EI+ L++ G +E SL H E+LA+AFGLIST +TTIRIV N
Sbjct: 635 LDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKN 694
Query: 602 LRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
LR+CG+CHS +K+ S+++NREI+ RD RFH F+ G CSC DYW
Sbjct: 695 LRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis sativus] gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis sativus] gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 253/702 (36%), Positives = 368/702 (52%), Gaps = 110/702 (15%)
Query: 51 CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG--DLGYAQQIIRQGDEPEIKIWN 108
CSS + + +H+ ++ T L DP ++++F + L YA+ + Q +P + WN
Sbjct: 35 CSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWN 94
Query: 109 SIIENQLINGYPQEVFAIYLYLVTRT---------------------------------- 134
++I + P + F I+L L+ +
Sbjct: 95 TLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIK 154
Query: 135 -------VLLNK-------CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGL 180
+LN CG L +LF + +DV+SWN+MIS + + L L
Sbjct: 155 LSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALEL 214
Query: 181 LSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240
KM E V P+ VTMV ++SA K DLE G+ + ++E +K+ +L N ++DMY K
Sbjct: 215 FLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTK 274
Query: 241 CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300
CG + +AQKL E+ E DV WT ++ GY K + D AR +F+ M + + +W ++IS
Sbjct: 275 CGSVDDAQKLFD--EMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLIS 332
Query: 301 GMLNQDAEFK-------------------------YKSCASIGALYHGIWVHVYIKKNQI 335
Q+ + K +CA +GA+ G W+HVYIK+ I
Sbjct: 333 AY-EQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI 391
Query: 336 SID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380
++ ++E A ++F + E++VY+W+++IA M G + AIDLF E
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFE 451
Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
M+E KP+ VTF +L ACSH GLVDEG F + VY + P+M+HY CMVD+LGRAG
Sbjct: 452 MQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAG 511
Query: 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500
LEE+ I M P S+W +LL AC H NV+L E A L + +P N GA VLL+N
Sbjct: 512 FLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSN 571
Query: 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE 560
IYAK GR + +S +R +RD LKK+ G S IE G VH+F GD +P S IY L E
Sbjct: 572 IYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEE 631
Query: 561 IEMTLQQQG----------------LQETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLR 603
I L+ G L+E +L H E+LA+AFGL++ + IR+V NLR
Sbjct: 632 IATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLR 691
Query: 604 ICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
ICGDCH+F K+ S+VY+R+I++RD RFH F+ G CSC DYW
Sbjct: 692 ICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/635 (37%), Positives = 362/635 (57%), Gaps = 71/635 (11%)
Query: 49 RSCS---SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK 105
+SC+ + E +++H+H + L P + T + G+L +A+ + D+ ++
Sbjct: 135 KSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVF---DKSTLR 191
Query: 106 IWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165
+++ LI GY E G + + +LFD++P +DV+SWN MI
Sbjct: 192 --DAVSFTALITGYVSE------------------GHVDDARRLFDEIPAKDVVSWNAMI 231
Query: 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
+ Y G + E L ++M VSP++ TMVS++SA LR LE+GK + ++ +
Sbjct: 232 AGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFG 291
Query: 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285
+ L+N LVDMY KCG+IG A+KL E + DV+LW T++ GY + +EA LF+
Sbjct: 292 KNLQLVNALVDMYSKCGEIGTARKLFDGME--DKDVILWNTMIGGYCHLSLYEEALVLFE 349
Query: 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI----- 340
M+ N+ + +L +CAS+GAL G WVH YI KN N+
Sbjct: 350 VMLRENVTPNDVTFLAVL--------PACASLGALDLGKWVHAYIDKNLKGTGNVNNVSL 401
Query: 341 --------------ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386
E+A +F + +++ W ++I+ AM GHA++A+ LF EM G
Sbjct: 402 WTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGF 461
Query: 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446
+PD +TF+ +LSAC+ G V+ G+ + S ++ Y I PK+QHYGCM+DLL R+G +E+
Sbjct: 462 QPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAK 521
Query: 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506
+ +M + PD +IW SLL ACR H V+ E+ + L E +P N GA+VLL+NIYA AG
Sbjct: 522 VLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAG 581
Query: 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566
R DD+++IR KL D G+KK G + IE G VH+F GD F+P SE I+ ML+E++ L+
Sbjct: 582 RWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLE 641
Query: 567 QQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHS 610
+ G +E +L QH E+LA+AFGLIST +TIRIV NLR+C +CHS
Sbjct: 642 ETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHS 701
Query: 611 FMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
K+ S+++NREI+ RD RFH F+ G CSC D W
Sbjct: 702 ATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/707 (34%), Positives = 394/707 (55%), Gaps = 92/707 (13%)
Query: 20 VRLGLVP-KMRISRKFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQ 78
V L L+P K ++ ++ P + +++E+ C +I + IH+HLI T L+ P+++
Sbjct: 3 VTLPLLPAKTPTAKTSISLFPENPKTLILEQ-CKTIRDLNEIHAHLIKTRLLLKPKVAEN 61
Query: 79 VFE--FLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEV------------- 123
+ E ++ + YA I RQ DEP+ +N +I + P E
Sbjct: 62 LLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQ 121
Query: 124 -----FAIYLYLVTRTVLLNK-----------------------------CGKLKEVCQL 149
F L + +R L++ CG+++ ++
Sbjct: 122 PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181
Query: 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL 209
FD++ R+V +WN+M + YT G + E + L +M + DEVT+VS+++A +L DL
Sbjct: 182 FDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADL 241
Query: 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269
E+G+ ++ ++EE +K + +L+ LVDMY KCG++ A++L ++D DVV W+ ++S
Sbjct: 242 ELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFD--QMDRRDVVAWSAMIS 299
Query: 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY 329
GY +++ EA LF EM + N+ + + +L+ SCA +GAL G WVH +
Sbjct: 300 GYSQASRCREALDLFHEMQKANIDPNEITMVSILS--------SCAVLGALETGKWVHFF 351
Query: 330 IKKNQISID---------------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKA 374
IKK ++ + ++E + ++F ++ KNV WT +I A G +KA
Sbjct: 352 IKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKA 411
Query: 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434
++ F M E +P+ VTFI +LSACSH GLVDEG D SR + I+P+++HYGCMVD
Sbjct: 412 LEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVD 471
Query: 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494
+LGRAG +EE+ FI +MPI P+ IW +LL +C+ H+NV++ E + K L +P + G
Sbjct: 472 ILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGD 531
Query: 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEI 554
++LL+NIYA GR +D ++R ++++ G+KK G SLIE G +H+F + D + SEEI
Sbjct: 532 YILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEI 591
Query: 555 YLMLNEIEMTLQQQGL---------------QETSL-QHRERLAVAFGLISTSEKTTIRI 598
Y + ++ ++ G +E+S+ H E+LA+AFGLI + TTIRI
Sbjct: 592 YNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRI 651
Query: 599 VNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
NLR+C DCH+ K+ S+V+NREIV+RD RFH F+ G CSC DYW
Sbjct: 652 TKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 645 | ||||||
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.643 | 0.562 | 0.333 | 1.7e-99 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.899 | 0.782 | 0.358 | 3.5e-98 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.787 | 0.617 | 0.369 | 5.4e-94 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.750 | 0.813 | 0.375 | 3.4e-92 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.776 | 0.575 | 0.356 | 1.5e-90 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.765 | 0.721 | 0.370 | 2.5e-90 | |
| TAIR|locus:2049562 | 584 | AT2G01510 "AT2G01510" [Arabido | 0.786 | 0.868 | 0.351 | 3.4e-90 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.818 | 0.801 | 0.344 | 6.3e-89 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.835 | 0.666 | 0.345 | 4.4e-88 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.781 | 0.636 | 0.360 | 4.4e-88 |
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 1.7e-99, Sum P(3) = 1.7e-99
Identities = 151/453 (33%), Positives = 255/453 (56%)
Query: 141 GKLKEVCQLFDKLPNRDV-ISWNTMISCYTSMGMYRE---GLGLLSKMGAEGVSPDEVTM 196
G + +LF K+ + DV S TM+ ++ R G + S + V+ +
Sbjct: 211 GSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLA 270
Query: 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN-YLVDMYFKCGKIGEAQKLLGRYE 255
+++ TK +E K L +EE ++L+ Y + ++ A+++L
Sbjct: 271 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA-----AREVLN--S 323
Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM-VERNL-ISWTLMISGMLNQDAEFKYKS 313
+ + D+V W L+S Y ++ + +EA +F E+ +++N+ ++ ++S + +
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL---------SA 374
Query: 314 CASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEISEKNVYLW 358
CA +GAL G W+H YIKK+ I ++ ++E + ++F+ + +++V++W
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434
Query: 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418
+++I AM G +A+D+F +M+E KP+ VTF + ACSH GLVDE +
Sbjct: 435 SAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMES 494
Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
Y I P+ +HY C+VD+LGR+G+LE++ FI +MPIPP S+W +LL AC+ H N+ LAE
Sbjct: 495 NYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAE 554
Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
A L E +P NDGAHVLL+NIYAK G+ +++S +R +R GLKK+ G S IE G +
Sbjct: 555 MACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMI 614
Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571
H+F SGD +P SE++Y L+E+ L+ G +
Sbjct: 615 HEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYE 647
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 232/648 (35%), Positives = 349/648 (53%)
Query: 37 VCPVSLDVI-------MVERSCSSIDEF---ERIHSHLITTNLMRDPQISTQVFEFLVFT 86
VC +SL ++ V +SC+ F ++IH H++ D + T + V
Sbjct: 123 VCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQN 182
Query: 87 GDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146
G L A ++ + ++ + + LI GY G ++
Sbjct: 183 GRLEDAHKVFDKSPHRDVVSYTA-----LIKGYASR------------------GYIENA 219
Query: 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206
+LFD++P +DV+SWN MIS Y G Y+E L L M V PDE TMV+++SA +
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQS 279
Query: 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT 266
+E+G+ +HL++++ + ++N L+D+Y KCG++ A L R + DV+ W T
Sbjct: 280 GSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER--LPYKDVISWNT 337
Query: 267 LVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326
L+ GY N EA LF EM+ + + +L A IG H +++
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL---GAIDIGRWIH-VYI 393
Query: 327 HVYIK--KNQIS-----ID------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373
+K N S ID +IE A+ +F+ I K++ W ++I +AM G A
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453
Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433
+ DLF M + G +PD +TF+ LLSACSH G++D G ++ Y + PK++HYGCM+
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513
Query: 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493
DLLG +G +E+ I M + PD IW SLL+AC+ H NV+L E ++L + +P N G
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573
Query: 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEE 553
++VLL+NIYA AGR +++++ R L D G+KK G S IE VH+F GD F+P + E
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633
Query: 554 IYLMLNEIEMTLQQQG-LQETS--LQ-------------HRERLAVAFGLISTSEKTTIR 597
IY ML E+E+ L++ G + +TS LQ H E+LA+AFGLIST T +
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 693
Query: 598 IVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
IV NLR+C +CH K+ S++Y REI+ RD RFH F+ G CSC DYW
Sbjct: 694 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
Identities = 204/552 (36%), Positives = 301/552 (54%)
Query: 128 LYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
L++ + + L + G+L++ ++FD++ RD+ISWN++I Y + L +M
Sbjct: 282 LFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRL 341
Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLF-LEESTMKISGSLLNYLVDMYFKCGKIG 245
+ PD +T++SL S ++L D+ +++ F L + ++ N +V MY K G +
Sbjct: 342 SRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVD 401
Query: 246 EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305
A+ + + DV+ W T++SGY ++ EA +++ M E I+ NQ
Sbjct: 402 SARAVFNW--LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA--------ANQ 451
Query: 306 DAEFKY-KSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSE 349
+C+ GAL G+ +H + KN + +D +E A LF +
Sbjct: 452 GTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQ 511
Query: 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG 409
I N W ++IA + GH +KA+ LF EM + G KPD +TF+ LLSACSH GLVDEG
Sbjct: 512 IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 571
Query: 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
Y I P ++HYGCMVD+ GRAG LE + FI SM + PD SIW +LL ACR
Sbjct: 572 QWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACR 631
Query: 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGY 529
H NV L + A +HL E +P + G HVLL+N+YA AG+ + + IR GL+K G+
Sbjct: 632 VHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGW 691
Query: 530 SLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG--------LQETS------- 574
S +E V F +G+ +P EE+Y L ++ L+ G LQ+
Sbjct: 692 SSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHI 751
Query: 575 -LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHR 633
+ H ERLA+AF LI+T KTTIRI NLR+CGDCHS K S++ REI++RD+ RFH
Sbjct: 752 LMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHH 811
Query: 634 FQGGQCSCRDYW 645
F+ G CSC DYW
Sbjct: 812 FKNGVCSCGDYW 823
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
Identities = 201/536 (37%), Positives = 307/536 (57%)
Query: 148 QLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDEVTMVSLISARTK 205
++F K+ +V WNT+I Y +G L +M G V PD T LI A T
Sbjct: 74 KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133
Query: 206 LRDLEMGKNLHLFLEESTMKISGSLL---NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
+ D+ +G+ +H + S GSL+ N L+ +Y CG + A K+ + + E D+V
Sbjct: 134 MADVRLGETIHSVVIRSGF---GSLIYVQNSLLHLYANCGDVASAYKVFDK--MPEKDLV 188
Query: 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322
W ++++G+ ++ + +EA L+ EM + + I +L+ +CA IGAL
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLS--------ACAKIGALTL 240
Query: 323 GIWVHVYIKK---------NQISID------NIELAYDLFSEISEKNVYLWTSVIAAYAM 367
G VHVY+ K + + +D +E A LF E+ +KN WTS+I A+
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 368 AGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426
G ++AI+LF ME T G P ++TF+ +L ACSH G+V EG+++ + Y I+P++
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRI 360
Query: 427 QHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486
+H+GCMVDLL RAG ++++ +I SMP+ P+V IW +LL AC H + LAE A + +
Sbjct: 361 EHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQ 420
Query: 487 TDPLNDGAHVLLANIYAKAGRLDDMSRIRMK-LRDMGLKKQLGYSLIEQGGFVHKFTSGD 545
+P + G +VLL+N+YA R D+ +IR + LRD G+KK G+SL+E G VH+F GD
Sbjct: 421 LEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD-GVKKVPGHSLVEVGNRVHEFLMGD 479
Query: 546 IFNPHSEEIYLMLNEIEMTLQQQG-----------LQETSLQ-----HRERLAVAFGLIS 589
+P S+ IY L E+ L+ +G ++E + H E++A+AF LIS
Sbjct: 480 KSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLIS 539
Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
T E++ I +V NLR+C DCH +K+ S+VYNREIV+RD RFH F+ G CSC+DYW
Sbjct: 540 TPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 193/541 (35%), Positives = 305/541 (56%)
Query: 136 LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195
+ +KCG L +F ++ +R V+S+ +MI+ Y G+ E + L +M EG+SPD T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255
+ ++++ + R L+ GK +H +++E+ + + N L+DMY KCG + EA+ +
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459
Query: 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315
+ D++ W T++ GY K+ +EA LF+ ++E S + +CA
Sbjct: 460 VK--DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPD-------ERTVACVLPACA 510
Query: 316 SIGALYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTS 360
S+ A G +H YI +N D + LA+ LF +I+ K++ WT
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 570
Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420
+IA Y M G ++AI LF +M + G + D+++F++LL ACSH GLVDEG+ F +
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630
Query: 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHA 480
I+P ++HY C+VD+L R G L ++ FI +MPIPPD +IW +LL CR H +VKLAE
Sbjct: 631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 690
Query: 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHK 540
+ + E +P N G +VL+ANIYA+A + + + R+R ++ GL+K G S IE G V+
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 750
Query: 541 FTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----------------QETSLQHRERLAVA 584
F +GD NP +E I L ++ + ++G +E H E+LA+A
Sbjct: 751 FVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMA 810
Query: 585 FGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDY 644
G+IS+ IR+ NLR+CGDCH K S++ REIV+RD+ RFH+F+ G CSCR +
Sbjct: 811 LGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGF 870
Query: 645 W 645
W
Sbjct: 871 W 871
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 199/537 (37%), Positives = 304/537 (56%)
Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
G+L + +LFD++P+R V++W + S YT+ G +RE + L KM GV PD +V ++
Sbjct: 160 GRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVL 219
Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
SA + DL+ G+ + ++EE M+ + + LV++Y KCGK+ +A+ + + E D
Sbjct: 220 SACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFD--SMVEKD 277
Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGAL 320
+V W+T++ GY ++ E LF +M++ NL I G L+ SCAS+GAL
Sbjct: 278 IVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLS--------SCASLGAL 329
Query: 321 YHGIWVHVYIKKNQISIDNIELA----------------YDLFSEISEKNVYLWTSVIAA 364
G W I +++ + N+ +A +++F E+ EK++ + + I+
Sbjct: 330 DLGEWGISLIDRHEF-LTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISG 388
Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
A GH + + +F + E+ G PD TF+ LL C H GL+ +G F + S VY +K
Sbjct: 389 LAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKR 448
Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
++HYGCMVDL GRAG L+++ I MP+ P+ +W +LL CR ++ +LAE K L
Sbjct: 449 TVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKEL 508
Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
+P N G +V L+NIY+ GR D+ + +R + G+KK GYS IE G VH+F +
Sbjct: 509 IALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLAD 568
Query: 545 DIFNPHSEEIYLMLNEI--EMTLQ-------------QQGLQETSL-QHRERLAVAFGLI 588
D +P S++IY L ++ EM L ++ +E L H E+LAVA GLI
Sbjct: 569 DKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLI 628
Query: 589 STSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
ST IR+V NLR+CGDCH MK+ S++ REIV+RDN RFH F G CSC DYW
Sbjct: 629 STDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
|
|
| TAIR|locus:2049562 AT2G01510 "AT2G01510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 803 (287.7 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 191/543 (35%), Positives = 290/543 (53%)
Query: 134 TVLLNKCGKLKEVC---QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190
T LL + ++C Q+FD++ + WNT+ Y + E L L KM GV
Sbjct: 47 TQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVR 106
Query: 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKL 250
PDE T ++ A ++L D G LH + + G + LV MY K G++ A+ L
Sbjct: 107 PDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFL 166
Query: 251 LGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310
++ D+V W ++ V++ A F++M + + + ML+ +
Sbjct: 167 FESMQVK--DLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQL- 223
Query: 311 YKSCASIGA-LY-----HGIWVHVYIKKNQISID----NIELAYDLFSEISEKNVYLWTS 360
IG +Y I ++ ++ ++ + N E A LF E+ ++NV W++
Sbjct: 224 --GSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWST 281
Query: 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEG--YDFLSKKSR 418
+I YAM G +++A+ LF M+ G +P+ VTF+ +LSACSH GLV+EG Y L +S
Sbjct: 282 MIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSN 341
Query: 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAE 478
N++P+ +HY CMVDLLGR+G LEE+ FI MP+ PD IW +LL AC H+++ L +
Sbjct: 342 DKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQ 401
Query: 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538
L ET P HVLL+NIYA AG+ D + ++R K+R +G KK YS +E G +
Sbjct: 402 KVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKI 461
Query: 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETSLQHR-ERLA 582
H F GD +P S+ IY L+EI +++ G +E SL H E+LA
Sbjct: 462 HFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLA 521
Query: 583 VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCR 642
+AFGLI IR++ NLR C DCH+F K S + + EI++RD RFH F+ G CSC+
Sbjct: 522 IAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCK 581
Query: 643 DYW 645
++W
Sbjct: 582 EFW 584
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 195/566 (34%), Positives = 328/566 (57%)
Query: 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171
+ + GY ++F + L+ V+ + CGKL++ ++FD++P R+++SW +MI Y
Sbjct: 100 QQAFVFGYQSDIF-VSSALI---VMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155
Query: 172 GMYREGLGLLSKM------GAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225
G + + L + + + D + +VS+ISA +++ + +++H F+ +
Sbjct: 156 GNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFD 215
Query: 226 ISGSLLNYLVDMYFKCGK--IGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRL 283
S+ N L+D Y K G+ + A+K+ + +D+ D V + +++S Y +S +EA +
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQI-VDK-DRVSYNSIMSVYAQSGMSNEAFEV 273
Query: 284 FDEMVERNLISWT-LMISGML---NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI-- 337
F +V+ ++++ + +S +L + + C + G+ V + + I +
Sbjct: 274 FRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYC 333
Query: 338 --DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
+E A F + KNV WT++IA Y M GHA KA++LF M ++G +P+ +TF++
Sbjct: 334 KCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVS 393
Query: 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP 455
+L+ACSH GL EG+ + + + ++P ++HYGCMVDLLGRAG L+++ + I M +
Sbjct: 394 VLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMK 453
Query: 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515
PD IWSSLL ACR H+NV+LAE + L E D N G ++LL++IYA AGR D+ R+R
Sbjct: 454 PDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVR 513
Query: 516 MKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL----- 570
M +++ GL K G+SL+E G VH F GD +P E+IY L E+ L + G
Sbjct: 514 MIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTS 573
Query: 571 ----------QETSLQ-HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVY 619
+E +L+ H E+LA+AFG+++T +T+ +V NLR+C DCH+ +K+ S++
Sbjct: 574 SVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIV 633
Query: 620 NREIVIRDNGRFHRFQGGQCSCRDYW 645
+RE V+RD RFH F+ G CSC DYW
Sbjct: 634 DREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 197/571 (34%), Positives = 307/571 (53%)
Query: 102 PEIKIWNSIIENQLINGYPQEV-FAIYLYLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVI 159
P + I + I+GY F + + T V + KCG L+ QLFD + R+V+
Sbjct: 244 PAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVV 303
Query: 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219
SWN+MI Y +E + + KM EGV P +V+++ + A L DLE G+ +H
Sbjct: 304 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 363
Query: 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDE 279
E + + S++N L+ MY KC ++ A + G+ + +V W ++ G+ ++ +
Sbjct: 364 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGK--LQSRTLVSWNAMILGFAQNGRPID 421
Query: 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQIS--- 336
A F +M R + T ++ AE A HG+ + + KN
Sbjct: 422 ALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK---WIHGVVMRSCLDKNVFVTTA 478
Query: 337 -IDN------IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
+D I +A +F +SE++V W ++I Y G + A++LF EM++ KP+
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPN 538
Query: 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFI 449
VTF++++SACSH GLV+ G Y+I+ M HYG MVDLLGRAG L E+ +FI
Sbjct: 539 GVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFI 598
Query: 450 TSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509
MP+ P V+++ ++L AC+ H+NV AE A + L E +P + G HVLLANIY A +
Sbjct: 599 MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWE 658
Query: 510 DMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQG 569
+ ++R+ + GL+K G S++E VH F SG +P S++IY L ++ +++ G
Sbjct: 659 KVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAG 718
Query: 570 -LQETSL--------------QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKV 614
+ +T+L H E+LA++FGL++T+ TTI + NLR+C DCH+ K
Sbjct: 719 YVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKY 778
Query: 615 TSQVYNREIVIRDNGRFHRFQGGQCSCRDYW 645
S V REIV+RD RFH F+ G CSC DYW
Sbjct: 779 ISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 198/549 (36%), Positives = 290/549 (52%)
Query: 129 YLVTRTV-LLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187
Y++T + L +KCGK+K LF + D++++N MI YTS G L L ++
Sbjct: 257 YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316
Query: 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247
G T+VSL+ L + +H + +S S+ L +Y K +I A
Sbjct: 317 GARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEIESA 373
Query: 248 QKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307
+KL E E + W ++SGY ++ ++A LF EM + + I+ +L+
Sbjct: 374 RKLFD--ESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILS--- 428
Query: 308 EFKYKSCASIGALYHGIWVH-----------VYIKKNQISI----DNIELAYDLFSEISE 352
+CA +GAL G WVH +Y+ I + +I A LF +++
Sbjct: 429 -----ACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTK 483
Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412
KN W ++I+ Y + G Q+A+++F EM +G P VTF+ +L ACSH GLV EG +
Sbjct: 484 KNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEI 543
Query: 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472
+ Y +P ++HY CMVD+LGRAGHL+ + FI +M I P S+W +LL ACR H+
Sbjct: 544 FNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHK 603
Query: 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532
+ LA + L E DP N G HVLL+NI++ + +R + L K GY+LI
Sbjct: 604 DTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLI 663
Query: 533 EQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ-ETSLQ--------------- 576
E G H FTSGD +P +EIY L ++E +++ G Q ET L
Sbjct: 664 EIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKV 723
Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636
H ERLA+AFGLI+T T IRI+ NLR+C DCH+ K+ S++ R IV+RD RFH F+
Sbjct: 724 HSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKD 783
Query: 637 GQCSCRDYW 645
G CSC DYW
Sbjct: 784 GVCSCGDYW 792
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82380 | PP175_ARATH | No assigned EC number | 0.3450 | 0.9302 | 0.8130 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 645 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-115 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-113 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-41 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-32 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-13 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-115
Identities = 198/594 (33%), Positives = 312/594 (52%), Gaps = 75/594 (12%)
Query: 87 GDLGYAQQI----IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGK 142
GD +++ ++ G ++ + NS+I+ +YL L G
Sbjct: 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQ-------------MYLSL----------GS 338
Query: 143 LKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
E ++F ++ +D +SW MIS Y G+ + L + M + VSPDE+T+ S++SA
Sbjct: 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 203 RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV 262
L DL++G LH E + + N L++MY KC I +A ++ I E DV+
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN--IPEKDVI 456
Query: 263 LWTTLVSGYVKSNERDEARRLFDEM---VERNLISWTLMISGMLNQDAEFKYKSCASIGA 319
WT++++G +N EA F +M ++ N ++ +S +CA IGA
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS------------ACARIGA 504
Query: 320 LYHGIWVHVYIKKNQISIDN---------------IELAYDLFSEISEKNVYLWTSVIAA 364
L G +H ++ + I D + A++ F+ EK+V W ++
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTG 563
Query: 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424
Y G A++LF M E+G PD+VTFI+LL ACS G+V +G ++ Y+I P
Sbjct: 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623
Query: 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484
++HY C+VDLLGRAG L E+ NFI MPI PD ++W +LL ACR H++V+L E A +H+
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683
Query: 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSG 544
E DP + G ++LL N+YA AG+ D+++R+R +R+ GL G S +E G VH F +
Sbjct: 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD 743
Query: 545 DIFNPHSEEIYLMLNEIEMTLQQQGL---QETSLQ------------HRERLAVAFGLIS 589
D +P +EI +L ++ GL + +S+ H ERLA+AFGLI+
Sbjct: 744 DESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLIN 803
Query: 590 TSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643
T I + NL +C +CH+ +K S++ REI +RD +FH F+ G+CSC D
Sbjct: 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 356 bits (914), Expect = e-113
Identities = 177/550 (32%), Positives = 280/550 (50%), Gaps = 42/550 (7%)
Query: 128 LYLVTRTVLLN-KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186
Y++ R +L++ KCG L + +LFD++P R++ SW T+I G YRE L +M
Sbjct: 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246
+G + T V ++ A L G+ LH + ++ + + L+DMY KCG I +
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277
Query: 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306
A+ + + E V W ++++GY +EA L+ EM + + S M+
Sbjct: 278 ARCVFD--GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI--- 332
Query: 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351
+ + + L H H + + +D +E A ++F +
Sbjct: 333 -----RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411
KN+ W ++IA Y G KA+++F M G P+ VTF+A+LSAC + GL ++G++
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH 471
S + IKP+ HY CM++LLGR G L+E+ I P P V++W++LL ACR H
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507
Query: 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531
+N++L A + L P +V+L N+Y +GR + +++ L+ GL +
Sbjct: 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
Query: 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL---------------QETS-L 575
IE H F SGD +P S EIY L+E+ + + G ++ S
Sbjct: 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGR 627
Query: 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635
H E+LA+AFGLI+TSE T ++I + RIC DCH +K + V REIV+RD RFH F+
Sbjct: 628 YHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFK 687
Query: 636 GGQCSCRDYW 645
G+CSC DYW
Sbjct: 688 LGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 9e-41
Identities = 115/369 (31%), Positives = 177/369 (47%), Gaps = 37/369 (10%)
Query: 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVS 198
KCG + +FD++P RD ISWN MIS Y G EGL L M V PD +T+ S
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258
+ISA L D +G+ +H ++ ++ + S+ N L+ MY G GEA+K+ R E
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK- 352
Query: 259 VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318
D V WT ++SGY K+ D+A + M + N+ + I+ +L+ +CA +G
Sbjct: 353 -DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS--------ACACLG 403
Query: 319 ALYHGIWVH-VYIKKNQIS--------ID------NIELAYDLFSEISEKNVYLWTSVIA 363
L G+ +H + +K IS I+ I+ A ++F I EK+V WTS+IA
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463
Query: 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK 423
+ +A+ F +M T KP+ VT IA LSAC+ G + G K+ + ++
Sbjct: 464 GLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG-----KEIHAHVLR 517
Query: 424 PKMQHYG----CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEH 479
+ G ++DL R G + + N S DV W+ LL H +A
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVE 575
Query: 480 AFKHLTETD 488
F + E+
Sbjct: 576 LFNRMVESG 584
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 43/352 (12%)
Query: 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLI 200
G+L +F K+P RD+ SWN ++ Y G + E L L +M GV PD T ++
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
Query: 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD 260
+ DL G+ +H + ++ ++N L+ MY KCG + A+ + R + D
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR--MPRRD 252
Query: 261 VVLWTTLVSGYVKSNERDEARRLFDEM----VERNLISWTLMISGMLNQDAEFKYKSCAS 316
+ W ++SGY ++ E E LF M V+ +L++ T +IS +C
Sbjct: 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS------------ACEL 300
Query: 317 IGALYHGIWVHVYIKKN----QISIDN--IEL---------AYDLFSEISEKNVYLWTSV 361
+G G +H Y+ K +S+ N I++ A +FS + K+ WT++
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF--LSKKSRV 419
I+ Y G KA++ + ME+ PD++T ++LSAC+ G +D G L+++ +
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 420 --YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469
Y + ++++ + ++++ ++P DV W+S++ R
Sbjct: 421 ISYVVVAN-----ALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 2e-20
Identities = 81/323 (25%), Positives = 141/323 (43%), Gaps = 54/323 (16%)
Query: 172 GMYREGLGLLSKMGAEGVSPDEV---TMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228
G +RE L L E P + T +L+ A L+ + K ++ +E S +
Sbjct: 101 GRHREALELFE--ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158
Query: 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288
++N ++ M+ KCG + +A++L E+ E ++ W T++ G V + EA LF EM
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFD--EMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------- 338
E + ML ++ A +G+ G +H + K + D
Sbjct: 217 EDGSDAEPRTFVVML--------RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 339 -----NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
+IE A +F + EK W S++A YA+ G++++A+ L+ EM ++G DQ TF
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 394 IALLSACS-----------HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442
++ S H GL+ G+ V N +VDL + G +
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPL----DIVANT--------ALVDLYSKWGRM 376
Query: 443 EESANFITSMPIPPDVSIWSSLL 465
E++ N MP +S W++L+
Sbjct: 377 EDARNVFDRMPRKNLIS-WNALI 398
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 72/320 (22%), Positives = 127/320 (39%), Gaps = 39/320 (12%)
Query: 170 SMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229
S G + L LL M V DE V+L R +E G + S +
Sbjct: 63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122
Query: 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE 289
L N ++ M+ + G++ A + G+ + E D+ W LV GY K+ DEA L+ M+
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGK--MPERDLFSWNVLVGGYAKAGYFDEALCLYHRML- 179
Query: 290 RNLISWTLMISGMLNQDAEFK--YKSCASIGALYHGIWVHVYIKKNQISID--------- 338
W +G+ F ++C I L G VH ++ + +D
Sbjct: 180 -----W----AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVT 392
++ A +F + ++ W ++I+ Y G + ++LF M E PD +T
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRAGHLEESANF 448
+++SAC L DE L ++ Y +K + ++ + G E+
Sbjct: 291 ITSVISAC--ELLGDER---LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 449 ITSMPIPPDVSIWSSLLRAC 468
+ M VS W++++
Sbjct: 346 FSRMETKDAVS-WTAMISGY 364
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 577 HRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRF 634
H E+ A+A+GL+ TT I R+CGDCH F + ++ REI++RD RFH F
Sbjct: 63 HAEKQALAYGLL-----TTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402
+V + ++I Y G ++A+ LF EM++ G KP+ T+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA 202
DV+++NT+I Y G E L L ++M G+ P+ T LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 9/194 (4%)
Query: 340 IELAYDLFSEIS----EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395
++ +++F E+ E NV+ + ++I A AG KA + M KPD+V F A
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 396 LLSACSHGGLVDEGYDFLSK-KSRVYNIKPKMQHYGCMVDLLGRAGHLE---ESANFITS 451
L+SAC G VD +D L++ K+ + I P G ++ AG ++ E I
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV-LLANIYAKAGRLDD 510
I +++ + +C + A + + + D L ++ AG LD
Sbjct: 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 511 MSRIRMKLRDMGLK 524
I R G+K
Sbjct: 668 AFEILQDARKQGIK 681
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVER----NLISWTLMISGM 302
DVV + TL+ GY K + +EA +LF+EM +R N+ +++++I G+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 81/402 (20%), Positives = 164/402 (40%), Gaps = 65/402 (16%)
Query: 67 TNLMRDPQISTQVFEFLV--------FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLING 118
L+R+P +ST F L+ G L + + G + + K++ ++I +G
Sbjct: 429 AKLIRNPTLST--FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 119 YPQEVFAIYLYLV---------TRTVLLNKCGKLKEVCQLF---------DKLPNRDVIS 160
+F ++ +V T L++ C + +V + F + P+R V
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV-- 544
Query: 161 WNTMISCYTSMGMYREGLGLLSKMGAEG--VSPDEVTMVSLISARTKLRDLEMGKNLHLF 218
+N +IS G +L++M AE + PD +T+ +L+ A ++ K ++
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDV----VLWTTLVSGYVK 273
+ E +K G+ Y + + C + G+ L Y+ + + V V ++ LV
Sbjct: 605 IHEYNIK--GTPEVYTIAVNS-CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN 333
+ + D+A + + ++ + T+ S ++ +C++ + ++ IK
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMG--------ACSNAKNWKKALELYEDIK-- 711
Query: 334 QISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393
+ L +S N ++I A KA+++ EM+ G P+ +T+
Sbjct: 712 ---------SIKLRPTVSTMN-----ALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757
Query: 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435
LL A D G D LS +++ IKP + C+ L
Sbjct: 758 SILLVASERKDDADVGLDLLS-QAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE---GYDFL 413
L+T++I+ A +G ++F EM G + + TF AL+ C+ G V + Y +
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 414 SKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-----PIPPDVSIWSSLLRAC 468
K N+KP + ++ G++G ++ + + + M PI PD +L++AC
Sbjct: 534 RSK----NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 469 RCHQNVKLAEHAFKHLTETD 488
V A+ ++ + E +
Sbjct: 590 ANAGQVDRAKEVYQMIHEYN 609
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440
++E G K D + L+S C+ G VD ++ + ++ + +G ++D RAG
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAG 521
Query: 441 HLEE---SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT----ETDPLNDG 493
+ + + + S + PD ++++L+ AC + AF L ET P+ D
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISAC---GQSGAVDRAFDVLAEMKAETHPI-DP 577
Query: 494 AHVL---LANIYAKAGRLDDMSRIRMKLRDMGLK 524
H+ L A AG++D + + + +K
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193
+++NT+I G E L L +M G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
V + +L+SGY K+ + +EA LF EM E+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 260 DVVLWTTLVSGYVKSNERDEARRLFDEMV 288
DVV + TL+ G ++ DEA L DEM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189
+++N++IS Y G E L L +M +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNL 292
V + TL+ G K+ +EA LF EM ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 6e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389
+ ++I AG ++A++LF EM+E G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 645 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.51 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.48 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.4 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.36 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.29 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.25 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.22 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.19 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.09 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.05 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.02 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.98 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.96 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.96 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.95 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.93 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.91 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.88 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.85 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.81 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.79 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.65 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.64 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.63 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.62 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.52 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.47 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.4 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.4 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.39 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.34 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.32 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.25 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.2 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.12 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.09 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.08 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.08 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.08 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.06 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.98 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.97 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.82 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.76 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.73 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.46 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.45 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.44 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.4 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.39 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.35 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.26 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.25 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.2 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.15 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.14 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.12 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.08 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.07 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.05 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.97 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.93 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.87 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.84 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.82 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.81 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.78 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.77 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.73 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.71 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.71 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.71 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.61 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.52 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.5 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.44 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.22 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.16 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.0 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.98 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.96 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.96 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.94 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.92 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.9 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.87 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.87 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.85 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.77 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.35 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.21 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.87 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.65 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.23 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.85 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.63 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.42 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.28 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.19 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.56 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.5 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.48 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.97 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 91.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.35 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.9 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.84 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.82 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.79 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.79 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.52 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.15 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.11 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.8 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.71 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.6 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.26 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.06 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.95 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.33 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.04 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.02 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.68 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.17 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.99 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 86.61 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.56 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.47 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 86.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.99 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.63 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.36 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.33 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.19 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.86 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.38 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.15 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 83.91 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.76 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.57 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.5 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.45 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.28 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.47 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 80.97 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.12 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-119 Score=1023.38 Aligned_cols=606 Identities=34% Similarity=0.611 Sum_probs=588.6
Q ss_pred hhccCCchhHHhhhhccccCCChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHH
Q 048812 19 LVRLGLVPKMRISRKFANVCPVSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95 (645)
Q Consensus 19 ~~~~~~~~~m~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 95 (645)
-.++.+|..|... |+.||.+||+.++++| +++..+.++|..+++.|+.||+.++|+||++|+++|++++|.++
T Consensus 169 ~~A~~~f~~M~~~----g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 169 DEALCLYHRMLWA----GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred HHHHHHHHHHHHc----CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 3457778888876 9999999999999998 67899999999999999999999999999999999999999999
Q ss_pred HhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------------------------------------
Q 048812 96 IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT----------------------------------------- 134 (645)
Q Consensus 96 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------------------------- 134 (645)
|++|++||+++||+||.+|++.|++++|+++|++|...+
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 999999999999999999999999999999999997721
Q ss_pred ------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 135 ------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 135 ------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++ +.++|+++||+||.+|+++|+.++|+++|++|.
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~--m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN--IPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh--CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 778999999999999999999999999999997
Q ss_pred ---cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC---------------cHHHHHHHHhhc
Q 048812 289 ---ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEI 350 (645)
Q Consensus 289 ---~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~---------------~~~~A~~~f~~~ 350 (645)
.||.+||+++| .+|+..|.++.|+++|..+.+.|+..+ ++++|.++|+.+
T Consensus 483 ~~~~pd~~t~~~lL------------~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 483 LTLKPNSVTLIAAL------------SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred hCCCCCHhHHHHHH------------HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 79999999999 889999999999999999999998765 899999999999
Q ss_pred CcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 048812 351 SEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430 (645)
Q Consensus 351 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (645)
.+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|++|.+++|+.|+..+|+
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
+|+++|++.|++++|.+++++|+++||..+|++|+++|..+|+.+.|+.+.+++++++|+++..|+.|+++|++.|+|++
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc--------------hhh-h
Q 048812 511 MSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ--------------ETS-L 575 (645)
Q Consensus 511 a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~--------------~~~-~ 575 (645)
|.++++.|+++|++|+||+|||++++++|.|.+||++||+.++||..|++|..+|++.||+ ++. +
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~ 789 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFC 789 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 234 8
Q ss_pred hhhHHHHHHhhhccCCCCCeEEEEccccccCCcchhHHHhhhccCeeEEEecCCccccccCccccCCC
Q 048812 576 QHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQGGQCSCRD 643 (645)
Q Consensus 576 ~~se~la~~~~l~~~~~~~~~~~~~n~~~c~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~~g~csc~~ 643 (645)
+||||||+|||||++|+|.||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||||
T Consensus 790 ~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 790 GHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-112 Score=946.71 Aligned_cols=569 Identities=32% Similarity=0.569 Sum_probs=538.2
Q ss_pred ChhhHHHHHhhc---CCHHHHHHHHHHHHHhC-CCCChhhhhhHHHHHHhcCChHHHHHHHhhCC----CCCcccHHHHH
Q 048812 40 VSLDVIMVERSC---SSIDEFERIHSHLITTN-LMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD----EPEIKIWNSII 111 (645)
Q Consensus 40 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 111 (645)
+..+++.++..+ +++.+|.+++..|.+.+ +.||..+|+.++.+|++.++++.|.+++..|. .||..+||.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 444666666553 67777888888777654 66778888888888888888888888877764 57777888888
Q ss_pred HHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 048812 112 ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191 (645)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (645)
.+| +++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 166 ~~y-----------------------~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 166 LMH-----------------------VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHH-----------------------hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 777 678899999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHH
Q 048812 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271 (645)
Q Consensus 192 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~ 271 (645)
|..||+.++.+|+..|+.+.+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++ +..+|+++||+||.+|
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~--m~~~~~vt~n~li~~y 300 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG--MPEKTTVAWNSMLAGY 300 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh--CCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 7789999999999999
Q ss_pred HhcCCHHHHHHHHHhcc----cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC---------
Q 048812 272 VKSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID--------- 338 (645)
Q Consensus 272 ~~~g~~~~A~~~~~~m~----~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~--------- 338 (645)
++.|+.++|+++|++|. .||..||++++ .+|+..|.++.|+++|..+.+.|+..+
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll------------~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI------------RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH------------HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 99999999999999996 78999999999 778888999999999999999998766
Q ss_pred ------cHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048812 339 ------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412 (645)
Q Consensus 339 ------~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 412 (645)
++++|.++|+.|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
|+.|.+++|+.|+..+|++||++|++.|++++|.+++++|+++||..+|++|+.+|+.+|+++.|+.+++++++++|++.
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc-
Q 048812 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ- 571 (645)
Q Consensus 493 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~- 571 (645)
.+|+.|+++|++.|+|++|.++++.|+++|++|.||+|||++++.+|.|.+||..||+.++|+..|.+|..+|++.||+
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------hhh-hhhhHHHHHHhhhccCCCCCeEEEEccccccCCcchhHHHhhhccCeeEEEecCCccccccC
Q 048812 572 --------------ETS-LQHRERLAVAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQG 636 (645)
Q Consensus 572 --------------~~~-~~~se~la~~~~l~~~~~~~~~~~~~n~~~c~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~~ 636 (645)
+.. ++||||||+|||||++|||.||||+||||+|+|||+|+|+||++++|+|||||.+|||||+|
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~ 688 (697)
T PLN03081 609 EENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKL 688 (697)
T ss_pred CcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCC
Confidence 234 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 048812 637 GQCSCRDYW 645 (645)
Q Consensus 637 g~csc~~~~ 645 (645)
|+|||||||
T Consensus 689 g~csc~d~w 697 (697)
T PLN03081 689 GKCSCGDYW 697 (697)
T ss_pred CcccccccC
Confidence 999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-70 Score=620.66 Aligned_cols=582 Identities=25% Similarity=0.353 Sum_probs=506.4
Q ss_pred ccCCchhHHhhhhccccCCChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHh
Q 048812 21 RLGLVPKMRISRKFANVCPVSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97 (645)
Q Consensus 21 ~~~~~~~m~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~ 97 (645)
++.+|+.|... |+.|+..+|..++++| +.+..|.++|+.+.+.|..+++.++|+|+++|+++|+++.|.++|+
T Consensus 70 A~~l~~~m~~~----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~ 145 (857)
T PLN03077 70 ALKLLESMQEL----RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145 (857)
T ss_pred HHHHHHHHHhc----CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHh
Confidence 45566666665 8899999999999998 6799999999999999999999999999999999999999999999
Q ss_pred hCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-------------------------------------------
Q 048812 98 QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT------------------------------------------- 134 (645)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------------------------------- 134 (645)
+|++||+++||++|.+|++.|++++|+++|++|...+
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 9999999999999999999999999999999997511
Q ss_pred ----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChH
Q 048812 135 ----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210 (645)
Q Consensus 135 ----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (645)
.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc--
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV-- 288 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 288 (645)
.|.++|..+.+.|+.||..+||+||++|+++|++++|.++|++ +..||+++||+||.+|++.|++++|+++|++|.
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~--m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR--METKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh--CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 778999999999999999999999999999996
Q ss_pred --cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC---------------cHHHHHHHHhhcC
Q 048812 289 --ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID---------------NIELAYDLFSEIS 351 (645)
Q Consensus 289 --~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~---------------~~~~A~~~f~~~~ 351 (645)
.||..||++++ .+|+..|.++.|.++|..+.+.|+..+ ++++|.++|++|.
T Consensus 384 g~~Pd~~t~~~ll------------~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 384 NVSPDEITIASVL------------SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred CCCCCceeHHHHH------------HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 68999999999 788888999999999999999998765 8999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+.+|.+|++.|.++.|.+++..+. +.|+.|+..++++
T Consensus 452 ~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~na 529 (857)
T PLN03077 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNA 529 (857)
T ss_pred CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechH
Confidence 99999999999999999999999999999986 599999999999999999999999999999999 6899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHcCCchH
Q 048812 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
||++|+++|++++|.++|+++ .||..+|+++|.+|.++|+.++|.++|++|.+.+ ..|..+|..++.+|++.|++++
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 999999999999999999999 7999999999999999999999999999999854 2356899999999999999999
Q ss_pred HHHHHHHHH-hCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH----------------HcCcchh
Q 048812 511 MSRIRMKLR-DMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ----------------QQGLQET 573 (645)
Q Consensus 511 a~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~----------------~~g~~~~ 573 (645)
|.++|+.|+ +.|+.|+...-.. .+......++.++++. ++++|. ..|..+.
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~eA~~----~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTEAYN----FINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 999999998 6787765421110 1111223455666663 333342 1111111
Q ss_pred hhhhhHHHH-HHhhhccCCCCCeEEEEccccccCCcchhHHHhhhccCeeEEEe-------cCCccccccCcccc
Q 048812 574 SLQHRERLA-VAFGLISTSEKTTIRIVNNLRICGDCHSFMKVTSQVYNREIVIR-------DNGRFHRFQGGQCS 640 (645)
Q Consensus 574 ~~~~se~la-~~~~l~~~~~~~~~~~~~n~~~c~~~~~~~~~~s~~~~~~i~~r-------d~~~~h~~~~g~cs 640 (645)
.|+.+ ..+.+.+..++..+.+.+-....|+..++.++...|..+.+-.. -.+..|-|.-|--|
T Consensus 676 ----~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 676 ----GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred ----HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 11111 22445555455444344445678999999999988877743211 13567888666544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-59 Score=520.38 Aligned_cols=475 Identities=16% Similarity=0.214 Sum_probs=429.4
Q ss_pred CChhhHHHHHhhc---CCHHHHHHHHHHHHHhCC-CCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHH
Q 048812 39 PVSLDVIMVERSC---SSIDEFERIHSHLITTNL-MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQ 114 (645)
Q Consensus 39 p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 114 (645)
++...|..++..+ |++++|.++++.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+||.+|.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4444555555544 899999999999999996 578888999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHhhcC------------chhhccCChHHHHHHHccCC----CCCcchHHHHHHHHHhcCChHHHH
Q 048812 115 LINGYPQEVFAIYLYLVTRT------------VLLNKCGKLKEVCQLFDKLP----NRDVISWNTMISCYTSMGMYREGL 178 (645)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~------------~~~~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~~~~~g~~~~A~ 178 (645)
++.|++++|+++|+.|.+.+ .+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999854 78999999999999999998 589999999999999999999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCC
Q 048812 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE--STMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI 256 (645)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 256 (645)
++|++|.+.|+.||..||+.+|.+|++.|++++|.++|.+|.+ .|+.||..+|++||++|+++|++++|.++|+.|..
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 67899999999999999999999999999999654
Q ss_pred C--CCChhhHHHHHHHHHhcCCHHHHHHHHHhcc----cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHH
Q 048812 257 D--EVDVVLWTTLVSGYVKSNERDEARRLFDEMV----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330 (645)
Q Consensus 257 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~ 330 (645)
. .|+..+||++|.+|++.|++++|.++|++|. .||.+||++++ .+|...|.++.+.+++..+
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI------------~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV------------DVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH------------HHHHhCCCHHHHHHHHHHH
Confidence 4 4688999999999999999999999999998 68999999999 4555567889999999999
Q ss_pred HHcCCCCC---------------cHHHHHHHHhhcC----cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048812 331 KKNQISID---------------NIELAYDLFSEIS----EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391 (645)
Q Consensus 331 ~~~~~~~~---------------~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 391 (645)
.+.|+..+ ++++|.++|+.|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99888776 8999999999995 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH----HcC-------------------CHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG----RAG-------------------HLEESANF 448 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~ 448 (645)
||+.++.+|++.|++++|.++|..|. +.|+.||..+|++|++++. +++ ..++|..+
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 99999999999999999999999999 6799999999999998743 222 24679999
Q ss_pred HHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 449 ITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 449 ~~~m---~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
|++| ++.||..||++++.++.+.+..+.+..+++.+.. -.+.+..+|.+|++.+.+. .++|..++++|.+.|+.
T Consensus 835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 9999 7999999999999888888888988888887754 3355678999999988432 36899999999999998
Q ss_pred ccCc
Q 048812 525 KQLG 528 (645)
Q Consensus 525 ~~~~ 528 (645)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 7653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=514.42 Aligned_cols=442 Identities=19% Similarity=0.337 Sum_probs=388.4
Q ss_pred hhccCCchhHHhhhhccccCCChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHH
Q 048812 19 LVRLGLVPKMRISRKFANVCPVSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQI 95 (645)
Q Consensus 19 ~~~~~~~~~m~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 95 (645)
..++.+|..|... .+..||..+|+.++.+| ++++.+.++|..+.+.|+.||+.++|.|+++|+++|+++.|.++
T Consensus 104 ~~Al~~f~~m~~~---~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 104 REALELFEILEAG---CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence 3456777777754 24679999999999998 78999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------------------------------------
Q 048812 96 IRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT----------------------------------------- 134 (645)
Q Consensus 96 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------------------------------- 134 (645)
|++|++||+++||++|.+|++.|++++|+++|++|...+
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 999999999999999999999999999999999996521
Q ss_pred ------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 135 ------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 135 ------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
.+|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++.|.++|..|.+.|++||..++|+||++|+++|++++|.++|++ +.+||+++||+||.+|++.|+.++|+++|++|.
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~--m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR--MPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh--CCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 678999999999999999999999999999998
Q ss_pred cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 289 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
+.+. .||.+||+++|.+|++.
T Consensus 419 ~~g~-----------------------------------------------------------~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 419 AEGV-----------------------------------------------------------APNHVTFLAVLSACRYS 439 (697)
T ss_pred HhCC-----------------------------------------------------------CCCHHHHHHHHHHHhcC
Confidence 6554 58999999999999999
Q ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 048812 369 GHAQKAIDLFLEMEE-TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447 (645)
Q Consensus 369 g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 447 (645)
|+.++|.++|++|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999975 689999999999999999999999999988765 578999999999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCchhHHHHHH-------H---H-HHcCCchHHH
Q 048812 448 FITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDP--LNDGAHVLLAN-------I---Y-AKAGRLDDMS 512 (645)
Q Consensus 448 ~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p--~~~~~y~~l~~-------~---~-~~~g~~~~a~ 512 (645)
+++++ +..|+ ..+|..|++.|.+.|++++|.+++++|.+.+- .+..+|+.+.+ . . ....-++...
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 99887 56664 67899999999999999999999999988542 12111211100 0 0 0001134567
Q ss_pred HHHHHHHhCCCcccCc
Q 048812 513 RIRMKLRDMGLKKQLG 528 (645)
Q Consensus 513 ~~~~~m~~~~~~~~~~ 528 (645)
++..+|++.|..++..
T Consensus 596 ~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 596 ELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 7888999999776554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=508.37 Aligned_cols=497 Identities=18% Similarity=0.225 Sum_probs=410.9
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHH
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL 149 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~ 149 (645)
.++...+..+++.++++|++++|.++|++|+.++...|+.++.+..-. .+.+.|.+++|..+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~------------------~~~~~g~~~eAl~l 428 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK------------------ACKKQRAVKEAFRF 428 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH------------------HHHHCCCHHHHHHH
Confidence 567788999999999999999999999999987777666554432111 01456778888888
Q ss_pred HccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh
Q 048812 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229 (645)
Q Consensus 150 f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 229 (645)
|+.|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..
T Consensus 429 f~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhcc------cCCchhHHHHHHh
Q 048812 230 LLNYLVDMYFKCGKIGEAQKLLGRYEID--EVDVVLWTTLVSGYVKSNERDEARRLFDEMV------ERNLISWTLMISG 301 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~t~~~ll~~ 301 (645)
+|++||++|++.|++++|.++|+.|... .||.++||.||.+|++.|++++|.++|++|. .||.++|+++|.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 9999999999999999999999997433 5899999999999999999999999999995 5899999999998
Q ss_pred hhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc----CChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 302 MLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE----KNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
|++.| ++++|.++|+.|.+ |+..+||++|.+|++.|++++|+++
T Consensus 589 y~k~G--------------------------------~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 589 CANAG--------------------------------QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHCC--------------------------------CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 88887 78888888888865 6779999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CC
Q 048812 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM---PI 454 (645)
Q Consensus 378 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~ 454 (645)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++||++|+++|++++|.++|++| +.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999 6799999999999999999999999999999998 57
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEE
Q 048812 455 PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIE 533 (645)
Q Consensus 455 ~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~ 533 (645)
.||..+|++||.+|++.|++++|.++|++|.+.+ ..+..+|..|+.+|++.|++++|.+++++|.+.|+.++.......
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 8999999999999999999999999999998854 335689999999999999999999999999999998775322111
Q ss_pred E-------------CCEEEEEEeCCC--CCcChHHHHHHHHHHHHHHHHcCcchhh---------------hhhhHHHHH
Q 048812 534 Q-------------GGFVHKFTSGDI--FNPHSEEIYLMLNEIEMTLQQQGLQETS---------------LQHRERLAV 583 (645)
Q Consensus 534 ~-------------~~~~~~f~~~~~--~~~~~~~~~~~l~~l~~~m~~~g~~~~~---------------~~~se~la~ 583 (645)
+ ...+..|-.+.. ......++. .++++|.+.|+.++. ....+.|-.
T Consensus 796 Iglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al----~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 796 TGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL----MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH----HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHH
Confidence 1 112222322211 111233344 789999999998332 122233334
Q ss_pred HhhhccCCCCCeE--EEEccccccCC-cchhHHHhhhccCeeEE
Q 048812 584 AFGLISTSEKTTI--RIVNNLRICGD-CHSFMKVTSQVYNREIV 624 (645)
Q Consensus 584 ~~~l~~~~~~~~~--~~~~n~~~c~~-~~~~~~~~s~~~~~~i~ 624 (645)
.+++.+.+++... .+++. |+. -+.|+.+...+..+.|+
T Consensus 872 ~m~~~~~~~~~~~y~~Li~g---~~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 872 NLGISADSQKQSNLSTLVDG---FGEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HhccCCCCcchhhhHHHHHh---hccChHHHHHHHHHHHHcCCC
Confidence 4555555544321 12222 222 24788888888877553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=261.29 Aligned_cols=461 Identities=11% Similarity=0.015 Sum_probs=307.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
++.+.|...+..+.+... ........++..|.+.|++++|..+++++. +++..+|+.+...+...|++++|++.|+
T Consensus 411 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred CChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 677777777777766552 234455566777777788888887777764 3456677777777777888888888887
Q ss_pred HHhhcC-----------chhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh
Q 048812 129 YLVTRT-----------VLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV 194 (645)
Q Consensus 129 ~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (645)
++...+ .++...|++++|.+.|+++.+ .+..+++.+...+.+.|++++|+..|+++...+ +.+..
T Consensus 490 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 568 (899)
T TIGR02917 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIE 568 (899)
T ss_pred HHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchh
Confidence 776533 455667777777777777642 355677777777777777777777777776653 23445
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHh
Q 048812 195 TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVK 273 (645)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~ 273 (645)
.+..+...+...|+++.|.+++..+.+.. +.+..++..+...|.+.|++++|...|+.+....| +...|..+...+.+
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 66667777777777777777777776554 55666777777777777777777777776433333 55667777777777
Q ss_pred cCCHHHHHHHHHhccc--C-CchhHHHHHHhhhccCCchhh-hhhccccch-hhHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 048812 274 SNERDEARRLFDEMVE--R-NLISWTLMISGMLNQDAEFKY-KSCASIGAL-YHGIWVHVYIKKNQISIDNIELAYDLFS 348 (645)
Q Consensus 274 ~g~~~~A~~~~~~m~~--~-~~~t~~~ll~~~~~~~~~~~~-~a~~~~~~l-~~g~~i~~~~~~~~~~~~~~~~A~~~f~ 348 (645)
.|++++|...|+++.+ | +..++..+...+.+.|+.-.- ..+...... .....+...+.......+++++|...|.
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777652 2 345566666666555411000 000000000 0000111111122223346777777777
Q ss_pred hcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 048812 349 EISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426 (645)
Q Consensus 349 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 426 (645)
.+.. |+..++..++..+.+.|++++|.+.++++.+. .+.+...+..+...|...|+.++|.++|+++.+. -.++.
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 804 (899)
T TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNA 804 (899)
T ss_pred HHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCH
Confidence 6543 44566667777788888888888888877765 3345667777777777788888888888877742 23356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
..++.+..++...|+ .+|.+++++. ...| +..++..+...+...|++++|...++++++.+|.++.++..++.+|.+
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 777777888888888 7777777765 3333 455667777777888888888888888888888777888888888888
Q ss_pred cCCchHHHHHHHHHH
Q 048812 505 AGRLDDMSRIRMKLR 519 (645)
Q Consensus 505 ~g~~~~a~~~~~~m~ 519 (645)
.|++++|.+++++|.
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 888888888887774
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-25 Score=258.81 Aligned_cols=452 Identities=12% Similarity=0.047 Sum_probs=375.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHH
Q 048812 51 CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIY 127 (645)
Q Consensus 51 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 127 (645)
.++.++|.+.+..+.+.. +.+...+..+...|...|++++|.+.|+++.. .+...+..++..+.+.|++++|+.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 489999999999998765 44677888899999999999999999998652 33556778889999999999999999
Q ss_pred HHHhhcC-----------chhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 048812 128 LYLVTRT-----------VLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193 (645)
Q Consensus 128 ~~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (645)
+.+.... ..|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+.
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 9998743 677789999999999998753 456678889999999999999999999998864 3466
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHH
Q 048812 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYV 272 (645)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~ 272 (645)
.++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+....| +..+|..+...|.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 788889999999999999999999998876 56777888999999999999999999998644444 6789999999999
Q ss_pred hcCCHHHHHHHHHhccc--C-CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHH--------------HHHcCC
Q 048812 273 KSNERDEARRLFDEMVE--R-NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVY--------------IKKNQI 335 (645)
Q Consensus 273 ~~g~~~~A~~~~~~m~~--~-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~--------------~~~~~~ 335 (645)
+.|++++|...|+++.+ | +...+..+...|.+.|+ .+.+...... +.....
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN------------YAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999873 3 44566677777766652 2222222222 222223
Q ss_pred CCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 048812 336 SIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDF 412 (645)
Q Consensus 336 ~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 412 (645)
..+++++|.++++.+.. .+...|..+...+...|++++|++.|+++... .|+..++..+..++...|+.++|.+.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 34588899999888764 45677888889999999999999999999885 45657788888999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
++.+.+. ...+...+..+...|.+.|++++|.+.|+++ ..+++..+++.+...+...|+ ++|+..++++++..|+
T Consensus 759 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 9998853 2346788899999999999999999999987 334577889999999999999 8899999999999999
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 491 ~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++..+..++.+|...|++++|.++++++.+.+
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=203.63 Aligned_cols=98 Identities=51% Similarity=0.840 Sum_probs=79.6
Q ss_pred ceeEEEECCEEEEEEeCCCCCcChHHHHHHHH-HHHHHHHHcCcc--------------hhh-hhhhHHHHHHhhhccCC
Q 048812 528 GYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLN-EIEMTLQQQGLQ--------------ETS-LQHRERLAVAFGLISTS 591 (645)
Q Consensus 528 ~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~-~l~~~m~~~g~~--------------~~~-~~~se~la~~~~l~~~~ 591 (645)
|+||+++ |.|++||.+||+.+.+...+. .....++..|+. ++. ++||||||+||||+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~- 76 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT- 76 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce-
Confidence 7899876 999999999999944443222 122233333332 124 8999999999999998
Q ss_pred CCCeEEEEccc-cccCCcchhHHHhhhccCeeEEEecCCcccccc
Q 048812 592 EKTTIRIVNNL-RICGDCHSFMKVTSQVYNREIVIRDNGRFHRFQ 635 (645)
Q Consensus 592 ~~~~~~~~~n~-~~c~~~~~~~~~~s~~~~~~i~~rd~~~~h~~~ 635 (645)
+|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 77 -----~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 -----RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred -----eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 899999 999999999999999999999999999999997
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=185.46 Aligned_cols=306 Identities=12% Similarity=0.068 Sum_probs=247.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHH
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS---GSLLNYLVDMYF 239 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~ 239 (645)
.....+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..++..+++.+..++ ..++..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33445678899999999999999873 23455788888899999999999999999887642222 356788899999
Q ss_pred HcCCHHHHHHHHcccCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhcccc
Q 048812 240 KCGKIGEAQKLLGRYEIDE-VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIG 318 (645)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~ 318 (645)
+.|++++|..+|+++.... .+..+++.++..+.+.|++++|.+.|+.+.+.+......
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------------- 177 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--------------------- 177 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH---------------------
Confidence 9999999999999964433 467889999999999999999999999886433211000
Q ss_pred chhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048812 319 ALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS 398 (645)
Q Consensus 319 ~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 398 (645)
.....|..+...+.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 178 ----------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~ 222 (389)
T PRK11788 178 ----------------------------------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGD 222 (389)
T ss_pred ----------------------------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHH
Confidence 012235677888899999999999999998753 223567778888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChH
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~ 475 (645)
.+...|++++|.++|+++.+. .|+ ...++.++.+|.+.|++++|.+.++++ ...|+...+..+...+...|+++
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHH
Confidence 999999999999999999852 444 467889999999999999999999987 55688777788999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHH---cCCchHHHHHHHHHHhCCCcccCce
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANIYAK---AGRLDDMSRIRMKLRDMGLKKQLGY 529 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 529 (645)
+|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.+
T Consensus 300 ~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 300 AAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999874 56666666554 5699999999999999999988874
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-17 Score=195.12 Aligned_cols=462 Identities=14% Similarity=0.058 Sum_probs=289.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhhh-hhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHH
Q 048812 51 CSSIDEFERIHSHLITTNLMRDPQIS-TQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAI 126 (645)
Q Consensus 51 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 126 (645)
.++.++|.+.+..+++.. +++.... ..+.......|+.++|++.|+++. +.+...+..+...+...|++++|+..
T Consensus 125 ~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 488999999999988664 3343221 112222334589999999999876 33566788888999999999999999
Q ss_pred HHHHhhcCc-------h------------------------hhccCChHHHHHHHccCC----CCCcchHHHHHHHHHhc
Q 048812 127 YLYLVTRTV-------L------------------------LNKCGKLKEVCQLFDKLP----NRDVISWNTMISCYTSM 171 (645)
Q Consensus 127 ~~~m~~~~~-------~------------------------~~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~~~~~ 171 (645)
|+++..... . +......+.|...+.+.. .|+.. .......+...
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~ 282 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDS 282 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHC
Confidence 998865320 0 001111223333333221 11111 12334566778
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch-h------------HHHHHHHHH
Q 048812 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG-S------------LLNYLVDMY 238 (645)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~------------~~~~li~~y 238 (645)
|++++|+..|++..+.. +-+...+..+..++.+.|++++|...+..+++....... . ....+...+
T Consensus 283 g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 89999999998888753 225667888888888889999999999888876532211 1 112335677
Q ss_pred HHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhccc--CC-chhHHHHHHhhhccCCchhhhhh
Q 048812 239 FKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVE--RN-LISWTLMISGMLNQDAEFKYKSC 314 (645)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~t~~~ll~~~~~~~~~~~~~a~ 314 (645)
.+.|++++|...|++.....| +...+..+...+...|++++|++.|++..+ |+ ...+..+...|.+.+.+-....+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888999999999888544444 566777888888899999999999988873 33 23343343334322110000111
Q ss_pred ccccchh--------hH--HHHHHHHHHcCCCCCcHHHHHHHHhhcCc--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048812 315 ASIGALY--------HG--IWVHVYIKKNQISIDNIELAYDLFSEISE--K-NVYLWTSVIAAYAMAGHAQKAIDLFLEM 381 (645)
Q Consensus 315 ~~~~~l~--------~g--~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 381 (645)
..+.... .. ...+..........++.++|.+.|++... | +...+..+...|.+.|++++|+..|++.
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1100000 00 00111122222345688999999987754 3 4567788899999999999999999998
Q ss_pred HHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHh
Q 048812 382 EETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM---------QHYGCMVDLLGRAGHLEESANFITS 451 (645)
Q Consensus 382 ~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~~ 451 (645)
.+. .| +...+..+...+...++.++|...++.+... ...++. ..+..+.+.+...|+.++|.++++.
T Consensus 522 l~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 522 AQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 874 34 3444444444566778888888887765421 111111 1123445566677777777777774
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 452 m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
-| ++...+..+...+...|+.++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+
T Consensus 599 ~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 599 QP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 33 34445566666677777777777777777777777777777777777777777777777776544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=174.87 Aligned_cols=370 Identities=15% Similarity=0.146 Sum_probs=277.7
Q ss_pred hhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhh
Q 048812 73 PQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLN 138 (645)
Q Consensus 73 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~ 138 (645)
..+|..+.+.+-..|++++|..+++.+. +..+..|-.+..++...|+.+.|.+.|...++.+ .+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 3456667777777788888888777664 2345677777778888888888887777777754 3344
Q ss_pred ccCChHHHHHHHccCC--CCC-cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChHHHHH
Q 048812 139 KCGKLKEVCQLFDKLP--NRD-VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLEMGKN 214 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~--~~~-~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~ 214 (645)
..|++++|...+-+.. +|. .++|+.|.-.+..+|+...|+..|++.... .|+- ..|..|-..+...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 4566666666555433 232 456777777777777777777777776653 4443 366667777777777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCch
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 293 (645)
.+..+.... +....++..+...|-..|.+|-|...+++.....|+ ...|+.|..++-..|+..+|.+.+.+...-.
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-- 350 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-- 350 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--
Confidence 766665443 334555666666777777777777777764444453 4567777777777777777777766554211
Q ss_pred hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHH
Q 048812 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373 (645)
Q Consensus 294 t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 373 (645)
..-..+.+.|...|...|.+++
T Consensus 351 ----------------------------------------------------------p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 351 ----------------------------------------------------------PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred ----------------------------------------------------------CccHHHHHHHHHHHHHhccchH
Confidence 1123567789999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 048812 374 AIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITS 451 (645)
Q Consensus 374 A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (645)
|..+|....+ +.|. ...++.|...|-..|++++|+..+++..+ |+|+ ...|+.|...|-..|+.++|.+.+.+
T Consensus 373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 9999999887 5676 67899999999999999999999999884 8998 68999999999999999999999988
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 452 M-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 452 m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
. .+.|. ....+.|.+.|...|++.+|+..++..+.+.|+.+.+|..++..+.-..+|.+
T Consensus 448 AI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 448 AIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 6 67775 45789999999999999999999999999999999999998888776677766
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-17 Score=188.74 Aligned_cols=447 Identities=9% Similarity=0.018 Sum_probs=229.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCC------cccHHH----------------
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE------IKIWNS---------------- 109 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~---------------- 109 (645)
++.++|.+.++.+++.. +.++.....|...+...|+.++|...|+++.... ...|..
T Consensus 161 g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 161 AQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHH
Confidence 78889999999998875 4567788899999999999999999998864211 011110
Q ss_pred -HHHHHHHcCChhHHHHHHHHHhhc-----------CchhhccCChHHHHHHHccCCC--C-CcchHHHHHHHHHhcCCh
Q 048812 110 -IIENQLINGYPQEVFAIYLYLVTR-----------TVLLNKCGKLKEVCQLFDKLPN--R-DVISWNTMISCYTSMGMY 174 (645)
Q Consensus 110 -li~~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g~~ 174 (645)
.+..+-.......|...+.++... ...+...|++++|+..|++..+ | +...+..|...|.+.|++
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 010000011112223333222110 0223344555555555544332 2 334445555555555555
Q ss_pred HHHHHHHHHHhhCCCCC-ChhhH------------HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc
Q 048812 175 REGLGLLSKMGAEGVSP-DEVTM------------VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241 (645)
Q Consensus 175 ~~A~~~~~~m~~~g~~p-~~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 241 (645)
++|+..|++..+..... +...+ ......+.+.|++++|.+.+..+++.. +.+...+..+...|...
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR 398 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 55555555544432110 00000 011223344455555555555555443 23334444445555555
Q ss_pred CCHHHHHHHHcccCCCCC-ChhhH------------------------------------------HHHHHHHHhcCCHH
Q 048812 242 GKIGEAQKLLGRYEIDEV-DVVLW------------------------------------------TTLVSGYVKSNERD 278 (645)
Q Consensus 242 g~~~~A~~~~~~m~~~~~-~~~~~------------------------------------------~~li~~~~~~g~~~ 278 (645)
|++++|.+.|++.....| +...+ ..+...+...|+++
T Consensus 399 g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~ 478 (1157)
T PRK11447 399 KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWA 478 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHH
Confidence 555555555544322222 12222 23334455566666
Q ss_pred HHHHHHHhcc--cCCc-hhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcC--------------CCCCcHH
Q 048812 279 EARRLFDEMV--ERNL-ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ--------------ISIDNIE 341 (645)
Q Consensus 279 ~A~~~~~~m~--~~~~-~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~--------------~~~~~~~ 341 (645)
+|++.|++.. .|+. ..+..+...| ...|..+.+......+++.. ...++.+
T Consensus 479 eA~~~~~~Al~~~P~~~~~~~~LA~~~------------~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 479 QAAELQRQRLALDPGSVWLTYRLAQDL------------RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHH
Confidence 6666666665 2321 1222222222 22233333333333332211 1122455
Q ss_pred HHHHHHhhcCcCC----hh---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 048812 342 LAYDLFSEISEKN----VY---------LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE 408 (645)
Q Consensus 342 ~A~~~f~~~~~~~----~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 408 (645)
+|...++.+.... .. .+..+...+...|+.++|+.+++ . .+++...+..+...+...|+.++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHH
Confidence 5666666554311 10 11223445566666666666655 1 23344455556666677777777
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048812 409 GYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLT 485 (645)
Q Consensus 409 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 485 (645)
|.+.|++..+ ..| +...+..+..+|...|++++|.+.++.. ...| +..++..+..++...|++++|.+++++++
T Consensus 622 A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 622 ARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7777777664 244 3566666777777777777777777665 2333 34455566666667777777777777777
Q ss_pred hcCCCCc------hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 486 ETDPLND------GAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 486 ~~~p~~~------~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+..|+++ ..+..+..++...|++++|...+++...
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6554433 2444556677777777777777776643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-18 Score=179.01 Aligned_cols=282 Identities=15% Similarity=0.134 Sum_probs=227.6
Q ss_pred CChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHhcCCChHHHHH
Q 048812 141 GKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD---EVTMVSLISARTKLRDLEMGKN 214 (645)
Q Consensus 141 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~ 214 (645)
|++++|...|.++.+ .+..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|+++.|..
T Consensus 49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 444444444444432 3456889999999999999999999999987643222 2467788889999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD------VVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+....|+ ...|..+...+.+.|++++|.+.|+++.
T Consensus 129 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 129 LFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999998764 567788999999999999999999999985433332 1245677888899999999999998876
Q ss_pred cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 289 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
+.+ +.+...+..+...|.+.
T Consensus 208 ~~~------------------------------------------------------------p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 208 AAD------------------------------------------------------------PQCVRASILLGDLALAQ 227 (389)
T ss_pred hHC------------------------------------------------------------cCCHHHHHHHHHHHHHC
Confidence 432 12345677888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
|++++|+++|+++...+..+...++..+..++...|++++|.+.++++.+ ..|+...+..++..+.+.|++++|.++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999764332356788899999999999999999999885 367777779999999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 048812 449 ITSM-PIPPDVSIWSSLLRACRC---HQNVKLAEHAFKHLTE 486 (645)
Q Consensus 449 ~~~m-~~~pd~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~ 486 (645)
++++ ...|+...++.++..+.. .|+.+++..+++++++
T Consensus 305 l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 305 LREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9876 667999999999988764 5689999999999987
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-17 Score=161.77 Aligned_cols=347 Identities=15% Similarity=0.161 Sum_probs=251.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh-HHHHHH
Q 048812 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS-LLNYLV 235 (645)
Q Consensus 158 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li 235 (645)
..+|..+...+-..|++++|+++|+.|++. +|+ ...|..+..++...|+.+.|.+.+.+.++.+ |+.. ..+-+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 456777777777777777777777777765 343 4467777777777777777777777766553 3333 223344
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhh
Q 048812 236 DMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314 (645)
Q Consensus 236 ~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~ 314 (645)
+..-..|++++|...+.+..+..|. .+.|+.|...+-..|+...|+.-|++..+-|..- +.+|...| ...
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f----~dAYiNLG-----nV~ 262 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF----LDAYINLG-----NVY 262 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc----hHHHhhHH-----HHH
Confidence 4445567777777666654444453 4567777777777777777777777766333211 11222222 111
Q ss_pred ccccchhhHH--------------HHHHHHHHcCCCCCcHHHHHHHHhhcCc--CC-hhHHHHHHHHHHHcCCHHHHHHH
Q 048812 315 ASIGALYHGI--------------WVHVYIKKNQISIDNIELAYDLFSEISE--KN-VYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 315 ~~~~~l~~g~--------------~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l 377 (645)
...+..+.+- .+|+.+.-...+.+.++.|...|++..+ |+ ...||.|..++-..|+..+|.+.
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHH
Confidence 1111111111 1222222222334488899999887765 33 57899999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 048812 378 FLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PI 454 (645)
Q Consensus 378 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 454 (645)
|.+.... .|+ ..+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|...+++. .+
T Consensus 343 YnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 343 YNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9998874 565 67899999999999999999999998774 6776 678899999999999999999999886 78
Q ss_pred CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 455 PPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 455 ~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|+. ..++.+...|...|+.+.|.+.+.+++..+|.-+.++..|..+|-.+|+..+|+.-++...+..
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 8875 4899999999999999999999999999999999999999999999999999999999886643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-16 Score=175.36 Aligned_cols=383 Identities=12% Similarity=0.042 Sum_probs=235.7
Q ss_pred hhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCC
Q 048812 77 TQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154 (645)
Q Consensus 77 ~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~ 154 (645)
..+-+.|.+.|+++.|...|++.. .|+...|..+..+|.+.|++++|++.+.+.+..+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------------------- 190 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------------------- 190 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------------------
Confidence 345566778888999998888754 5677778888888888888888888777766532
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC----------------------------CC-ChhhHHHHHHHHhc
Q 048812 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV----------------------------SP-DEVTMVSLISARTK 205 (645)
Q Consensus 155 ~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------~p-~~~t~~~ll~~~~~ 205 (645)
..+...|..+..+|...|++++|+.-|......+- .| +...+..+.. +..
T Consensus 191 p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~ 269 (615)
T TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQ 269 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHH
Confidence 11223344444444444444444444333222110 00 0001110000 000
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH------HHcCCHHHHHHHHcccCCC---CC-ChhhHHHHHHHHHhcC
Q 048812 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY------FKCGKIGEAQKLLGRYEID---EV-DVVLWTTLVSGYVKSN 275 (645)
Q Consensus 206 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y------~~~g~~~~A~~~~~~m~~~---~~-~~~~~~~li~~~~~~g 275 (645)
.........-+.... ..+......++..+ ...+++++|.+.|+..... .| +...|+.+...+...|
T Consensus 270 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 270 SFRPKPRPAGLEDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred HccCCcchhhhhccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 000000000000000 00000001111111 1234566666666653221 12 3445666666666677
Q ss_pred CHHHHHHHHHhcccCCch---hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC-
Q 048812 276 ERDEARRLFDEMVERNLI---SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS- 351 (645)
Q Consensus 276 ~~~~A~~~~~~m~~~~~~---t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~- 351 (645)
++++|+..|++..+.+.. +|..+-..+.. .+++++|...|+...
T Consensus 346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~--------------------------------~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLE--------------------------------LGDPDKAEEDFDKALK 393 (615)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------------------------------CCCHHHHHHHHHHHHH
Confidence 777777777666532221 22222211211 125555665555433
Q ss_pred --cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChH
Q 048812 352 --EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQ 427 (645)
Q Consensus 352 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 427 (645)
..+...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|...|+...+ ..| +..
T Consensus 394 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~ 468 (615)
T TIGR00990 394 LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPD 468 (615)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChH
Confidence 245778999999999999999999999999885 454 66777788899999999999999999885 345 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPPDV-S-------IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~-~-------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
.|+.+..++...|++++|.+.|++. ...|+. . .++..+..+...|++++|+.+++++++++|++...+..+
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~l 548 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 8899999999999999999999885 444431 1 122222234446999999999999999999998899999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+.+|...|++++|.+.+++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999988654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-14 Score=164.30 Aligned_cols=474 Identities=11% Similarity=0.010 Sum_probs=301.8
Q ss_pred cccCCChhhHHHHHhhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHH--------HHhcCChHHHHHHHhhCCCCC--c
Q 048812 35 ANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEF--------LVFTGDLGYAQQIIRQGDEPE--I 104 (645)
Q Consensus 35 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~g~~~~A~~~f~~~~~~~--~ 104 (645)
....|+...|...+...++.+.+..+++.+++.. +.+..++..+... |.+.+....|+. .+...|+ .
T Consensus 105 v~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~ 181 (987)
T PRK09782 105 LKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEG 181 (987)
T ss_pred HhcCcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCc
Confidence 3456666666666655677777778888887775 3445555555555 777766666666 3333333 3
Q ss_pred cc-HHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhhc-cCChHHHHHHHccCCCCCcchHHHHHHHHHhc
Q 048812 105 KI-WNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLNK-CGKLKEVCQLFDKLPNRDVISWNTMISCYTSM 171 (645)
Q Consensus 105 ~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~-~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~ 171 (645)
.. .-.+...|.+.+++++|+.++.++.+.+ ..|.. .++ +.|..+++...+.|...+.++...|.+.
T Consensus 182 ~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~ 260 (987)
T PRK09782 182 KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHC
Confidence 33 3444889999999999999999999865 45665 366 8888888765556888999999999999
Q ss_pred CChHHHHHHHHHHhhCCCC-CChhhHHHHH------------------------------HHHhcCCChHHHHHH-----
Q 048812 172 GMYREGLGLLSKMGAEGVS-PDEVTMVSLI------------------------------SARTKLRDLEMGKNL----- 215 (645)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll------------------------------~~~~~~~~~~~a~~~----- 215 (645)
|+.++|.++++++...-.. |...++..++ .-+.+.++++.++++
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 9999999999998654222 3333332222 112222333322222
Q ss_pred ------------------------HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC----ChhhHHHH
Q 048812 216 ------------------------HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV----DVVLWTTL 267 (645)
Q Consensus 216 ------------------------~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~----~~~~~~~l 267 (645)
+..+.+.. +-+....--+.-...+.|+.++|.++|++.-...+ +...-+-+
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 341 ANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred cchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 11111110 11222222222334566777777777765322111 12223344
Q ss_pred HHHHHhcCC-------------------------HHH---HHHHHHhcc--cCC---chhHHHHHHhhhccCCchhh---
Q 048812 268 VSGYVKSNE-------------------------RDE---ARRLFDEMV--ERN---LISWTLMISGMLNQDAEFKY--- 311 (645)
Q Consensus 268 i~~~~~~g~-------------------------~~~---A~~~~~~m~--~~~---~~t~~~ll~~~~~~~~~~~~--- 311 (645)
+..|.+.+. ..+ +...+.... .|+ ...|..+-..+......-.+
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~ 499 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAW 499 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHH
Confidence 444444433 111 222222222 122 22233222222221100000
Q ss_pred -hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048812 312 -KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388 (645)
Q Consensus 312 -~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 388 (645)
.++.....- ..+-.+.......++.++|...|+.+.. ++...+..+...+.+.|+.++|...|++..+.. |
T Consensus 500 ~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P 573 (987)
T PRK09782 500 LQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--L 573 (987)
T ss_pred HHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 111111110 0111111111244588999999986654 445567777888899999999999999998753 4
Q ss_pred CH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048812 389 DQ-VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLL 465 (645)
Q Consensus 389 d~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll 465 (645)
+. ..+..+.......|++++|...+++..+ +.|+...|..+..++.+.|++++|...+++. ...| +...+..+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 43 3333444455667999999999999884 5788889999999999999999999999887 5556 456778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++...|+.++|+..++++++.+|+++..+..+..+|...|++++|...+++..+..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999999999999999999999999987644
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-15 Score=170.85 Aligned_cols=403 Identities=9% Similarity=-0.007 Sum_probs=286.8
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHH
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A 146 (645)
+.++....-.+......|+.++|++++.+..+ .+...+..+...+...|++++|+++|++...
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-------------- 77 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS-------------- 77 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 34555566677778888999999988887653 3344578888888777776666666655431
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 048812 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226 (645)
Q Consensus 147 ~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 226 (645)
....+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.+.|...+..+++.. +.
T Consensus 78 ------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~ 148 (765)
T PRK10049 78 ------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQ 148 (765)
T ss_pred ------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 112345667788888999999999999999998762 23444 7777788888999999999999999875 44
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHhccc---
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV------VLWTTLVSGYV-----KSNER---DEARRLFDEMVE--- 289 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~--- 289 (645)
+...+..+...+.+.|..+.|.+.++.... .|+. .....++.... ..+++ ++|++.++.+.+
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 666667788888889999999999987443 3321 11222222222 22334 778888887762
Q ss_pred CCchhHHHHHHhhhccCCchhhhhhccccchhhHHHH-HHHHHHcCCCCCcHHHHHHHHhhcCcCC--hh--HHHHHHHH
Q 048812 290 RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV-HVYIKKNQISIDNIELAYDLFSEISEKN--VY--LWTSVIAA 364 (645)
Q Consensus 290 ~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i-~~~~~~~~~~~~~~~~A~~~f~~~~~~~--~~--~~~~li~~ 364 (645)
.+......... +..- ...+ +..+++++|...|+.+...+ .. .--.+...
T Consensus 228 ~~p~~~~~~~~----------------------a~~d~l~~L----l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~ 281 (765)
T PRK10049 228 DNPDATADYQR----------------------ARIDRLGAL----LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASA 281 (765)
T ss_pred cCCccchHHHH----------------------HHHHHHHHH----HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 12111111110 0000 0001 12247899999999887632 11 12225778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKP---DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN----------IKPK---MQH 428 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~ 428 (645)
|...|++++|+..|+++....... .......+..++...|++++|.++++.+.+... -.|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999987643111 134566677788999999999999999885321 1123 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
+..+..++...|++++|+++++++ ...| +...+..+...+...|++++|+..++++++++|+++..+..++..+...|
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 567888999999999999999997 3334 67789999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 048812 507 RLDDMSRIRMKLRDMG 522 (645)
Q Consensus 507 ~~~~a~~~~~~m~~~~ 522 (645)
+|++|..+++.+.+..
T Consensus 442 ~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 442 EWRQMDVLTDDVVARE 457 (765)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999997643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-15 Score=167.58 Aligned_cols=312 Identities=12% Similarity=0.024 Sum_probs=158.7
Q ss_pred ccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHHH
Q 048812 139 KCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGKN 214 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 214 (645)
+.|+.++|..+++.... .+...+..++.+....|++++|++.|+++... .|+ ...+..+...+...|+++.|..
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666555432 23334444455555566666666666666554 232 3345555555566666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCc-
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNL- 292 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 292 (645)
.+..+++.. +.+...+..+...|...|+.++|...++.+....| +...+..+ ..+.+.|++++|...++.+...+.
T Consensus 132 ~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 132 LAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 666666543 33455555566666666666666666654322223 22222222 235556666666666665543221
Q ss_pred ---hhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHH
Q 048812 293 ---ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYA 366 (645)
Q Consensus 293 ---~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 366 (645)
..+..+...+. ..++.++|...|+.... .+...+..+...|.
T Consensus 210 ~~~~~~~~l~~~l~--------------------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 210 ERQESAGLAVDTLC--------------------------------AVGKYQEAIQTGESALARGLDGAALRRSLGLAYY 257 (656)
T ss_pred cchhHHHHHHHHHH--------------------------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 11111111111 12255555555554432 23445555555566
Q ss_pred HcCCHHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcC
Q 048812 367 MAGHAQK----AIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAG 440 (645)
Q Consensus 367 ~~g~~~~----A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 440 (645)
..|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++..+ ..|+ ...+..+...|.+.|
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCC
Confidence 6666553 55556555543 233 44555555555566666666666655553 2333 334445555566666
Q ss_pred CHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 441 HLEESANFITSM-PIPPDVSIW-SSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 441 ~~~~A~~~~~~m-~~~pd~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 666666655554 233443222 223344555666666666666666655543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-15 Score=166.30 Aligned_cols=452 Identities=11% Similarity=0.002 Sum_probs=291.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHHcCChhHHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE--PEIKIWNSIIENQLINGYPQEVFAIYLY 129 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (645)
|++.+|...+..+++.. |-++.++..|...|.+.|++++|+..+++... |+-..|..++... +++.+|...|++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 89999999999999887 34588899999999999999999999998763 3323333333332 888999999999
Q ss_pred HhhcC-----------ch--------hhccCChHHHHHHHccCCCCC--cchHHH-HHHHHHhcCChHHHHHHHHHHhhC
Q 048812 130 LVTRT-----------VL--------LNKCGKLKEVCQLFDKLPNRD--VISWNT-MISCYTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 130 m~~~~-----------~~--------~~~~g~~~~A~~~f~~m~~~~--~~~~n~-li~~~~~~g~~~~A~~~~~~m~~~ 187 (645)
+...+ .. |.+.+....|++ .+...|+ ...... +...|.+.|++++|++++.++.+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 98854 22 656655556665 2322333 443344 488999999999999999999988
Q ss_pred CCCCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CCChhh
Q 048812 188 GVSPDEVTMVSLISARTK-LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID---EVDVVL 263 (645)
Q Consensus 188 g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~ 263 (645)
+.. +..-...+-.++.. .++ +.+..++.. .+..+..+..++.+.|.+.|+.++|.+++.++... .|+..+
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 633 34445556667776 466 666666442 33468888999999999999999999999985433 234444
Q ss_pred HHHHHH------------------------------HHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccC-------
Q 048812 264 WTTLVS------------------------------GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD------- 306 (645)
Q Consensus 264 ~~~li~------------------------------~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~------- 306 (645)
|--++. -+.+.+.++-+.++.. ..|.......-..+....+
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA--TLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCCcchHHHHHHhhccccCchhHHHH
Confidence 433322 1223333333333311 1222221111111111100
Q ss_pred ----------------Cchhh----------------hhhc--------------------cccc---------------
Q 048812 307 ----------------AEFKY----------------KSCA--------------------SIGA--------------- 319 (645)
Q Consensus 307 ----------------~~~~~----------------~a~~--------------------~~~~--------------- 319 (645)
+..++ .+.. ..+.
T Consensus 364 ~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 364 LARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 00000 0000 0000
Q ss_pred ----------hhhHHHHHHHHHHc-CCC-----------------CCcHHHHHHHHhhcCcCChhHHHHHHHH--HHHcC
Q 048812 320 ----------LYHGIWVHVYIKKN-QIS-----------------IDNIELAYDLFSEISEKNVYLWTSVIAA--YAMAG 369 (645)
Q Consensus 320 ----------l~~g~~i~~~~~~~-~~~-----------------~~~~~~A~~~f~~~~~~~~~~~~~li~~--~~~~g 369 (645)
+.........+.+. +.. .+..++|...|..........|+.+..+ +...|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCC
Confidence 00000000000000 000 0133345554444333222234444333 35788
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q 048812 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 370 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
++++|+..|+++... .|+...+..+..++...|+.++|..+++...+ ..|+ ...+..+...+.+.|++++|...
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 888998888887553 45555566677778888999999999988874 2344 33344444455566999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 449 ITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 449 ~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+++. ...|+...|..+...+.+.|+.++|+..++++++++|+++..+..++.++...|++++|+..+++..+..
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9886 6678888999999999999999999999999999999999999999999999999999999999887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-15 Score=161.88 Aligned_cols=399 Identities=11% Similarity=-0.013 Sum_probs=239.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
++++.|...+...++. .|++..+..+...|.+.|++++|...+++.. +.+...|..+..+|...|++++|+..|.
T Consensus 141 ~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~ 218 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218 (615)
T ss_pred CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8899999999998876 4678888999999999999999999999865 3456689999999999999999999887
Q ss_pred HHhhcC--------chhh---ccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhH
Q 048812 129 YLVTRT--------VLLN---KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTM 196 (645)
Q Consensus 129 ~m~~~~--------~~~~---~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 196 (645)
.....+ .++. +......+...++.-+ ++..+|..+.. |........+..-+..-.+ ..|.. ..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 294 (615)
T TIGR00990 219 ASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQ 294 (615)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccch
Confidence 665422 0000 0011122333333322 22233332222 2111111111111111100 01110 001
Q ss_pred HHHHHH---HhcCCChHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHH
Q 048812 197 VSLISA---RTKLRDLEMGKNLHLFLEEST-M-KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSG 270 (645)
Q Consensus 197 ~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~ 270 (645)
..+... ....+++++|.+.+..+++.+ . +.....++.+...|...|++++|...|++.....| +..+|..+...
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 100000 012244555555555555443 1 22233445555555555555555555555332333 23355555555
Q ss_pred HHhcCCHHHHHHHHHhcccCC---chhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHH
Q 048812 271 YVKSNERDEARRLFDEMVERN---LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLF 347 (645)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~~---~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f 347 (645)
+...|++++|...|++..+.+ ...|..+-..+. ..+++++|...|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~--------------------------------~~g~~~~A~~~~ 422 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF--------------------------------IKGEFAQAGKDY 422 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------------HcCCHHHHHHHH
Confidence 555555555555555554211 111211111111 112445555555
Q ss_pred hhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 048812 348 SEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424 (645)
Q Consensus 348 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 424 (645)
+.... .+...|..+...+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|.+.|+...+ +.|
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p 498 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEK 498 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCC
Confidence 44332 35667888889999999999999999998874 233467888888999999999999999999884 344
Q ss_pred Ch--------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 425 KM--------QHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 425 ~~--------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+. ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...|+++.++.+...
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 31 11222233344579999999999885 55564 45788999999999999999999999999877543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-14 Score=158.59 Aligned_cols=313 Identities=15% Similarity=0.018 Sum_probs=211.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
|++..|..+...++.....+ +.....|.......|+++.|...|+++. +.+...|..+...+.+.|++++|+..|+
T Consensus 56 g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred CCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777776665333 3334444455556777777777777764 2345566666666666666666665555
Q ss_pred HHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 129 ~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
++.. ....+...|..+...+.+.|++++|+..++.+...... +...+.. +..+...|+
T Consensus 135 ~Al~--------------------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~ 192 (656)
T PRK15174 135 QAWL--------------------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSR 192 (656)
T ss_pred HHHH--------------------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCC
Confidence 5432 11234567778888888888888888888877665322 2222322 234667788
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHH----HHHH
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDE----ARRL 283 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~----A~~~ 283 (645)
+++|...+..+++....++......+...+.+.|+.++|...|++.....| +...+..+...+.+.|++++ |+..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 888888888877664334444455556778888888888888887544444 56677778888888888875 6777
Q ss_pred HHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHH
Q 048812 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA 363 (645)
Q Consensus 284 ~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~ 363 (645)
|++....+ +.+...+..+..
T Consensus 273 ~~~Al~l~------------------------------------------------------------P~~~~a~~~lg~ 292 (656)
T PRK15174 273 WRHALQFN------------------------------------------------------------SDNVRIVTLYAD 292 (656)
T ss_pred HHHHHhhC------------------------------------------------------------CCCHHHHHHHHH
Confidence 66654322 234567778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCC
Q 048812 364 AYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-QHYGCMVDLLGRAGH 441 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 441 (645)
.+...|++++|+..+++.... .|+ ......+..++...|++++|...|+.+.+ ..|+. ..+..+..++...|+
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCC
Confidence 888889999999988888874 444 45566677788888999999888888775 35553 334445677888899
Q ss_pred HHHHHHHHHhC
Q 048812 442 LEESANFITSM 452 (645)
Q Consensus 442 ~~~A~~~~~~m 452 (645)
.++|.+.+++.
T Consensus 368 ~deA~~~l~~a 378 (656)
T PRK15174 368 TSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHH
Confidence 99999888875
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-13 Score=149.52 Aligned_cols=415 Identities=10% Similarity=0.038 Sum_probs=290.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII---ENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~ 128 (645)
|+...|...+..+++......+.++ .++..+...|+.++|+..+++...|+...+..+. ..|...|++++|+++|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888888888777522212344 7888888889999999998888766444443333 35555566666665555
Q ss_pred HHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 129 ~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
++.+. - ..|...+..++..|.+.++.++|++.++++... .|+...+..++..+...++
T Consensus 127 kaL~~-------------------d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 127 SSLKK-------------------D-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHhh-------------------C-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 54321 1 123455667788899999999999999998876 5665666444444444566
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhh-----H--HHHHHHHH---------
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL-----W--TTLVSGYV--------- 272 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~-----~--~~li~~~~--------- 272 (645)
..+|.+.++.+++.. +.+...+..++....+.|-...|.++..+ - |+..+ | ...+.-.+
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~--~--p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE--N--PNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh--C--ccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 656999999999886 66777888888999999999999988876 2 22111 1 00111111
Q ss_pred hcCCH---HHHHHHHHhccc-----CCchh-HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHH
Q 048812 273 KSNER---DEARRLFDEMVE-----RNLIS-WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELA 343 (645)
Q Consensus 273 ~~g~~---~~A~~~~~~m~~-----~~~~t-~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A 343 (645)
...++ +.|+.-++.+.. |...+ |.. +...-+-.....+++.++
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~----------------------------~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQR----------------------------ARIDRLGALLVRHQTADL 311 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHH----------------------------HHHHHHHHHHHhhhHHHH
Confidence 11222 334444444432 21111 100 011111111223378899
Q ss_pred HHHHhhcCcCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 048812 344 YDLFSEISEKN----VYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-----TKPDQVTFIALLSACSHGGLVDEGYDFLS 414 (645)
Q Consensus 344 ~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 414 (645)
.+.|+.+..+. ..+--++..+|...+++++|+.+|++..... ..++......|..++...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999988532 3455678899999999999999999987643 12334446788999999999999999999
Q ss_pred HhHHhcC----------CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHH
Q 048812 415 KKSRVYN----------IKPK---MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 415 ~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~ 479 (645)
.+.+... -.|+ ...+..++..+.-.|++.+|++.++++ . .+-|...+..+...+...|++.+|+.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9985221 0122 345566788899999999999999998 3 33478899999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 480 ~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++.+..++|++..+...++..+...|+|.+|..+.+...+..
T Consensus 472 ~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 472 ELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999998886643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-14 Score=160.93 Aligned_cols=355 Identities=11% Similarity=0.050 Sum_probs=258.5
Q ss_pred ccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 048812 139 KCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNL 215 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (645)
..|+.++|++++.+... .+...+..+...+.+.|++++|+++|++.++.. +.+...+..+...+...|++++|...
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666666542 344568999999999999999999999988762 23455677788888999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchh
Q 048812 216 HLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294 (645)
Q Consensus 216 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t 294 (645)
++.+++.. +.+.. +..+..++...|+.++|...++++....| +...+..+...+...|..++|++.++.... +..
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~- 181 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA- 181 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH-
Confidence 99999874 55566 88899999999999999999998655566 556677788889999999999999987764 211
Q ss_pred HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCC-----CCCcH---HHHHHHHhhcCc-----CChh-HH--
Q 048812 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQI-----SIDNI---ELAYDLFSEISE-----KNVY-LW-- 358 (645)
Q Consensus 295 ~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~-----~~~~~---~~A~~~f~~~~~-----~~~~-~~-- 358 (645)
+..-+. ...+...++..+ ..+++ ++|...++.+.. |+.. .+
T Consensus 182 ~~~~l~-----------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 182 EKRDLE-----------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHHH-----------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 000000 000111111111 11122 566666665552 2211 11
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHH
Q 048812 359 --TSVIAAYAMAGHAQKAIDLFLEMEETGTK-PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP--KMQHYGCMV 433 (645)
Q Consensus 359 --~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li 433 (645)
...+.++...|++++|+..|+++.+.+.. |+.. -..+..++...|++++|..+|+++.+.....+ .......|.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11134556779999999999999987632 4432 22246689999999999999999874322111 135567777
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCC-------------C---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 434 DLLGRAGHLEESANFITSMP-IPP-------------D---VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~-~~p-------------d---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.++...|++++|.++++++. ..| + ...+..+...+...|++++|+.+++++++..|.++..+.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 78899999999999998872 222 2 224556777789999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++.++...|++++|++.+++..+..
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999887644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-12 Score=126.86 Aligned_cols=410 Identities=13% Similarity=0.127 Sum_probs=279.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHH---HHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEF---LVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFA 125 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 125 (645)
+.+.++.-++.+|...|++-++.+--.|+.. |-...-+-.-++.|-.|.. .+..+|
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------------------ 190 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------------------ 190 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------------------
Confidence 6677777888888888877777665555543 2222222222344444442 223333
Q ss_pred HHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc
Q 048812 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205 (645)
Q Consensus 126 ~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (645)
|.|.+.+ -+|+..| +...+|..||.|.|+-...+.|.++|++-.+...+.+..+||.+|.+.+-
T Consensus 191 -------------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 191 -------------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred -------------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 3455544 4454444 67789999999999999999999999999998889999999999988654
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHH----cccCC--CCCChhhHHHHHHHHHhcCCHHH
Q 048812 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL----GRYEI--DEVDVVLWTTLVSGYVKSNERDE 279 (645)
Q Consensus 206 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~----~~m~~--~~~~~~~~~~li~~~~~~g~~~~ 279 (645)
. .++.+..+|+...+.||..|+|+++.+.++.|+++.|++.+ .+|+. .+|...+|.-+|..+.+.++..+
T Consensus 255 ~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 255 S----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred h----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 3 34889999999999999999999999999999998876654 44332 36889999999999999887744
Q ss_pred -HHHHHHhcc--------cC----CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHH
Q 048812 280 -ARRLFDEMV--------ER----NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346 (645)
Q Consensus 280 -A~~~~~~m~--------~~----~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~ 346 (645)
|..++.++. +| |..-+.+.+ +.|.++.+.+.+.++|+.+.... .
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM------------~Ic~~l~d~~LA~~v~~ll~tg~-N---------- 387 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAM------------SICSSLRDLELAYQVHGLLKTGD-N---------- 387 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHH------------HHHHHhhhHHHHHHHHHHHHcCC-c----------
Confidence 455555443 22 223344444 78999999999999998765431 1
Q ss_pred HhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 048812 347 FSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424 (645)
Q Consensus 347 f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 424 (645)
+..|.. ....-|..+..+.++....+.-+.+|+.|.-.-+-|+..+...++.|....+.++--.+++..++ .+|-.-
T Consensus 388 ~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~ 466 (625)
T KOG4422|consen 388 WKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTF 466 (625)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-Hhhhhh
Confidence 111111 12234566777888888899999999999877788999999999999999999888888888887 566544
Q ss_pred ChHHHHHHHHHHHHcC---------CHHH-----HHHHHHh-------C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048812 425 KMQHYGCMVDLLGRAG---------HLEE-----SANFITS-------M-PIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g---------~~~~-----A~~~~~~-------m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 482 (645)
+...-.-+...+++.. ++.. |.++++. | .........+..+--+.+.|..++|-+++.
T Consensus 467 r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~ 546 (625)
T KOG4422|consen 467 RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLG 546 (625)
T ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHH
Confidence 4444444445555443 1111 1111111 1 122344455566666778899999999998
Q ss_pred HHHhcC---CCCchh--HHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 483 HLTETD---PLNDGA--HVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 483 ~~~~~~---p~~~~~--y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
.++..+ |..+.. ..-|.+.-........|..+++.|...+.
T Consensus 547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 887633 433322 12344444556667788888888866554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-13 Score=147.40 Aligned_cols=388 Identities=13% Similarity=0.066 Sum_probs=253.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhhccCChHHHHHHHccCCCCCcchHHHH---HHHHHhcC
Q 048812 107 WNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLNKCGKLKEVCQLFDKLPNRDVISWNTM---ISCYTSMG 172 (645)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~l---i~~~~~~g 172 (645)
|...|. ..+.|++.+|++.|++..+.+ .++...|+.++|+..+++...|+...+..+ ...|...|
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 444443 357888888888888877643 234466777777777777665544333332 33555667
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHc
Q 048812 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 252 (645)
++++|+++|+++.+... -+...+..++..+...++.++|.+.+..+.+. .|+...+-.++..+...++..+|.+.++
T Consensus 117 dyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 77777777777766531 13445555666666777777777777666655 3333344444444444455555777777
Q ss_pred ccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHH
Q 048812 253 RYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIK 331 (645)
Q Consensus 253 ~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~ 331 (645)
++....| +...+..+..+..+.|-...|.++..+- |+.++-..... ++ .......+
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p~~f~~~~~~~-------------------l~--~~~~a~~v 250 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN--PNLVSAEHYRQ-------------------LE--RDAAAEQV 250 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC--ccccCHHHHHH-------------------HH--HHHHHHHH
Confidence 6544455 4555666667777777777776665542 33222111110 00 00111222
Q ss_pred HcCCCC-----C---cHHHHHHHHhhcCc-----CCh-hHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048812 332 KNQISI-----D---NIELAYDLFSEISE-----KNV-YLW----TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393 (645)
Q Consensus 332 ~~~~~~-----~---~~~~A~~~f~~~~~-----~~~-~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 393 (645)
+..... + -++.|..-++.+.. |.. ..| -=.+-++...|++.++++.|+.|...|.+.-..+-
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 222111 1 33444444444332 221 122 23466888999999999999999998866444588
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcC----CCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC-C-------------
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYN----IKPKMQHYGCMVDLLGRAGHLEESANFITSMPI-P------------- 455 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~------------- 455 (645)
..+..+|...+.+++|..+++++....+ ..++......|..+|...+++++|..+++++.- .
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 8999999999999999999999875432 233455568899999999999999999998821 1
Q ss_pred C--CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 456 P--DVS-IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 456 p--d~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
| |-. ....++..+.-.|++.+|++.+++++...|.|+.....+.+++...|+..+|++.++.....
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 2 222 33455666888999999999999999999999999999999999999999999999777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-12 Score=135.13 Aligned_cols=431 Identities=15% Similarity=0.154 Sum_probs=292.2
Q ss_pred CHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCC------cccHHHHHHHHHHcCChhHHHHH
Q 048812 53 SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE------IKIWNSIIENQLINGYPQEVFAI 126 (645)
Q Consensus 53 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 126 (645)
+...|.++.....+.. +.+|.+.+.|.+.|..-|++..+..+...+...+ ..+|--+..+|-..|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3455555555555444 4678888888888888999999888887765332 33577788888889999999999
Q ss_pred HHHHhhcC------------chhhccCChHHHHHHHccCCC--C-CcchHHHHHHHHHhcC----ChHHHHHHHHHHhhC
Q 048812 127 YLYLVTRT------------VLLNKCGKLKEVCQLFDKLPN--R-DVISWNTMISCYTSMG----MYREGLGLLSKMGAE 187 (645)
Q Consensus 127 ~~~m~~~~------------~~~~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g----~~~~A~~~~~~m~~~ 187 (645)
|.+....+ .||.+.|+++.|...|+.+.. | +..+--.|...|+..+ ..+.|..++.+..+.
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 98887744 778888999999988888764 3 3445555566666654 345666666665554
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC-----C
Q 048812 188 GVSPDEVTMVSLISARTKLRDLEMGKNLHLFL----EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID-----E 258 (645)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~ 258 (645)
- +.|...|..+...+....- ......+..+ ...+-++.+.+.|.+...+...|+++.|...|++.... .
T Consensus 410 ~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 2 3355667666666655433 3335555444 34455677888899999999999999999888774222 1
Q ss_pred CCh------hhHHHHHHHHHhcCCHHHHHHHHHhccc--CCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHH
Q 048812 259 VDV------VLWTTLVSGYVKSNERDEARRLFDEMVE--RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYI 330 (645)
Q Consensus 259 ~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~ 330 (645)
+|. .+--.+...+-..++++.|.+.|..+.+ |+. |++|.+.| | +
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y------Id~ylRl~-------~---------------m 539 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY------IDAYLRLG-------C---------------M 539 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh------HHHHHHhh-------H---------------H
Confidence 222 1222345555667788888888888873 443 23333321 0 0
Q ss_pred HHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc----
Q 048812 331 KKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSH---- 402 (645)
Q Consensus 331 ~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~---- 402 (645)
. ...+...+|...+..... .|...|+-+...|.....+..|.+-|...... ...+|..+..+|.+.|..
T Consensus 540 a---~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 540 A---RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred H---HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 0 111245556666654443 56677777777888888888888877766543 234677777777775542
Q ss_pred --------cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 048812 403 --------GGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSMP--IPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 403 --------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~ 471 (645)
.+..++|++.|.+..+ ..| +...-|.+.-.++..|++.+|.++|.+.. ..-+..+|-.|...|...
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 2356677777777764 344 56666778888888999999999998872 222456788888899999
Q ss_pred CChHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 472 QNVKLAEHAFKHLTETD--PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~--p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|++-.|+++|+..+... .+++.....|..++.+.|+|.+|.+.......
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999888733 34566777889999999999988888776654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-12 Score=122.68 Aligned_cols=420 Identities=14% Similarity=0.132 Sum_probs=260.2
Q ss_pred hhhhHHHHHHhcCChHHHHHHHhhCCC----CC-cccHHHHHHHHHHcCChhHHHHHHHHHhhcC---------------
Q 048812 75 ISTQVFEFLVFTGDLGYAQQIIRQGDE----PE-IKIWNSIIENQLINGYPQEVFAIYLYLVTRT--------------- 134 (645)
Q Consensus 75 ~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------- 134 (645)
+...|...|.......+|+..++-+.+ || ...--.+-..+.+...+.+|+.+|+-.+..-
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 444555667777788888887775432 22 1222234455677778889999888766521
Q ss_pred -chhhccCChHHHHHHHccCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC------------ChhhHHHH
Q 048812 135 -VLLNKCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP------------DEVTMVSL 199 (645)
Q Consensus 135 -~~~~~~g~~~~A~~~f~~m~--~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~t~~~l 199 (645)
..+.+.|.+++|..-|+... .||..+--.|+-++.--|+.++..+.|.+|+.-...| +....+..
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 56778999999999999865 3777665556666677789999999999998643333 33223322
Q ss_pred HH-----HHhcCC--ChHHHHHHHHHHHHhCCCCchh-------------HH--------HHHHHHHHHcCCHHHHHHHH
Q 048812 200 IS-----ARTKLR--DLEMGKNLHLFLEESTMKISGS-------------LL--------NYLVDMYFKCGKIGEAQKLL 251 (645)
Q Consensus 200 l~-----~~~~~~--~~~~a~~~~~~~~~~g~~~~~~-------------~~--------~~li~~y~~~g~~~~A~~~~ 251 (645)
|+ -..+.+ +.+++.-.-..++.--+.|+-. .+ -.-..-|.+.|+++.|.+++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 22 122211 1111111111111111222210 00 01123478999999998877
Q ss_pred cccCCCC-C--ChhhHHHHHHHHHhc-CCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHH
Q 048812 252 GRYEIDE-V--DVVLWTTLVSGYVKS-NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327 (645)
Q Consensus 252 ~~m~~~~-~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~ 327 (645)
.-+.... + +...-|.-.--|.+- .++..|.+.-+.....|...-..+. ..| ...-..|+++.+...+
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~----nkg-----n~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT----NKG-----NIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh----cCC-----ceeeecCcHHHHHHHH
Confidence 6532221 1 111111111112221 2334444443333322221111110 111 1111122222222222
Q ss_pred HHHH-----------HcCCC---CCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048812 328 VYIK-----------KNQIS---IDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ 390 (645)
Q Consensus 328 ~~~~-----------~~~~~---~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 390 (645)
...+ ..|+. .+++++|+..|-.+.. .++...-.+.+.|-...+..+|++++.+.... ++.|.
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 2211 11221 2378888888866543 56777778888999999999999999766553 45567
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 048812 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRAC 468 (645)
Q Consensus 391 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~ 468 (645)
..+..|...|-+.|+-.+|.+++-.-. ..-| +.++...|..-|....-+++|...|++. -++|+..-|..++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 788888899999999999998876533 3444 7888889999999999999999999997 5789999999999886
Q ss_pred -HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 469 -RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 469 -~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
++.|++++|..+++......|.+....-.|+.++...|-
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 568999999999999999999999988889998888774
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-10 Score=123.02 Aligned_cols=448 Identities=13% Similarity=0.059 Sum_probs=243.7
Q ss_pred CCHHHHHHHHHHHHHh--CCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHH
Q 048812 52 SSIDEFERIHSHLITT--NLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLY 129 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (645)
++...+..++..+++. ..+||+.+.-. ..+.++|+.+.|+..|.+..+-|+..-++++....-.-.+
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~--------- 246 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF--------- 246 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc---------
Confidence 5666666666664443 23455543322 4455667777777777666544443333333221110000
Q ss_pred HhhcCchhhccCChHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CChhhHHHHHHHHh
Q 048812 130 LVTRTVLLNKCGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS--PDEVTMVSLISART 204 (645)
Q Consensus 130 m~~~~~~~~~~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~ 204 (645)
.....+..+..++.+.- ..|++..|.|..-|.-.|++..+..+...+...-.. .-...|-.+.+++-
T Consensus 247 --------~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 247 --------NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred --------cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 01122333333333322 235556666666666666666666666655543211 01224555666666
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcC----CHHH
Q 048812 205 KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSN----ERDE 279 (645)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g----~~~~ 279 (645)
..|+++.|...|-+..+..-..-...+--|..+|.+.|+++.|...|+.+....| +..+...|...|+..+ ..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 6666666666665555443111122223355666666666666666665433344 3444555555555443 3445
Q ss_pred HHHHHHhcccCC---chhHHHHHHhhhccCCchhhhhhcccc-------chhhHHHHHHHHHHcCCCCCcHHHHHHHHhh
Q 048812 280 ARRLFDEMVERN---LISWTLMISGMLNQDAEFKYKSCASIG-------ALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349 (645)
Q Consensus 280 A~~~~~~m~~~~---~~t~~~ll~~~~~~~~~~~~~a~~~~~-------~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~ 349 (645)
|..++.+..++. ...|-.+-..|-+..-..++.+..... .. ....+...+.-..+..+.++.|...|..
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 555554444222 222222222222222111111110000 00 1112222222222333356666666654
Q ss_pred cCc-------CCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 048812 350 ISE-------KNV------YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-VTFIALLSACSHGGLVDEGYDFLSK 415 (645)
Q Consensus 350 ~~~-------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~ 415 (645)
... +|. .+--.+...+-..++++.|.+.|...... .|.- ..|..++..-...+...+|...+..
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 332 222 22223556666778999999999999875 5663 4455554333345777888888888
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH----hCCCCCCHHHHHHHHHHHHh------------cCChHHHHH
Q 048812 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT----SMPIPPDVSIWSSLLRACRC------------HQNVKLAEH 479 (645)
Q Consensus 416 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~pd~~~~~~ll~a~~~------------~g~~~~a~~ 479 (645)
... ....++..++-+.+.+.+...+.-|.+-|. +....+|+.+.-+|.+.|.. .+..++|++
T Consensus 556 ~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 556 ALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 875 334456666667777877777777777444 33344788887777776542 234688889
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 480 AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 480 ~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+|.+++..+|.|..+-+-++-+++..|+|.+|..+|.+.++...
T Consensus 634 ~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 634 LYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 99999999998877777788889999999999999999988664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-11 Score=128.33 Aligned_cols=336 Identities=14% Similarity=0.161 Sum_probs=223.9
Q ss_pred CchhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChH
Q 048812 134 TVLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210 (645)
Q Consensus 134 ~~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (645)
|..+++ |++++|.+++.++.. ++...|-+|...|-+.|+.++++..+-..-... +-|..-|..+-.-..+.|++.
T Consensus 147 N~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 344555 788888888777653 466778888888888888887776654443321 224456777777777788888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC--ChhhHHH----HHHHHHhcCCHHHHHHHH
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV--DVVLWTT----LVSGYVKSNERDEARRLF 284 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--~~~~~~~----li~~~~~~g~~~~A~~~~ 284 (645)
.|.-.+..+++.. +++....---+.+|-+.|+...|..-|.++....| |..-.-. ++..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888776 45555555566777788888888777776433333 1111112 233344444445554444
Q ss_pred HhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHH
Q 048812 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~ 364 (645)
+.... +.+ ..-+...+|.++..
T Consensus 304 e~~~s--------------~~~--------------------------------------------~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 304 EGALS--------------KEK--------------------------------------------DEASLEDLNILAEL 325 (895)
T ss_pred HHHHh--------------hcc--------------------------------------------ccccccHHHHHHHH
Confidence 43221 000 01234557788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTF--------------------------IALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--------------------------~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
|.+...++.|......+......||..-+ .-+.-++.+....+....+.....
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~- 404 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV- 404 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH-
Confidence 88888899999888888762222222111 112222333333333333333333
Q ss_pred hcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 419 VYNIKP--KMQHYGCMVDLLGRAGHLEESANFITSMP---IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 419 ~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
...+.| +...|.-+.++|...|++.+|.+++..+- ..-+...|--+...|...|..+.|.+.+++++...|++..
T Consensus 405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 344334 57889999999999999999999999882 2235779999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 494 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
+-..|..+|...|+.++|.+++..|..-+-+..+++.|
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999886444333345555
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=134.30 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDL 435 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 435 (645)
+..++..+...|+++++..++++..... .+++...|..+...+.+.|+.++|.+.+++..+ ..|+ ......++..
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWL 189 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHH
Confidence 3444445555555555555555544322 223444455555555556666666666655553 3443 4455555666
Q ss_pred HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 436 LGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...+++.....|+|+.....+++++...|+.++|.+
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66666666555555444 1134566788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 048812 514 IRMKL 518 (645)
Q Consensus 514 ~~~~m 518 (645)
++++.
T Consensus 270 ~~~~~ 274 (280)
T PF13429_consen 270 LRRQA 274 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 98765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-09 Score=106.92 Aligned_cols=459 Identities=13% Similarity=0.123 Sum_probs=284.9
Q ss_pred hccccCCChhhHHHHHhhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHH
Q 048812 33 KFANVCPVSLDVIMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNS 109 (645)
Q Consensus 33 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~ 109 (645)
+....-|++..+=-..-.....+.|+.++.+.++.- +.+.. |..+|++...++.|.+++++.. +.+...|-+
T Consensus 371 KALe~iP~sv~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWit 445 (913)
T KOG0495|consen 371 KALEHIPRSVRLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWIT 445 (913)
T ss_pred HHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHH
Confidence 334445665544322222345666777777776653 22333 4456777888899999988654 567788887
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhc----C-------------------------------------------------ch
Q 048812 110 IIENQLINGYPQEVFAIYLYLVTR----T-------------------------------------------------VL 136 (645)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~----~-------------------------------------------------~~ 136 (645)
-...--.+|..+....+..+.+.. + ..
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 777667788888777777765540 0 22
Q ss_pred hhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 048812 137 LNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213 (645)
Q Consensus 137 ~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (645)
+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....|....+..-..||...|+
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 2333444444444443332 23344444444444445555555555555544 1112223333334444456666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhccc--CC
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RN 291 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~ 291 (645)
.++..+.+.. +.+..+|-+-+..-.....++.|+.+|.+.....+....|.--+..---.+..++|++++++..+ |+
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 6666655554 33455555555666666666666666665444445555555544444445556666666655442 22
Q ss_pred chhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--C-ChhHHHHHHHHHHHc
Q 048812 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--K-NVYLWTSVIAAYAMA 368 (645)
Q Consensus 292 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~ 368 (645)
..-+-.|+ | ||.. +.+.++.|...|..-.. | .+..|-.+...=-+.
T Consensus 684 f~Kl~lml------------------G------Qi~e-------~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 684 FHKLWLML------------------G------QIEE-------QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hHHHHHHH------------------h------HHHH-------HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 11111111 1 1111 11256777777765543 3 345677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
|..-+|..++++-+..+ +-|..-|...|..=.+.|+.+.|.....+..++ ...+...|..-|.+..+.++-....+.
T Consensus 733 ~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred cchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHH
Confidence 88888888888877653 336777888888888888888888877777754 344566777777777777776666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCc
Q 048812 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLG 528 (645)
Q Consensus 449 ~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 528 (645)
+++-. -|+.+.-++...+....+++.|.+.|.+.+..+|++..+|.-+...+...|.-++-.+++++..... |..|
T Consensus 810 Lkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG 885 (913)
T KOG0495|consen 810 LKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHG 885 (913)
T ss_pred HHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCC
Confidence 66654 5667777778888889999999999999999999999999999999999999999999998876643 5567
Q ss_pred eeEEEECC
Q 048812 529 YSLIEQGG 536 (645)
Q Consensus 529 ~s~i~~~~ 536 (645)
..|.-+..
T Consensus 886 ~~W~avSK 893 (913)
T KOG0495|consen 886 ELWQAVSK 893 (913)
T ss_pred cHHHHHhh
Confidence 78865443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-10 Score=112.98 Aligned_cols=355 Identities=12% Similarity=0.096 Sum_probs=229.0
Q ss_pred cCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHH
Q 048812 86 TGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMI 165 (645)
Q Consensus 86 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li 165 (645)
.|++.+ ++-+..+.+..++..||.+.++-...+.|.++|++-.. +.| +-+..++|.+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~------~k~-------------kv~~~aFN~lI 249 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA------AKG-------------KVYREAFNGLI 249 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH------hhh-------------eeeHHhhhhhh
Confidence 455544 55555666778899999999776555555555554321 111 24567888887
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHHc
Q 048812 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEM----GKNLHLFLEESTMKISGSLLNYLVDMYFKC 241 (645)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 241 (645)
.+-.- ....+++.+|....+.||..|||+++++.++.|+++. +.+++.+|.+.|++|...+|.-+|..+++.
T Consensus 250 ~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 250 GASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 65432 2337899999999999999999999999999998765 557889999999999999999999999998
Q ss_pred CCHHH-HHHHH----cccCC-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccC-CchhHHHHHHhhhccCCch
Q 048812 242 GKIGE-AQKLL----GRYEI-----DEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVER-NLISWTLMISGMLNQDAEF 309 (645)
Q Consensus 242 g~~~~-A~~~~----~~m~~-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~t~~~ll~~~~~~~~~~ 309 (645)
++..+ |..+. +.+.. ..| |..-|..-++.|.+..+.+-|.++-.-.... |..
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~---------------- 389 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK---------------- 389 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh----------------
Confidence 88754 33333 22111 112 5566777788888888888888776554411 110
Q ss_pred hhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 310 ~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
-.|....-...+......-....+++.-...|+.|.. |+..+-..++.+....|+++-.-+++.+|+..|
T Consensus 390 ------~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 390 ------FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 0011100001111111111112256677777777765 666777778888888999988888999988887
Q ss_pred CCCCHHHHHHHHHHHhccC---------cHHH-HHHHHHHhHHh--------cCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 048812 386 TKPDQVTFIALLSACSHGG---------LVDE-GYDFLSKKSRV--------YNIKPKMQHYGCMVDLLGRAGHLEESAN 447 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g---------~~~~-a~~~~~~~~~~--------~~~~p~~~~~~~li~~~~~~g~~~~A~~ 447 (645)
..-+...-.-++.-+++.. ++.. ..++...+.+. ...+-.....++..-++.|.|+.++|.+
T Consensus 464 ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 464 HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHH
Confidence 6555554444444444433 1111 11111111111 1123345667888899999999999999
Q ss_pred HHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 448 FITSM-------PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 448 ~~~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
++.-. +..|......-|+.+-.+.++...|..+++-+...+
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 88655 445555555567777778888888888888886644
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-11 Score=126.66 Aligned_cols=282 Identities=14% Similarity=0.096 Sum_probs=211.6
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHcCCHH-HHH
Q 048812 172 GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM--KISGSLLNYLVDMYFKCGKIG-EAQ 248 (645)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~-~A~ 248 (645)
-+..+|+.+|...... +.-+......+.++|...+++++++.+|+.+.+... --+..+|++.+--+-+.=.+. -|.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995544 333446777788999999999999999999987642 236777877765443322221 233
Q ss_pred HHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHH
Q 048812 249 KLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328 (645)
Q Consensus 249 ~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~ 328 (645)
.+.+. ..-...+|-++..+|.-+++.+.|++.|++..+-|.
T Consensus 412 ~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp------------------------------------ 452 (638)
T KOG1126|consen 412 DLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP------------------------------------ 452 (638)
T ss_pred HHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC------------------------------------
Confidence 44433 233678999999999999999999999998876553
Q ss_pred HHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHH
Q 048812 329 YIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVD 407 (645)
Q Consensus 329 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 407 (645)
....+|+-+..-+.....+|.|...|+..+. +.|. -..|..+...|.+.++++
T Consensus 453 ------------------------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 453 ------------------------RFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred ------------------------ccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhh
Confidence 3456676677777777888888888887765 3343 456677778888899999
Q ss_pred HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048812 408 EGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHL 484 (645)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~ 484 (645)
.|.-.|+++.+ +.|. .....++...+-+.|+.|+|++++++. ...| |+..--.-+..+...+++++|+..++++
T Consensus 507 ~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 507 FAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99988888773 7774 566677788888999999999999887 3333 4444444455567778999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 485 TETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 485 ~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++-|+++..|..++.+|-+.|+.+.|..-+.-+-+.+
T Consensus 584 k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 584 KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 99999999999999999999999999988877665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-09 Score=105.49 Aligned_cols=286 Identities=15% Similarity=0.157 Sum_probs=192.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHcCC
Q 048812 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM--KISGSLLNYLVDMYFKCGK 243 (645)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 243 (645)
.+|-...+.++++.=.......|++-+...-+....+.-...|+++|+.+|+.+.+... -.|..+|+.++-.--.+..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444445566666666666555544333333333334455666666666666666531 1244455554432222112
Q ss_pred HH-HHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 244 IG-EAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 244 ~~-~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
+. -|..+++- ..--+.|...+..-|+-.++.++|...|++..+-|
T Consensus 315 Ls~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN------------------------------- 360 (559)
T KOG1155|consen 315 LSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN------------------------------- 360 (559)
T ss_pred HHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------------------------------
Confidence 11 23344332 22233444445555555666666666666555443
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 402 (645)
+.....|+.|..-|....+...|++-|+...+- .+-|...|-.|.++|.-
T Consensus 361 -----------------------------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 361 -----------------------------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEI 410 (559)
T ss_pred -----------------------------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHH
Confidence 234577999999999999999999999999885 34478899999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~ 479 (645)
.+...-|.-+|++..+ ++| |...|.+|.+.|.+.+++++|.+.|... ....+...+..|...+-+.++.++|..
T Consensus 411 m~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred hcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999998874 677 5889999999999999999999999887 223355788899999999999999999
Q ss_pred HHHHHHh-------cCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 480 AFKHLTE-------TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 480 ~~~~~~~-------~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
.+++-++ .+|....+-.-|.+-+.+.+++++|.......
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9998887 23333334445778888999999998876554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-10 Score=117.78 Aligned_cols=292 Identities=11% Similarity=0.056 Sum_probs=176.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHH
Q 048812 170 SMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQ 248 (645)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 248 (645)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777666554 34332 333444556666777777777777665432222233444466677777777777
Q ss_pred HHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHH
Q 048812 249 KLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327 (645)
Q Consensus 249 ~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~ 327 (645)
..++.+....| +...+..+...+.+.|++++|.+++....+.+..+-..... +. ...+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~-------------------l~--~~a~ 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD-------------------LE--QKAE 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH-------------------HH--HHHH
Confidence 77777555555 55566777777777777777777777776432211100000 00 0000
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHh
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF---IALLSACS 401 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a~~ 401 (645)
......+......+...+.....++ .+...+..+...+...|+.++|.+++++..+. .||.... ........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhc
Confidence 0001111111123344444444443 47788888889999999999999999998875 3444321 11112233
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITS---MPIPPDVSIWSSLLRACRCHQNVKLAE 478 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~pd~~~~~~ll~a~~~~g~~~~a~ 478 (645)
..++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....||...+..+...+.+.|+.++|.
T Consensus 311 ~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45777778877777775433333325566777788888888888888883 355677777778888888888888888
Q ss_pred HHHHHHHh
Q 048812 479 HAFKHLTE 486 (645)
Q Consensus 479 ~~~~~~~~ 486 (645)
+++++.+.
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 88887655
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-10 Score=120.75 Aligned_cols=474 Identities=13% Similarity=0.091 Sum_probs=270.1
Q ss_pred ccCCchhHHhhhhccccCCChhhHHHHHhh-c--CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHh
Q 048812 21 RLGLVPKMRISRKFANVCPVSLDVIMVERS-C--SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR 97 (645)
Q Consensus 21 ~~~~~~~m~~~~~~~~~~p~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~ 97 (645)
...++..++.. |+.|+..||..++.. | |+.+.|- ++..|.-..++-+..+++.++......++.+.+.
T Consensus 9 ptnfla~~e~~----gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 9 PTNFLALHEIS----GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred cchHHHHHHHh----cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----
Confidence 33445556665 999999999888765 6 8888777 9999988877777888888888888888877665
Q ss_pred hCCCCCcccHHHHHHHHHHcCChhH---HHHHHHHHhhc-------------------------C-----chhhccCChH
Q 048812 98 QGDEPEIKIWNSIIENQLINGYPQE---VFAIYLYLVTR-------------------------T-----VLLNKCGKLK 144 (645)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~-------------------------~-----~~~~~~g~~~ 144 (645)
.|...+|+.+..+|.+.|+... ..+.+.....+ + ....-.|.++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 6777788999999988888654 22212222210 0 1111122333
Q ss_pred HHHHHHccCC----------------------------------CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 048812 145 EVCQLFDKLP----------------------------------NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS 190 (645)
Q Consensus 145 ~A~~~f~~m~----------------------------------~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~ 190 (645)
.+.+++..+| .++..+|.+++.+-.-+|+.+.|..++.+|++.|++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3333333222 156667777777777777777777777778777777
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHH
Q 048812 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270 (645)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~ 270 (645)
.+.+-|-.+|-+ .++...+..+..-|...|+.|+..|+..-+-...+.|....+....+. ...-....+..+..+
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~--~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL--AHGFTAAVRSAACRG 311 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch--hhhhhHHHHHHHhcc
Confidence 777766666644 666777777777777777777777777666655555543332222221 111112222222222
Q ss_pred HHhcCCHHHHHHHHHhcccCCc--hhHHHHHHhhhccCCchhhhhhccc---cchhhHHHHHHHHHHcCCCCC------c
Q 048812 271 YVKSNERDEARRLFDEMVERNL--ISWTLMISGMLNQDAEFKYKSCASI---GALYHGIWVHVYIKKNQISID------N 339 (645)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~~~~~--~t~~~ll~~~~~~~~~~~~~a~~~~---~~l~~g~~i~~~~~~~~~~~~------~ 339 (645)
..|.+.++.-..+-+ .+-..++.|+-... ..++-|..+ |.-+...++-+.+...-+... .
T Consensus 312 -------~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~--aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 312 -------LLANKRLRQNLRKSVIGSTKKLFLLGTDILE--AIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred -------cHhHHHHHHHHHHHHHHHhhHHHHhccccch--HHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 222222221110000 00001111111000 000222111 222223333333332221111 2
Q ss_pred HHHHHHHHhhcCcCChh-HHHHHHHHHHH---cCCHHHHHHHHHHHHH----------------cCCCC-------CHHH
Q 048812 340 IELAYDLFSEISEKNVY-LWTSVIAAYAM---AGHAQKAIDLFLEMEE----------------TGTKP-------DQVT 392 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~----------------~g~~p-------d~~t 392 (645)
-+.+.+.|.+...++.. .++ .-.+... ..+..+..++....+. .-..| -...
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 23456667666655432 222 2222222 1122222222221110 00111 1122
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHH
Q 048812 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP-----IPPDVSIWSSLLRA 467 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~pd~~~~~~ll~a 467 (645)
-+.++..|++.-+..++...-+... ++-+ .-.|..||+.+....++++|..+.++.. +.-|..-+..+.+-
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 3455566666666666654433333 2111 2678999999999999999999999873 34566778889999
Q ss_pred HHhcCChHHHHHHHHHHHhc---CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 048812 468 CRCHQNVKLAEHAFKHLTET---DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525 (645)
Q Consensus 468 ~~~~g~~~~a~~~~~~~~~~---~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 525 (645)
..+++....+..+++++.+. .|.......-+.+.-+..|+.+...++.+-+...|+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999872 24334555667888888999999999999999988765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.6e-09 Score=109.41 Aligned_cols=427 Identities=16% Similarity=0.155 Sum_probs=266.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHh---hCCCCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIR---QGDEPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
|++++|..+...+++.. +.....|..|-..|-..|+.+++...+- +..+.|...|-.+..-..+.|.+.+|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 89999999999999987 5677889999999999999999987764 3456677889999999999999999999999
Q ss_pred HHhhcC-----------chhhccCChHHHHHHHccCCC--C---------------------------------------
Q 048812 129 YLVTRT-----------VLLNKCGKLKEVCQLFDKLPN--R--------------------------------------- 156 (645)
Q Consensus 129 ~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~--~--------------------------------------- 156 (645)
++++.+ .+|-+.|+...|..-|.++-+ |
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 998854 677778887777766665532 1
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----------------------hhhHH----HHHHHHhcCC
Q 048812 157 ---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD----------------------EVTMV----SLISARTKLR 207 (645)
Q Consensus 157 ---~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------------~~t~~----~ll~~~~~~~ 207 (645)
+...+|.++..|.+...++.|+.....+.....++| ...|. -+.-++...+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 112344455555555555666555555544111111 11111 1112233444
Q ss_pred ChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 048812 208 DLEMGKNLHLFLEEST--MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV--DVVLWTTLVSGYVKSNERDEARRL 283 (645)
Q Consensus 208 ~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--~~~~~~~li~~~~~~g~~~~A~~~ 283 (645)
..+....+.....+.. +.-++..+.-+.++|...|++.+|.++|..+...++ +...|--+..+|...|.+++|++.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 4455555555555555 334566777888888899999999998887543333 567888888999999999999999
Q ss_pred HHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCCh--------
Q 048812 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNV-------- 355 (645)
Q Consensus 284 ~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~-------- 355 (645)
|+.....++.++..-++ ++... ...++.++|.+.+..+..||.
T Consensus 472 y~kvl~~~p~~~D~Ri~-------------------------Lasl~----~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARIT-------------------------LASLY----QQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHhcCCCchhhhhh-------------------------HHHHH----HhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 88887433322222220 00000 112367788888887766552
Q ss_pred ----hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-----------------CHHHHHHHHHHHhccCcHHHH
Q 048812 356 ----YLWTSVIAAYAMAGHAQKAIDLFLEMEETG-----TKP-----------------DQVTFIALLSACSHGGLVDEG 409 (645)
Q Consensus 356 ----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p-----------------d~~t~~~ll~a~~~~g~~~~a 409 (645)
..--.....|.+.|+.++=+..-.+|...+ +-| ...+...++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 112233456777888877666666665432 111 111222222222222221111
Q ss_pred HHHHH-----HhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHhcCCh
Q 048812 410 YDFLS-----KKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSMP-----IPPDV---SIWSSLLRACRCHQNV 474 (645)
Q Consensus 410 ~~~~~-----~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~pd~---~~~~~ll~a~~~~g~~ 474 (645)
.+... ......++.-+ -..+.-++..+++.+++++|+.+...+- ..++. ..=...+.++...+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 11000 01111223222 2345678889999999999999988762 22222 1234455667788999
Q ss_pred HHHHHHHHHHHhc-----CCCCchhHHHHHHHHHHcCCc
Q 048812 475 KLAEHAFKHLTET-----DPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 475 ~~a~~~~~~~~~~-----~p~~~~~y~~l~~~~~~~g~~ 508 (645)
..|....+.++.. +|.-...|++..+...+.|+-
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR 721 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886 666666677666666665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-10 Score=115.89 Aligned_cols=286 Identities=10% Similarity=0.043 Sum_probs=151.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHcCCHHHHH
Q 048812 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS--LLNYLVDMYFKCGKIGEAQ 248 (645)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~ 248 (645)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.+.+.+..+.+. .|+.. ........+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777666654432111 223333344446777788888877777664 33332 2223356777788888888
Q ss_pred HHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHH
Q 048812 249 KLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327 (645)
Q Consensus 249 ~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~ 327 (645)
..++.+....| +......+...|.+.|++++|.+++..+.+....+-...-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~---------------------------- 225 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA---------------------------- 225 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH----------------------------
Confidence 88877555555 5666777778888888888888888777644332100000
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD 407 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 407 (645)
++ -..+|..++.......+.+...++++...+. .+.+......+..++...|+.+
T Consensus 226 -----------------~l-------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 226 -----------------ML-------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred -----------------HH-------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 00 0001222222222223333334444443221 2234445555555555555555
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048812 408 EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLT 485 (645)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 485 (645)
+|.+++++..+ ..|+.... ++.+....++.+++.+.+++. ...| |+..+.++...|...+++++|.+.|++++
T Consensus 281 ~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555442 12232111 111122335555555555554 2233 33445556666666666666666666666
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 486 ~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+..|++ ..|..|..++.+.|+.++|.+++++-
T Consensus 356 ~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 356 KQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred hcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666654 44556666666666666666666544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.1e-11 Score=121.14 Aligned_cols=183 Identities=16% Similarity=0.191 Sum_probs=156.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
....+|-++...|.-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..++.+|++
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnA 491 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNA 491 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHH
Confidence 4578999999999999999999999999987 566 57888888888888899999999998766 456667765
Q ss_pred ---HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 432 ---MVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 432 ---li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
|.-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.|+|+.+++++..++|.++-.-+..+.++...+
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 556799999999999999987 6777 56677888888999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHc
Q 048812 507 RLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568 (645)
Q Consensus 507 ~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~ 568 (645)
++++|.+.++++++. -|+-.-++..+.++.++|...
T Consensus 572 ~~~eal~~LEeLk~~--------------------------vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 572 RYVEALQELEELKEL--------------------------VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred chHHHHHHHHHHHHh--------------------------CcchHHHHHHHHHHHHHHccc
Confidence 999999999999872 245555677777777777644
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-09 Score=107.34 Aligned_cols=386 Identities=13% Similarity=0.101 Sum_probs=237.0
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCC-cccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhhccCChHH
Q 048812 80 FEFLVFTGDLGYAQQIIRQGD--EPE-IKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLNKCGKLKE 145 (645)
Q Consensus 80 l~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~g~~~~ 145 (645)
-+-|-+.|.+++|++.+.... .|| .+-|.....+|...|+++++++.-.+.++.+ ..+-..|++++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 345778899999999999875 577 7779999999999999999999988888866 22233455555
Q ss_pred HHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH---------HhhCC--CCCChhhHHHHHHHHhcCCChHHHHH
Q 048812 146 VCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK---------MGAEG--VSPDEVTMVSLISARTKLRDLEMGKN 214 (645)
Q Consensus 146 A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~---------m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~ 214 (645)
|.. -+|-.++..++..+.-..-+.+++++ |.+.+ +-|+.....+....+...-..
T Consensus 202 al~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~----- 267 (606)
T KOG0547|consen 202 ALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP----- 267 (606)
T ss_pred HHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc-----
Confidence 532 23445555555554443344444433 22112 335555444544443221000
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcC-CHHHHHHHHcc--------cCCCCCChh------hHHHHHHHHHhcCCHHH
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCG-KIGEAQKLLGR--------YEIDEVDVV------LWTTLVSGYVKSNERDE 279 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~--------m~~~~~~~~------~~~~li~~~~~~g~~~~ 279 (645)
.+...+-..|...-..+=..|.... .+..|...+.+ ....+.|.. +...-..-+.-.|+.-.
T Consensus 268 ---~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 268 ---LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ---cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 0000000111111111111111100 12222222111 000011111 11111122334566677
Q ss_pred HHHHHHhcccCCc--hh-HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cC
Q 048812 280 ARRLFDEMVERNL--IS-WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EK 353 (645)
Q Consensus 280 A~~~~~~m~~~~~--~t-~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~ 353 (645)
|...|+.....+. .. |--+-..|.+. ++-++-++.|+... ..
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~--------------------------------~~~~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADE--------------------------------NQSEKMWKDFNKAEDLDPE 392 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhh--------------------------------hccHHHHHHHHHHHhcCCC
Confidence 7777776653222 11 22222223222 24455555555443 34
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
|..+|..-...+.-.+++++|+.=|++.+. +.|+ ...|.-+-.+..+.+.++++...|++.+++ +..-+++|+-.
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~f 468 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLF 468 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHH
Confidence 667787777888888999999999999887 4554 567777777778899999999999999975 44457889999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPPD---------VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~pd---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
...+...+++++|.+.++.. .+.|+ +.+-.+++-.-.+ +|+..|+.+++++++++|....+|..|..+-
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 99999999999999999875 44443 2233333333233 8999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHH
Q 048812 503 AKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~ 519 (645)
...|+.++|+++|++-.
T Consensus 548 lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999999998753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-09 Score=113.58 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=206.9
Q ss_pred ccCChHHHHHHHccCCCC--C-cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHH--HHHHHHhcCCChHHHH
Q 048812 139 KCGKLKEVCQLFDKLPNR--D-VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV--SLISARTKLRDLEMGK 213 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~~--~-~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~ 213 (645)
-.|+++.|++.+...++. + ...|-.......+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 358888888888876643 2 233333344557899999999999999875 56654333 3356778899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-Chh--------hHHHHHHHHHhcCCHHHHHHHH
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVV--------LWTTLVSGYVKSNERDEARRLF 284 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~--------~~~~li~~~~~~g~~~~A~~~~ 284 (645)
+.++.+.+.. +.++.+...+...|.+.|++++|.+++..+..... +.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999887 66788899999999999999999999988543322 111 2222222222222233333333
Q ss_pred HhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHH
Q 048812 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~ 364 (645)
+...+. .+.+......+..+
T Consensus 253 ~~lp~~------------------------------------------------------------~~~~~~~~~~~A~~ 272 (398)
T PRK10747 253 KNQSRK------------------------------------------------------------TRHQVALQVAMAEH 272 (398)
T ss_pred HhCCHH------------------------------------------------------------HhCCHHHHHHHHHH
Confidence 332210 02466778889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 443 (645)
+...|+.++|..++++..+. .||... .++.+....++.+++.+..+...+. .| |...+.++..++.+.|+++
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999998874 555522 2334444669999999999988864 45 4667889999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 444 ESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 444 ~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
+|.+.|+.. ...|+...+..|...+...|+.++|..++++.+.+-
T Consensus 346 ~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 346 EASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999987 778999999999999999999999999999998743
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-09 Score=103.41 Aligned_cols=377 Identities=10% Similarity=0.070 Sum_probs=270.0
Q ss_pred cCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 048812 140 CGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216 (645)
Q Consensus 140 ~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (645)
.+++..|+.+|++... +++..|---+..=.++.+...|..++++.+..=...|.. |--.+-.=...|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 4566778888887653 677788888888888999999999999887652222332 333333445678999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhccc--CCchh
Q 048812 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNLIS 294 (645)
Q Consensus 217 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~t 294 (645)
..-.+. +|+...|++.|+.=.+-..++.|+.++++..+..|++.+|--...-=-++|...-|..+|+...+ .|...
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 887754 79999999999999999999999999999888899999998888888889999999998887652 12111
Q ss_pred HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC-------------------cHHHHHH-----HHhhc
Q 048812 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID-------------------NIELAYD-----LFSEI 350 (645)
Q Consensus 295 ~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~-------------------~~~~A~~-----~f~~~ 350 (645)
-..+..+|++ --......+.++.++.+.+..--... .++++.- -++.+
T Consensus 243 ~e~lfvaFA~--------fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 243 AEILFVAFAE--------FEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 2222222221 11122234445555555554432221 2222221 12222
Q ss_pred Cc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hccCcHHHHHHHHHHhH
Q 048812 351 SE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-------VTFIALLSAC---SHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 351 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~ 417 (645)
.. -|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=.+| ....+++.+.++++...
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22 25567888888888889999999999999875 66632 1233332333 35688999999999888
Q ss_pred HhcCCCCC-hHHHHHHHHHH----HHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 418 RVYNIKPK-MQHYGCMVDLL----GRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 418 ~~~~~~p~-~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
+ +.|. ..++.-+--+| .|+.++..|.+++... |.-|...++...|.--.+.++++....++++.++..|.+
T Consensus 394 ~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 394 D---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred h---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 4 5564 55555554444 5788999999999775 788999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 492 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
..++.-.+..-...|+++.|..+++...++...-.|..-|
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999999999999887766444444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-12 Score=90.37 Aligned_cols=50 Identities=38% Similarity=0.624 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (645)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-12 Score=88.93 Aligned_cols=50 Identities=32% Similarity=0.600 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 402 (645)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-08 Score=98.83 Aligned_cols=398 Identities=12% Similarity=0.113 Sum_probs=300.7
Q ss_pred HHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-------chhhccCChHHHHHHHccCCC---CCc
Q 048812 92 AQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-------VLLNKCGKLKEVCQLFDKLPN---RDV 158 (645)
Q Consensus 92 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~g~~~~A~~~f~~m~~---~~~ 158 (645)
=.+++.+.. +.++..|-..+ .....+.|+-++.+..+.. ..|++..-++.|.+++++..+ .+.
T Consensus 365 K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~ 440 (913)
T KOG0495|consen 365 KKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDR 440 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCh
Confidence 345555543 34555675544 4456777888998888743 567788888999999887653 577
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHH----HhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--chhHHH
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSK----MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI--SGSLLN 232 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~ 232 (645)
..|-+-...=-++|+.+...++..+ +...|+..|...|..=..+|-..|..-.+..+....+..|++. -..+|+
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 7888777777788998888887765 4567999999999998899999999999999999888888754 346788
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhccc--CCc-hhHHHHHHhhhccCCc
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVE--RNL-ISWTLMISGMLNQDAE 308 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~t~~~ll~~~~~~~~~ 308 (645)
.-...+.+.+.++-|+.+|.......| +...|...+..=-..|..++-..+|++... |.. +-|-.
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM----------- 589 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLM----------- 589 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHH-----------
Confidence 888899999999999999987433344 677888888877788999999999988762 222 11211
Q ss_pred hhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 309 FKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 309 ~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
..+.....+++..|+.++...-+ .+...|-+-+.....+..+++|..+|.+...
T Consensus 590 ---------------------~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 590 ---------------------YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred ---------------------HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 11222222355566655554433 3567788888888899999999999998876
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHH
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWS 462 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~ 462 (645)
..|+...|.--+..-.-.+++++|.+++++..+. -|+ ...|-.+.+.+-+.++++.|.+.+..- . .+-.+..|-
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl 723 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL 723 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH
Confidence 5677777777676677788999999999888864 354 567888888999999999999888764 3 334567898
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEE
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLI 532 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 532 (645)
.|..-=-+.|++-+|..++++..-.+|.++..|...+.+-.+.|+.+.|..+..+..+.- |..|.-|.
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 888888888999999999999999999999999999999999999999998877665432 33455554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-08 Score=97.02 Aligned_cols=179 Identities=11% Similarity=0.097 Sum_probs=140.3
Q ss_pred hhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhh
Q 048812 73 PQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLN 138 (645)
Q Consensus 73 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~ 138 (645)
...|-.-..-=-..+++..|+.+|++.. .++...|---+..=.++.....|..++++.+..- .|--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3334333333345678889999999876 5677889888888899999999999999887732 3444
Q ss_pred ccCChHHHHHHHccCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 048812 139 KCGKLKEVCQLFDKLP--NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLH 216 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~--~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (645)
..|++..|+++|++-. +|+..+|++.|..=.+....+.|..+|++.+-. .|+..+|.-..+-=.+.|....+.+++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6799999999999854 699999999999999999999999999998864 599999988888888899999999999
Q ss_pred HHHHHh-CC-CCchhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 217 LFLEES-TM-KISGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 217 ~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
..+++. |- ..+...+.+....=.++..++.|.-+|.-
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988764 21 12334555555555667778888888764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-08 Score=102.08 Aligned_cols=427 Identities=12% Similarity=0.030 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhh--CCCCCcccHHHHHHHHHHcCChhHHHHHHHHHh
Q 048812 54 IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQ--GDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131 (645)
Q Consensus 54 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (645)
...|.-+-+.+...+ -|+.-.--+..+|.-.|+++.|..+... +...|..+.......+.+...+++|+.++....
T Consensus 32 y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~ 109 (611)
T KOG1173|consen 32 YKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGH 109 (611)
T ss_pred hhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333444444443333 4455555566777777778777777653 456777777777777777788888887777321
Q ss_pred hc------------------------------------CchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhc-CCh
Q 048812 132 TR------------------------------------TVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSM-GMY 174 (645)
Q Consensus 132 ~~------------------------------------~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~-g~~ 174 (645)
.. +..|......+.|+..|.+....|+..+.++..--... =-.
T Consensus 110 ~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~ 189 (611)
T KOG1173|consen 110 VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA 189 (611)
T ss_pred hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch
Confidence 10 03333344455555555544433443333322111100 000
Q ss_pred HHHHHHHHHHhhC-CCCCChhhHHHHHHHH-hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHc
Q 048812 175 REGLGLLSKMGAE-GVSPDEVTMVSLISAR-TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLG 252 (645)
Q Consensus 175 ~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 252 (645)
.+-.++|..+--. -..-+....-.+.... ++..+.+ ....-....-.+..-+..+.-...+-+...+++.+..++++
T Consensus 190 ~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~ 268 (611)
T KOG1173|consen 190 QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITE 268 (611)
T ss_pred hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhH
Confidence 1111122110000 0000111111111110 0000000 00000000001223344444555555666677777777766
Q ss_pred ccCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHhccc--C-CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHH
Q 048812 253 RYEIDE-VDVVLWTTLVSGYVKSNERDEARRLFDEMVE--R-NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHV 328 (645)
Q Consensus 253 ~m~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~ 328 (645)
.+.... +....+..-|.++...|+..+-..+=.++.+ | ..++|-++--.|.-.|
T Consensus 269 ~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~---------------------- 326 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG---------------------- 326 (611)
T ss_pred HHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc----------------------
Confidence 632222 2444555556666666666555555455542 2 3455554443333222
Q ss_pred HHHHcCCCCCcHHHHHHHHhhcCcC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 048812 329 YIKKNQISIDNIELAYDLFSEISEK---NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405 (645)
Q Consensus 329 ~~~~~~~~~~~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 405 (645)
...+|++.|.....- =...|-.....|+-.|..++|+..|...-+. ++-....+.-+..-|...+.
T Consensus 327 ----------k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 327 ----------KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred ----------CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 566777777654432 2467999999999999999999988876653 22233334444556888999
Q ss_pred HHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCC--------CC-CCHHHHHHHHHHHHhcCChH
Q 048812 406 VDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSMP--------IP-PDVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~-pd~~~~~~ll~a~~~~g~~~ 475 (645)
.+.|.++|.+.. ++.| |+...+-+.-.....+.+.+|..+|+..- -. ....+|+.|..+|++.+.++
T Consensus 396 ~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 396 LKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred HHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 999999998876 5777 46777777777778899999999988751 11 24567899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+|+..+++.+.+.|.++.+|.+++-+|...|+++.|...+.+..
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=122.49 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=102.5
Q ss_pred hHHHHHHhcCChHHHHHHHhhC-C----CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHcc
Q 048812 78 QVFEFLVFTGDLGYAQQIIRQG-D----EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDK 152 (645)
Q Consensus 78 ~ll~~~~~~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~ 152 (645)
.+..++.+.|++++|.+++++. . +.|..-|..+....... ++.+.|...+++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-----------------------~~~~~A~~ay~~ 69 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-----------------------GDYDEAIEAYEK 69 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------------cccccccccccc
Confidence 5577788889999999999543 2 22444455544444334 445555555555
Q ss_pred CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCch
Q 048812 153 LPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEEST-MKISG 228 (645)
Q Consensus 153 m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 228 (645)
+.. -+...+..++.. ...+++++|++++.+..+. .++...+..++..+...++++.+.+++..+.... .+.+.
T Consensus 70 l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 70 LLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred cccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 543 234456666666 6888999999988877655 3566667778888888899999998888876533 35677
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCC
Q 048812 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307 (645)
Q Consensus 229 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~ 307 (645)
..+..+...|.+.|+.++|.+.|++.....| |...++.++..+...|+.+++.++++...+..
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---------------- 210 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---------------- 210 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----------------
Confidence 8888888889999999999999988544456 56778888888888888888777776543221
Q ss_pred chhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048812 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387 (645)
Q Consensus 308 ~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 387 (645)
+.|...|..+..+|...|++++|+.+|++.... .+
T Consensus 211 --------------------------------------------~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 211 --------------------------------------------PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp --------------------------------------------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred --------------------------------------------cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 245566788888999999999999999998875 23
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
.|..+...+..++...|+.++|.++.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 467778888889999999999998877655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-09 Score=103.56 Aligned_cols=200 Identities=14% Similarity=0.123 Sum_probs=162.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
....+..+...+...|++++|.+.|++..+.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------ 61 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD------------------------------------------------ 61 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 34567777888888888888888887764322
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
+.+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++...+.
T Consensus 62 ------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 62 ------------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred ------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 2245667788889999999999999999988763 335667778888899999999999999998853
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
.........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++..|.++..+..
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 208 (234)
T TIGR02521 129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWL 208 (234)
T ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 222224567778888999999999999999886 3334 46688889999999999999999999999998888888889
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
++.++...|++++|..+.+.+..
T Consensus 209 ~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 209 GIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-09 Score=111.86 Aligned_cols=252 Identities=14% Similarity=0.017 Sum_probs=174.3
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHHcCCHHHHHHHHcccCCCCCCh--hhHHHHHHHHHhcCCHHHHH
Q 048812 205 KLRDLEMGKNLHLFLEESTMKISGSL-LNYLVDMYFKCGKIGEAQKLLGRYEIDEVDV--VLWTTLVSGYVKSNERDEAR 281 (645)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~~~li~~~~~~g~~~~A~ 281 (645)
..|+++.|++......+.. |++.. +-....++.+.|+.+.|.+.|.+.....|+. ...-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4688999998887776653 33332 3334567778899999999988743334543 23334577778889999998
Q ss_pred HHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHH
Q 048812 282 RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSV 361 (645)
Q Consensus 282 ~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~l 361 (645)
..++.+.+.+ +.+...+..+
T Consensus 174 ~~l~~l~~~~------------------------------------------------------------P~~~~~l~ll 193 (409)
T TIGR00540 174 HGVDKLLEMA------------------------------------------------------------PRHKEVLKLA 193 (409)
T ss_pred HHHHHHHHhC------------------------------------------------------------CCCHHHHHHH
Confidence 8888876443 2345567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCcHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHH
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC---SHGGLVDEGYDFLSKKSRVYN--IKPKMQHYGCMVDLL 436 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~ 436 (645)
...|.+.|++++|.+++.+..+.++.+.......-..+. ...+..+++.+.+..+.+... ...+...+..++..+
T Consensus 194 ~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 194 EEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 889999999999999999999886543322211111221 223333334445555553211 113788889999999
Q ss_pred HHcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHcCCchH
Q 048812 437 GRAGHLEESANFITSM-PIPPDVSI---WSSLLRACRCHQNVKLAEHAFKHLTETDPLND--GAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m-~~~pd~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~--~~y~~l~~~~~~~g~~~~ 510 (645)
...|+.++|.+++++. ...||... ...........++.+.+++.+++.++..|+++ ....+++.+|.+.|+|++
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred HHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHH
Confidence 9999999999999887 44565542 11222223345788999999999999999998 778899999999999999
Q ss_pred HHHHHHHH
Q 048812 511 MSRIRMKL 518 (645)
Q Consensus 511 a~~~~~~m 518 (645)
|.+.++..
T Consensus 354 A~~~le~a 361 (409)
T TIGR00540 354 AADAFKNV 361 (409)
T ss_pred HHHHHHHh
Confidence 99999853
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-08 Score=95.41 Aligned_cols=310 Identities=15% Similarity=0.134 Sum_probs=181.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHHcCCHHHH
Q 048812 171 MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI---SGSLLNYLVDMYFKCGKIGEA 247 (645)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 247 (645)
+.++++|+++|-+|.+.. +-+..+-.+|-+-+-+.|..+.|..+|+.+.++.--+ -......|..=|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578899999999999852 2233456678888889999999999999998753111 123445577889999999999
Q ss_pred HHHHcccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHH
Q 048812 248 QKLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWV 326 (645)
Q Consensus 248 ~~~~~~m~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i 326 (645)
+.+|..+.. .+--.....-|+..|-...+|++|++.-++..+-+.-+++.-|. +.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------qf 182 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------QF 182 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH------------------------HH
Confidence 999998432 12245567779999999999999999998887666656555552 33
Q ss_pred HHHHHHcCCCCCcHHHHHHHHhhcCcCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048812 327 HVYIKKNQISIDNIELAYDLFSEISEKN---VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403 (645)
Q Consensus 327 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 403 (645)
++.+.......++.+.|..++.+....| +..--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 3344444444445555555555444322 1222223345555666666666666665543222234455555566666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048812 404 GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKH 483 (645)
Q Consensus 404 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~ 483 (645)
|+.+++..++..+.+ ..+....-..|.+.-....- .+.|...+.+
T Consensus 263 g~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G--------------------------------~~~Aq~~l~~ 307 (389)
T COG2956 263 GKPAEGLNFLRRAME---TNTGADAELMLADLIELQEG--------------------------------IDAAQAYLTR 307 (389)
T ss_pred CCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhC--------------------------------hHHHHHHHHH
Confidence 666666666655553 23333333333333333333 3334444444
Q ss_pred HHhcCCCCchhHHHHHHHH---HHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEE
Q 048812 484 LTETDPLNDGAHVLLANIY---AKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKF 541 (645)
Q Consensus 484 ~~~~~p~~~~~y~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 541 (645)
-+...|.- ..+..|++.- +..|++.+...+++.|....++..|.+.--.-+-..|.|
T Consensus 308 Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 308 QLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred HHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 44444432 2222233322 123456666777777766666666655443333334444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-08 Score=97.74 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCM 432 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 432 (645)
..|-..+.+-|+-.++.++|+..|++..+. .|. ...|+.+..-|....+...|.+-++.+++ +.| |-..|-.|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGL 404 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGL 404 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhh
Confidence 345556667788889999999999999885 454 56777778899999999999999999884 666 67899999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
.++|.-.+...=|+-.|++. ..+| |...|.+|...|.+.++.++|++.|+++...+-.+...|+.|+++|.+.++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999998 5666 788999999999999999999999999999887788999999999999999999
Q ss_pred HHHHHHHHHh
Q 048812 511 MSRIRMKLRD 520 (645)
Q Consensus 511 a~~~~~~m~~ 520 (645)
|...+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-08 Score=93.54 Aligned_cols=296 Identities=9% Similarity=0.008 Sum_probs=176.0
Q ss_pred HHHHHHHh--cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 048812 163 TMISCYTS--MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240 (645)
Q Consensus 163 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 240 (645)
.+..|..+ .|+|..|.++..+-.+.+-.| ...|.....+--..||.+.+-+...++.+.--.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 577888888887766665433 345555666667778888888887777766445666666677777777
Q ss_pred cCCHHHHHHHHcccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccc
Q 048812 241 CGKIGEAQKLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 241 ~g~~~~A~~~~~~m~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
.|+.+.|..-.+++.. ...+.........+|.+.|++.+...++.+|.+.+..+-.-+..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~------------------- 226 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR------------------- 226 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-------------------
Confidence 8888877776665432 33467777778888888888888888888887555432111110
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 396 (645)
.-.+...-+.+.....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|+.. .
T Consensus 227 --le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~ 300 (400)
T COG3071 227 --LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----R 300 (400)
T ss_pred --HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----H
Confidence 0000000000000011111222223333332 234455566667777777777777777777766666522 2
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChH
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~ 475 (645)
+-.+.+.++.+.=.+..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+.|+.+
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 2345555666555555555554444444 55666666777777777777777654 56667777777777777777777
Q ss_pred HHHHHHHHHHh
Q 048812 476 LAEHAFKHLTE 486 (645)
Q Consensus 476 ~a~~~~~~~~~ 486 (645)
+|.++.++.+.
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 77777666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-09 Score=111.94 Aligned_cols=242 Identities=16% Similarity=0.127 Sum_probs=161.1
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCC
Q 048812 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE 258 (645)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 258 (645)
.++-.|...|+.||.+||.++|.-|+..|+++.|- +|..|.-..++.+..+++.++.+....++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 45667777888888888888888888888888887 8888887777888888888888888777765443 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHh-cccCCchhHHHHHHhhhccC-----Cchhh---------hhhccccchhhH
Q 048812 259 VDVVLWTTLVSGYVKSNERDEARRLFDE-MVERNLISWTLMISGMLNQD-----AEFKY---------KSCASIGALYHG 323 (645)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~t~~~ll~~~~~~~-----~~~~~---------~a~~~~~~l~~g 323 (645)
|...+|+.|..+|.+.|+... ++..++ |. .+...+..+| +.|-. +...+.-.+..-
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe--------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLE--------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHH--------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 667788888888888887654 222222 11 0000011111 00000 000011111111
Q ss_pred HHHHHHHHHc--------------------CCCCCcHHHHHHHHhhcCc-CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048812 324 IWVHVYIKKN--------------------QISIDNIELAYDLFSEISE-KNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382 (645)
Q Consensus 324 ~~i~~~~~~~--------------------~~~~~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 382 (645)
+.+.+.+++. -.....+++-...-..... ++..+|.+.+..-...|+.+.|..++.+|.
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2222222222 2222234444433333333 889999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 048812 383 ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 383 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 443 (645)
+.|++.+..-|-.||-+ .++...+..+.+.|. ..|+.|+.+|+.-.+-.+...|...
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcchhhh
Confidence 99999998888888866 778878888888777 7899999999988877777755533
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-08 Score=94.00 Aligned_cols=394 Identities=13% Similarity=0.168 Sum_probs=262.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhcC-------------chhhccCChHHHHHHHc----cCCCCC----cchHHHHHHH
Q 048812 109 SIIENQLINGYPQEVFAIYLYLVTRT-------------VLLNKCGKLKEVCQLFD----KLPNRD----VISWNTMISC 167 (645)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~~g~~~~A~~~f~----~m~~~~----~~~~n~li~~ 167 (645)
.+..-|.-+....+|+..|+-+++.. +.|.+...+.+|.+.++ +.|.-+ +-..|.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34556666777889999998887732 67778888999998775 333222 2345566667
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------------CchhHHHHHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK------------ISGSLLNYLV 235 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~li 235 (645)
+.+.|+++.|+..|+...+. .||-.+-..|+-++...|+.++.++.|..++..... |+....|--|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999988776 688877666666667789999999999999865322 3333333222
Q ss_pred -----HHHHHcCCHHHHHHHH-cccCC----CCCChh---hHH------------------HHHHHHHhcCCHHHHHHHH
Q 048812 236 -----DMYFKCGKIGEAQKLL-GRYEI----DEVDVV---LWT------------------TLVSGYVKSNERDEARRLF 284 (645)
Q Consensus 236 -----~~y~~~g~~~~A~~~~-~~m~~----~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~ 284 (645)
.-.-+... ..|.+.. -..+. ..||-. -|. .-...|.++|+++.|++++
T Consensus 364 ~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11222221 1222211 11101 122210 111 1223578999999999999
Q ss_pred HhcccCCchhHHHHHH-----hhhccCCchhhhhhccccchhhHHHHHHHH------------HHc--CCCCCcHHHHHH
Q 048812 285 DEMVERNLISWTLMIS-----GMLNQDAEFKYKSCASIGALYHGIWVHVYI------------KKN--QISIDNIELAYD 345 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~-----~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~------------~~~--~~~~~~~~~A~~ 345 (645)
+-..+.|..|-+..-. .|.+.| .++..+.+.-... -+. .+..+++++|.+
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqgg-----------k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGG-----------KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcc-----------cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 8887666554333221 222222 1122222221111 111 123449999999
Q ss_pred HHhhcCcCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 048812 346 LFSEISEKNVYLWTSV---IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422 (645)
Q Consensus 346 ~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 422 (645)
.|.+....|...-.+| .-.+-..|+.++|++.|-++..- +..+...+..+.+.|-...+..+|++++-+... +
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s---l 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS---L 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---c
Confidence 9998887776543333 33567789999999999887654 445677888888999999999999999877663 4
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 423 KP-KMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 423 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
.| |+.+.+.|.++|-+.|+-..|.+..-+- . ++-+..+..=|..-|....-.++++..|+++--+.|+-+.--..+.
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA 667 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 55 6899999999999999999999875443 3 3335555555666677777889999999999999997644334455
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 048812 500 NIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~ 520 (645)
.++.+.|++..|..+++..-.
T Consensus 668 sc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 667789999999999988754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=111.30 Aligned_cols=262 Identities=12% Similarity=-0.022 Sum_probs=182.9
Q ss_pred hhhHHHHHHHHhc-----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH---------cCCHHHHHHHHcccCCCC
Q 048812 193 EVTMVSLISARTK-----LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK---------CGKIGEAQKLLGRYEIDE 258 (645)
Q Consensus 193 ~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~~~ 258 (645)
...|...+++-.. .+++++|.+.+.++++.. +.+...+..+..+|.. .+++++|...+++.....
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 3445555555321 234678888888888764 3345556555555442 244788988888754455
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCC
Q 048812 259 V-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337 (645)
Q Consensus 259 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~ 337 (645)
| +...|..+...+...|++++|...|++..+.+.
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--------------------------------------------- 369 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP--------------------------------------------- 369 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------------------------------------
Confidence 5 677888888888899999999999988764332
Q ss_pred CcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 048812 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-VTFIALLSACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 338 ~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 416 (645)
.+...|..+...|...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++++
T Consensus 370 ---------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 370 ---------------ISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred ---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34556788888999999999999999999885 4543 23334444566689999999999988
Q ss_pred HHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 417 SRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVS-IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 417 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
.+. ..|+ ...+..+...|...|++++|...++++ +..|+.. .++.+...+...| +.|...++++++..-..+.
T Consensus 433 l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 742 2353 556777888999999999999999987 4455544 4555555667777 4888888888773322222
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 494 AHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 494 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.+..+..+|+-.|+-+.+..+ +++.+.|
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 233377778888888877777 7776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-08 Score=97.42 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=150.4
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
.....+..+...|...|++++|...|++.....| +...+..+...+...|++++|.+.|++..+.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 95 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------------- 95 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Confidence 3456677788888889999999988887543344 56778888888888999999988887765322
Q ss_pred cCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048812 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384 (645)
Q Consensus 305 ~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 384 (645)
..+...+..+...+...|++++|+..|++....
T Consensus 96 -----------------------------------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 96 -----------------------------------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 223455677778888889999999999988764
Q ss_pred CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHH
Q 048812 385 GTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSI 460 (645)
Q Consensus 385 g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~ 460 (645)
...| +...+..+..++...|++++|.+.+.+..+ ..| +...+..+...+...|++++|.+.+++. .. +.+...
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3223 345566677788888999999999988874 234 3567788888899999999999888876 22 335566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+..+...+...|+.+.|..+.+.+....|
T Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 206 LWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 77777788888999999988888776544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.3e-06 Score=85.33 Aligned_cols=271 Identities=14% Similarity=0.197 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCC-CCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcc-cCCchhHHHHHHhh
Q 048812 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEID-EVD----VVLWTTLVSGYVKSNERDEARRLFDEMV-ERNLISWTLMISGM 302 (645)
Q Consensus 229 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~t~~~ll~~~ 302 (645)
..|..+.+.|-..|+++.|+.+|++.... -+. ..+|-.-...=.+..+++.|+++.+... -|.... + .|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~----~-~~ 462 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE----L-EY 462 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh----h-hh
Confidence 35667778888888899999888872211 121 2346666666667778888888877764 111100 0 11
Q ss_pred hccCC--------chhh-----hhhccccchhhHHHHHHHHHHcCCCCC--------------cHHHHHHHHhhcCc---
Q 048812 303 LNQDA--------EFKY-----KSCASIGALYHGIWVHVYIKKNQISID--------------NIELAYDLFSEISE--- 352 (645)
Q Consensus 303 ~~~~~--------~~~~-----~a~~~~~~l~~g~~i~~~~~~~~~~~~--------------~~~~A~~~f~~~~~--- 352 (645)
..++. ...+ .---+.|.++..+.++..++...+... .++++.+++++-..
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 11110 0000 233456778888888888888776554 67888888887654
Q ss_pred -CCh-hHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCCC
Q 048812 353 -KNV-YLWTSVIAAYAM---AGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC--SHGGLVDEGYDFLSKKSRVYNIKPK 425 (645)
Q Consensus 353 -~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~ 425 (645)
|++ ..||..+.-+.+ .-+.+.|..+|++..+ |.+|...-+.-|+.|- -.-|....|..+++.... ++.+.
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a 619 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEA 619 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHH
Confidence 554 468877766654 2357899999999988 6777755444444332 235788888888888664 34443
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHh-cCCC-CchhHHH
Q 048812 426 --MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSS---LLRACRCHQNVKLAEHAFKHLTE-TDPL-NDGAHVL 497 (645)
Q Consensus 426 --~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~---ll~a~~~~g~~~~a~~~~~~~~~-~~p~-~~~~y~~ 497 (645)
...|+..|.--+..=-+.....++++. ..-||...-.. ...--.+.|..++|..++...-+ .+|. ++..|.+
T Consensus 620 ~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~t 699 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDT 699 (835)
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHH
Confidence 455666554322221111222222222 11233332222 22223566777888887777777 3453 3445556
Q ss_pred HHHHHHHcCC
Q 048812 498 LANIYAKAGR 507 (645)
Q Consensus 498 l~~~~~~~g~ 507 (645)
.=+.-.+.|+
T Consensus 700 wk~FEvrHGn 709 (835)
T KOG2047|consen 700 WKEFEVRHGN 709 (835)
T ss_pred HHHHHHhcCC
Confidence 6666667777
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-07 Score=91.48 Aligned_cols=433 Identities=13% Similarity=0.122 Sum_probs=233.6
Q ss_pred HHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhh--cC------chh--hccCChHHHH
Q 048812 81 EFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVT--RT------VLL--NKCGKLKEVC 147 (645)
Q Consensus 81 ~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~------~~~--~~~g~~~~A~ 147 (645)
+.+...|++++|.+.-+++. +.|...+..=+-+.++.+++++|+.+.+.-.. .+ ..| .+.+..|+|.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHH
Confidence 44455555555555555543 22334445555555566666666644443332 11 122 3678889998
Q ss_pred HHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 048812 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226 (645)
Q Consensus 148 ~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 226 (645)
..++....-+..+-..-...+-+.|++++|+++|+.+.+.+..- +..--..++.+-... +. ..+......|
T Consensus 100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q~v~~v~ 171 (652)
T KOG2376|consen 100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQSVPEVP 171 (652)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHHhccCCC
Confidence 88885554444455555667788999999999999997765331 111222222221111 11 0111112122
Q ss_pred --chhHHHHHHHHHHHcCCHHHHHHHHccc--------CCCCCC---hh-----hHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 227 --SGSLLNYLVDMYFKCGKIGEAQKLLGRY--------EIDEVD---VV-----LWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 227 --~~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~~~---~~-----~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+-..+-.....+...|++.+|.++++.. .....+ .. .---|.-.+-..|+.++|.+++....
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1122222345567788899888888763 111111 11 12234445667899999999888776
Q ss_pred c---CCchhHHHHHH---hhhccCCchh------h-hhhccccchhhHHH-------HHHHHHHcCCCCCcHHHHHHHHh
Q 048812 289 E---RNLISWTLMIS---GMLNQDAEFK------Y-KSCASIGALYHGIW-------VHVYIKKNQISIDNIELAYDLFS 348 (645)
Q Consensus 289 ~---~~~~t~~~ll~---~~~~~~~~~~------~-~a~~~~~~l~~g~~-------i~~~~~~~~~~~~~~~~A~~~f~ 348 (645)
. +|........+ ++....+-++ + +.|..+...-..+. |.....-..+-.+..+.+++.-.
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2 23221111111 1111111111 0 22222221111111 11111111122335566666666
Q ss_pred hcCcCC-hhHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HhH
Q 048812 349 EISEKN-VYLWTSVIAAYA--MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLS--------KKS 417 (645)
Q Consensus 349 ~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~--------~~~ 417 (645)
..+... ...+.+++.... +...+.+|.+++...-+....-..+.....+..-...|+++.|.+++. .+.
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 555422 233444443332 223477788887777654222224455566667788999999999998 444
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
+ +.-.+.+...++.++.+.++-+.|..++.+. ...+. ..+|.-+..--.++|+.++|...++++.+.+
T Consensus 412 -~--~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 412 -E--AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred -h--hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 2 2334556677888999988866666665543 22222 1233333444456799999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCcee
Q 048812 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530 (645)
Q Consensus 489 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 530 (645)
|++..+.+.++.+|++.. .+.|..+-+ .+++.++..
T Consensus 489 ~~d~~~l~~lV~a~~~~d-~eka~~l~k-----~L~p~~~l~ 524 (652)
T KOG2376|consen 489 PNDTDLLVQLVTAYARLD-PEKAESLSK-----KLPPLKGLK 524 (652)
T ss_pred CchHHHHHHHHHHHHhcC-HHHHHHHhh-----cCCCcccch
Confidence 999999999999998754 455555543 344555444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-08 Score=104.36 Aligned_cols=241 Identities=18% Similarity=0.208 Sum_probs=171.8
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCC--------CCCChhh-HHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHH
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEI--------DEVDVVL-WTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ 297 (645)
-..+...|..+|...|+++.|..++..... ..+.+.+ .+.+...|...+++++|..+|+++.. +
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~-------i 270 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT-------I 270 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------H
Confidence 344555577777788888877777765211 1223332 33466678888999999888877541 1
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
. +.+|..+.+.-..+++.|..+|.+.|++++|...
T Consensus 271 ~---------------------------------------------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~ 305 (508)
T KOG1840|consen 271 R---------------------------------------------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEY 305 (508)
T ss_pred H---------------------------------------------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHH
Confidence 1 1112222223356788889999999999999888
Q ss_pred HHHHHH-----cCC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHHcCCHHH
Q 048812 378 FLEMEE-----TGT-KPDQ-VTFIALLSACSHGGLVDEGYDFLSKKSRVYN--IKPK----MQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 378 ~~~m~~-----~g~-~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~ 444 (645)
+++..+ .|. .|.. .-++.+...|...+.+++|..+++...+.+- +.++ ..+|+.|...|-..|++++
T Consensus 306 ~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~e 385 (508)
T KOG1840|consen 306 CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKE 385 (508)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhH
Confidence 877643 122 2332 3466677789999999999999987775443 2222 4789999999999999999
Q ss_pred HHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCC---chhHHHHHHHHHHcCC
Q 048812 445 SANFITSM---------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTE----TDPLN---DGAHVLLANIYAKAGR 507 (645)
Q Consensus 445 A~~~~~~m---------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p~~---~~~y~~l~~~~~~~g~ 507 (645)
|++++++. +..+. ...++.|..+|.+.++.+.|.++|.+... .+|+. ..+|..|+..|.+.|+
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 99999876 11222 45678889999999999999999998876 34544 3567789999999999
Q ss_pred chHHHHHHHHHH
Q 048812 508 LDDMSRIRMKLR 519 (645)
Q Consensus 508 ~~~a~~~~~~m~ 519 (645)
+++|.++.+...
T Consensus 466 ~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 466 YEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-08 Score=94.92 Aligned_cols=341 Identities=13% Similarity=0.050 Sum_probs=212.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 239 (645)
+-+...-|.++|.+++|++.|.+.++. .|| +..|.....+|...|+|+.+.+--...++.+ +.-+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 445566678889999999999988876 677 6677777778888899988887766666553 222344555566777
Q ss_pred HcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh---------cc--cCCchhHHHHHHhhhccC-C
Q 048812 240 KCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE---------MV--ERNLISWTLMISGMLNQD-A 307 (645)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~--~~~~~t~~~ll~~~~~~~-~ 307 (645)
..|++++|+.= +|-.++..+|....-.--+.+++.+ |. ++-+.+-.+.|..|...- +
T Consensus 195 ~lg~~~eal~D-----------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 195 QLGKFDEALFD-----------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred hhccHHHHHHh-----------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 77887776531 1122222222222222222222221 11 122233334443333221 1
Q ss_pred chhh--hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHh-------hcCcCC---------hhHHHHHHHHHHHcC
Q 048812 308 EFKY--KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFS-------EISEKN---------VYLWTSVIAAYAMAG 369 (645)
Q Consensus 308 ~~~~--~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~-------~~~~~~---------~~~~~~li~~~~~~g 369 (645)
..+. ..-+.-++-.....+.....+. ...+..|...+. .-...+ ..+.+.-..-+.-.|
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~---~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGL---EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhC---chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 1111 0000111111111111111110 012222222222 111112 112222222334568
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Q 048812 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 370 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
+.-.|.+.|+..+.....++.. |.-+..+|....+.++.++.|++..+ +.| +..+|..=..++.-.+++++|..=
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 8899999999999865444432 76777789999999999999999884 666 477787778888888999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 449 ITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 449 ~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|++. .+.| ++..|-.+.-+..+.+.+++++..|++..+..|..+..|.....++...+++++|.+.++...+..
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9887 5666 456777777777788899999999999999999999999999999999999999999999987644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-07 Score=88.51 Aligned_cols=280 Identities=15% Similarity=0.174 Sum_probs=178.2
Q ss_pred cCChHHHHHHHhhCCCCCcccHH---HHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCc----
Q 048812 86 TGDLGYAQQIIRQGDEPEIKIWN---SIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDV---- 158 (645)
Q Consensus 86 ~g~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~---- 158 (645)
..+.++|..+|-+|.+-|..++. ++.+.|.+.|..+.|+.+...... .||.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~----------------------spdlT~~q 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE----------------------SPDLTFEQ 105 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc----------------------CCCCchHH
Confidence 35678888888888766655544 445555555544444444443322 2332
Q ss_pred --chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch----hHHH
Q 048812 159 --ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG----SLLN 232 (645)
Q Consensus 159 --~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~ 232 (645)
.+.-.|..-|...|-++.|..+|..+.+.|. --......|+..|-...+|++|..+-..+.+.+-++.. ..|.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 2334566778888888999999988887642 23456677888888888999998888888887644432 2344
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhh
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~ 311 (645)
-|...+.-..+++.|..++.+.....| .+..--.+...+...|+++.|.+.++...+.|..-..
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~--------------- 249 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS--------------- 249 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH---------------
Confidence 455556667788888888887444444 4444555667788899999999998888766543211
Q ss_pred hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048812 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV 391 (645)
Q Consensus 312 ~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 391 (645)
.+-..|..+|.+.|+.++.+..+.++.+....++..
T Consensus 250 --------------------------------------------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 250 --------------------------------------------EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred --------------------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 234568889999999999999999988764444432
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH---cCCHHHHHHHHHhC
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR---AGHLEESANFITSM 452 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m 452 (645)
..+-.--....-.+.|..+..+-.+ -+|+...+..+|+.-.. .|+..+-..++++|
T Consensus 286 --l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 286 --LMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred --HHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 2222222223334455554444332 37888888888876532 23344444444444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-07 Score=102.80 Aligned_cols=261 Identities=11% Similarity=-0.009 Sum_probs=178.0
Q ss_pred CCcchHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHh---------cCCChHHHHHHHHHHH
Q 048812 156 RDVISWNTMISCYTS-----MGMYREGLGLLSKMGAEGVSPDE-VTMVSLISART---------KLRDLEMGKNLHLFLE 220 (645)
Q Consensus 156 ~~~~~~n~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 220 (645)
.+..+|...+.+-.. .+..++|+++|++..+. .|+. ..|..+..++. ..+++++|...+..++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455667677776432 23467999999999876 5554 34544443332 2345789999999999
Q ss_pred HhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHH
Q 048812 221 ESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299 (645)
Q Consensus 221 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll 299 (645)
+.+ +.+...+..+...+...|++++|...|++.....| +...|..+...+...|++++|+..+++..+.+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------ 404 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------ 404 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------
Confidence 886 56778888899999999999999999998655566 5678889999999999999999999988754421
Q ss_pred HhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048812 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFL 379 (645)
Q Consensus 300 ~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 379 (645)
+...+..++..+...|++++|+..++
T Consensus 405 ------------------------------------------------------~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 405 ------------------------------------------------------RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred ------------------------------------------------------ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 11122233444566788999999998
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 048812 380 EMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM----P 453 (645)
Q Consensus 380 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 453 (645)
+..+.. .|+ ...+..+..++...|+.++|...+.++.. ..|+ ....+.+...|.+.| ++|...++.+ .
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 887652 354 34455666677788999999998887663 2444 344455556667666 4666655554 3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 454 IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 454 ~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
..|...-+..++ +.-+|+-+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 334434443333 5556777766666 7766643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-08 Score=91.71 Aligned_cols=231 Identities=11% Similarity=0.054 Sum_probs=153.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc--cCCchhHHHHHHhhhc
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV--ERNLISWTLMISGMLN 304 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~t~~~ll~~~~~ 304 (645)
|..=-+-+..+|.+.|.+.+|.+.|++-....|-+.||-.|-.+|.+..+++.|+.+|.+-. .|..+|+-.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~------- 294 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL------- 294 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh-------
Confidence 33444678899999999999999999865567788899999999999999999999998876 344444321
Q ss_pred cCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048812 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET 384 (645)
Q Consensus 305 ~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 384 (645)
-+...+-..++.++|+++|+...+.
T Consensus 295 -------------------------------------------------------g~ARi~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 295 -------------------------------------------------------GQARIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred -------------------------------------------------------hhHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2223333344455555555554443
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HH
Q 048812 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPD--VS 459 (645)
Q Consensus 385 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~pd--~~ 459 (645)
...+......+...|.-.++++-|..+++.+. ..|+ .+.+.|+.+.-.|.-.+++|-++.-|++. -.+|+ ..
T Consensus 320 -~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 320 -HPINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred -CCccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 11223333333344444455555555555544 2332 23344444444444445555554444443 11233 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|-.|.......||+..|.+.|+-.+..+|++..+++.|.-.-.+.|+.++|..+++..++..
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 677777777888999999999999999999999999999999999999999999999887643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-06 Score=89.63 Aligned_cols=424 Identities=16% Similarity=0.085 Sum_probs=243.2
Q ss_pred CCCChhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHH
Q 048812 69 LMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKE 145 (645)
Q Consensus 69 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~ 145 (645)
+.-|+.+|..|.-+...+|+++.+.+.|++... .....|+.+...|.-.|.-..|+.+++.-..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~------------- 385 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK------------- 385 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc-------------
Confidence 345777777777777788888888888876542 2234577777777555554444444433210
Q ss_pred HHHHHccCCCCCcchHHHHHH-HHH-hcCChHHHHHHHHHHhhC--CCC--CChhhHHHHHHHHhcC----C-------C
Q 048812 146 VCQLFDKLPNRDVISWNTMIS-CYT-SMGMYREGLGLLSKMGAE--GVS--PDEVTMVSLISARTKL----R-------D 208 (645)
Q Consensus 146 A~~~f~~m~~~~~~~~n~li~-~~~-~~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~~----~-------~ 208 (645)
.-++|+..+--.|++ .|. +-+..++++++-.+.... |.. .....|..+.-+|... . .
T Consensus 386 ------~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~ 459 (799)
T KOG4162|consen 386 ------KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDAL 459 (799)
T ss_pred ------cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 011243333333333 232 346777887777776652 111 1122333333333221 1 1
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI--DEVDVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
..++.+.++..++.+ +.|+.+.-.|.--|+..++++.|.....+... .+-+...|..+.-.+.-.+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 245666777777665 33333333344567888899999888776433 344788999999999999999999999887
Q ss_pred cccCCchhHHHHHHhhhccCCchhh-hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc-----CCh-hHHH
Q 048812 287 MVERNLISWTLMISGMLNQDAEFKY-KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE-----KNV-YLWT 359 (645)
Q Consensus 287 m~~~~~~t~~~ll~~~~~~~~~~~~-~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~-----~~~-~~~~ 359 (645)
....-...++.+. .+..-+.+| ..|..++.+.+--.++.......... +-....+.+..+.- .+. .++.
T Consensus 539 al~E~~~N~~l~~---~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~-~~g~~~~lk~~l~la~~q~~~a~s~sr 614 (799)
T KOG4162|consen 539 ALEEFGDNHVLMD---GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL-DEGKLLRLKAGLHLALSQPTDAISTSR 614 (799)
T ss_pred HHHHhhhhhhhch---hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh-hhhhhhhhhcccccCcccccccchhhH
Confidence 6522111111110 000001111 22333222222222211000000000 00111122221110 111 2222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTK--PDQ------VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
.+..-.+..+ ..+..-.. |...-+. |+. ..+......+...+..++|...+.+..+ +.| ....|.
T Consensus 615 ~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~ 688 (799)
T KOG4162|consen 615 YLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYY 688 (799)
T ss_pred HHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHH
Confidence 2222221111 11100000 2222222 232 2344555677888888999888777663 455 467777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEH--AFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
.....+...|.+++|.+.|... -+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++-+.|
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 7888899999999999988775 56675 5688999999999999999988 999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 048812 507 RLDDMSRIRMKLRDMG 522 (645)
Q Consensus 507 ~~~~a~~~~~~m~~~~ 522 (645)
+.++|.+.|....+..
T Consensus 769 d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLE 784 (799)
T ss_pred chHHHHHHHHHHHhhc
Confidence 9999999999876654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-06 Score=85.34 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=119.1
Q ss_pred cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 048812 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-------VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP 424 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 424 (645)
.++.........+|.+.|++.+...+...|.+.|+--|. .++..++.-+.+.+..+.-...|+..-++ .+-
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~ 261 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRN 261 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--hhc
Confidence 456666777778888888888888888888887765443 36777777777777666666666666543 344
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C--------------------------------CCCCHHHHHHHHHHHHhc
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-P--------------------------------IPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~--------------------------------~~pd~~~~~~ll~a~~~~ 471 (645)
++..-.+++.-+.++|+.++|.+++.+. + .+-++-.+.+|..-|.++
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 5555667777777888888887776543 1 223456777888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+.+.+|...|+..++..|+. ..|..+..+|.+.|+.++|.+++++-.
T Consensus 342 ~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 342 KLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 88888888888888887754 778888888888888888888877654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-07 Score=95.88 Aligned_cols=237 Identities=17% Similarity=0.159 Sum_probs=176.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHHcCCHHHHHHHHcccCC-----CCC--
Q 048812 194 VTMVSLISARTKLRDLEMGKNLHLFLEES-----TM-KISG-SLLNYLVDMYFKCGKIGEAQKLLGRYEI-----DEV-- 259 (645)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~-- 259 (645)
.|...+...|...|+++.|.++++..++. |. .|.. ...+.+...|...+++++|..+|+.+.. -++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46777888999999999999999988765 21 2222 2334577889999999999999887421 122
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCC
Q 048812 260 --DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISI 337 (645)
Q Consensus 260 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~ 337 (645)
-..+++.|...|.+.|++++|...+++..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al------------------------------------------------- 310 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERAL------------------------------------------------- 310 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHH-------------------------------------------------
Confidence 24568888889999999999998876643
Q ss_pred CcHHHHHHHHhhc---CcCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhccCcH
Q 048812 338 DNIELAYDLFSEI---SEKNV-YLWTSVIAAYAMAGHAQKAIDLFLEMEET---GTKPD----QVTFIALLSACSHGGLV 406 (645)
Q Consensus 338 ~~~~~A~~~f~~~---~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd----~~t~~~ll~a~~~~g~~ 406 (645)
+++... ..+.+ .-.+.++..+...+++++|..+++...+. -+.++ ..++..+...|.+.|++
T Consensus 311 -------~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 311 -------EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred -------HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 222221 11222 23566778888999999999998876532 13333 35789999999999999
Q ss_pred HHHHHHHHHhHHhc-----CCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhc
Q 048812 407 DEGYDFLSKKSRVY-----NIKPK-MQHYGCMVDLLGRAGHLEESANFITSM--------PIPPDV-SIWSSLLRACRCH 471 (645)
Q Consensus 407 ~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd~-~~~~~ll~a~~~~ 471 (645)
++|.++|+++.+.. +..+. ...++.|...|.+.+++++|.++|.+. +..|++ .+|..|...|...
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 99999999887532 11222 467788999999999999998888765 344554 5899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 048812 472 QNVKLAEHAFKHLTE 486 (645)
Q Consensus 472 g~~~~a~~~~~~~~~ 486 (645)
|+++.|+++.+.+..
T Consensus 464 g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 464 GNYEAAEELEEKVLN 478 (508)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999999885
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-07 Score=89.78 Aligned_cols=231 Identities=13% Similarity=0.028 Sum_probs=151.4
Q ss_pred CChHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 048812 207 RDLEMGKNLHLFLEEST-MKI--SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARR 282 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 282 (645)
+..+.+..-+.+++... +.| ....+..+...|.+.|+.++|...|++.....| +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455556666666432 122 245577778888999999999998887544455 67889999999999999999999
Q ss_pred HHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHH
Q 048812 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVI 362 (645)
Q Consensus 283 ~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li 362 (645)
.|++..+.+ ..+..+|..+.
T Consensus 120 ~~~~Al~l~------------------------------------------------------------P~~~~a~~~lg 139 (296)
T PRK11189 120 AFDSVLELD------------------------------------------------------------PTYNYAYLNRG 139 (296)
T ss_pred HHHHHHHhC------------------------------------------------------------CCCHHHHHHHH
Confidence 888776433 12456677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 442 (645)
..+...|++++|++.|++..+. .|+..........+...++.++|...|.+... ...|+...+ .++.. ..|++
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~--~lg~~ 212 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEF--YLGKI 212 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHH--HccCC
Confidence 8888899999999999998874 45543222222234456789999999976553 223443222 33333 34444
Q ss_pred HH--HHHHHHh-CCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHH
Q 048812 443 EE--SANFITS-MPI----PP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN-DGAHVLLANIYAK 504 (645)
Q Consensus 443 ~~--A~~~~~~-m~~----~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~ 504 (645)
.+ +.+.+.+ ... .| ....|..+...+...|+.++|+..|+++++.+|.+ ...-..++.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 33 3322222 111 12 23578889999999999999999999999999744 3343445544433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-06 Score=80.70 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=133.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHH
Q 048812 265 TTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAY 344 (645)
Q Consensus 265 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~ 344 (645)
-.|+--|.+.++..+|..+.++.....+ +.-++.|.. |..+.+.--..+-+.-|.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP--~EyilKgvv-----------------------~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTP--YEYILKGVV-----------------------FAALGQETGSREHLKIAQ 343 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCCh--HHHHHHHHH-----------------------HHHhhhhcCcHHHHHHHH
Confidence 3456668899999999998877652222 222222111 111111111122455666
Q ss_pred HHHhhcCc-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 345 DLFSEISE-----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 345 ~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
+.|..... .++.--.+|.+.+.-..++++.+-.+...... ...|.+--..+..|.+..|.+.+|.++|-.+. .
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~ 421 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-G 421 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-C
Confidence 66665443 23344667888888888899999888888776 33344444467889999999999999997765 2
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLL-RACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
-.++.+..-...|...|.+.|+.+-|.+++-++..+.+..+...|| +-|.+.+.+--|-+.|..+..++|.+
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 2333333334567788999999999999999997656666655554 45999999999999999998899854
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-05 Score=78.07 Aligned_cols=378 Identities=11% Similarity=0.070 Sum_probs=220.1
Q ss_pred hHHHHHHhcCChHHHHHHHhhCCCCCcc-cHHHHHHHHHHcCC-hhHHHHHHHHHhhcC-ch------hh--ccCChHHH
Q 048812 78 QVFEFLVFTGDLGYAQQIIRQGDEPEIK-IWNSIIENQLINGY-PQEVFAIYLYLVTRT-VL------LN--KCGKLKEV 146 (645)
Q Consensus 78 ~ll~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~-~~~A~~~~~~m~~~~-~~------~~--~~g~~~~A 146 (645)
..+..|-..++-+.|.....+.++.-.. --|.|+.-+-+.|. -.++.--+...+... .. .. .....+.+
T Consensus 102 ~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~ 181 (564)
T KOG1174|consen 102 RAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEIN 181 (564)
T ss_pred HHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhh
Confidence 3445566667778888887777644332 23444443333322 122222222222211 00 00 00111111
Q ss_pred HHHHccCCCCCcchHHH-HHHHHHh--cCChHHHHHHHHHHhhC-CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 048812 147 CQLFDKLPNRDVISWNT-MISCYTS--MGMYREGLGLLSKMGAE-GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222 (645)
Q Consensus 147 ~~~f~~m~~~~~~~~n~-li~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (645)
-.....+.-++..-|-. .|.++++ .++...|..++-.+... -++-|......+.+.+...|+..++...|+.....
T Consensus 182 S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 182 SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 11111222233333433 2444433 45555555554444333 23445566777777888888888888888776644
Q ss_pred CCCCchhHH-HHHHHHHHHcCCHHHHHHHHcccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 223 TMKISGSLL-NYLVDMYFKCGKIGEAQKLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 223 g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
+ |+.... .-..-.+.+.|+.++-.++-..+.. .......|-.-........+++.|+.+-++-.+.|......+|
T Consensus 262 d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ali- 338 (564)
T KOG1174|consen 262 N--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALI- 338 (564)
T ss_pred C--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHH-
Confidence 2 222111 1111223455666655554443211 1123344544445555667777787777776654443322222
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHc--CCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKN--QISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAI 375 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~--~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 375 (645)
.|. -+..++.++|.-.|+.... -+..+|.-|+..|...|++.+|.
T Consensus 339 ------------------------------lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 339 ------------------------------LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred ------------------------------hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 111 1223467777777765432 47789999999999999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 376 DLFLEMEETGTKPDQVTFIALL-SACS-HGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 376 ~l~~~m~~~g~~pd~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
.+-+...+. .+.+..|...+. ..|. ...--++|.+++++.. .+.|+ ....+.+..++.+.|+.+++..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 877665443 344555555442 2333 2334577888887766 36787 566778888999999999999999886
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 453 -PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 453 -~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
...||...-+.|...++..+.+++|...|..++.++|.+.
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 6779999999999999999999999999999999999873
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-07 Score=92.97 Aligned_cols=193 Identities=15% Similarity=0.045 Sum_probs=144.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcH
Q 048812 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI 340 (645)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~ 340 (645)
...|..+...|...|+.++|...|++..+.+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------------------------------------------------- 94 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR------------------------------------------------- 94 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------------------------------------------------
Confidence 4568888889999999999999888766433
Q ss_pred HHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 341 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
..+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+
T Consensus 95 -----------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~- 160 (296)
T PRK11189 95 -----------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ- 160 (296)
T ss_pred -----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 24567899999999999999999999999987 4565 67788888889999999999999999885
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCC
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT-------ETDPL 490 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~p~ 490 (645)
..|+..........+...+++++|.+.+++. ...|+...| .......|+...+ ..++.+. ++.|.
T Consensus 161 --~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~ 234 (296)
T PRK11189 161 --DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAER 234 (296)
T ss_pred --hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHH
Confidence 4565332222233345678899999999664 233433222 2222335665544 3445544 35566
Q ss_pred CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 491 NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 491 ~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.+.+|..|+.+|...|++++|...+++..+.+
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77899999999999999999999999987755
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.9e-06 Score=80.22 Aligned_cols=284 Identities=12% Similarity=0.067 Sum_probs=160.7
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhh
Q 048812 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVL-WTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGM 302 (645)
Q Consensus 224 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~ 302 (645)
++.|+....++.+.|...|+.++|...|++..+..|+.++ .....-.+.+.|+.+.-..+...+...+..|-....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf--- 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF--- 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh---
Confidence 4555666666666666666666666666665454553322 111122234455555555444444322111100000
Q ss_pred hccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048812 303 LNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFL 379 (645)
Q Consensus 303 ~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 379 (645)
+|. ...+...+.+.|...-+...+ +++..|-.-...+.+.|++++|.-.|+
T Consensus 305 -----------------------V~~---~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 305 -----------------------VHA---QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred -----------------------hhh---hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 000 001122244555555444433 333334333456667778888888787
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH-HHHHH-cCCHHHHHHHHHhC-CCC
Q 048812 380 EMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV-DLLGR-AGHLEESANFITSM-PIP 455 (645)
Q Consensus 380 ~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~ 455 (645)
..+. ..| +...|..|+.+|...|.+.+|.-.-+...+.. ..+..+.+-+. +.+.- ..--++|.+++++. .++
T Consensus 359 ~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 359 TAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 7765 343 46778888888888888777776665555322 22233332221 11111 12235677777664 566
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEE
Q 048812 456 PDV-SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQ 534 (645)
Q Consensus 456 pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~ 534 (645)
|+- ..-+.+..-|...|..+.+..++++.+...|+. ..++.|.+++...+.+.+|...+.....
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-------------- 499 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR-------------- 499 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------
Confidence 653 355566666778888888888888888887755 6778888888888888888877766543
Q ss_pred CCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 048812 535 GGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567 (645)
Q Consensus 535 ~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 567 (645)
.+|+.+....-+..|.++|++
T Consensus 500 ------------~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 500 ------------QDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred ------------cCccchHHHHHHHHHHhccCC
Confidence 457777777777777666654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=88.74 Aligned_cols=231 Identities=9% Similarity=0.010 Sum_probs=182.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhH-HHHHHHHHhcC
Q 048812 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLW-TTLVSGYVKSN 275 (645)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~-~~li~~~~~~g 275 (645)
+.+.++|.+.|.+..|+..++..++. .|-+.+|--|-..|.+..+.+.|..+|.+-...-|-.+|+ .-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45778888999999999998888876 4556677778899999999999999998854455644444 45667777788
Q ss_pred CHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCCh
Q 048812 276 ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNV 355 (645)
Q Consensus 276 ~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~ 355 (645)
+.++|.++++...+.+. -|+
T Consensus 305 ~~~~a~~lYk~vlk~~~------------------------------------------------------------~nv 324 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHP------------------------------------------------------------INV 324 (478)
T ss_pred hHHHHHHHHHHHHhcCC------------------------------------------------------------ccc
Confidence 88888888887764432 244
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMV 433 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li 433 (645)
.+..++..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|.-.+++|-+..-|+.... .--.|+ ..+|-.+.
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg 402 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLG 402 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccc
Confidence 44555667788889999999999999999876 778888888899999999999998888773 334454 56788888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
......|++.-|.+.|+-. ...| +...++.|.---.+.|+++.|..++..+....|.-
T Consensus 403 ~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 403 FVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred eeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 8888899999999998875 3333 45688888887889999999999999999988864
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-06 Score=87.07 Aligned_cols=273 Identities=14% Similarity=0.069 Sum_probs=181.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 242 (645)
.-..-+...+++.+.+++++...+. .++....+..=|.++...|+..+-..+-..+++. .|..+.+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 3344455677788888888777665 2444455555555666777666555555555544 3556677777777777778
Q ss_pred CHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchh
Q 048812 243 KIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321 (645)
Q Consensus 243 ~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~ 321 (645)
+.++|++.|.+..+-+| =...|-.....|+-.|..|+|+..+...
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA---------------------------------- 372 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA---------------------------------- 372 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH----------------------------------
Confidence 88888888876322233 2456778888888888877777765432
Q ss_pred hHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 048812 322 HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSAC 400 (645)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~ 400 (645)
-++|.....|... +..-|.+.+..+-|.+.|.+... +-|+ +...+-+.-..
T Consensus 373 ----------------------arl~~G~hlP~LY----lgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 373 ----------------------ARLMPGCHLPSLY----LGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVA 424 (611)
T ss_pred ----------------------HHhccCCcchHHH----HHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhhee
Confidence 3333333333221 33456677888888888877665 4454 45555555455
Q ss_pred hccCcHHHHHHHHHHhHHhc-CCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 048812 401 SHGGLVDEGYDFLSKKSRVY-NIKP----KMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQN 473 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~ 473 (645)
.+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.+.+++++|...+++. . .+.|..++.++.-.+...|+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 56778888888887766211 0111 2455788888899999999999999886 2 33477888888888999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
++.|...|.+.+.+.|++..+-..|.
T Consensus 505 ld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 505 LDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999999999998855444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-06 Score=86.79 Aligned_cols=362 Identities=12% Similarity=0.156 Sum_probs=207.0
Q ss_pred HHHHHHhcCChHHHHHHHh--hCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCC--
Q 048812 79 VFEFLVFTGDLGYAQQIIR--QGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP-- 154 (645)
Q Consensus 79 ll~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~-- 154 (645)
-|..|.+.|.+..|.+.-. +-...|......+..++++...++.|-.+|+++ .++++|.+.|++-.
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki----------~d~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI----------HDFDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh----------hCHHHHHHHHHcccHH
Confidence 3455555555555544332 112234444444555555555555555555544 34455555554321
Q ss_pred ----------CC-CcchH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 048812 155 ----------NR-DVISW-NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES 222 (645)
Q Consensus 155 ----------~~-~~~~~-n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (645)
-| .++.. .....-+.+.|+++.|+..|-+... ..-.+.+....+.+.+|..+++.+...
T Consensus 691 ~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 01 11111 1223334455666666666654321 122344555567777777777766544
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchh--HHHHHH
Q 048812 223 TMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMIS 300 (645)
Q Consensus 223 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t--~~~ll~ 300 (645)
. .-..-|.-+.+-|+..|+++.|.++|-+ ...++.-|..|.++|+|+.|.++-++...|.... |.+--.
T Consensus 762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e-------~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakae 832 (1636)
T KOG3616|consen 762 K--TASGYYGEIADHYANKGDFEIAEELFTE-------ADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAE 832 (1636)
T ss_pred c--cccccchHHHHHhccchhHHHHHHHHHh-------cchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHH
Confidence 2 2233455667788888888888888876 2345667778888888888888877766553321 111110
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 380 (645)
-+- +.+++.+|+++|-.+..|+. -|..|-++|..+..+++..+
T Consensus 833 dld--------------------------------ehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 833 DLD--------------------------------EHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred hHH--------------------------------hhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH
Confidence 011 12266777777777777764 46788889999888888766
Q ss_pred HHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---
Q 048812 381 MEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIP--- 455 (645)
Q Consensus 381 m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 455 (645)
-. || ..|-..+..-+-..|++..|.+.|-+.. -|.+-+++|-..+.+++|.++-+.-+-.
T Consensus 876 ~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~ 940 (1636)
T KOG3616|consen 876 HH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAE 940 (1636)
T ss_pred hC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHH
Confidence 43 33 4566677777788888888888776544 2566778888888888888887665311
Q ss_pred -CCHHHHHHH------HHHHHhcCChHHHHH-------------HHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 456 -PDVSIWSSL------LRACRCHQNVKLAEH-------------AFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 456 -pd~~~~~~l------l~a~~~~g~~~~a~~-------------~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
.-...|.-- ..-+-++|-++.|.. +.+-..+ ..-+..+.-+.--+...|++++|.+-+
T Consensus 941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhh
Confidence 012233221 222344454444443 3222222 122356667777788889999987766
Q ss_pred HHHHhCC
Q 048812 516 MKLRDMG 522 (645)
Q Consensus 516 ~~m~~~~ 522 (645)
-+..+.+
T Consensus 1019 veaikln 1025 (1636)
T KOG3616|consen 1019 VEAIKLN 1025 (1636)
T ss_pred HHHhhcc
Confidence 6655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.2e-08 Score=97.52 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=173.5
Q ss_pred HHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
-+.+.|++.+|.-.|+...+..| +...|--|....+.+++-..|+..+++..+-|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP----------------------- 350 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP----------------------- 350 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-----------------------
Confidence 35678888888888887555566 677888888888888888888888877765543
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-------- 387 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------- 387 (645)
.|....-+|.-.|...|.-.+|+..++.-+....+
T Consensus 351 -------------------------------------~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~ 393 (579)
T KOG1125|consen 351 -------------------------------------TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAG 393 (579)
T ss_pred -------------------------------------ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccC
Confidence 35555567777888899999999999887654211
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048812 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLL 465 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll 465 (645)
++..+-.. ..+.+...+....++|-++....+..+|..++.+|.-+|--.|.+++|.+.|+.. ..+| |..+||-|.
T Consensus 394 ~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 394 ENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG 471 (579)
T ss_pred ccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence 01000000 1223333445666777777777777788999999999999999999999999987 6777 667999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..++.....++|+..|.+++++.|.-..+.+.|+-.|...|.++||.+.+-....
T Consensus 472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-07 Score=81.40 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVD 434 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 434 (645)
+...+.-+|.+.|+...|...+++.++. .|+ ..++..+...|...|..+.|.+.|++..+ +.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 4556778999999999999999999985 455 67888999999999999999999999884 6775 678888999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 435 LLGRAGHLEESANFITSMPIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
.+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|+..+++.++++|+.+.+...+.+...+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998732232 45788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 048812 511 MSRIRMKLRDMG 522 (645)
Q Consensus 511 a~~~~~~m~~~~ 522 (645)
|...++....++
T Consensus 192 Ar~~~~~~~~~~ 203 (250)
T COG3063 192 ARLYLERYQQRG 203 (250)
T ss_pred HHHHHHHHHhcc
Confidence 999999887765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-05 Score=79.81 Aligned_cols=406 Identities=13% Similarity=0.087 Sum_probs=221.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
+....+.+..+.+++ +++..+.+..-.--.+...|+-++|........+ .+.+.|..+.-.+....++++|+..|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 456666666666665 3333333333333345566888888888876654 456779988888888888889998888
Q ss_pred HHhhcC-----------chhhccCChHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCh
Q 048812 129 YLVTRT-----------VLLNKCGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEG-VSPDE 193 (645)
Q Consensus 129 ~m~~~~-----------~~~~~~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 193 (645)
.+...+ -+-...|+++.....-.+.. ......|..+..++.-.|++..|..+.++..+.- -.|+.
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCH
Confidence 877643 11223344443333322222 2355677777777777788888887777776653 23454
Q ss_pred hhHHHHH------HHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHH
Q 048812 194 VTMVSLI------SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTL 267 (645)
Q Consensus 194 ~t~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 267 (645)
..|.-.. ....+.|.++.|.+.+..-.. .+......-..-.+.+.+.+++++|..++..+....||..-|+-.
T Consensus 180 ~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~ 258 (700)
T KOG1156|consen 180 EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence 4443222 223445555555554332221 112222233344566677777777777777766666666655544
Q ss_pred HHHHH-hcCCHHHHH-HHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHH
Q 048812 268 VSGYV-KSNERDEAR-RLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345 (645)
Q Consensus 268 i~~~~-~~g~~~~A~-~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~ 345 (645)
...+. +--+.-+++ .+|....+.=. .
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~y~-r--------------------------------------------------- 286 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEKYP-R--------------------------------------------------- 286 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcCc-c---------------------------------------------------
Confidence 43332 222222222 33333221000 0
Q ss_pred HHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH----HHHHHHHHhHHhcC
Q 048812 346 LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVD----EGYDFLSKKSRVYN 421 (645)
Q Consensus 346 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~----~a~~~~~~~~~~~~ 421 (645)
...|--...+. +.+ ..-.+..-.++..+.+.|++|--..+.++. -.....+ -+..+...+. ..|
T Consensus 287 ----~e~p~Rlplsv-l~~---eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~-~~~ 354 (700)
T KOG1156|consen 287 ----HECPRRLPLSV-LNG---EELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLS-GTG 354 (700)
T ss_pred ----cccchhccHHH-hCc---chhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcc-ccc
Confidence 00000000000 000 111223334555566666654333332222 2111111 1111111111 011
Q ss_pred ----------CCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 422 ----------IKPK--MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVS-IWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 422 ----------~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
-.|. ..++-.++..+-+.|+++.|+.+++.. .-.|+.+ .|.+=.+.+...|+++.|...++++.++
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 1344 355567888889999999999999876 5556544 5555556688889999999999999998
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 488 DPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 488 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+-.|...-.--++-..++.+.++|.++.....+.|.
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 865533222355556688889999998888776664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8e-05 Score=76.98 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHhhcCc---------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHH
Q 048812 325 WVHVYIKKNQISIDNIELAYDLFSEISE---------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD---QVT 392 (645)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t 392 (645)
.++.+..+..+..++..+-..+|.+... .-...|-.+...|-.+|+.+.|..+|++..+...+-- ..+
T Consensus 348 nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 348 NVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred cHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 3555566665655555555555544322 1235688888899999999999999998876432211 223
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----------C-------ChHHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 048812 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIK----------P-------KMQHYGCMVDLLGRAGHLEESANFITSM--- 452 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 452 (645)
|..-...=.+..+++.|.++.+.... -.-. | +...|+..+|..-..|-++....+++++
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33333333455677888887776652 1111 1 1345677788888888888888888887
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHH-H--cCCchHHHHHHHHHHh
Q 048812 453 P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYA-K--AGRLDDMSRIRMKLRD 520 (645)
Q Consensus 453 ~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~~~-~--~g~~~~a~~~~~~m~~ 520 (645)
. ..|..+. ...--+-.+.-++++.+++++-+.+.|- -...|+..+.-+. + ..+++.|..+|++..+
T Consensus 507 riaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 507 RIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred hcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 2 3343332 2222245677789999999999887743 2234444333332 2 3467889999999887
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-07 Score=90.05 Aligned_cols=147 Identities=12% Similarity=0.069 Sum_probs=83.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH---HHHHHHHHHHHcCC
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ---HYGCMVDLLGRAGH 441 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~ 441 (645)
+...|++++|++++.+- .+.......+..+...++++.|.+.++.|.+ +..|.. ...+.+..+.-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchh
Confidence 33445566665555431 2334444455556666666666666666552 233321 11222222222235
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc-hHHHHHHHHH
Q 048812 442 LEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL-DDMSRIRMKL 518 (645)
Q Consensus 442 ~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~-~~a~~~~~~m 518 (645)
+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|.++.+...++-+..-.|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 66677777666 33456667777777777777777777777777777777777777777777777777 4566677766
Q ss_pred Hh
Q 048812 519 RD 520 (645)
Q Consensus 519 ~~ 520 (645)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-05 Score=81.10 Aligned_cols=329 Identities=14% Similarity=0.173 Sum_probs=206.5
Q ss_pred HHHcCChhHHHHHHHHHhhcC----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 114 QLINGYPQEVFAIYLYLVTRT----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
.+.++.+++|+.+|++--... .+.-.-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1058 ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 344555666777766543322 2233445666666666655544 45888888888888888888877543
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
-|+..|.-++..+.+.|.+++-...+..+.+..-+|. +-+.||-+|++.+++.+-+++.. +||+.....+.+
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~-----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA-----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-----CCCchhHHHHhH
Confidence 2667788888888888888888887777666654444 44678888888888888777643 466666666677
Q ss_pred HHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhh
Q 048812 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349 (645)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~ 349 (645)
-|...|.++.|.-+|.
T Consensus 1203 rcf~~~~y~aAkl~y~---------------------------------------------------------------- 1218 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYS---------------------------------------------------------------- 1218 (1666)
T ss_pred HHhhhhhhHHHHHHHH----------------------------------------------------------------
Confidence 7777777776665553
Q ss_pred cCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 350 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
++.-|..+...+...|+++.|...-++. .+..||.-+-.+|...+.+.-|. |. -.++.....-.
T Consensus 1219 ----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iC-GL~iivhadeL 1282 (1666)
T KOG0985|consen 1219 ----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----IC-GLNIIVHADEL 1282 (1666)
T ss_pred ----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hc-CceEEEehHhH
Confidence 3344777778888888888887654432 25678888888888776654432 22 12233455666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cC-C------CCchhHHHHH
Q 048812 430 GCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TD-P------LNDGAHVLLA 499 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~-p------~~~~~y~~l~ 499 (645)
..|+..|-..|-++|-..+++.. +.+. ....|+-|.--|++.+ +++..+-++-... ++ | +....|.-|.
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888764 4332 3334444444444433 2333322222221 11 1 1224566677
Q ss_pred HHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH
Q 048812 500 NIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEI 561 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l 561 (645)
-.|.+-..|+.|.-.. | + .|.-.| .|.+.++|..+...+
T Consensus 1362 fLY~~y~eyDNAa~tm--m-~-----h~teaw---------------~~~~FKdii~kVaNv 1400 (1666)
T KOG0985|consen 1362 FLYDKYEEYDNAALTM--M-E-----HPTEAW---------------DHGQFKDIITKVANV 1400 (1666)
T ss_pred HHHHhhhhhhHHHHHH--H-h-----CChhhh---------------hhhhHHHHHHHHhhH
Confidence 7777777777765442 2 1 233344 677777777666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.8e-05 Score=76.92 Aligned_cols=303 Identities=12% Similarity=-0.007 Sum_probs=176.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhhHH-HHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHH---H
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMV-SLISARTKLRDLEMGKNLHLFLEESTMKISGSLLN---Y 233 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~ 233 (645)
..|..+...+...|+++++...+.+...... .++..... .....+...|+++.+.+++..+.+.. +.+...++ .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 4566666667777777777666666544311 22222111 12223456788888888888887764 44444444 2
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhh
Q 048812 234 LVDMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312 (645)
Q Consensus 234 li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~ 312 (645)
+.......|..+.+.+.++......|+ ......+...+...|++++|.+.+++..+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------------------- 144 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------------------- 144 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------
Confidence 222222345566666666542112232 3344455667788888888888888765433
Q ss_pred hhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH-
Q 048812 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPDQ- 390 (645)
Q Consensus 313 a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~- 390 (645)
+.+...+..+...|...|++++|+.++++...... .|+.
T Consensus 145 ---------------------------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~ 185 (355)
T cd05804 145 ---------------------------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLR 185 (355)
T ss_pred ---------------------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchh
Confidence 23445567777788888888888888888776422 2332
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHHcCCHHHHHHH---HHh---C-CCCCCHH
Q 048812 391 -VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY-G--CMVDLLGRAGHLEESANF---ITS---M-PIPPDVS 459 (645)
Q Consensus 391 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~pd~~ 459 (645)
..+..+...+...|+.++|..++++........+..... + .++.-+...|..+.+.++ ... . +......
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~ 265 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAF 265 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchH
Confidence 234456677788888888888888875321111111111 1 223333444432222222 111 1 1111122
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-C--------CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETD-P--------LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.......++...|+.+.|..+++.+.... . ...........++...|++++|.+.+.......
T Consensus 266 ~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 266 NDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 23356666788899999999999887622 1 123344566777889999999999988876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-05 Score=83.35 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMY 238 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 238 (645)
+...|++++|++.+..-... -+|.. .+......+.+.|+.++|..++..+++.+ +.+..-|..|..+.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 44556666666665443222 23333 33334445555566666666666665554 33333344444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.7e-05 Score=80.02 Aligned_cols=443 Identities=12% Similarity=0.094 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHhCCCCC-hhhhhhHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHHcCChhHHHHHHHHHh
Q 048812 56 EFERIHSHLITTNLMRD-PQISTQVFEFLVFTGDLGYAQQIIRQGDE---PEIKIWNSIIENQLINGYPQEVFAIYLYLV 131 (645)
Q Consensus 56 ~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (645)
.+..++..+....+.++ ...|..|-..|...-+...|.+.|++..+ .|..+|-.....|++...+++|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34455555555555444 35688888999888899999999998764 467789999999999999999999844333
Q ss_pred hc-------------CchhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhh
Q 048812 132 TR-------------TVLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195 (645)
Q Consensus 132 ~~-------------~~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 195 (645)
+. +-.|.+.++..+|..-|..... .|...|..+..+|.+.|.+..|+++|.+.... .|+. +
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-K 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-H
Confidence 31 1667788888888888886543 57889999999999999999999999988764 4543 3
Q ss_pred HHHHHH--HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc-------CCHHHHHHHHccc-------CCC--
Q 048812 196 MVSLIS--ARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC-------GKIGEAQKLLGRY-------EID-- 257 (645)
Q Consensus 196 ~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-------g~~~~A~~~~~~m-------~~~-- 257 (645)
|...-. .-+..|.+.++...++.++..- .......+.|...+.++ |-...|...|+.- ...
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 332222 2456788999998888876542 12222233333333332 3333333333330 000
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchh--HHHHHHh-hhccC----Cchhh--hhhc---------cccc
Q 048812 258 EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMISG-MLNQD----AEFKY--KSCA---------SIGA 319 (645)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t--~~~ll~~-~~~~~----~~~~~--~a~~---------~~~~ 319 (645)
..+...|-.+- .|..+|-... |+.+. +..++.. +-..+ +++-+ .-|. ...=
T Consensus 710 ~~~~~~Wi~as----------dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 710 QSDRLQWIVAS----------DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred hhhHHHHHHHh----------HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 01222333222 2333333333 33111 1111111 00011 11111 1111 1111
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 396 (645)
...|.....+....+-...+...|...+.... ..|..+||.|.-. ...|.+.-|...|-+-... .+.+..+|..+
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~Nl 856 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNL 856 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheecc
Confidence 23455555555555555556667777776443 3678899987766 6667777777777665554 34467889888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHH
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-------PIPPDVSIWSSLLRAC 468 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd~~~~~~ll~a~ 468 (645)
--.|....+++.|...|..... +.|+ ...|-.........|+.-++..+|..- +--|+...|-....-.
T Consensus 857 gvL~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h 933 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH 933 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH
Confidence 8889999999999999988773 6674 666766666667788888888888752 2345655565544445
Q ss_pred HhcCChHHH----------HHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 469 RCHQNVKLA----------EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 469 ~~~g~~~~a----------~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
...|+.++- --..++.+...|+...+|...+...-..+.+.+|.+...+.
T Consensus 934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555555443 33444555567888888888888888888877777665553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-05 Score=73.38 Aligned_cols=194 Identities=13% Similarity=0.076 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 239 (645)
..-|.-+|.+.|++..|..-+++.++. .|+. .++..+...|-+.|+.+.|.+-|..+++.. +.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 445666788888888888888888776 3443 477777777788888888888888887765 556677777777788
Q ss_pred HcCCHHHHHHHHcccCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 240 KCGKIGEAQKLLGRYEIDEV----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
..|++++|...|++. +..| -..+|..+.-+..+.|+++.|...|++..+.|.
T Consensus 115 ~qg~~~eA~q~F~~A-l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp----------------------- 170 (250)
T COG3063 115 AQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP----------------------- 170 (250)
T ss_pred hCCChHHHHHHHHHH-HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-----------------------
Confidence 888888888888763 2233 345777777777788888888887777654332
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 395 (645)
.+..+.-.|.......|++-.|...++.....+. ++..+...
T Consensus 171 -------------------------------------~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L 212 (250)
T COG3063 171 -------------------------------------QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLL 212 (250)
T ss_pred -------------------------------------CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHH
Confidence 1223344556666677788888887777776655 77777777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHh
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
.|..-...|+.+.+.++=..+.+.
T Consensus 213 ~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 213 GIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777777777777776666653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-05 Score=83.79 Aligned_cols=231 Identities=16% Similarity=0.226 Sum_probs=143.7
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchh--HHHHHHhhhccCCchhhhhh
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLIS--WTLMISGMLNQDAEFKYKSC 314 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t--~~~ll~~~~~~~~~~~~~a~ 314 (645)
-+...|+++.|..-|-+ . ...---|.+-.....|.+|+.+++.++..+..+ |..+-..|..
T Consensus 715 hl~~~~q~daainhfie--a-----~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan---------- 777 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIE--A-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN---------- 777 (1636)
T ss_pred HHHHHHhHHHHHHHHHH--h-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc----------
Confidence 33445555555555543 1 111123444556677778888877776544322 2222223332
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048812 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394 (645)
Q Consensus 315 ~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 394 (645)
.++++.|+++|.+.. .++--|..|.+.|+++.|.++-.+. .|.......|.
T Consensus 778 ----------------------~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yi 828 (1636)
T KOG3616|consen 778 ----------------------KGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYI 828 (1636)
T ss_pred ----------------------chhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHH
Confidence 236777777776432 3556788899999999998876543 34444556666
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNV 474 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~ 474 (645)
+-..-.-..|++.+|.+++-.+. .|+. -|.+|-+.|..++..++..+-.-..-..|-..+..-+-..|++
T Consensus 829 akaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 829 AKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred HhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 66666777888888887764333 3553 4678889999999888888764222234556666778888888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 475 KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
..|+.-|-++ .-+-.-+++|-.++.|++|.++-+.--..+..|...+-|
T Consensus 899 kaae~~flea--------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 899 KAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 8888877544 345667788999999999988865433333333333444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-05 Score=74.06 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=183.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHH-HHHHH
Q 048812 193 EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTT-LVSGY 271 (645)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~-li~~~ 271 (645)
.--+.+++..+.+..+++.+.+++..-.+.. +.+....+.|..+|....++..|-..++++-...|...-|.. -...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3345555655666667777777766655553 335556666777777777777777777774333443333322 23445
Q ss_pred HhcCCHHHHHHHHHhcccC-CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhc
Q 048812 272 VKSNERDEARRLFDEMVER-NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEI 350 (645)
Q Consensus 272 ~~~g~~~~A~~~~~~m~~~-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~ 350 (645)
.+.+.+.+|+++...|... +... ..+ ++... ...+.+++-.++.+.++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~--~~l-------------------------qLqaA---IkYse~Dl~g~rsLveQl 138 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHS--RVL-------------------------QLQAA---IKYSEGDLPGSRSLVEQL 138 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHH--HHH-------------------------HHHHH---HhcccccCcchHHHHHhc
Confidence 6677777888887777642 2111 000 00000 112334555666666666
Q ss_pred C-cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-----
Q 048812 351 S-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK----- 423 (645)
Q Consensus 351 ~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----- 423 (645)
+ +.+..+.+.......+.|++++|++-|+...+. |..| ...|+..+ +..+.|+.+.|.++..++++ .|++
T Consensus 139 p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPEl 215 (459)
T KOG4340|consen 139 PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPEL 215 (459)
T ss_pred cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCcc
Confidence 5 345555555556666788888888888777654 3443 45565544 34456777788877777763 3432
Q ss_pred --------CC--------hHHHHHHHHH-------HHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHH
Q 048812 424 --------PK--------MQHYGCMVDL-------LGRAGHLEESANFITSMP----IPPDVSIWSSLLRACRCHQNVKL 476 (645)
Q Consensus 424 --------p~--------~~~~~~li~~-------~~~~g~~~~A~~~~~~m~----~~pd~~~~~~ll~a~~~~g~~~~ 476 (645)
|| .-+-+.++.+ +.+.|+++.|.+-+..|| ...|++|...+.-. -..+++..
T Consensus 216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~ 294 (459)
T KOG4340|consen 216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTE 294 (459)
T ss_pred CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccc
Confidence 11 2234455544 568899999999999995 34577777654322 23466777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 477 a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
+.+-+.-+++++|-++.++..++-+|++..-++-|..++-+
T Consensus 295 g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 295 GFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88888889999999999999999999999999988887744
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00024 Score=83.22 Aligned_cols=409 Identities=15% Similarity=0.067 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHhCCC--C-C----hhhhhhHHHHHHhc----CChHHHHHHHhhCCC--CCcccHHHHHHHHHHcCChh
Q 048812 55 DEFERIHSHLITTNLM--R-D----PQISTQVFEFLVFT----GDLGYAQQIIRQGDE--PEIKIWNSIIENQLINGYPQ 121 (645)
Q Consensus 55 ~~~~~~~~~~~~~g~~--~-~----~~~~~~ll~~~~~~----g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~ 121 (645)
..+.++.+.+.+.|+. + + .+-++.|+.-+.+. .+.+....+..+.-. -+.--+...+..+...++..
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~ 371 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQ 371 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH
Confidence 3456677778777752 1 1 24567777766543 233333333322100 00001222233333344443
Q ss_pred HHHHHHHHHhhcCchhhccCChHHHHHHHccCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHhhC--CC----CC
Q 048812 122 EVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN----RDVISWNTMISCYTSMGMYREGLGLLSKMGAE--GV----SP 191 (645)
Q Consensus 122 ~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~--g~----~p 191 (645)
.+..++...- ..+...|+++.+...++.++. .+..........+...|++++|..++...... .. .|
T Consensus 372 ~~~~ll~~~a---~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~ 448 (903)
T PRK04841 372 LLRDILLQHG---WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDG 448 (903)
T ss_pred HHHHHHHHhH---HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccch
Confidence 3332222110 223345777777777777652 22222233444556678888888888776442 10 11
Q ss_pred Chh--hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHHcCCHHHHHHHHcccCCC-----CC-
Q 048812 192 DEV--TMVSLISARTKLRDLEMGKNLHLFLEESTMKISG----SLLNYLVDMYFKCGKIGEAQKLLGRYEID-----EV- 259 (645)
Q Consensus 192 ~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----~~- 259 (645)
... ....+-..+...|+++.+...+......-...+. ...+.+...+...|++++|...+++.... .+
T Consensus 449 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 449 TLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH
Confidence 111 1112223345678888888888777653111121 23455566677788888888777663110 11
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCC
Q 048812 260 -DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISID 338 (645)
Q Consensus 260 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~ 338 (645)
...++..+...+...|++++|...+++...
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~------------------------------------------------- 559 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQ------------------------------------------------- 559 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------------
Confidence 123445556667778888888887765431
Q ss_pred cHHHHHHHHhhcCcC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhccCcHHHHH
Q 048812 339 NIELAYDLFSEISEK----NVYLWTSVIAAYAMAGHAQKAIDLFLEMEET--GTKPD--QVTFIALLSACSHGGLVDEGY 410 (645)
Q Consensus 339 ~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~ 410 (645)
+......+ ....+..+...+...|++++|...+.+.... ...|. ..++..+.......|+.++|.
T Consensus 560 -------~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 560 -------LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred -------HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 11110000 1223444555667779999998888887542 11122 233444555677789999998
Q ss_pred HHHHHhHHhcCCCCChHHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHH
Q 048812 411 DFLSKKSRVYNIKPKMQHY-----GCMVDLLGRAGHLEESANFITSMPIP--PDV----SIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 411 ~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--pd~----~~~~~ll~a~~~~g~~~~a~~ 479 (645)
+.++.......-......+ ...+..+...|+.+.|.+++...... ... ..+..+..++...|+.++|..
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 712 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEI 712 (903)
T ss_pred HHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888775321111111111 11224455688999999888765211 111 124556667888899999999
Q ss_pred HHHHHHhcC------CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 480 AFKHLTETD------PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 480 ~~~~~~~~~------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++++++.. +....++..+..+|.+.|+.++|...+.+..+..
T Consensus 713 ~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 713 ILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999888742 1122456678888899999999999888887644
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00027 Score=73.46 Aligned_cols=348 Identities=13% Similarity=0.094 Sum_probs=210.3
Q ss_pred hhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHH
Q 048812 137 LNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGK 213 (645)
Q Consensus 137 ~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (645)
+...|+.++|......-.. ++.+.|+.+.-.+-...++++|++.|+.....+ +-|...+.-+----++.++++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3456777777776665443 577899999888888999999999999988763 224445554444455677887777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CCChhhHHHH------HHHHHhcCCHHHHHHHH
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID---EVDVVLWTTL------VSGYVKSNERDEARRLF 284 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~~~l------i~~~~~~g~~~~A~~~~ 284 (645)
..-....+.. +.....|..+.-++.-.|+...|..+.+..... .|+...+.-. .......|..++|++-+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6666666543 445667888888888899999999888765332 2444443332 23456678888888877
Q ss_pred HhcccC--CchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhHHHH
Q 048812 285 DEMVER--NLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTS 360 (645)
Q Consensus 285 ~~m~~~--~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~ 360 (645)
..-... |-..+-- . -....+..+++++|..++..... ||-.-|+-
T Consensus 209 ~~~e~~i~Dkla~~e---------------------------~----ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~ 257 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEE---------------------------T----KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYE 257 (700)
T ss_pred HhhhhHHHHHHHHhh---------------------------h----HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHH
Confidence 654311 1110000 0 00001112267888888877665 44444444
Q ss_pred H-HHHHHHcCCHHHHH-HHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 048812 361 V-IAAYAMAGHAQKAI-DLFLEMEETGTKPDQV-TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437 (645)
Q Consensus 361 l-i~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 437 (645)
. ..++.+--+.-+++ .+|....+. .|-.. .-..=++........+...+++..+. ..|+.+- +..+...|-
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p~v---f~dl~SLyk 331 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVPSV---FKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCCch---hhhhHHHHh
Confidence 3 34443333334444 566655543 11111 00011111222333344445555555 3565443 223333332
Q ss_pred HcCCHHH----HHHHHHhC-C------------CCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 438 RAGHLEE----SANFITSM-P------------IPPDVSIWSSL--LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 438 ~~g~~~~----A~~~~~~m-~------------~~pd~~~~~~l--l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
.-...+= +.++...+ + -+|....|... +..+-+.|+++.|+...+.+++.-|.-...|.+-
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~K 411 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVK 411 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHH
Confidence 2211111 11222222 1 25777777764 4457889999999999999999999988999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+.++.-.|.+++|...+++.++.+.
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999999988764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00036 Score=67.16 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=116.5
Q ss_pred CCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcH
Q 048812 335 ISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH-------AQKAIDLFLEMEETGTKPDQV-TFIALLSACSHGGLV 406 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~ 406 (645)
+..+++.+|..+.....+.+..-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.+ --.++.+++.-..++
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 344588899888887766554444332333344443 445666665444444433321 122344455556678
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HHhcCChHHHHHHHHH
Q 048812 407 DEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI--PPDVSIWSSLLRA-CRCHQNVKLAEHAFKH 483 (645)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~pd~~~~~~ll~a-~~~~g~~~~a~~~~~~ 483 (645)
++..-++.++. .+-..-|...|| +..+++..|.+.+|+++|-.+.. -.|..+|.+++.- |.+.+.++.|-.++
T Consensus 376 ddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~-- 451 (557)
T KOG3785|consen 376 DDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM-- 451 (557)
T ss_pred HHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH--
Confidence 88888888887 455555665554 77899999999999999988732 1366777766655 56677887776554
Q ss_pred HHhcC-CCCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 484 LTETD-PLNDG-AHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 484 ~~~~~-p~~~~-~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+..+ |.+.. ....+.+-|.+++.+--|.+.|+.+...+
T Consensus 452 -lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 452 -LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred -HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 4433 33322 33356778889999988999999887655
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0003 Score=76.26 Aligned_cols=157 Identities=15% Similarity=0.275 Sum_probs=119.4
Q ss_pred cHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 339 NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 339 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
+++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. -|...|..++.++++.|.+++-.+++...+
T Consensus 1090 ~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR- 1160 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR- 1160 (1666)
T ss_pred hHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-
Confidence 3444444433333 3357999999999999999999887432 367889999999999999999999987666
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 419 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+..-.|.+. +.||-+|++.+++.+-++++.- |+..-...+..-|...|.++.|.-++..+ ..|..|
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~L 1226 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKL 1226 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHH
Confidence 445555544 5899999999999998888753 78888888899999999999999888644 456667
Q ss_pred HHHHHHcCCchHHHHHHHHH
Q 048812 499 ANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m 518 (645)
...+...|.+..|...-++.
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 77777777777666554433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00088 Score=71.09 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
.=+++|.++++-+.+..|++..+|..--.+|.+.|++--|.+.+.
T Consensus 471 dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred cHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 357889999999999999999999999999999999988877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-07 Score=58.32 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 421 NIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 421 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.8e-06 Score=80.08 Aligned_cols=222 Identities=20% Similarity=0.188 Sum_probs=129.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK-ISGSLLNYLVDMY 238 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y 238 (645)
...-+.++|...|+++.++ .+..... .|.......+...+....+-+.+..-+...+..... .+..+.-....+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4455677888888877654 3333332 666666666665555544444444444333323322 3334444445677
Q ss_pred HHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCc-hhHHHHHHhhhccCCchhhhhhccc
Q 048812 239 FKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCASI 317 (645)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~t~~~ll~~~~~~~~~~~~~a~~~~ 317 (645)
...|++++|.+++.. . .+.......+..|.+.++++.|.+.++.|.+.+. .+.+.+..+|+.
T Consensus 113 ~~~~~~~~AL~~l~~--~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~------------- 175 (290)
T PF04733_consen 113 FHEGDYEEALKLLHK--G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN------------- 175 (290)
T ss_dssp CCCCHHHHHHCCCTT--T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH-------------
T ss_pred HHcCCHHHHHHHHHc--c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-------------
Confidence 788999999999887 3 5677777888999999999999999999985442 233333322221
Q ss_pred cchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048812 318 GALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394 (645)
Q Consensus 318 ~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 394 (645)
+...+ +.+.+|..+|+++.+ +++.+.|.+..++...|++++|.+++.+..... +-|..|+.
T Consensus 176 ------------l~~g~---e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~La 239 (290)
T PF04733_consen 176 ------------LATGG---EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLA 239 (290)
T ss_dssp ------------HHHTT---TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHH
T ss_pred ------------HHhCc---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHH
Confidence 01111 355666666666654 345556666666667777777777766655432 22355666
Q ss_pred HHHHHHhccCcH-HHHHHHHHHhHH
Q 048812 395 ALLSACSHGGLV-DEGYDFLSKKSR 418 (645)
Q Consensus 395 ~ll~a~~~~g~~-~~a~~~~~~~~~ 418 (645)
.++.+....|+. +.+.+++.++..
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666665 555666666664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00054 Score=65.76 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=88.6
Q ss_pred hHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCC
Q 048812 78 QVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSII---ENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLP 154 (645)
Q Consensus 78 ~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~ 154 (645)
-|-+.+...|.+.+|+.-|....+-|+..|-++- ..|...|+...|+.-+.++++..
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-------------------- 102 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK-------------------- 102 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--------------------
Confidence 3445566778888999888888777766666553 46666677666665555554321
Q ss_pred CCCcchHHHH---HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 048812 155 NRDVISWNTM---ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231 (645)
Q Consensus 155 ~~~~~~~n~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 231 (645)
||- +.+- ...+.++|.+++|..=|+..+.. .|+..+- ..+..+.--.++-. ..
T Consensus 103 -pDF--~~ARiQRg~vllK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~~~~e~~----------------~l 158 (504)
T KOG0624|consen 103 -PDF--MAARIQRGVVLLKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLALIQEHW----------------VL 158 (504)
T ss_pred -ccH--HHHHHHhchhhhhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHHhHHHHH----------------HH
Confidence 221 1111 12356677777777777777765 3332211 11111111111111 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
-..+..+...|+...|......+....| |...+..-..+|...|.+..|+.-++.
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1122334445666666666665333333 556666666777777777777655443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-07 Score=58.61 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=28.4
Q ss_pred hCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC
Q 048812 67 TNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD 100 (645)
Q Consensus 67 ~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 100 (645)
.|+.||..+||.||+.|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=76.30 Aligned_cols=167 Identities=16% Similarity=0.023 Sum_probs=123.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-H
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ----VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-Q 427 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~ 427 (645)
.....+..+...+...|++++|+..|++.... .|+. .++..+..++...|++++|...++.+.+.+.-.|.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 34566777888888999999999999988764 3432 466777788888999999999999988644333332 2
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCCCH-HHHH-----------------HHHHHHHhcCChHHHHHH
Q 048812 428 HYGCMVDLLGRA--------GHLEESANFITSM-PIPPDV-SIWS-----------------SLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 428 ~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~pd~-~~~~-----------------~ll~a~~~~g~~~~a~~~ 480 (645)
.+..+...+... |+.++|.+.++++ ...|+. ..+. .+...+...|+++.|...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 344455555544 7788899888876 233432 2221 344557788999999999
Q ss_pred HHHHHhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 481 FKHLTETDPLN---DGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 481 ~~~~~~~~p~~---~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
++++++..|++ +..+..++.+|...|++++|..+++.+..+
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999987654 468899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00045 Score=70.41 Aligned_cols=373 Identities=14% Similarity=0.076 Sum_probs=208.9
Q ss_pred chhhccCChHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChH
Q 048812 135 VLLNKCGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLE 210 (645)
Q Consensus 135 ~~~~~~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~ 210 (645)
+.....|++++|...|.+.. .+|.+.|..=..+|+..|++++|++=-.+-++. .|+- -.|+-.-.++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 34456799999999998643 468888999999999999999998776666654 6664 37888888888899999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH-HHHHHcccCCCCCChhhHHHH-----HHHHHhcCCHHHHHHHH
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE-AQKLLGRYEIDEVDVVLWTTL-----VSGYVKSNERDEARRLF 284 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~m~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~ 284 (645)
+|..-|..-++.. +.+...++.|.+++ ..+. +.+.|.. ...|..+ ...+...-.+..-++.+
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~-------p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTK-------PYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccC-------cHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 9999998877765 66777888888887 1221 1222221 1222211 12222222222222222
Q ss_pred HhcccC-C-chhHHHHHHhhhcc-C-Cchhh-------hhh------------ccccchhh---HHHHH---HHHHHcCC
Q 048812 285 DEMVER-N-LISWTLMISGMLNQ-D-AEFKY-------KSC------------ASIGALYH---GIWVH---VYIKKNQI 335 (645)
Q Consensus 285 ~~m~~~-~-~~t~~~ll~~~~~~-~-~~~~~-------~a~------------~~~~~l~~---g~~i~---~~~~~~~~ 335 (645)
..-+.. + ......++.+.... + +...+ .++ ...++... .+..+ ..+.....
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 111100 0 00001111111000 0 00000 000 00001000 00000 11111112
Q ss_pred CCCcHHHHHHHHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HHHHHHHHHHHhccCcHH
Q 048812 336 SIDNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK--PD----QVTFIALLSACSHGGLVD 407 (645)
Q Consensus 336 ~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd----~~t~~~ll~a~~~~g~~~ 407 (645)
...+.+.|.+-++...+ .++.-++....+|...|.+.+....-....+.|-. -| ...+..+-.++.+.++++
T Consensus 236 kkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred HhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 22245555555543332 33444566667788888777766666555554422 01 112233344566677888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHH-------------------------HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHH
Q 048812 408 EGYDFLSKKSRVYNIKPKMQHYG-------------------------CMVDLLGRAGHLEESANFITSM-PIPP-DVSI 460 (645)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~ 460 (645)
.|+++|.+....+. .|+...-. .=...+.+.|++.+|.+.+.++ ...| |...
T Consensus 316 ~ai~~~~kaLte~R-t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 316 GAIKYYQKALTEHR-TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 88888887664332 33321100 0123456677888888877776 3334 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|..-..+|.+.|++..|+.-.+..++++|+....|.--+.++....+|++|.+.+++-.+.+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777778888888888888888888888877777777777777778888888877765543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0024 Score=67.90 Aligned_cols=398 Identities=11% Similarity=0.079 Sum_probs=219.9
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC--C--CCccc-HHHHHHHHHH-cC
Q 048812 45 IMVERSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--E--PEIKI-WNSIIENQLI-NG 118 (645)
Q Consensus 45 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~--~~~~~-~~~li~~~~~-~g 118 (645)
...+..||.+..+-+.++.....-+ .....|+.+-..|+.+|.-..|..+.+.-. + |+..+ +-..-..|.+ -+
T Consensus 330 t~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 330 TFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 4445667999988888888875543 456789999999999999999999998643 3 33232 2222233332 35
Q ss_pred ChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHh-----------cCChHHHHHHHHHHhhC
Q 048812 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS-----------MGMYREGLGLLSKMGAE 187 (645)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~-----------~g~~~~A~~~~~~m~~~ 187 (645)
..++++.+-.+....- -.+++.+ ....|-.+.-+|.. .....++++.+++..+.
T Consensus 409 ~~eegldYA~kai~~~--~~~~~~l-------------~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLL--GGQRSHL-------------KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hhhhHHHHHHHHHHHh--hhhhhhh-------------hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 5666666555554310 0011111 11122222222211 11123444444444433
Q ss_pred C-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-------
Q 048812 188 G-VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV------- 259 (645)
Q Consensus 188 g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~------- 259 (645)
+ -.|+..-|.++ -++..++++.|.+...+..+.+-..+...|.-|.-.+.-.+++.+|..+.+......+
T Consensus 474 d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 474 DPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred CCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 2 12222222222 2334445555555555555554344455555554445555555555554443111000
Q ss_pred --------------ChhhHHHHHHHHH------hcCCHHHHHHHHHhcc----c-CC-chhHHHHHHhhhccCCchhhhh
Q 048812 260 --------------DVVLWTTLVSGYV------KSNERDEARRLFDEMV----E-RN-LISWTLMISGMLNQDAEFKYKS 313 (645)
Q Consensus 260 --------------~~~~~~~li~~~~------~~g~~~~A~~~~~~m~----~-~~-~~t~~~ll~~~~~~~~~~~~~a 313 (645)
-..|...++..+- +.+.-...+++...+. + .| +.++..+.+ .++.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a~-------- 622 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVAS-------- 622 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHHh--------
Confidence 1122222332221 2333444555555554 1 11 122222221 1000
Q ss_pred hccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048812 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKN------VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387 (645)
Q Consensus 314 ~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 387 (645)
..... ..+.....+...+.|+ ...|......+...+..++|...+.+.... ..
T Consensus 623 ---------------~~~~~-----~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~ 681 (799)
T KOG4162|consen 623 ---------------QLKSA-----GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DP 681 (799)
T ss_pred ---------------hhhhc-----ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-ch
Confidence 00000 0111122222222333 234666677788889999998877776653 22
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHHHH
Q 048812 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESAN--FITSM-PIPP-DVSIWS 462 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-d~~~~~ 462 (645)
-....|......+...|..++|.+.|.... -+.|+ +....++..++.+.|+..-|.+ ++..+ .+.| +...|-
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 234455555556677889999999998766 37886 7788999999999998777776 77776 5666 677999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
.|...+.+.|+.+.|...|....++++.+|.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999877653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00037 Score=71.85 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=80.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 048812 171 MGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQK 249 (645)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 249 (645)
.+....+.+.+.. ..+..|+. .....+...+...|+++.|.+.+...++.. +.+...+..+...|...|++++|..
T Consensus 93 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 93 SGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred ccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555544 11223333 233445567778899999999999998876 5567778888899999999999999
Q ss_pred HHcccCCCCC---Ch--hhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 250 LLGRYEIDEV---DV--VLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 250 ~~~~m~~~~~---~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.+++.....| +. ..|..+...+...|++++|..+|++..
T Consensus 170 ~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 170 FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9887433222 22 245577888899999999999998875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=87.51 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...|.++++.-...|.-+...++|++..+. .--...|..|...|.+.+..++|.++++.|.+.++ -....|...++
T Consensus 1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYAD 1572 (1710)
T ss_pred HHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHH
Confidence 356888888888888888889999998874 22246688889999999999999999999998777 67788999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 435 LLGRAGHLEESANFITSM-PIPP---DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p---d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
.+.+...-++|..++.+. ..-| ......-.+.--.++|+.++|..+|+..+.-.|.....|..++++-.+.|..+.
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH
Confidence 999999999999998875 3333 344555556666789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 048812 511 MSRIRMKLRDMGLK 524 (645)
Q Consensus 511 a~~~~~~m~~~~~~ 524 (645)
++.+|++....++.
T Consensus 1653 vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999887753
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-05 Score=83.21 Aligned_cols=220 Identities=14% Similarity=0.144 Sum_probs=135.1
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhh
Q 048812 224 MKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGML 303 (645)
Q Consensus 224 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~ 303 (645)
++|-...--.+...+.++|-...|..+|++ ...|...|.+|...|+..+|..+..+-.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er-------lemw~~vi~CY~~lg~~~kaeei~~q~lek------------- 453 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER-------LEMWDPVILCYLLLGQHGKAEEINRQELEK------------- 453 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh-------HHHHHHHHHHHHHhcccchHHHHHHHHhcC-------------
Confidence 455555666678889999999999999998 567888999999999988888887665532
Q ss_pred ccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 304 NQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 304 ~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
+||...|..+.......--+++|.++++..-.
T Consensus 454 ------------------------------------------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sa 485 (777)
T KOG1128|consen 454 ------------------------------------------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISA 485 (777)
T ss_pred ------------------------------------------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhH
Confidence 23334444444444444445555555544322
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHH
Q 048812 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSI 460 (645)
Q Consensus 384 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~ 460 (645)
. .-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+..+..+.++++.|.+.|..- ...|| ...
T Consensus 486 r-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 486 R-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred H-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 1 000111111224566666666655442 333 3455555555566666666666666554 44554 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
||.+-.+|.+.|+-.+|...++++++-+-.+...+...+-...+.|.|++|.+.+.++.+.
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7777777777777777777777777765555555555555566777777777777766554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0037 Score=64.61 Aligned_cols=422 Identities=13% Similarity=0.072 Sum_probs=215.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHH--HHHH--HHcCChhHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSI--IENQ--LINGYPQEVFAIY 127 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l--i~~~--~~~g~~~~A~~~~ 127 (645)
+.+++|.+.-..++..+ +-++.....=+-+..+.+.+++|..+.+.-.... +++.. =.+| .+.+..++|+..+
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHHHH
Confidence 56777777777777665 4455556666666777778888876655433111 11111 2333 3667777777777
Q ss_pred HHHhhcC--------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 048812 128 LYLVTRT--------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSL 199 (645)
Q Consensus 128 ~~m~~~~--------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (645)
......+ ..+.+.|++++|..++..+.+.+...+...+.+-+-.-- .++.. ..|......| ..||..+
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~~~q~v~~v~-e~syel~ 178 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-QLLQSVPEVP-EDSYELL 178 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-HHHHhccCCC-cchHHHH
Confidence 7333322 444577788888888877765444444443332211100 01111 1233332333 2344443
Q ss_pred HH---HHhcCCChHHHHHHHHHHHHhCC----CCc---h------h-HHHHHHHHHHHcCCHHHHHHHHcccCCCCC-Ch
Q 048812 200 IS---ARTKLRDLEMGKNLHLFLEESTM----KIS---G------S-LLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DV 261 (645)
Q Consensus 200 l~---~~~~~~~~~~a~~~~~~~~~~g~----~~~---~------~-~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~ 261 (645)
.+ .+...|++..|++++....+.+. ..| . . +---|.-.+-..|+.++|..++.......+ |.
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 33 34466778888887777733221 000 0 0 111234455667888888887776433322 32
Q ss_pred ----hhHHHHHHHHHhcCCHH-HHHHHHHhcc---------------cCCchhHHHHHHhhhccCCchhhhhhccccchh
Q 048812 262 ----VLWTTLVSGYVKSNERD-EARRLFDEMV---------------ERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321 (645)
Q Consensus 262 ----~~~~~li~~~~~~g~~~-~A~~~~~~m~---------------~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~ 321 (645)
+.-|.|+..-....-++ .++..++... .....-=+.++..|...++..- ..|+.+....
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r-~~~a~lp~~~ 337 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR-ELSASLPGMS 337 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHhCCccC
Confidence 22333333322222222 2233333222 1111111222222222110000 1122111111
Q ss_pred hHHHHHHHHHHcCCC-CCcHHHHHHHHh----hcCcCChhHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCC
Q 048812 322 HGIWVHVYIKKNQIS-IDNIELAYDLFS----EISEKNVYLWTSVIAAYAMAGHAQKAIDLFL--------EMEETGTKP 388 (645)
Q Consensus 322 ~g~~i~~~~~~~~~~-~~~~~~A~~~f~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~p 388 (645)
.-..+-..+.+.... ......|..++. .-+....+.--.++......|+++.|++++. ...+.+..|
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 000000000000000 001223333332 2223334566677888889999999999999 666655666
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CC----hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIK-PK----MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIW 461 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~ 461 (645)
-.+ ..+..-+.+.++.+.|..++.+....+... +. ...+.-++..-.+.|+-++|..+++++ . .++|..+.
T Consensus 418 ~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 418 GTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred hHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 544 455566777777777777777666432211 11 233344445556789999999999998 3 55788899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHL 484 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~ 484 (645)
..++.+|+.. |.+.|+.+-+++
T Consensus 496 ~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 496 VQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999876 678888776665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.4e-05 Score=70.27 Aligned_cols=146 Identities=10% Similarity=0.114 Sum_probs=115.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcC
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAG 440 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 440 (645)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..| +...|..|...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4578899999887555433221 11 022236677777777777664 345 6889999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 441 HLEESANFITSM-PIPP-DVSIWSSLLRAC-RCHQN--VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 441 ~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~-~~~g~--~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
++++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..|+..+...|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999987 4555 667788888774 67777 599999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 048812 516 MKLRDMG 522 (645)
Q Consensus 516 ~~m~~~~ 522 (645)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9997754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00023 Score=71.02 Aligned_cols=137 Identities=10% Similarity=0.091 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
+|..+|+...-.+...|++++|++.++++++.... |...|+.....+.+.+... +.
T Consensus 140 kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~-------------~~---------- 195 (320)
T PLN02789 140 KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG-------------GL---------- 195 (320)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc-------------cc----------
Confidence 56777887777777888888888888888876544 3444444333333221100 00
Q ss_pred HHHHHHcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 433 VDLLGRAGHLEESANFITS-MPIPP-DVSIWSSLLRACRCH----QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~-m~~~p-d~~~~~~ll~a~~~~----g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
....+++.++..+ +...| |...|+-+...+... ++..+|...+.++.+.+|.++.+...|+++|+...
T Consensus 196 ------~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 196 ------EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred ------cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 0011223333322 23333 455666666666553 34466778888887788888888888888887632
Q ss_pred ------------------CchHHHHHHHHHH
Q 048812 507 ------------------RLDDMSRIRMKLR 519 (645)
Q Consensus 507 ------------------~~~~a~~~~~~m~ 519 (645)
..++|.++.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 270 QPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2356777777773
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=68.64 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 048812 377 LFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI 454 (645)
Q Consensus 377 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 454 (645)
+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. ..
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4444443 33443 44455666777777777777777663 445 4666777777777777777777777776 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 455 PP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 455 ~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
.| +...|..+..++...|+.++|...+++++++.|+++..+....++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34 56677777778888888888888888888888888777766655543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.01 Score=63.51 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=135.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC-------------CCCcccHHHHHHHHHHcC
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD-------------EPEIKIWNSIIENQLING 118 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-------------~~~~~~~~~li~~~~~~g 118 (645)
|+.+.|.+-...+. +-.+|..+.+|+.+..+++-|.-.+-.|. .++ ..=........+.|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 78888776665553 45789999999999888888877776664 222 22222233336789
Q ss_pred ChhHHHHHHHHHhhcC---chhhccCChHHHHHHHccCCCC-CcchHHHHHHHHHhcCChHHHHHHHHH----------H
Q 048812 119 YPQEVFAIYLYLVTRT---VLLNKCGKLKEVCQLFDKLPNR-DVISWNTMISCYTSMGMYREGLGLLSK----------M 184 (645)
Q Consensus 119 ~~~~A~~~~~~m~~~~---~~~~~~g~~~~A~~~f~~m~~~-~~~~~n~li~~~~~~g~~~~A~~~~~~----------m 184 (645)
-.++|+.+|++-.+.+ .+|-..|.+++|.++-+.-..- =..+|..-..-+-..++.+.|++.|++ |
T Consensus 815 MlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999998866 8888999999998876542211 012344444444455667777776664 2
Q ss_pred hhCC---------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccC
Q 048812 185 GAEG---------VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYE 255 (645)
Q Consensus 185 ~~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 255 (645)
+... -.-|...|.-........|+.+.|..+|..+.. |-+++...|-.|+.++|-++-++
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-- 963 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-- 963 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh--
Confidence 2221 012344455555566678899998888877653 33455555556666666666554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 048812 256 IDEVDVVLWTTLVSGYVKSNERDEARRLFDEM 287 (645)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (645)
..|....--|...|-..|++.+|...|.+.
T Consensus 964 --sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 964 --SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 234444445555666666666666666554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-06 Score=55.69 Aligned_cols=35 Identities=31% Similarity=0.559 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (645)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=55.19 Aligned_cols=34 Identities=35% Similarity=0.649 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 389 (645)
.+||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=69.37 Aligned_cols=106 Identities=9% Similarity=-0.036 Sum_probs=91.2
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+++...+ +.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++|
T Consensus 15 ~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444442 45553 556788899999999999999987 4445 678999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 490 ~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++..+..++.++...|++++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987644
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.002 Score=70.22 Aligned_cols=439 Identities=11% Similarity=0.046 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHH---HHHHHHHcCChhHHHHHHHHH
Q 048812 54 IDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNS---IIENQLINGYPQEVFAIYLYL 130 (645)
Q Consensus 54 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m 130 (645)
...+..=+...++.. +.|...|..|..+|.++|.+..|.++|++...-++.+|-. ....-.-.|.+.+|+..+...
T Consensus 578 ~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444444444 4577889999999999999999999998876444333322 122235678888888888776
Q ss_pred hhcC------------------------chhhccC-C-------------------------hHHHHHHHccCC------
Q 048812 131 VTRT------------------------VLLNKCG-K-------------------------LKEVCQLFDKLP------ 154 (645)
Q Consensus 131 ~~~~------------------------~~~~~~g-~-------------------------~~~A~~~f~~m~------ 154 (645)
...- .++.+.- - ..+|..+|-...
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 6500 0000000 0 011111111111
Q ss_pred --------------C---------------------CCcchHHHHHHHHHh----c----CChHHHHHHHHHHhhCCCCC
Q 048812 155 --------------N---------------------RDVISWNTMISCYTS----M----GMYREGLGLLSKMGAEGVSP 191 (645)
Q Consensus 155 --------------~---------------------~~~~~~n~li~~~~~----~----g~~~~A~~~~~~m~~~g~~p 191 (645)
. -+..+|..|+..|.+ . .+...|+..+.+.++. ..
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~a 814 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CA 814 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hh
Confidence 0 123345555444433 1 1123455666555543 22
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHH
Q 048812 192 DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSG 270 (645)
Q Consensus 192 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~ 270 (645)
|...|-+.+......|++.-+..-|-...... +....+|..+.-.+.+..+++.|...|.......| |.+.|--+...
T Consensus 815 nn~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali 893 (1238)
T KOG1127|consen 815 NNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALI 893 (1238)
T ss_pred ccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHh
Confidence 33333333333444444444433332222222 44555666666666677777777777776444444 56666666555
Q ss_pred HHhcCCHHHHHHHHHhcc--------cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHH
Q 048812 271 YVKSNERDEARRLFDEMV--------ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL 342 (645)
Q Consensus 271 ~~~~g~~~~A~~~~~~m~--------~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~ 342 (645)
--..|+.-+++.+|..-- -++..-|- |...-....|. +-..+...+ ......-
T Consensus 894 ~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~-----------------c~te~h~~Ng~-~e~~I~t~~-ki~sAs~ 954 (1238)
T KOG1127|consen 894 PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWL-----------------CATEIHLQNGN-IEESINTAR-KISSASL 954 (1238)
T ss_pred HHHHHHHHHHHHHHHhhHHhhccccccchhhHHH-----------------HHHHHHHhccc-hHHHHHHhh-hhhhhHH
Confidence 556666666666665411 11111111 11111111110 000000000 0001122
Q ss_pred HHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 048812 343 AYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421 (645)
Q Consensus 343 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 421 (645)
|..-|-.-...+...|.+.....-+.+.+.+|.++..+.+.. ..+-|..+|+.+. ...|++.-+..-|+......+
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak---~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK---PDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhhhcchhhHhhhhc
Confidence 222222222345677888888888888888888887775421 1234555555422 122333333333333333333
Q ss_pred CCCChHHHHHHHHHH--HHcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 422 IKPKMQHYGCMVDLL--GRAGHLEESANFITSM----PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 422 ~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m----~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
..|-.+-=..+-..+ .-.|+++++.+.|++. ..+.| ++....++-+....+.-+.|...+-+...+.|.....
T Consensus 1032 ~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~s 1111 (1238)
T KOG1127|consen 1032 KEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASS 1111 (1238)
T ss_pred ccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhh
Confidence 333221111111111 3367888888888886 22334 3345555556667778888888888888877766666
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
...|.-++.-..+-.....+.+++
T Consensus 1112 ll~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1112 LLPLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 666655555444433333344443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00012 Score=80.64 Aligned_cols=172 Identities=9% Similarity=0.006 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHHHcCCCCC-------cHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH
Q 048812 320 LYHGIWVHVYIKKNQISID-------NIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QV 391 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~-------~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ 391 (645)
-+.|+.+|..+.+.--... .+.++.....+-+ .++..+-.|.....+.|.+++|+.+++...+ ..|| ..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~ 121 (694)
T PRK15179 45 EEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSE 121 (694)
T ss_pred hhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHH
Confidence 3456777766544322222 3333333332221 3577788888888999999999999999988 5777 56
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSMP-IPP-DVSIWSSLLRAC 468 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 468 (645)
....+..++.+.+.+++|....++... ..|+ ......+..++.+.|++++|..+|++.- -.| +..+|.++..++
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l 198 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSL 198 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 677788899999999999999988874 5665 6777888889999999999999999872 334 477899999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
...|+.++|...|+++++...+-...|+.
T Consensus 199 ~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 199 TRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999966544455443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00034 Score=74.27 Aligned_cols=301 Identities=12% Similarity=0.152 Sum_probs=189.7
Q ss_pred chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC-C--------CCCChhhHHHHHHHHhc
Q 048812 135 VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-G--------VSPDEVTMVSLISARTK 205 (645)
Q Consensus 135 ~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~t~~~ll~~~~~ 205 (645)
++|...|++|.|.+-..-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .+=.-+.-....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 77888999999988776664 5678999999999998888887776666432 1 1222 222222222356
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 048812 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLF 284 (645)
Q Consensus 206 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 284 (645)
.|.+++|+.+|.+-.+.+ -|=..|-..|.+++|.++-+. ..... -.||..-..-+-..++.+.|++.|
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~--~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAET--KDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhh--ccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 789999999998877654 234567778999999999775 32221 235666666666788899999999
Q ss_pred HhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHH
Q 048812 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAA 364 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~ 364 (645)
++...+-...+ .|+. +.+..-++..+++.++....| -..-
T Consensus 882 EK~~~hafev~-rmL~-------------------------------------e~p~~~e~Yv~~~~d~~L~~W--WgqY 921 (1416)
T KOG3617|consen 882 EKAGVHAFEVF-RMLK-------------------------------------EYPKQIEQYVRRKRDESLYSW--WGQY 921 (1416)
T ss_pred HhcCChHHHHH-HHHH-------------------------------------hChHHHHHHHHhccchHHHHH--HHHH
Confidence 88654322111 1111 023333344445555544443 3344
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 444 (645)
+-..|+.+.|+.+|...+. |.+++...|-.|++++|-++-++- -|....-.|...|-..|++.+
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHH
Confidence 4568999999999987653 445666777889999998876542 355566678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-----------hhHHHHHHHHHHcCCchHHHH
Q 048812 445 SANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-----------GAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 445 A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-----------~~y~~l~~~~~~~g~~~~a~~ 513 (645)
|..+|.+.+ ++..-|+-|..++--+ +++.-.+.-.|.+- ...---+.+|-++|.+.+|.+
T Consensus 986 Av~FfTrAq------afsnAIRlcKEnd~~d---~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 986 AVKFFTRAQ------AFSNAIRLCKENDMKD---RLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred HHHHHHHHH------HHHHHHHHHHhcCHHH---HHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 999998763 3444455554443222 12222222222211 112234456778888877776
Q ss_pred H
Q 048812 514 I 514 (645)
Q Consensus 514 ~ 514 (645)
+
T Consensus 1057 l 1057 (1416)
T KOG3617|consen 1057 L 1057 (1416)
T ss_pred H
Confidence 5
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00024 Score=68.42 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 431 CMVDLLGRAGHLEESANFITSM----PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
.+.+.|.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788999999999988876 3233 356888999999999999999999888877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0018 Score=61.05 Aligned_cols=380 Identities=12% Similarity=0.070 Sum_probs=208.4
Q ss_pred CHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHH-HHHHHHHcCChhHHHHHHHH
Q 048812 53 SIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNS-IIENQLINGYPQEVFAIYLY 129 (645)
Q Consensus 53 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~-li~~~~~~g~~~~A~~~~~~ 129 (645)
....+.++...-.+.. +.+..-.+.|-..|-...++..|...++++. .|...-|.. -...+-+.+.+.+|+.+...
T Consensus 25 ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 25 RYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3555555555544443 2245556666677788888888888888765 333322221 12344577788888888887
Q ss_pred HhhcC-----------chhhccCChHHHHHHHccCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCChhhH
Q 048812 130 LVTRT-----------VLLNKCGKLKEVCQLFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAE-GVSPDEVTM 196 (645)
Q Consensus 130 m~~~~-----------~~~~~~g~~~~A~~~f~~m~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~ 196 (645)
|...+ .+.-..+++..++.+.++.+ +.+..+-+...-...+.|++++|++-|+...+- |.. ....|
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAY 182 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAY 182 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHH
Confidence 77644 33335677778888888888 456666666666677889999999999888765 444 45567
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC---------------h
Q 048812 197 VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD---------------V 261 (645)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---------------~ 261 (645)
+..+ +..+.++...|.....+++..|+...+...- | |.+..+| +
T Consensus 183 niAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI---------G-----------m~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 183 NLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI---------G-----------MTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------c-----------ceeccCchhcccchHHHHHHHHH
Confidence 7655 4456688999999999999888653332111 0 0111121 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHH
Q 048812 262 VLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIE 341 (645)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~ 341 (645)
..+|.-...+.+.|+++.|.+.+..|+..+..
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~------------------------------------------------ 273 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE------------------------------------------------ 273 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccc------------------------------------------------
Confidence 23444445566778888888888877632211
Q ss_pred HHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 048812 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421 (645)
Q Consensus 342 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 421 (645)
+-|.+|...+.-. -..+++.+..+-+.-+..... --..||..++-.||+..-++.|-.++.+-.. ..
T Consensus 274 ----------elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~-lT 340 (459)
T KOG4340|consen 274 ----------ELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAH-LT 340 (459)
T ss_pred ----------cCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hh
Confidence 1233333222111 113444444444444444322 2356888888888888877777776643220 00
Q ss_pred CC-CChHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChH----HHHHHHHHHHhcCCCCchh
Q 048812 422 IK-PKMQHYGCMVDLLGR-AGHLEESANFITSMPIPPDVSIWSSLLRA-CRCHQNVK----LAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 422 ~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~pd~~~~~~ll~a-~~~~g~~~----~a~~~~~~~~~~~p~~~~~ 494 (645)
.. .+...|+ |++++.- .-..++|++-++.+...-....-..-+.. -.++.+-+ .+.+-+++.+++.- .+
T Consensus 341 yk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PV 416 (459)
T KOG4340|consen 341 YKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PV 416 (459)
T ss_pred HHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HH
Confidence 00 1122222 3333332 33556666555443110000000111111 01111211 22233333333221 23
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...-...|.+..++..++++|..-.+
T Consensus 417 lMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 417 LMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHh
Confidence 44556778888889999998876544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00014 Score=74.60 Aligned_cols=187 Identities=18% Similarity=0.198 Sum_probs=125.3
Q ss_pred HHhcCChHHHHHHHhhCCC--C-CcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcc
Q 048812 83 LVFTGDLGYAQQIIRQGDE--P-EIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVI 159 (645)
Q Consensus 83 ~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~ 159 (645)
+.+.|++.+|.-.|+.... | +...|--|....+.+++-..|+..+++.. ++...|..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl--------------------~LdP~Nle 354 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL--------------------ELDPTNLE 354 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH--------------------hcCCccHH
Confidence 3455666666666665432 2 34556666665555555444544444432 12234667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--------CChhhHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCCchhH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVS--------PDEVTMVSLISARTKLRDLEMGKNLHLFLEE-STMKISGSL 230 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~ 230 (645)
+.-+|.-.|...|.-.+|+++++.-+....+ ++..+-.. +.......+....++|-.+.. .+..+|+.+
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 7778888899999999999999887654211 00000000 122222334455566655544 444588899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc--cCC
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV--ERN 291 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~ 291 (645)
...|.-.|--.|+++.|...|+.....+| |...||-|...++...+.++|+..|.+.. +|+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998766677 78899999999999999999999999886 454
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.019 Score=67.30 Aligned_cols=358 Identities=11% Similarity=0.000 Sum_probs=202.7
Q ss_pred ccHHHHHHHHHHcC----ChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcch--HHHHHHHHHhcCChHHHH
Q 048812 105 KIWNSIIENQLING----YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS--WNTMISCYTSMGMYREGL 178 (645)
Q Consensus 105 ~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~--~n~li~~~~~~g~~~~A~ 178 (645)
+.|+.++..+++.. .+.+..++..+.- ..+...|++.+|..........+... ...........|+++.+.
T Consensus 318 yr~H~L~r~~l~~~l~~~~~~~~~~lh~raa---~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~ 394 (903)
T PRK04841 318 FRYHPLFASFLRHRCQWELAQELPELHRAAA---EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLE 394 (903)
T ss_pred EehhHHHHHHHHHHHHhcCchHHHHHHHHHH---HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHH
Confidence 45677776665432 3444444444332 22445677777777666665432221 111122344567777766
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC------CCc--hhHHHHHHHHHHHcCCHHHHHHH
Q 048812 179 GLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM------KIS--GSLLNYLVDMYFKCGKIGEAQKL 250 (645)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~ 250 (645)
+.+..+.......+..........+...++++++...+..+...-- .+. ......+...+...|++++|...
T Consensus 395 ~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 474 (903)
T PRK04841 395 ECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERL 474 (903)
T ss_pred HHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666653221111222222233344566788888777776654310 111 11222233455677888888877
Q ss_pred HcccCC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHH
Q 048812 251 LGRYEI--DEVD----VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324 (645)
Q Consensus 251 ~~~m~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~ 324 (645)
+++... ...+ ...++.+...+...|++++|...+++....
T Consensus 475 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~---------------------------------- 520 (903)
T PRK04841 475 AELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM---------------------------------- 520 (903)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------------
Confidence 766321 1112 123455556667788888888777665421
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHhhcCcC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHH
Q 048812 325 WVHVYIKKNQISIDNIELAYDLFSEISEK--NVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTK--P-DQVTFIA 395 (645)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-d~~t~~~ 395 (645)
......+ -..+++.+...+...|++++|...+++.... |.. | ....+..
T Consensus 521 ----------------------~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 521 ----------------------ARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred ----------------------HhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 1111011 1234456667788899999999998886642 221 1 2233444
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcC-CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHH-----H
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYN-IKP--KMQHYGCMVDLLGRAGHLEESANFITSM----PIPPDVSIWS-----S 463 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd~~~~~-----~ 463 (645)
+...+...|++++|...+++...... ..+ ....+..+...+...|++++|.+.+++. ........+. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 45566778999999999888763211 112 2344555667888999999999887765 1111111111 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGA----HVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~----y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+..+...|+.+.|...+.......+..... +..+..++...|++++|...+++....
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2234556899999999987766533222211 356788899999999999999887653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.6e-06 Score=52.30 Aligned_cols=33 Identities=39% Similarity=0.632 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP 388 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 388 (645)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.1e-06 Score=52.50 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 048812 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191 (645)
Q Consensus 158 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (645)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00051 Score=69.37 Aligned_cols=186 Identities=18% Similarity=0.117 Sum_probs=133.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCc------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISE------KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 401 (645)
.++..+.+..+++.+++..-+.++. ++...+...+.+.........+-.++. +... ..-...-|..-+ ...
T Consensus 241 ~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~ 317 (484)
T COG4783 241 EYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTY 317 (484)
T ss_pred hHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHH
Confidence 4555666777788888888887775 344555566655443333333333322 2222 111223333333 455
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAE 478 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~ 478 (645)
..|..++|+..++.+... .| |+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 678999999999998853 45 5667778889999999999999999987 55666 677888899999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 479 HAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 479 ~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
.+++.....+|+++..|..|..+|...|+..++...+.++-
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999998888877777666553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00089 Score=75.36 Aligned_cols=163 Identities=10% Similarity=0.159 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
..|..|...|.+.+++++|.++|+.|.+. ..-....|...+..+.+...-+.|..++..+.+...-.-.+....-.+++
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 45778889999999999999999999875 44567788899999999999999999999888532111135556677788
Q ss_pred HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCch-hHHHHHHHHHHcCCchH
Q 048812 436 LGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD--PLNDG-AHVLLANIYAKAGRLDD 510 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~-~y~~l~~~~~~~g~~~~ 510 (645)
-.+.|+.+.+..+|+.. ..+.-.-.|+.++..-.++|+.+.++.+|++++.+. |.... .|--.+..--+.|+-+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999886 222345689999999999999999999999999865 43333 44455555556677666
Q ss_pred HHHHHHHHH
Q 048812 511 MSRIRMKLR 519 (645)
Q Consensus 511 a~~~~~~m~ 519 (645)
++.+-.+..
T Consensus 1690 vE~VKarA~ 1698 (1710)
T KOG1070|consen 1690 VEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00014 Score=67.63 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSS 463 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ 463 (645)
..|+......+-.++.-.|+-+.+..+....... -.-+......++....+.|++.+|...|++. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4554333356667777888888888877765532 2234556667888999999999999999987 45678889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+.-+|-+.|+.+.|...+.+.+++.|.++..+..|.-.|.-.|++++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998876644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=8e-05 Score=64.45 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
....-.+...+...|++++|.++|+-+ ...| +..-|-.|..+|...|++++|+..|.++..++|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455556667778899999999999887 4445 56788999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 048812 504 KAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 504 ~~g~~~~a~~~~~~m~~ 520 (645)
..|+.+.|++.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998755
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00016 Score=67.20 Aligned_cols=128 Identities=12% Similarity=-0.021 Sum_probs=85.7
Q ss_pred cCChHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH-hcCCC--hHHHH
Q 048812 140 CGKLKEVCQLFDKLP---NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR-TKLRD--LEMGK 213 (645)
Q Consensus 140 ~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~--~~~a~ 213 (645)
.++.+++...++... ..|...|..|...|...|++++|+..|++..+.. +-+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344555555554433 2467788888888888888888888888887763 22445666666553 55565 47888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
+++..+++.+ +.+..++..+...+.+.|++++|...|+.+....|.......+|.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 8888888776 556777777888888888888888888875444443333344443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=75.12 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=40.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
+..+||.+-.+|.+.|+-.+|...+.+..+.. .-+...+-+.+....+.|.+++|.+.+.++..
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 34567777777777777777777777776655 22334444445555666777777776666653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=63.87 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=74.3
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 422 IKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 422 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 445566667777778888888777775 3333 566777777778888888888888888888888888888888
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
..+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888777653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0015 Score=72.90 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
-+.++--|-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34556666677888999999999999999999999888877887776
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0008 Score=62.63 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH
Q 048812 359 TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR 438 (645)
Q Consensus 359 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 438 (645)
...-..+-..|+.+.+..+..+.... ..-|..............|++.+|...|++..+ .-.+|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 45566777788888888777665432 223444555677888889999999999988874 334578899999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 048812 439 AGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 439 ~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
.|++++|..-|.+. .+.| ++...+.|.-.+.-.|+.+.|+.++.......+.++.+-..|.-+....|++++|+.+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999877765 4444 566778888888899999999999999988888888888888889999999999888753
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=73.39 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=82.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQ 472 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g 472 (645)
+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+......|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 4444555556666666666666532 243 2333555555566666666666554 2223 5556666666688888
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+.+.|+.+++++.+..|.+..+|..|+.+|...|++++|.-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999999888899999999999999999988887764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0013 Score=72.62 Aligned_cols=120 Identities=9% Similarity=0.067 Sum_probs=68.3
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCc--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISE--K-NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-VTFIALLSACSHG 403 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 403 (645)
..+.+.+...+..++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+. .....+..++...
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 3344444445566666666665543 2 3445555666666666666666666666653 4443 3334444455666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 404 GLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 404 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
|+.++|..+|+++.. -.|+ ...+..+..++-..|+.++|...|++.
T Consensus 168 g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 168 GQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred cchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666663 1232 555666666666666666666666655
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.5e-05 Score=49.10 Aligned_cols=31 Identities=32% Similarity=0.753 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0049 Score=61.64 Aligned_cols=129 Identities=11% Similarity=0.016 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLR-DLEMGKNLHLFLEESTMKISGSLLNYLVDM 237 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 237 (645)
+++.+-..+...++.++|+.++.++++. .|+.. .|+.--.++...+ +++++...+..+++.. +.+..+|+...-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3445555566677888888888888765 44443 3444444444555 5678888888887765 4455566655555
Q ss_pred HHHcCCH--HHHHHHHcccCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 048812 238 YFKCGKI--GEAQKLLGRYEID-EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291 (645)
Q Consensus 238 y~~~g~~--~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 291 (645)
+.+.|.. +++..+++.+... ..|..+|+-....+.+.|++++|++.++++.+.|
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 5556652 5667777554333 4478889998888889999999999999887654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.9e-05 Score=48.57 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 386 (645)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0037 Score=69.80 Aligned_cols=181 Identities=12% Similarity=0.137 Sum_probs=124.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 242 (645)
.++.......++.-...+...|... .-+...+-.+..+|-+.|+.+++.++++++++.. +.|+.+.|.+...|+..
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 4455555555554444444555543 2345578888899999999999999999999988 77899999999999999
Q ss_pred CHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 243 KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
++++|.+++.+ .+..|....++.++.+++.++..-++.-...++.
T Consensus 164 dL~KA~~m~~K-------------AV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~---------------------- 208 (906)
T PRK14720 164 DKEKAITYLKK-------------AIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLR---------------------- 208 (906)
T ss_pred hHHHHHHHHHH-------------HHHHHHhhhcchHHHHHHHHHHhcCcccchHHHH----------------------
Confidence 99999999887 4455888889999999999988555443222220
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 401 (645)
+...+...- ...+-+.++--+-..|-..+++++++.+++...+.... |......++.+|.
T Consensus 209 ---i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 209 ---IERKVLGHR---------------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---HHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 000111000 01244566667777888888899999999998875322 4566666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.002 Score=65.26 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI-ALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLG 437 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 437 (645)
-..-.+...|++++|+..++.+... .||..-|. .....+...++..+|.+.++.+.. ..|+ ....-.+.++|.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all 385 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHH
Confidence 3344455789999999999998875 56655555 445688999999999999999985 5776 566777889999
Q ss_pred HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 438 RAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... ...|...|+|++|....
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFL 448 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHH
Confidence 999999999999987 44458889999999999999977666554 56688889999999999
Q ss_pred HHHHhCC
Q 048812 516 MKLRDMG 522 (645)
Q Consensus 516 ~~m~~~~ 522 (645)
...+++.
T Consensus 449 ~~A~~~~ 455 (484)
T COG4783 449 MRASQQV 455 (484)
T ss_pred HHHHHhc
Confidence 8887754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.012 Score=56.93 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=166.8
Q ss_pred CCCCcHHHHHHHHhhcCcCChhHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCcHHHHH
Q 048812 335 ISIDNIELAYDLFSEISEKNVYLWTSVI---AAYAMAGHAQKAIDLFLEMEETGTKPDQVTF-IALLSACSHGGLVDEGY 410 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~g~~~~a~ 410 (645)
+..+.+.+|+.-|....+-|...|.++. ..|...|+...|+.=+.+.++ .+||-..- .--...+.+.|.+++|.
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~ 126 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAE 126 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHH
Confidence 3445788999999888887777776664 578889999999999988887 58884322 12223567899999999
Q ss_pred HHHHHhHHhcCCCCC----hHHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 048812 411 DFLSKKSRVYNIKPK----MQHYG------------CMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQ 472 (645)
Q Consensus 411 ~~~~~~~~~~~~~p~----~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g 472 (645)
.=|+...+. .|+ .+++. ..+..+.-.|+...|..++..+ .+.| |...+..=..+|...|
T Consensus 127 ~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 127 ADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 999988842 332 22222 2233456678999999998887 5555 6667777778888999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChH
Q 048812 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSE 552 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~ 552 (645)
++..|+.-++.+-++..++...+.-++.++...|+.+++....++-.+.+. .|...-
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp-----------------------dHK~Cf 260 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP-----------------------DHKLCF 260 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc-----------------------chhhHH
Confidence 999999999999999999999999999999999999988887777655331 222222
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhhhHHHHHHhhhccCCCC-CeEEEEcccccc
Q 048812 553 EIYLMLNEIEMTLQQQGLQETSLQHRERLAVAFGLISTSEK-TTIRIVNNLRIC 605 (645)
Q Consensus 553 ~~~~~l~~l~~~m~~~g~~~~~~~~se~la~~~~l~~~~~~-~~~~~~~n~~~c 605 (645)
--|..|+++...+....-.-+.....+.++..-.++.+.|. .+||+----++|
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 23444444433332221111113445667777777777666 666654434444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.07 Score=54.98 Aligned_cols=365 Identities=15% Similarity=0.110 Sum_probs=203.5
Q ss_pred HHHHHcCChhHHHHHHHHHhhcC-----------chhhccCChHHHHHHHccCCC--CC-cchHHHHHHHHHhcCChHHH
Q 048812 112 ENQLINGYPQEVFAIYLYLVTRT-----------VLLNKCGKLKEVCQLFDKLPN--RD-VISWNTMISCYTSMGMYREG 177 (645)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~g~~~~A~~~f~~m~~--~~-~~~~n~li~~~~~~g~~~~A 177 (645)
.+....|+++.|+.+|-..+..+ ..|.+.|++++|.+=-.+-.+ |+ .-.|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 34567899999999999988744 677788999888765444432 33 24688888888888999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHhcC---CChHHHHHHHHHHHHh----CCCCchhHHHHHHHH----------HHH
Q 048812 178 LGLLSKMGAEGVSPDEVTMVSLISARTKL---RDLEMGKNLHLFLEES----TMKISGSLLNYLVDM----------YFK 240 (645)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~----------y~~ 240 (645)
+.-|.+=++.. +-|...++.+..+.... ++.-..-.+|..+... +. .....|..++.. |..
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~-~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYS-LSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhh-hccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999877652 33456777787776211 0000000111111100 00 000111111111 111
Q ss_pred cCCHHHHHHHHccc--------------CCCCC------------Ch----------hhHHHHHHHHHhcCCHHHHHHHH
Q 048812 241 CGKIGEAQKLLGRY--------------EIDEV------------DV----------VLWTTLVSGYVKSNERDEARRLF 284 (645)
Q Consensus 241 ~g~~~~A~~~~~~m--------------~~~~~------------~~----------~~~~~li~~~~~~g~~~~A~~~~ 284 (645)
-..+..|..++... .+..| |. .-...+..+..+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11122222222110 00011 10 12445666667777777887777
Q ss_pred HhcccCC-chhHHHHH-HhhhccCCchhh-hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHH
Q 048812 285 DEMVERN-LISWTLMI-SGMLNQDAEFKY-KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSV 361 (645)
Q Consensus 285 ~~m~~~~-~~t~~~ll-~~~~~~~~~~~~-~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~l 361 (645)
....+.+ ..++...+ .+|...|..... ..|.. .++.|++...... .+ ..+...+
T Consensus 248 ~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~--a~E~gre~rad~k-----------------lI----ak~~~r~ 304 (539)
T KOG0548|consen 248 AKALELATDITYLNNIAAVYLERGKYAECIELCEK--AVEVGRELRADYK-----------------LI----AKALARL 304 (539)
T ss_pred HHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHH--HHHHhHHHHHHHH-----------------HH----HHHHHHh
Confidence 7665332 23333322 233333210000 11111 2222222111100 00 0112224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------------------------HHHHHHHHhccCcHHHHHHHHHHh
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVT-------------------------FIALLSACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-------------------------~~~ll~a~~~~g~~~~a~~~~~~~ 416 (645)
..+|.+.++++.|+..|.+.......||..+ ...=.+.+.+.|++..|...+.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4456666777777777776655544444332 112234566789999999999999
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 417 SRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 417 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
++. .| |...|..-.-+|.+.|.+..|++=-+.. ...|+ ...|.-=..++....+++.|.+.|++.++.+|.+..
T Consensus 385 Ikr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 385 IKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred Hhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 852 46 5888999999999999999988755543 44454 334544455566677999999999999999998876
Q ss_pred hHHHHHHHHHH
Q 048812 494 AHVLLANIYAK 504 (645)
Q Consensus 494 ~y~~l~~~~~~ 504 (645)
.-.-+.+++..
T Consensus 462 ~~~~~~rc~~a 472 (539)
T KOG0548|consen 462 AIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHH
Confidence 65555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.076 Score=54.73 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=76.0
Q ss_pred CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCC--C-CcchHHHHHHHHHhcCChHHH
Q 048812 101 EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN--R-DVISWNTMISCYTSMGMYREG 177 (645)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g~~~~A 177 (645)
+-|+.+|+.||.-+- ...+++++..++++.. | ....|..-|++-....+++..
T Consensus 17 P~di~sw~~lire~q------------------------t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~V 72 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ------------------------TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESV 72 (656)
T ss_pred CccHHHHHHHHHHHc------------------------cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHH
Confidence 458889999998752 2255666666666553 3 456788889999999999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHhc-CCChHH----HHHHHHHH-HHhCCCC-chhHHHHHHHH---------HHHc
Q 048812 178 LGLLSKMGAEGVSPDEVTMVSLISARTK-LRDLEM----GKNLHLFL-EESTMKI-SGSLLNYLVDM---------YFKC 241 (645)
Q Consensus 178 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~----a~~~~~~~-~~~g~~~-~~~~~~~li~~---------y~~~ 241 (645)
..+|.+-+..-+. ...|..-|.---+ .++... ..+.|+.. .+.|+++ ....|+..++. |...
T Consensus 73 EkLF~RCLvkvLn--lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~ 150 (656)
T KOG1914|consen 73 EKLFSRCLVKVLN--LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN 150 (656)
T ss_pred HHHHHHHHHHHhh--HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH
Confidence 9999887765333 3334333332222 222222 22333333 3445443 23345554443 4445
Q ss_pred CCHHHHHHHHccc
Q 048812 242 GKIGEAQKLLGRY 254 (645)
Q Consensus 242 g~~~~A~~~~~~m 254 (645)
.+++..+++++++
T Consensus 151 QRI~~vRriYqra 163 (656)
T KOG1914|consen 151 QRITAVRRIYQRA 163 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 5677788888885
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0011 Score=57.47 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=82.7
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 048812 377 LFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-P 453 (645)
Q Consensus 377 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 453 (645)
+|++... ..|+ ......+...+...|+.++|.+.|+.+.. ..| +...+..+...+.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 3443 34455666677788888888888888774 234 5677778888888888888888888776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 454 IPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 454 ~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
..| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 334 5677777888899999999999999999999997754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.013 Score=54.81 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=105.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH----HH
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL----GR 438 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~ 438 (645)
..|...|++++|++...... ..+.... =...+.+..+++-|.+.++.|.+ +. +-.+.+-|..++ .-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhcc
Confidence 45677888888888776521 1122222 22344566778888888888873 22 334444444443 44
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHH-HHH
Q 048812 439 AGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS-RIR 515 (645)
Q Consensus 439 ~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~-~~~ 515 (645)
.+.+.+|.-+|++| +..|+..+.+....++...|++++|+.+++.++..++.++.+...++-.-.-.|+-.++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56788999999998 377899999999999999999999999999999999999888888887777788876654 455
Q ss_pred HHHHh
Q 048812 516 MKLRD 520 (645)
Q Consensus 516 ~~m~~ 520 (645)
.+.+.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 55543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00039 Score=55.27 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
+..+...+...|++++|.+.+++. ...| +...+..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888775 3334 34667777778888899999999999998888888788888888999999
Q ss_pred CchHHHHHHHHHHh
Q 048812 507 RLDDMSRIRMKLRD 520 (645)
Q Consensus 507 ~~~~a~~~~~~m~~ 520 (645)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888877654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=57.10 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYG 430 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 430 (645)
...|..++..+. .++...+...++.+......-. ......+...+...|++++|...|+..... .-.|. ....-
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 344555555553 6666666666666665421110 122233334555666666666666666632 21121 12223
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048812 431 CMVDLLGRAGHLEESANFITSMPIP-PDVSIWSSLLRACRCHQNVKLAEHAFKH 483 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~ 483 (645)
.|...+...|++++|+..++..+.. .....+..+...+...|+.++|...|++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555556666666655554211 1223334444445555555555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0023 Score=56.27 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=88.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-h---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--hhHHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-V---TMVSLISARTKLRDLEMGKNLHLFLEESTMKIS--GSLLNY 233 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 233 (645)
.|..++..+ ..++...+...++.+.... |+. . ....+...+...|++++|...+..++.....++ ....-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 455556555 4788888888888888763 332 2 233345667788999999999999888763332 223445
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 234 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
|...+...|++++|...++...........+......|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67888889999999999987322233556677788889999999999998875
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00095 Score=56.23 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=47.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACR 469 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~ 469 (645)
+...+...|++++|.+.|..+.+.++-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33344444444455544444443211111 1223333444555555555555555443 11122 334555555566
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchh
Q 048812 470 CHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
..|+.+.|...++++++..|+++..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666666666666666666665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=67.70 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc
Q 048812 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKC 241 (645)
Q Consensus 162 n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 241 (645)
.+|+..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.++..+.++.. +.+..........+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 355666677899999999999999873 553 4457777777788888999988888654 55677777778889999
Q ss_pred CCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 242 GKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 242 g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++.+.|.++.++.....| +..+|..|..+|.+.|+++.|+..++.++
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999998655567 55699999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=8.2e-05 Score=58.49 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 440 GHLEESANFITSM----PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 440 g~~~~A~~~~~~m----~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
|++++|..+++++ +..|+...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5555555555554 2112344555566667777777777777776 5555655556666677777777777777776
Q ss_pred HH
Q 048812 516 MK 517 (645)
Q Consensus 516 ~~ 517 (645)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0053 Score=56.87 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=109.6
Q ss_pred cHHHHHHHHhhcCc--------CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCcHHH
Q 048812 339 NIELAYDLFSEISE--------KNV-YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALL-SACSHGGLVDE 408 (645)
Q Consensus 339 ~~~~A~~~f~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~ 408 (645)
+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+= .-+-..|..++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhh
Confidence 55666666655532 222 23444555556677777777777777665 2 4432221111 12334677777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 409 GYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 409 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
|.++++.+.++- +.|..+|..=+-+.-..|+--+|.+-+.+. .+..|...|.-|..-|...|+++.|.-.+++++=
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888887777531 224566655555566666666666555544 3556777888888888888888888888888888
Q ss_pred cCCCCchhHHHHHHHHHHcCC---chHHHHHHHHHHhC
Q 048812 487 TDPLNDGAHVLLANIYAKAGR---LDDMSRIRMKLRDM 521 (645)
Q Consensus 487 ~~p~~~~~y~~l~~~~~~~g~---~~~a~~~~~~m~~~ 521 (645)
+.|.++..+..+++.+.-.|- .+-|.+++.+..+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888777777777777655543 34466666665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.001 Score=56.05 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN---DGAHVLL 498 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~y~~l 498 (645)
.++-.++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...++++....|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999887 33343 3466778888999999999999999999988875 4678889
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
..+|...|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999997754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=67.41 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=46.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~ 475 (645)
.+...|++++|.+.|+++.+ +.| +...|..+..+|.+.|++++|...+++. .+.| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 33444555555555555553 233 2344444555555555555555555444 2223 3334444555555555555
Q ss_pred HHHHHHHHHHhcCCCCchhHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~ 496 (645)
+|+..|+++++++|.++....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 555555555555555544333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00026 Score=53.15 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG-RLDDMSRIRMKLRD 520 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g-~~~~a~~~~~~m~~ 520 (645)
++.+|..+...+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999988755
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.005 Score=65.86 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+..+|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|...+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555554444455666666666666666666 34566666666666666666666666654443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.079 Score=52.93 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACR 469 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~ 469 (645)
..+.+..+.-|...|....|.++-. ++.+ |+..-|-..+.+|+..|+|++-.++... +..+.-|...+.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 3455666777777888887776644 4554 8999999999999999999998887664 345688999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
..|+..+|..+..++ .+..-+.+|.++|.|.+|.+.--+.+
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999888772 22456789999999999988755443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.19 Score=51.92 Aligned_cols=406 Identities=10% Similarity=0.103 Sum_probs=233.5
Q ss_pred CChhhHHHHHhhc--CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHHHHHHH
Q 048812 39 PVSLDVIMVERSC--SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQ 114 (645)
Q Consensus 39 p~~~~~~~~l~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~ 114 (645)
-|..+|..+++-. +..++++..++.+.+. ++.++..|..-+..-.+..+++..+++|.+.. .-++..|..-|+--
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 4566788888876 5788899999988754 46678899999999999999999999999865 45777888877643
Q ss_pred HH-cCChhH----HHHHHHHHhhcC-----------------------chhhccCChHHHHHHHccCCC-C---------
Q 048812 115 LI-NGYPQE----VFAIYLYLVTRT-----------------------VLLNKCGKLKEVCQLFDKLPN-R--------- 156 (645)
Q Consensus 115 ~~-~g~~~~----A~~~~~~m~~~~-----------------------~~~~~~g~~~~A~~~f~~m~~-~--------- 156 (645)
.+ .|+... -.+.|+-.+... .-|....+++..++++.++.. |
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 32 222222 222333222210 334455577778888887753 2
Q ss_pred CcchHHHHHHHH-------HhcCChHHHHHHHHHHhh--CCCCCChhh---------------HHHHHHHHhcCCChH--
Q 048812 157 DVISWNTMISCY-------TSMGMYREGLGLLSKMGA--EGVSPDEVT---------------MVSLISARTKLRDLE-- 210 (645)
Q Consensus 157 ~~~~~n~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~~~~~-- 210 (645)
|-..|..=|... -+...+..|.++++++.. .|..-+..+ |..+|. +.+.+-+.
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksNpL~t~ 255 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcCCcccc
Confidence 222232222211 123345667777777643 243222222 322332 12221111
Q ss_pred -------HHHHHHHHH-HHhCCCCchhHHHH-----HHHHHHHcCC-------HHHHHHHHcccCCC--CCChhhHHHHH
Q 048812 211 -------MGKNLHLFL-EESTMKISGSLLNY-----LVDMYFKCGK-------IGEAQKLLGRYEID--EVDVVLWTTLV 268 (645)
Q Consensus 211 -------~a~~~~~~~-~~~g~~~~~~~~~~-----li~~y~~~g~-------~~~A~~~~~~m~~~--~~~~~~~~~li 268 (645)
...-+|++. .-.++.|+.....+ .-+.+...|+ .+++.+++++.... ..+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222 22344454432211 1123333343 56777888762111 12344444443
Q ss_pred HHHH---hcCCHHHHHHHHHhcc-----cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcH
Q 048812 269 SGYV---KSNERDEARRLFDEMV-----ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI 340 (645)
Q Consensus 269 ~~~~---~~g~~~~A~~~~~~m~-----~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~ 340 (645)
.--- .....+.....+++.. +++ .+|-..+..-.+.. .+
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~e--------------------------------Gl 382 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAE--------------------------------GL 382 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhh--------------------------------hH
Confidence 2111 1112444455555544 333 34545554444332 46
Q ss_pred HHHHHHHhhcCc-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048812 341 ELAYDLFSEISE-----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSK 415 (645)
Q Consensus 341 ~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 415 (645)
+.|+.+|.+..+ ..+...+++|.-|+ .++..-|..+|+-=.+. ..-+..--...+.-+++.++-..+..+|+.
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 677777766554 36778889998887 47788999999874432 222233345667777888899999999999
Q ss_pred hHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048812 416 KSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSM----P--IPPDVSIWSSLLRACRCHQNVKLAEHAFK 482 (645)
Q Consensus 416 ~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m----~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 482 (645)
.... ++.|+ ...|..+++-=...|++..+.++-+++ + ..|....-..+++-|...+...--..-++
T Consensus 461 ~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 461 VLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred HHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 9964 77776 689999999999999999999988776 2 22222334455666666665544333333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.28 Score=53.80 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccc
Q 048812 460 IWSSLLRACRCHQNV---KLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQ 526 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~---~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 526 (645)
+-+.|+..|++.++. -+|+-+++..+...|.|...-..|+.+|+-.|-...|.++++.+.-+.+..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 446788889988875 4677778888888999988888999999999999999999998866665543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0057 Score=55.54 Aligned_cols=131 Identities=13% Similarity=0.173 Sum_probs=92.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
....|..+...+...|++++|+..|++.......|. ...+..+...+.+.|++++|...+++..+ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445677777888888999999999988876543332 35677777888888899999888888774 344 355666
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
.+...|...|+...+..-++.. ...+++|.+.+++++..+|++ |..++..+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 6677777777766655333221 123678889999999988876 66677777766653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.25 Score=52.44 Aligned_cols=201 Identities=20% Similarity=0.165 Sum_probs=120.4
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCCC-CCcc------------cHHHHHHHHHHcCChhHHHHHHHHHhhcC--
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGDE-PEIK------------IWNSIIENQLINGYPQEVFAIYLYLVTRT-- 134 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 134 (645)
.|.+.+|..|.......-.++.|+..|-+... +.+. .-.+=|++| -|.+++|..+|-.|-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 46777887777766666677777777765442 1111 011122222 366777777777776666
Q ss_pred -chhhccCChHHHHHHHccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC
Q 048812 135 -VLLNKCGKLKEVCQLFDKLPN-----RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD 208 (645)
Q Consensus 135 -~~~~~~g~~~~A~~~f~~m~~-----~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (645)
.++.+.|++-...++++.-.. --..+|+.+..-++....+++|.+.|..-... ...+.++....+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 566666777666666654221 12346777777777777777777776543211 113333433333
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+++-+.+ ...++.+....-.+.+|+...|.-++|.+.|-+ -..|. +-+..|...++|.+|.++-+...
T Consensus 838 f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr--~s~pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 838 FGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR--RSLPK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred hhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHh--ccCcH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 3332222 123456667777788888888988888888766 44332 34567788888888888877766
Q ss_pred cCCch
Q 048812 289 ERNLI 293 (645)
Q Consensus 289 ~~~~~ 293 (645)
-|.+-
T Consensus 906 l~qv~ 910 (1189)
T KOG2041|consen 906 LPQVQ 910 (1189)
T ss_pred chhHH
Confidence 55543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00052 Score=50.80 Aligned_cols=58 Identities=28% Similarity=0.296 Sum_probs=44.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+...+...|++++|+..|+++++..|.++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888888888888888888888877553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.07 Score=50.08 Aligned_cols=172 Identities=20% Similarity=0.135 Sum_probs=101.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCC-c
Q 048812 214 NLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN-L 292 (645)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 292 (645)
++.+.+.......+......-...|++.|++++|.+.... .. +......=+..+.+..+.+-|.+.+++|.+-| .
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~--~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL--GE--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc--cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 3444444444444444444445668888889998888876 32 23333333445667778888888888888654 3
Q ss_pred hhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcC
Q 048812 293 ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAG 369 (645)
Q Consensus 293 ~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 369 (645)
.|.+.+-++|++. ......+.+|.-+|+++.+ |+..+.|-+..++...|
T Consensus 170 ~tLtQLA~awv~l----------------------------a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 170 ATLTQLAQAWVKL----------------------------ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHH----------------------------hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 4444455444321 1111256677777777766 45555566666677777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHhHH
Q 048812 370 HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE-GYDFLSKKSR 418 (645)
Q Consensus 370 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~ 418 (645)
++++|..++++..... .-|..|...++.+-.+.|...+ -.+...+++.
T Consensus 222 ~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7777777777777653 2245666666655555554433 3344455553
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0026 Score=57.84 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
...+..+...+.+.|++++|...+++. ...|+ ...|..+...+...|+++.|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344555666666666777666666654 22222 3567778888888899999999999999988888888888888
Q ss_pred HHHHcCC
Q 048812 501 IYAKAGR 507 (645)
Q Consensus 501 ~~~~~g~ 507 (645)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00076 Score=50.37 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=41.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888876654
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.25 Score=50.01 Aligned_cols=72 Identities=22% Similarity=0.185 Sum_probs=58.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 446 ANFITSMPIPP----DVSIWSSLLRA--CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 446 ~~~~~~m~~~p----d~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+.++++.++.| +...-|.|..| +..+|++.++.-.-.=+.++.| ++.+|..++-......++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34555666655 44566777777 6789999999988888889999 7799999999999999999999999765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0033 Score=56.86 Aligned_cols=93 Identities=13% Similarity=-0.039 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
...|..+...+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666677777788888888887776 22232 3478888899999999999999999999999998888888888
Q ss_pred HHH-------HcCCchHHHHHHHHH
Q 048812 501 IYA-------KAGRLDDMSRIRMKL 518 (645)
Q Consensus 501 ~~~-------~~g~~~~a~~~~~~m 518 (645)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 777877666655543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.11 Score=51.31 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC--h
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-----PDQV-TFIALLSACSHGGLVDEGYDFLSKKSRVY-NIKPK--M 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~ 426 (645)
..+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|++..|.+.|+...... ++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34567788899999999999999998764322 2222 33444446667889999999998876321 22222 3
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 048812 427 QHYGCMVDLLGR--AGHLEESANFITSMP 453 (645)
Q Consensus 427 ~~~~~li~~~~~--~g~~~~A~~~~~~m~ 453 (645)
.....|++++-. ...+++|..-|+.+.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 444556666543 345777777777763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0036 Score=49.51 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLL 436 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 436 (645)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...+++++|.+.++...+ ..| +...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcchhHHHHHHHHH
Confidence 4455556666666666666666665531 12234444555555555666666665555442 112 123334444444
Q ss_pred HHcCCHHHHHHHHH
Q 048812 437 GRAGHLEESANFIT 450 (645)
Q Consensus 437 ~~~g~~~~A~~~~~ 450 (645)
...|++++|...+.
T Consensus 79 ~~~~~~~~a~~~~~ 92 (100)
T cd00189 79 YKLGKYEEALEAYE 92 (100)
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0042 Score=56.56 Aligned_cols=101 Identities=19% Similarity=0.341 Sum_probs=82.1
Q ss_pred HHHHHHHHhhc--CcCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--------
Q 048812 340 IELAYDLFSEI--SEKNVYLWTSVIAAYAMA-----GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG-------- 404 (645)
Q Consensus 340 ~~~A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-------- 404 (645)
+.--...|+.. ..+|-.+|..++..|.+. |+.+=....+..|.+.|+.-|..+|+.||..+=+..
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33445566665 568889999999998864 677777888899999999999999999999876532
Q ss_pred --------cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 048812 405 --------LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 405 --------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 441 (645)
+-+-|++++++|. .+|+-||.+++..|++.+++.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 4567889999999 78999999999999999887765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.31 Score=53.43 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=85.7
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH--hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH
Q 048812 169 TSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR--TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246 (645)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 246 (645)
...+++..|+....++.+. -||. .|..+++++ .+.|..++|..+++.....+ ..|..+...+...|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 4567888888888887765 3443 355556654 47788888887777766555 3378888888899999999999
Q ss_pred HHHHHcccCCCCCChhhHHHHHHHHHhcCCHH----HHHHHHHhcccCCchhHHHHH
Q 048812 247 AQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD----EARRLFDEMVERNLISWTLMI 299 (645)
Q Consensus 247 A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~~~~t~~~ll 299 (645)
|..+|++.....|+......+..+|++.+.+. .|+++++...+ +...+-+++
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~ 151 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVI 151 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHH
Confidence 99999885555677666666777777776654 45555554433 233333444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.018 Score=56.85 Aligned_cols=133 Identities=9% Similarity=0.130 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA-CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
.+|-.++...-+.+..+.|..+|.+.++.+. .+...|...... +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 4688899999999999999999999986432 233334333333 344677888999999999764 456778889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 435 LLGRAGHLEESANFITSM-PIPPDV----SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.-=.+.|+++....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999986 323333 499999999999999999999999999988875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.045 Score=50.97 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=118.6
Q ss_pred CCCCcHHHHHHHHhhcCcCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 048812 335 ISIDNIELAYDLFSEISEKNVYLWTSV---IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYD 411 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 411 (645)
+..++.+.|...++.+.++-.-++..+ ..-+-..|++++|+++|+...+.. +.|.+++..=+...-..|..-+|++
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 444577888888877654222222211 123445899999999999999875 4567777766666666777778888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 048812 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCH---QNVKLAEHAFKHLTE 486 (645)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~ 486 (645)
-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -++| ++..+..+...+.-. .|.+.+.+.+.+.++
T Consensus 142 ~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 87777753 5678999999999999999999999999998 3445 556666776665444 378899999999999
Q ss_pred cCCCCchhHHHHHHHHHH
Q 048812 487 TDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 487 ~~p~~~~~y~~l~~~~~~ 504 (645)
+.|.+ ...+..+|..
T Consensus 220 l~~~~---~ral~GI~lc 234 (289)
T KOG3060|consen 220 LNPKN---LRALFGIYLC 234 (289)
T ss_pred hChHh---HHHHHHHHHH
Confidence 99955 3445555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0028 Score=60.29 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=71.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~ 475 (645)
-..+.+++++|+..|.+.++ +.|+ ..-|..=..+|.+.|.++.|.+=.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 36677889999998888884 6775 455555677888999888888766554 66664 458888888899999999
Q ss_pred HHHHHHHHHHhcCCCCch
Q 048812 476 LAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~ 493 (645)
+|++.|++.++++|++..
T Consensus 167 ~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHhhhccCCCcHH
Confidence 999999999999998853
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=48.53 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=49.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455678888999999888887 4446 566888899999999999999999999999999864
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=63.44 Aligned_cols=143 Identities=14% Similarity=0.018 Sum_probs=104.2
Q ss_pred cCcCChhHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc--------CcHHHHHHHHHH
Q 048812 350 ISEKNVYLWTSVIAAYAMAG-----HAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHG--------GLVDEGYDFLSK 415 (645)
Q Consensus 350 ~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~--------g~~~~a~~~~~~ 415 (645)
....|...|...+.+..... ..++|..+|++..+ ..|| ...+..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 33467899999998866533 26799999999998 4677 44555544433221 123344444444
Q ss_pred hHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 416 KSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 416 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.........+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3321112334577888877777889999999999987 677898899999999999999999999999999999998753
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0085 Score=61.34 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=83.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHc
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRA 439 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 439 (645)
-...+...|++++|+++|++.++.. +-+...|..+..++...|++++|...++.+.+ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999853 23467788888899999999999999999885 566 477888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 048812 440 GHLEESANFITSM-PIPPDVSIWSSLLRAC 468 (645)
Q Consensus 440 g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~ 468 (645)
|++++|...|++. .+.|+......++..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999886 5666655544444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=51.17 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHH
Q 048812 368 AGHAQKAIDLFLEMEETGT-KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 445 (645)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4667777777777766432 12344444466677777777777777765 2 12222 23333445666666666666
Q ss_pred HHHHHh
Q 048812 446 ANFITS 451 (645)
Q Consensus 446 ~~~~~~ 451 (645)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0056 Score=58.31 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=81.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCC
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGH 441 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 441 (645)
.-+.+.+++++|+..|.+.++. .+-|.+-|..=..+|++.|.++.|++=.+.... +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 3466789999999999999985 233567777788899999999999988877763 6776 6899999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHH
Q 048812 442 LEESANFITSM-PIPPDVSIWSSLL 465 (645)
Q Consensus 442 ~~~A~~~~~~m-~~~pd~~~~~~ll 465 (645)
+++|.+.|++. .+.|+-.+|-.=|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999886 7888877765533
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.037 Score=49.95 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGC 431 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 431 (645)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|.+.++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45677888888889999999999998876532322 34777888888889999999998888774 3443 444555
Q ss_pred HHHHHH
Q 048812 432 MVDLLG 437 (645)
Q Consensus 432 li~~~~ 437 (645)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0091 Score=48.19 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLISARTKLR--------DLEMGKNLHLFLEESTMKISGSLL 231 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 231 (645)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999887653 234566789999999999999999
Q ss_pred HHHHHHHHH
Q 048812 232 NYLVDMYFK 240 (645)
Q Consensus 232 ~~li~~y~~ 240 (645)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0095 Score=58.87 Aligned_cols=128 Identities=11% Similarity=-0.028 Sum_probs=84.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKK---SRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-------PI-PPDVS 459 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~pd~~ 459 (645)
.|..|-+.|.-.|+++.|+..++.- .+++|-.. ....++.|...+.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666677788877665532 22344332 2456677777777788888887776643 21 12345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETD------PLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+.-+|.++|....+++.|+.++.+-+.+. .....++.+|.++|...|.-+.|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66678888888888888888887765522 1234577888888888888888887766554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0068 Score=52.94 Aligned_cols=90 Identities=8% Similarity=-0.002 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
....-+...|++++|..+|+-+ -. .-+..-|..|..+|...++++.|...|.....++++||.++...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444456789999999999876 12 235667888998999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 048812 509 DDMSRIRMKLRD 520 (645)
Q Consensus 509 ~~a~~~~~~m~~ 520 (645)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0022 Score=48.59 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=47.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
..+.+.++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457778888888888888888888888888888888888888888888888876543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0016 Score=48.64 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 439 AGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 439 ~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
.|++++|.++++++ ...| +...+..+..+|...|++++|..+++++...+|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444443 1112 34444445555555555555555555555555544
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.021 Score=46.16 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPDQVTFIALLSACSHGG--------LVDEGYDFLSKKSRVYNIKPKMQ 427 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 427 (645)
|-...|.-+...|++.....+|+.+++.|+ .|+..+|+.+|.+..+.. .+-+...+++.|. ..+++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 344566677777999999999999999999 999999999999877543 3445667788887 567888888
Q ss_pred HHHHHHHHHHH
Q 048812 428 HYGCMVDLLGR 438 (645)
Q Consensus 428 ~~~~li~~~~~ 438 (645)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=60.53 Aligned_cols=121 Identities=16% Similarity=0.027 Sum_probs=75.2
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHH
Q 048812 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN-IKPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDVSI 460 (645)
Q Consensus 385 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~pd~~~ 460 (645)
+.+.+......+++.+....+++++..++.+.+.... ...-..+..++|..|...|..+++.++++.= |+=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445666666777777777777777777666653211 1111233347777777777777777777653 56677777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHc
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTET-DPLNDGAHVLLANIYAKA 505 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~-~p~~~~~y~~l~~~~~~~ 505 (645)
++.|+..+.+.|++..|.+++..|... ..+++.++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777666553 345555655544444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.035 Score=48.34 Aligned_cols=102 Identities=7% Similarity=-0.081 Sum_probs=72.3
Q ss_pred HHccCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 048812 149 LFDKLP-NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVSLISARTKLRDLEMGKNLHLFLEESTMKI 226 (645)
Q Consensus 149 ~f~~m~-~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 226 (645)
.+..|. +.+....-.+..-+.+.|++++|..+|+.+..- .|.. .-|-.|-.+|-..|++++|...|..+.... +.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~d 101 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-ID 101 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 333444 344444555666677888888888888887765 3443 345556666667788888888888888777 46
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
|+..+-.+..+|.+.|+.+.|++.|+.
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677777778888888888888888876
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00093 Score=41.81 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.24 Score=43.97 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CCCCHH
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P-----IPPDVS 459 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~pd~~ 459 (645)
.-|+...-..|..+....|+..+|...|++.. ..-+.-|....-.+.++....+++.+|...++++ . -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 45666666677777778888888888887776 2233445666667777777778888888777776 2 2344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+-..+.+.+...|....|+..|+.+++..|.. ..-.....++++.|+.+++..-+..+.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33456677888999999999999999988753 555566778889998888776554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.058 Score=53.73 Aligned_cols=154 Identities=10% Similarity=0.028 Sum_probs=103.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCChHH------------
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS--ACSHGGLVDEGYDFLSKKSRVYNIKPKMQH------------ 428 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------ 428 (645)
..+...|++++|...--...+.. ++ ..+..++. ++...++.+.|...|++..+ +.|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 34556677777776655544431 11 11222222 33445677777777776652 4454211
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 429 -YGCMVDLLGRAGHLEESANFITSM-PI-----PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 429 -~~~li~~~~~~g~~~~A~~~~~~m-~~-----~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
+..=.+...+.|++.+|.+.+.+. .+ +|+...|.....+..+.|+.++|+.--+++++++|.-...|..-.++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 111123456889999999998876 44 44566677777778889999999999999999999888888888999
Q ss_pred HHHcCCchHHHHHHHHHHhCC
Q 048812 502 YAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 502 ~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+...++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999888775543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.029 Score=55.33 Aligned_cols=139 Identities=10% Similarity=0.056 Sum_probs=103.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA-RTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDM 237 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 237 (645)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 478899999999999999999999998653 2233444433333 33357788899999999987 57788899999999
Q ss_pred HHHcCCHHHHHHHHcccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhcc--cCCchhHHHHH
Q 048812 238 YFKCGKIGEAQKLLGRYEIDEVD----VVLWTTLVSGYVKSNERDEARRLFDEMV--ERNLISWTLMI 299 (645)
Q Consensus 238 y~~~g~~~~A~~~~~~m~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~t~~~ll 299 (645)
+.+.|+.+.|+.+|++....-+. ...|...+.-=.+.|+.+.+.++.+++. -++..+...++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999999985444333 3489999999999999999999998887 33433444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.044 Score=48.43 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=95.5
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 413 LSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 413 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+++..++..+.|++.+--.|...+.+.|+..||...|++. .+.-|......+.++....++.-.|...++.+.+-.|
T Consensus 76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 3445556668899999999999999999999999999987 4566888999999999999999999999999999877
Q ss_pred C--CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 490 L--NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 490 ~--~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
. .+.....+...|...|++++|+..++...+.-
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 4 56677889999999999999999999886643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=55.77 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=86.9
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCchhHH
Q 048812 423 KP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCH---QNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 423 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.| |...|-.|...|.+.|+++.|..-|.+. .+. +++..+..+..++... ....++..++++++.++|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 6899999999999999999999999886 333 4566777777775443 3568899999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
.|...+...|++.+|...++.|.+..-.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999886643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.028 Score=47.03 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLG 437 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 437 (645)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..++++....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677889999999999999999887655 45677788899999999999999999886543211 1122222344677
Q ss_pred HcCCHHHHHHHHHh
Q 048812 438 RAGHLEESANFITS 451 (645)
Q Consensus 438 ~~g~~~~A~~~~~~ 451 (645)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999888877654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.092 Score=51.96 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG-GLVDEGYDFLSKKSRVYNIKPK----MQHYGCM 432 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 432 (645)
|...+..|...|++..|-..+.++ ...|... |++++|.++|++..+-+.-... ..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 444455556666666555554443 3456666 7888888888877754332222 4556777
Q ss_pred HHHHHHcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 433 VDLLGRAGHLEESANFITSMP---I-----PPDVS-IWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m~---~-----~pd~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
...+.+.|++++|.++|++.. . +.+.. .+-..+-.+...||...|.+.+++..+.+|.-
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 888999999999999998762 1 11121 12222224556789999999999999888753
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.76 Score=45.75 Aligned_cols=297 Identities=17% Similarity=0.142 Sum_probs=175.7
Q ss_pred chHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCchhH--HH
Q 048812 159 ISWNTMISCYTS--MGMYREGLGLLSKMGAEGVSPDEVTMVSLISART--KLRDLEMGKNLHLFLEESTMKISGSL--LN 232 (645)
Q Consensus 159 ~~~n~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~ 232 (645)
.-|.+|-.|+.- .|+-..|.++-.+-.+. +.-|...+.-|+.+-. -.|+.+.|++-|+.|... |.... ..
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 345566555544 45666666666554322 3345555555665443 458888888888888742 22211 11
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhh
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKY 311 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~ 311 (645)
.|.----+.|..+.|...-+..-...| =.-.|.+.+...+..|+++.|+++++.-+...++
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi------------------ 220 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI------------------ 220 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh------------------
Confidence 222223466788877777665212223 2346778888999999999999998765422111
Q ss_pred hhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChh--HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC
Q 048812 312 KSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVY--LWTSVIAAYAM---AGHAQKAIDLFLEMEETGT 386 (645)
Q Consensus 312 ~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~ 386 (645)
++++. .-..|+.+-+. .-+...|...-.+..+ +
T Consensus 221 ----------------------------------------e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L 258 (531)
T COG3898 221 ----------------------------------------EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--L 258 (531)
T ss_pred ----------------------------------------chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--c
Confidence 01110 01111111111 1233344443333332 5
Q ss_pred CCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH--HHHH--HHHhCCCCC-CHHH
Q 048812 387 KPDQV-TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE--ESAN--FITSMPIPP-DVSI 460 (645)
Q Consensus 387 ~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~--~~~~m~~~p-d~~~ 460 (645)
.||-+ .-..-..++.+.|++.+|-.+++.+-+ ..|.+..+...+ +.|.|+-. .... -++. ++| +..+
T Consensus 259 ~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~s--lk~nnaes 331 (531)
T COG3898 259 APDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLES--LKPNNAES 331 (531)
T ss_pred CCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHh--cCccchHH
Confidence 67743 333444678888999999999988874 466665543333 34555422 1111 1233 345 4567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHhCCCcccCce
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA-GRLDDMSRIRMKLRDMGLKKQLGY 529 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~ 529 (645)
.-++..+-...|++..|..-.+.+....|.. ..|..|.++-... |+-.++...+-+..+. +.+|.+
T Consensus 332 ~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 332 SLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 7778888889999999999999999999965 7888999987654 9988888887666442 344543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.18 Score=48.41 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HH---HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ-VT---FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+-.....+...|++++|++.|++.... -|+. .+ ...+..++.+.+++++|...+++..+.++-.|++. |...+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHH
Confidence 334455566788888888888888774 3332 22 24556677888888888888888887666666542 11112
Q ss_pred HHHH--Hc---------------CC---HHHHHHHHHhC----CCC---CCHHHH-----H-------HHHHHHHhcCCh
Q 048812 434 DLLG--RA---------------GH---LEESANFITSM----PIP---PDVSIW-----S-------SLLRACRCHQNV 474 (645)
Q Consensus 434 ~~~~--~~---------------g~---~~~A~~~~~~m----~~~---pd~~~~-----~-------~ll~a~~~~g~~ 474 (645)
.+++ .. .+ ..+|.+.|+++ |-. |+.... + .+..-|.+.|.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 2211 01 11 23444444443 211 111111 1 223337788999
Q ss_pred HHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 475 KLAEHAFKHLTETDPLND---GAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
..|..-++.+++.-|+.+ .+...+.++|...|..++|..+...+.
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 999999999999887654 456688899999999999999887653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.06 Score=55.48 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET--GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (645)
-+.+....++.......+.+++..++.+.+.. ....-..|..+++..|...|..+.+..+++.=. .||+-||..+++
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n 142 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFN 142 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHH
Confidence 34555666777777777888899988888765 222234567799999999999999999998877 799999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 048812 431 CMVDLLGRAGHLEESANFITSM---PIPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~ 471 (645)
.|++.+.+.|++..|.++...| ..-.+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999887 2234455665555566554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.02 Score=52.25 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHccC--CCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcC----------
Q 048812 144 KEVCQLFDKL--PNRDVISWNTMISCYTSM-----GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL---------- 206 (645)
Q Consensus 144 ~~A~~~f~~m--~~~~~~~~n~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---------- 206 (645)
..-...|++. ..+|-.+|..+|..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 31 ~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 31 APHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 3345566665 458888999999988764 67777778889999999999999999999886542
Q ss_pred ------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCC
Q 048812 207 ------RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK 243 (645)
Q Consensus 207 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 243 (645)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788899999999999999999999998877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0074 Score=45.09 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQ-NVKLAEHAFKHLTETDP 489 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p 489 (645)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666667777777777777777665 3344 4567888888888888 68889999988888877
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.26 Score=46.18 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=127.6
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHhhcC----------chh-hccCC-hHHHHHH-HccCCCCCcchHHHHHHHHHhcC
Q 048812 106 IWNSIIENQLINGYPQEVFAIYLYLVTRT----------VLL-NKCGK-LKEVCQL-FDKLPNRDVISWNTMISCYTSMG 172 (645)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~~-~~~g~-~~~A~~~-f~~m~~~~~~~~n~li~~~~~~g 172 (645)
.|+.-+..+++....++|..-+......+ ..| .+.|. +.-+.++ ..++++.....|++|++.+.-..
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~ 150 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 35555555555555555554444443332 111 12232 2233332 23344444556777777665544
Q ss_pred ChHHHHHHHHHHhhCCCCCC----------hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC
Q 048812 173 MYREGLGLLSKMGAEGVSPD----------EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 242 (645)
-.++-+..++. +..|. ......++..+...+.+.-....+..+++...+.++.....|+++-.+.|
T Consensus 151 ~V~~ii~~~e~----~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 151 VVSKILANLEQ----GLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHHHHHh----ccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 33333333322 11111 22345566667777888888888888888877888889999999999999
Q ss_pred CHHHHHHHHcccCCC--CCChhhHHHHH-----HHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 243 KIGEAQKLLGRYEID--EVDVVLWTTLV-----SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 243 ~~~~A~~~~~~m~~~--~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
+.+.|...|++.+.. .-|..+.+.++ ..|.-.+++.+|...|.+....|
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D------------------------ 282 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD------------------------ 282 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC------------------------
Confidence 999999999863221 11333333322 23444455555655555555433
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 395 (645)
..|++.-|.-.-+..-.|+..+|++..+.|.+. .|...+-.+
T Consensus 283 ------------------------------------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 283 ------------------------------------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred ------------------------------------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 234555554444455578899999999999874 455444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0055 Score=41.05 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999888877654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.023 Score=55.05 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHH
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND---GAHVLLA 499 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~y~~l~ 499 (645)
.|..-+..+.+.|++++|...|+.+ ...|+ ...+--+..++...|+++.|...|+.+++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444455566555555554 12222 12344455556666666666666666666555432 3344445
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 048812 500 NIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~ 520 (645)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666666544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.014 Score=59.59 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDV----SIWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555555555555555555552 444442 23555555555555555555555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.044 Score=45.88 Aligned_cols=83 Identities=17% Similarity=0.081 Sum_probs=47.6
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHcC
Q 048812 435 LLGRAGHLEESANFITSM---PIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL---NDGAHVLLANIYAKAG 506 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m---~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~y~~l~~~~~~~g 506 (645)
++-..|+.++|..++++. +...+ ...+-.+.+++...|++++|..++++.....|+ +......+.-++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344455555555555543 21111 224445566677777777777777777766665 4445555556666777
Q ss_pred CchHHHHHHHH
Q 048812 507 RLDDMSRIRMK 517 (645)
Q Consensus 507 ~~~~a~~~~~~ 517 (645)
+.++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 77777666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.2 Score=45.68 Aligned_cols=181 Identities=15% Similarity=0.192 Sum_probs=100.3
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-------------------chhhccCChHHHHHH
Q 048812 89 LGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-------------------VLLNKCGKLKEVCQL 149 (645)
Q Consensus 89 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------~~~~~~g~~~~A~~~ 149 (645)
+++|.+..+. .|....|..+.....+.-.++-|...|-+...-. ..-+-.|++++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4444444443 4556679888887777666666666664432200 222234677777777
Q ss_pred HccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 048812 150 FDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD----EVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225 (645)
Q Consensus 150 f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 225 (645)
+-.|..+|.. |..+.+-|++-...++++. -|-..| ...|..+...++....++.|.+.+..--.
T Consensus 757 yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---- 824 (1189)
T KOG2041|consen 757 YLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---- 824 (1189)
T ss_pred hhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 7766666642 4455566666555555432 111111 23455555555555556666555543211
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 048812 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291 (645)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 291 (645)
...++.+|.+..++++-+.+-.. .+ .|....-.|...+...|.-++|.+.|-+-..|.
T Consensus 825 -----~e~~~ecly~le~f~~LE~la~~--Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk 882 (1189)
T KOG2041|consen 825 -----TENQIECLYRLELFGELEVLART--LP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK 882 (1189)
T ss_pred -----hHhHHHHHHHHHhhhhHHHHHHh--cC-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH
Confidence 11245555555555555555444 22 244455667888888888888888876655443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.15 Score=42.43 Aligned_cols=139 Identities=13% Similarity=0.204 Sum_probs=87.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 446 (645)
-.|..++..++..+.... .+..-++.+|--...+-+-+-..+.++.+-+-+.+.| +|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHHH
Confidence 357777888888777764 3566677777666666666666677776665444433 33333333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 447 ~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
..+-.++ .+......-+++...+|.-+.-.+++..+...+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 233445566778888999999999999988766567788889999999999999999999999998874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.31 Score=51.32 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-------
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP-IPPDVSI------- 460 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~------- 460 (645)
+..+...+..-+-+...+..|-++|.+|-. ...++++....+++++|..+-++.| +.||+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 345555555556666777788888887763 2467888889999999999999885 4455431
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 461 ----WSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 461 ----~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
+.---.||.+.|+..+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12233567888888889888888865
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.025 Score=42.74 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=51.0
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
..|.+.+++++|.++++.+ ...| ++..|......+...|+++.|.+.++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677888888888888887 4444 5667888888899999999999999999999998765443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.9 Score=43.14 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=35.6
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 235 VDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 235 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
|.-+...|+...|.++-.+. .-||-.-|-..|.+++..++|++-.++-.. +..++.|..++.
T Consensus 184 i~~li~~~~~k~A~kl~k~F--kv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~ 245 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEF--KVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVE 245 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHH
Confidence 44455566667777776663 335666677777777777777665554332 233444444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.99 Score=45.71 Aligned_cols=127 Identities=22% Similarity=0.162 Sum_probs=81.4
Q ss_pred HHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---------cCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 362 IAAYAM---AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH---------GGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 362 i~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
.-++-+ .|+.++|++++..+......++..||..+...|-. ....++|...|.+.- .+.|+..+-
T Consensus 186 afALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~G 262 (374)
T PF13281_consen 186 AFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSG 262 (374)
T ss_pred HHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccch
Confidence 334445 78888888888886666667777777766665532 234677777776544 456664443
Q ss_pred HHHHHHHHHcCCHH----HHHHHH---HhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 430 GCMVDLLGRAGHLE----ESANFI---TSM-------PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 430 ~~li~~~~~~g~~~----~A~~~~---~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
-.++.++...|.-. +..++- ..+ .-..|-..+.+++.++.-.||.+.|.++++++..+.|+.
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33344444444322 222222 111 123456677899999999999999999999999998765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.088 Score=44.54 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
..++.++|.++++.|+.+....+.+..- |+.++... ..+. ......+.|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 4456677777777777776666665432 22211000 0000 1112344555666666666
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 048812 435 LLGRAGHLEESANFITSM----PIPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m----~~~pd~~~~~~ll~a~~~~ 471 (645)
+|+..|++..|.++++.. +++-+..+|..|+.-+...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 666666666666555443 4444556666666654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.099 Score=52.28 Aligned_cols=85 Identities=15% Similarity=0.074 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCE
Q 048812 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGF 537 (645)
Q Consensus 458 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~ 537 (645)
..++..|.-+|.+.+.+..|++.-.++++++|+|..+.+.-..+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 456777888889999999999999999999999999999999999999999999999999976
Q ss_pred EEEEEeCCCCCcChHHHHHHHHHHHHHHHHc
Q 048812 538 VHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568 (645)
Q Consensus 538 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~ 568 (645)
..|..++|...|..+..++++.
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.18 Score=53.08 Aligned_cols=191 Identities=12% Similarity=0.184 Sum_probs=99.2
Q ss_pred HHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCC--cccHHH-----HHHHHHHcCChhHHHHHHHHHhhcC--
Q 048812 64 LITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE--IKIWNS-----IIENQLINGYPQEVFAIYLYLVTRT-- 134 (645)
Q Consensus 64 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~--~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~-- 134 (645)
+.+.|-.|+..+ +...++-.|++.+|.++|.+--..| ...|+- ...-|...|..++-..+.++-.++.
T Consensus 626 ~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 626 RKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 444554454432 2344556666777777776543222 222322 1233444555555444444322211
Q ss_pred --------chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcC
Q 048812 135 --------VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206 (645)
Q Consensus 135 --------~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (645)
.|+...|+.++|..+ ...+|-.+-++++=+++-.. +..+...+...+.+.
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l 760 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKL 760 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhc
Confidence 344445555555433 34445555555555544322 344555555555556
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChh-----------hHHHHHHHHHhcC
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVV-----------LWTTLVSGYVKSN 275 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~-----------~~~~li~~~~~~g 275 (645)
..+..|-++|..|-.. .+++++....+++++|..+-++...-.+|+. -+.---.+|.+.|
T Consensus 761 ~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 761 DSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 6666677776655322 2466677777777777777776222223332 1222334667788
Q ss_pred CHHHHHHHHHhcc
Q 048812 276 ERDEARRLFDEMV 288 (645)
Q Consensus 276 ~~~~A~~~~~~m~ 288 (645)
+..||.++++++.
T Consensus 832 r~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 832 RQREAVQVLEQLT 844 (1081)
T ss_pred chHHHHHHHHHhh
Confidence 8888888888775
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.19 Score=48.78 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=55.6
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCh
Q 048812 401 SHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM----PIPP-DVSIWSSLLRACRCHQNV 474 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~ 474 (645)
...|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ |..| ....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445566666666665543321110 234455566666666666666666655 2111 233444556667788899
Q ss_pred HHHHHHHHHHHhcCCCCch
Q 048812 475 KLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~~ 493 (645)
+.|...++++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 9999999999998887643
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.075 Score=44.97 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC 468 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~ 468 (645)
|..++.+++.++++.|+++....+.+. .+|+.++...- .+. +-..-+..|+..+..+++.++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~---~WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS---VWGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH---hcCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 567788888888888888888777753 45676553110 000 222236789999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHc
Q 048812 469 RCHQNVKLAEHAFKHLTETDP--LNDGAHVLLANIYAKA 505 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p--~~~~~y~~l~~~~~~~ 505 (645)
...|++..|.++.+...+..| -+...+..|.+-....
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998553 3456777666654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.035 Score=48.75 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+...++..+...|+++.|....++++..+|.+...|..++.+|...|+..+|.++++++++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777788899999999999999999999999999999999999999999999988743
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.077 Score=50.08 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcC--cCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--------
Q 048812 340 IELAYDLFSEIS--EKNVYLWTSVIAAYAMA-----GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG-------- 404 (645)
Q Consensus 340 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-------- 404 (645)
+-..++.|.... ++|-.+|-+++..+..+ ++.+=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334456677776 58889999999888764 556666677899999999999999999999876543
Q ss_pred --------cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 048812 405 --------LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 405 --------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 443 (645)
+-+-++.++++|. .+|+.||-++-..|++++++.|..-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2345889999999 7999999999999999999988643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.45 Score=44.67 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----CCCChHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYN----IKPKMQHYGC 431 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~ 431 (645)
..-++++..+.-+|.+.-.+.++.+.++...+-+..-...+.+.-.+.|+.+.|..+|+...+..+ +.-..-+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777777888888889999998876566777777888888889999999999997664433 2222333333
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 432 MVDLLGRAGHLEESANFITSMPI-PP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~~-~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+...|.-++++.+|...+.+.+. .| |+..-|.-.-...-.|+...|.+..+.+++..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 44456667788888888877742 22 344444333334446888889999998888888653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.8 Score=41.55 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=35.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEET--GTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 416 (645)
+..-|.+.|.+..|+.-|+.+.+. +.+........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 445577777777777777777753 22223445556667777777777776665443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.17 Score=53.10 Aligned_cols=130 Identities=19% Similarity=0.142 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048812 107 WNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186 (645)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 186 (645)
.+.+++-+-+.|.++.|+++-..-...=.+..++|+++.|.++-++.. +...|..|.....++|+++-|.+.|.+...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 455555555556666665554443222245568999999999988876 666999999999999999999999988753
Q ss_pred CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 187 EGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
|..|+-.+...|+.+.-.++.......| . +|....++.-.|++++..+++.+
T Consensus 376 ---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 ---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666666777888888878777777665 2 45555666677888888888876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.11 Score=49.90 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=80.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHH---HHhcCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLIS---ARTKLRDLEMGKNLHLFLEESTMKISGSLLNY 233 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 233 (645)
|...|--|...|.+.|+++.|+.-|.+..+.- .+|...+..+.. .-+...+-.++.+++.++++.. +.|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 77889999999999999999999998887652 223333333333 3334445677888888888775 556666667
Q ss_pred HHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHH
Q 048812 234 LVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSG 270 (645)
Q Consensus 234 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~ 270 (645)
|...+...|++.+|...|+.|....|....|..+|..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 7778888888888888888876666666666666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.97 Score=42.15 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTK-P-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 437 (645)
.....+...|++++|+..|+++...-.. | -......+..++.+.|+++.|...++...+.++-.|... +...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHH
Confidence 4455667789999999999998865221 1 134556677788888999999999988887766555431 222222221
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-----------------hHHHHHH
Q 048812 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG-----------------AHVLLAN 500 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~y~~l~~ 500 (645)
......... . .....+....|...|+.+++..|+++- .-..++.
T Consensus 89 ~~~~~~~~~------~-------------~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL------R-------------SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch------h-------------cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110 1 112223455666677777777776542 2235677
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 048812 501 IYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 501 ~~~~~g~~~~a~~~~~~m~~ 520 (645)
.|.+.|++..|..-++.+.+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH
Confidence 89999999999999988866
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.48 E-value=4.8 Score=43.77 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=86.5
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 048812 385 GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSL 464 (645)
Q Consensus 385 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~l 464 (645)
|..-...|.+--+.-+...|+..+|.++-.+.+ .||-..|--=+.+++..+++++-+++-+++. .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334444556666667777888888887765544 5788888888888999999999888888774 24566778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
..+|.+.|+.++|.+++-+.-.+ .-...+|.+.|.+.+|.++--+-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 88899999999998887654222 15678888999988888775443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.026 Score=43.29 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
+..++.+|...|++++|.+.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444443
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.028 Score=43.12 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-------P-IPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
..+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|++.+++.+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467899999999999999999998875 2 1233 557888999999999999999999998874
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.2 Score=44.63 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=120.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHH----hCC-CCchhHHHHHHH
Q 048812 166 SCYTSMGMYREGLGLLSKMGAEGVSPDEV----TMVSLISARTKLRDLEMGKNLHLFLEE----STM-KISGSLLNYLVD 236 (645)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~ 236 (645)
.-+++.|+....+.+|+..++.|-. |.. .|..|-++|.-.+|+++|.+.|..=+- .|- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478899999999999999988743 433 466677788888899999988754221 110 011122223444
Q ss_pred HHHHcCCHHHHHHHHcc-cCCC----C--CChhhHHHHHHHHHhcCCH-------------HHHHHHHHhcccCCchhHH
Q 048812 237 MYFKCGKIGEAQKLLGR-YEID----E--VDVVLWTTLVSGYVKSNER-------------DEARRLFDEMVERNLISWT 296 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~-m~~~----~--~~~~~~~~li~~~~~~g~~-------------~~A~~~~~~m~~~~~~t~~ 296 (645)
.+--.|.+++|.-.-.+ +... . .....+-.+...|...|+. +++.+.|+...+ -|.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~----fy~ 179 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK----FYM 179 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH----HHH
Confidence 44445666665543222 1000 0 1223444556666555431 222222222210 000
Q ss_pred HHHHhhhccCCchhh-hhhcc-------ccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 297 LMISGMLNQDAEFKY-KSCAS-------IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 297 ~ll~~~~~~~~~~~~-~a~~~-------~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
.-+...-+.||..+- .+|.+ +|+++.+...|.. +++-|.+.=++..+ -..+..+..++.-.
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~---------RL~ia~efGDrAae--RRA~sNlgN~hifl 248 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKL---------RLEIAQEFGDRAAE--RRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHH---------HHHHHHHhhhHHHH--HHhhcccchhhhhh
Confidence 000001111122222 34444 3455555555443 22333333222221 23566777888888
Q ss_pred CCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 048812 369 GHAQKAIDLFLEMEE----TGTK-PDQVTFIALLSACSHGGLVDEGYDFLSK 415 (645)
Q Consensus 369 g~~~~A~~l~~~m~~----~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 415 (645)
|+++.|.+.|+.-.. .|-+ ....+..+|.++|.-...+++|+.++..
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999888877542 2322 2244555667777777777777777754
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.1 Score=45.73 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=67.7
Q ss_pred HHcCChhHHHHHHHHHhhc--Cchhhcc---CChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 115 LINGYPQEVFAIYLYLVTR--TVLLNKC---GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~--~~~~~~~---g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
...++...+++.++++... +..+... .-+...+..+.+. -......++..+...|++++|+.+.+.+....
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d- 92 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLREL---YLDALERLAEALLEAGDYEEALRLLQRALALD- 92 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 4556777777777766652 1222211 1122222222221 22456667777888899999999999888763
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHH-----hCCCCchhHHH
Q 048812 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEE-----STMKISGSLLN 232 (645)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~ 232 (645)
+-|...|..+|.++...|+...|.+.|..+.+ .|++|+..+-.
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34677888999999999999999988887743 47777766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.1 Score=39.94 Aligned_cols=143 Identities=13% Similarity=0.201 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEE--TGTKPDQV--TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
..|+--..+|..+|.++.|-..+++.-+ +++.||.. .|.--+...-..++...| ...|..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk 155 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGK 155 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHH
Confidence 3466677888888888887777766432 23666632 222222222222222222 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCchhHHHHH
Q 048812 432 MVDLLGRAGHLEESANFITSMP-------IPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTE----TDPLNDGAHVLLA 499 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~-------~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p~~~~~y~~l~ 499 (645)
.-..|.+..++++|-..|.+-. ..|+. ..+-+.|-.+....|+..|++.++.-.+ .+|++..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 5667888888888877766542 12332 2344455556666789999999998766 3466777777888
Q ss_pred HHHHHcCCchHHHHHH
Q 048812 500 NIYAKAGRLDDMSRIR 515 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~ 515 (645)
.+| ..|+.+++.++.
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 877 457777776655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.87 E-value=2.7 Score=39.18 Aligned_cols=137 Identities=15% Similarity=0.084 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc-------------cCcHHHHHHHHHHhHHhcCCC
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSH-------------GGLVDEGYDFLSKKSRVYNIK 423 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~-------------~g~~~~a~~~~~~~~~~~~~~ 423 (645)
.-.++.++-+.|++++|...|++.++.- -.|. ..+...+.+.+. .+...+|...|+.+.+.
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~---- 119 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR---- 119 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----
Confidence 3456778888999999999999987642 1222 222222222221 12233445555554443
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch---hHHHHHH
Q 048812 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG---AHVLLAN 500 (645)
Q Consensus 424 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~y~~l~~ 500 (645)
|=......+|...+..+...--..- -.+..-|.+.|.+..|..-++.+++..|+.+. +...|+.
T Consensus 120 ------------yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~ 186 (203)
T PF13525_consen 120 ------------YPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE 186 (203)
T ss_dssp -------------TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred ------------CcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 3334444455444443310000000 12445588899999999999999999987654 4457888
Q ss_pred HHHHcCCchHHH
Q 048812 501 IYAKAGRLDDMS 512 (645)
Q Consensus 501 ~~~~~g~~~~a~ 512 (645)
.|.+.|..+.+.
T Consensus 187 ~y~~l~~~~~a~ 198 (203)
T PF13525_consen 187 AYYKLGLKQAAD 198 (203)
T ss_dssp HHHHTT-HHHHH
T ss_pred HHHHhCChHHHH
Confidence 899999877443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.65 E-value=5.7 Score=40.19 Aligned_cols=255 Identities=11% Similarity=0.004 Sum_probs=133.8
Q ss_pred hcCChHHHHHHHhhC---CCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcC-----------chhhccCChHHHHHHH
Q 048812 85 FTGDLGYAQQIIRQG---DEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRT-----------VLLNKCGKLKEVCQLF 150 (645)
Q Consensus 85 ~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~g~~~~A~~~f 150 (645)
+..++..|+..+... -+.++.-|..-...+..-|++++|+--.++-.+.+ ..+...++..+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 334445555554432 23345556666667777777777666665555433 1122223333444443
Q ss_pred ccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhhHHHHHH-HHhcCCChHHHHHHHHHHHHhCCCCch
Q 048812 151 DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV-SPDEVTMVSLIS-ARTKLRDLEMGKNLHLFLEESTMKISG 228 (645)
Q Consensus 151 ~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~ 228 (645)
+ |...| ....|+..++....... +|...++-.+-. ++...++.+.|.++-..+++.. ..+
T Consensus 141 ~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n- 202 (486)
T KOG0550|consen 141 K-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN- 202 (486)
T ss_pred h-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch-
Confidence 3 11111 12233333433333322 244445544332 3456788888888777777654 222
Q ss_pred hHHHHHH--HHHHHcCCHHHHHHHHcccCCCCCChh-------------hHHHHHHHHHhcCCHHHHHHHHHhcccCCch
Q 048812 229 SLLNYLV--DMYFKCGKIGEAQKLLGRYEIDEVDVV-------------LWTTLVSGYVKSNERDEARRLFDEMVERNLI 293 (645)
Q Consensus 229 ~~~~~li--~~y~~~g~~~~A~~~~~~m~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 293 (645)
.+..++ .++--.++.+.|..-|++-....|+-. .|..=..-..++|++.+|.+.|.+....|+.
T Consensus 203 -~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 203 -AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred -hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 222222 233345678888888887443444321 2333333456677777777777776633321
Q ss_pred hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHH
Q 048812 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK 373 (645)
Q Consensus 294 t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 373 (645)
. ..++...|-.......+.|+.++
T Consensus 282 n--------------------------------------------------------~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 282 N--------------------------------------------------------KKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred c--------------------------------------------------------cchhHHHHHHhHhhhcccCCchh
Confidence 1 03455556666667777888888
Q ss_pred HHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 374 AIDLFLEMEETGTKPDQVT---FIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 374 A~~l~~~m~~~g~~pd~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
|+.--++... .|..- |..-..++...+.+++|.+.|++..+
T Consensus 306 aisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 306 AISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877666554 23322 22222344556778888888777764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.27 Score=50.43 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM----QHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
+...++.+..+|...|++++|...|++..+ +.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467788888888889999999999888774 57763 34788888899999999998888875
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.49 Score=39.41 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=65.9
Q ss_pred HHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCC---chhHHHHHHHHHHcCCc
Q 048812 435 LLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLN---DGAHVLLANIYAKAGRL 508 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~---~~~y~~l~~~~~~~g~~ 508 (645)
+++..|+++.|++.|.+. .+ +.....||.=..+++-+|+.++|+.-+++++++. |.. -..|+.-..+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888887765 22 2356778888888888888888888888888854 332 13577777788888888
Q ss_pred hHHHHHHHHHHhCC
Q 048812 509 DDMSRIRMKLRDMG 522 (645)
Q Consensus 509 ~~a~~~~~~m~~~~ 522 (645)
+.|..=|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888877766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.37 Score=45.90 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=41.3
Q ss_pred HcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHcCC
Q 048812 438 RAGHLEESANFITSM-------PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL---NDGAHVLLANIYAKAGR 507 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~y~~l~~~~~~~g~ 507 (645)
+.|++.+|...|... ...|+..-| |..++...|+++.|..+|..+.+-.|+ -|..+.-|..+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555444443 123444444 445555555666666665555554333 23445555555555666
Q ss_pred chHHHHHHHHHHh
Q 048812 508 LDDMSRIRMKLRD 520 (645)
Q Consensus 508 ~~~a~~~~~~m~~ 520 (645)
.++|..++++..+
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.37 Score=45.65 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=80.7
Q ss_pred hHHHHHHHccCC--CCCcchHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCC--------
Q 048812 143 LKEVCQLFDKLP--NRDVISWNTMISCYTSM-----GMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR-------- 207 (645)
Q Consensus 143 ~~~A~~~f~~m~--~~~~~~~n~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-------- 207 (645)
+-..++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334556677777 68889999999888754 566667778899999999999999999998876533
Q ss_pred --------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 208 --------DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 208 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
+-+-+..++++|...|+-||..+-..|++++.+-|..
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345678889999999999999999999998887763
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.2 Score=45.99 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
|+.....+..+....++.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333444344444455555555555555555544555544444555555555544444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.13 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888899999999999999999998886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.3 Score=44.52 Aligned_cols=138 Identities=12% Similarity=0.033 Sum_probs=93.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 441 (645)
...|.+.|++..|...|++.... |. +...-+.++..... ..-..++..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677778888888887776542 00 11111112222111 1223456667777888888
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHH-HHHHHHH
Q 048812 442 LEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM-SRIRMKL 518 (645)
Q Consensus 442 ~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a-~~~~~~m 518 (645)
+.+|++.-.+. ... +|+...--=..||...|+++.|+..|+++++++|.|-.+-..|+.+-.+..+.++. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877665 333 45555555677889999999999999999999999988888888887777766554 7788888
Q ss_pred HhC
Q 048812 519 RDM 521 (645)
Q Consensus 519 ~~~ 521 (645)
-..
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.42 E-value=4.7 Score=34.82 Aligned_cols=130 Identities=11% Similarity=0.009 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+...-..++..+...+.......+++.+...+ ..+...++.++..|++.. .++..+++.. .++......++
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHH
Confidence 33445567888888889999999999988876 356777888888887653 3444555542 12223334577
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH-QNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
..+.+.+.++++.-++.+++... -.+..+..+ ++++.|.+.+++ +.++..|..++..+.
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~------~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFK------DAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHH------HHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77888888888888888876422 222233333 788888888775 335567776666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=6.3 Score=40.88 Aligned_cols=157 Identities=12% Similarity=0.128 Sum_probs=105.6
Q ss_pred hHH--HHHHHHHHHcC-----CHHHHHHHHHHHH-HcCCCCCHH-HHHHHHHHHh--------c-cCcHHHHHHHHHHhH
Q 048812 356 YLW--TSVIAAYAMAG-----HAQKAIDLFLEME-ETGTKPDQV-TFIALLSACS--------H-GGLVDEGYDFLSKKS 417 (645)
Q Consensus 356 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~-~~g~~pd~~-t~~~ll~a~~--------~-~g~~~~a~~~~~~~~ 417 (645)
..| ..++.|....- ..+.|+.+|.+.. ...+.|+-. .|..+..++. . .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66776665522 2467888999988 233677743 3333322221 1 234556666666666
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 418 RVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 418 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
+ +.| |......+..++.-.|+++.|..+|++. ...||. .+|....-.+.-.|+.++|.+.+++.+++.|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 455 5677777777788888999999999987 566653 466666666778899999999999999999976554
Q ss_pred HH--HHHHHHHHcCCchHHHHHHH
Q 048812 495 HV--LLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 495 y~--~l~~~~~~~g~~~~a~~~~~ 516 (645)
-+ ..+++|...+ .++|.+++-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 44 3444666544 677777763
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.21 Score=30.83 Aligned_cols=33 Identities=30% Similarity=0.268 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888999999999888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.5 Score=46.05 Aligned_cols=133 Identities=14% Similarity=0.237 Sum_probs=89.8
Q ss_pred HHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 048812 364 AYAMAGHAQKAIDLFLEME-ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 442 (645)
.....|+++++.++...=. -..++ ..-...++.-+-+.|-.+.|+++...-.. =.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 4455788888777664111 11122 34467777888888999998876543322 24566789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 443 EESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 443 ~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+.|.++.++.. +...|..|......+|+++.|++.|++. .-+..|+-+|...|+.+.-.++.+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999888774 7889999999999999999999999876 346678888999999888888777776665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.19 E-value=2.6 Score=36.46 Aligned_cols=78 Identities=9% Similarity=0.032 Sum_probs=57.2
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 49 RSCSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
...+.+......+..+++.+ ..++...|.|+..|++.. .......+.. ..+......++..|.+.+.++++.-++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 18 EKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYK 93 (140)
T ss_pred HhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHH
Confidence 33466788888888888887 478889999999999874 3444455542 3455666778888888888888888876
Q ss_pred HH
Q 048812 129 YL 130 (645)
Q Consensus 129 ~m 130 (645)
++
T Consensus 94 k~ 95 (140)
T smart00299 94 KD 95 (140)
T ss_pred hh
Confidence 55
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.18 E-value=2.2 Score=36.60 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 436 LGRAGHLEESANFITSM----PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
..+.|++++|.+.|+.+ |..| ....---|+.++.+.+++++|...+++.++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44678888888888776 3333 3345566888899999999999999999999887653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.84 E-value=8.9 Score=36.43 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT--KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
..|-.=+..-.+.|++++|...|+.+..... +-...+...++.+..+.++.++|....++..+.++-.|++. |.--+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 3344444455678888888888888886421 11255667777788888888888888888887777676643 22333
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-----------------hhH
Q 048812 434 DLLGRAGHLEESANFITSMP-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-----------------GAH 495 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~y 495 (645)
.+++ .|.... ..-|. .-...|..-|+++++.-|++. ..=
T Consensus 114 kgLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 114 KGLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3333 111111 00011 112344455555555566542 122
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
....+.|.+.|.|.-|..-++.|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 36778899999999999999999764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.73 E-value=18 Score=39.63 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=79.0
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+++.+.+...+|..-.--+.+--+.-+...|+..+|.++-++..+ ||-..|--=+.+++..+++++-+++.+....
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekfAkskks--- 743 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKFAKSKKS--- 743 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHHHhccCC---
Confidence 445555555666544444455556667788999999999999987 7888888888999999999988877765432
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 490 ~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
|.-|.=....|.+.|+.+||.+++-+.
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 466777888999999999999998554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.3 Score=42.38 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTK--PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
|+.-+..| +.|++.+|...|...++.... -....+..|..++...|++++|..+|..+.++++-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA--------- 214 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA--------- 214 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---------
Confidence 44433332 344555555555555543211 012233445555555555555555555555444433331
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 436 LGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+..+--|.......|+.++|...++++.+..|..+
T Consensus 215 ----------------------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 215 ----------------------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred ----------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 22333444445555566666666666666555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.56 E-value=2.9 Score=35.92 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=66.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKP---DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 437 (645)
-.....+.|++++|.+.|+.+... .+. ....-..++.++...+++++|...++..++.+.-.|+ ..|...+.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 344455678888888888877764 211 2345666777788888888888888877765444444 33444444444
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 438 RAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.-...+..+.-+- ...-| .+....|...|+++++..|++.
T Consensus 94 ~~~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 3332222111111 11111 2235678888888888888763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.56 E-value=11 Score=36.65 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=91.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCC
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 441 (645)
.......|++.+|..+|+........ +...-..+..++...|+++.|..++..+-.+.. .........=+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 34456678888888888887765222 345555677778888888888888776542110 0011112233455555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHcCCchH-HHHHHHH
Q 048812 442 LEESANFITSMPIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTET--DPLNDGAHVLLANIYAKAGRLDD-MSRIRMK 517 (645)
Q Consensus 442 ~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~--~p~~~~~y~~l~~~~~~~g~~~~-a~~~~~~ 517 (645)
..+..++-++..-.| |...--.|...+...|+.+.|.+.+-.++.. +-.+...-..|+.++..-|.-+. +.+.+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555555554445 5555566666777778877777777666663 34455666677777777664443 3344444
Q ss_pred H
Q 048812 518 L 518 (645)
Q Consensus 518 m 518 (645)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.50 E-value=3 Score=43.32 Aligned_cols=150 Identities=19% Similarity=0.122 Sum_probs=88.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH---
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE--- 443 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--- 443 (645)
+..+.+.-+++=++..+ +.||-.+-..++ +--.+.-+.++.+++++..+. |- . .|.+....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----A-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----H-------hhchhhhhhccc
Confidence 34455555555555554 457654443333 233445577888888877642 10 0 011110000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 444 ESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 444 ~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
...+.+..-...|-..+-.-|..++.+.|..++|.+.++++++..|. +-.....|++.+...+++.++..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 01111111122233445566777788899999999999999887764 4457778999999999999999999887655
Q ss_pred CCcccCceeE
Q 048812 522 GLKKQLGYSL 531 (645)
Q Consensus 522 ~~~~~~~~s~ 531 (645)
.+++...+++
T Consensus 325 ~lpkSAti~Y 334 (539)
T PF04184_consen 325 SLPKSATICY 334 (539)
T ss_pred cCCchHHHHH
Confidence 5555554443
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.48 E-value=14 Score=37.87 Aligned_cols=135 Identities=12% Similarity=0.142 Sum_probs=106.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-H
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY-G 430 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~ 430 (645)
+-...|...|..-.+..-.+.|..+|-+..+.| +.|+...+++++.-++ .|+..-|..+|+.-... -||...| +
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345678888888888888899999999999998 6788888888887655 57777889999876643 3444333 5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 431 CMVDLLGRAGHLEESANFITSM--PIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m--~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
-.++.+.+.++-+.|..+|+.. .+..+ ..+|..+|.--...|++..+..+-+++.++.|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677888999999999999865 23333 5689999998899999999999999999988865
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.97 E-value=10 Score=35.03 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCC----ChHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS-ACSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGC 431 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~ 431 (645)
.+..+...+...+++.++...+.........+. ........ ++...|+++.+...+..... ..| ....+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~ 172 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHH
Confidence 344444444455555566666655554322221 11111111 45566666666666665532 222 2233333
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
....+...++.++|...+.+. ...++ ...+..+...+...++.+.|...+.......|.....+..+...+...|.+
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRY 252 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH
Confidence 333355666667766666655 22232 456666666677777777777777777777766445555555555555666
Q ss_pred hHHHHHHHHHHh
Q 048812 509 DDMSRIRMKLRD 520 (645)
Q Consensus 509 ~~a~~~~~~m~~ 520 (645)
+++...+.....
T Consensus 253 ~~~~~~~~~~~~ 264 (291)
T COG0457 253 EEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHH
Confidence 777766666544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.65 E-value=16 Score=36.78 Aligned_cols=276 Identities=14% Similarity=0.092 Sum_probs=162.3
Q ss_pred cCChHHHHHHHccCC---CCCcchHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHhcCCChHHH
Q 048812 140 CGKLKEVCQLFDKLP---NRDVISWNTMISCY--TSMGMYREGLGLLSKMGAEGVSPDEV--TMVSLISARTKLRDLEMG 212 (645)
Q Consensus 140 ~g~~~~A~~~f~~m~---~~~~~~~n~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 212 (645)
.|+-..|+++-.+-. .-|....-.|+.+- .-.|+++.|.+-|+.|... |... -+..|.-.--+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 466666666554433 23444444444433 3369999999999999863 2211 233344444577999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCCChh--hHHHHHHHHHh---cCCHHHHHHHH
Q 048812 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI---DEVDVV--LWTTLVSGYVK---SNERDEARRLF 284 (645)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~--~~~~li~~~~~---~g~~~~A~~~~ 284 (645)
.+.-+..-..- +.-...+.+++...+..|+++.|.++.+.-+. .++++. .-..|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877766543 34456788899999999999999999987211 123322 11222222110 01111111111
Q ss_pred HhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHH-HHHH
Q 048812 285 DEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT-SVIA 363 (645)
Q Consensus 285 ~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~li~ 363 (645)
.+. ..- .||.+.=- .-..
T Consensus 253 ~~a-----------------------------------------------------------~KL--~pdlvPaav~AAr 271 (531)
T COG3898 253 LEA-----------------------------------------------------------NKL--APDLVPAAVVAAR 271 (531)
T ss_pred HHH-----------------------------------------------------------hhc--CCccchHHHHHHH
Confidence 111 100 23332211 2245
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCH
Q 048812 364 AYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 442 (645)
++.+.|+..++-.+++.+-+....|+.. .+....+.|+.- ..-++...+-..++|+ .+..-.+..+-...|++
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 7788899999999999998876666632 222334555432 2223333333345665 56666777777788888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHh
Q 048812 443 EESANFITSM-PIPPDVSIWSSLLRAC-RCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 443 ~~A~~~~~~m-~~~pd~~~~~~ll~a~-~~~g~~~~a~~~~~~~~~ 486 (645)
..|..--+.. ...|....|..|...- ...||-.++...+.+.+.
T Consensus 346 ~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 346 SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 8777655544 4567788887777774 445899999988888876
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.94 Score=43.87 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
++..++.++...|+.+.+...++++.+.+|-+...|..|+.+|...|+...|+..++.+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666666677777777777777777777777777777777777777777777776655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.62 E-value=31 Score=39.99 Aligned_cols=82 Identities=13% Similarity=0.016 Sum_probs=37.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~ 475 (645)
.+.+|-..|++.++..+..++.. +-.--..+-..|+.-+...++.-+|-++..+....|... +.-+++...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHH
Confidence 34455555555555555544431 100012222455555566666666666555543222211 12233334455
Q ss_pred HHHHHHHHH
Q 048812 476 LAEHAFKHL 484 (645)
Q Consensus 476 ~a~~~~~~~ 484 (645)
+|.++....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 555554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.39 E-value=4.3 Score=39.81 Aligned_cols=113 Identities=11% Similarity=0.010 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHHHHcCCHH
Q 048812 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM----VDLLGRAGHLE 443 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 443 (645)
+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...|+...|.-+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444555555555443 333444444444555555555555555544442 123333222222 22233455555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048812 444 ESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKH 483 (645)
Q Consensus 444 ~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~ 483 (645)
+|++.-++. ++.| |.-.-.++...+-..|+..++.+...+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555443 3322 333333344444444555555554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.9 Score=39.57 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=91.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcC
Q 048812 364 AYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMVDLLGRAG 440 (645)
Q Consensus 364 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g 440 (645)
.|-..|-..-|.-=|.+... +.|+ ...||-+.--+...|+++.|.+.|+...+ +.|. -.+.|.=|.. .-.|
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~-YY~g 147 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIAL-YYGG 147 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceee-eecC
Confidence 35555666666655665554 7888 56777777788899999999999998774 5664 2233332322 2357
Q ss_pred CHHHHHHHHHhC----CCCCCHHHHHHHHH--------------HHHhcCChH-------------HHHHHHHHHHhcCC
Q 048812 441 HLEESANFITSM----PIPPDVSIWSSLLR--------------ACRCHQNVK-------------LAEHAFKHLTETDP 489 (645)
Q Consensus 441 ~~~~A~~~~~~m----~~~pd~~~~~~ll~--------------a~~~~g~~~-------------~a~~~~~~~~~~~p 489 (645)
++.-|.+=|... |..|=...|--|.. -+..+.+-. .-+.+++++.+-..
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 888777655443 43333334433222 122221100 01223333333222
Q ss_pred CC-------chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 490 LN-------DGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 490 ~~-------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++ ..+|.-|..-|...|..++|..+++.....+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22 3578889999999999999999999876543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.4 Score=38.71 Aligned_cols=87 Identities=7% Similarity=-0.056 Sum_probs=53.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
.--+-+.|++++|..+|+-+...+.- |..-+..|..+|-..++++.|...|......+. .|+...--...+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33455678888888888777664321 333344444455556777777777777665552 3333344456677777777
Q ss_pred HHHHHHHcc
Q 048812 245 GEAQKLLGR 253 (645)
Q Consensus 245 ~~A~~~~~~ 253 (645)
+.|+..|+.
T Consensus 122 ~~A~~~f~~ 130 (165)
T PRK15331 122 AKARQCFEL 130 (165)
T ss_pred HHHHHHHHH
Confidence 777777776
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.90 E-value=20 Score=36.50 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTK--P-DQVTFIALLSACSH---GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-d~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
.|+-.|-...+++.-+++++.|...... + ....-.....|+.+ .|+.++|.+++..+.. ..-.++.++|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHH
Confidence 4555688999999999999999874211 1 11112233446666 9999999999998552 24456777887776
Q ss_pred HHHH----H-----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh----HHHHHHH----HHHHhc---CC-CC
Q 048812 434 DLLG----R-----AGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNV----KLAEHAF----KHLTET---DP-LN 491 (645)
Q Consensus 434 ~~~~----~-----~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~----~~a~~~~----~~~~~~---~p-~~ 491 (645)
..|- . ...+++|.+.+.+. .++||...--.+..-+...|.. .+..++. ..+.+. ++ .+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 6553 2 22478888888876 5666654322222223333322 1222222 111121 12 23
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 492 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
-..+.++..++.-.|+.++|.+..++|.+..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 4566689999999999999999999998653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.84 E-value=8.7 Score=37.26 Aligned_cols=121 Identities=13% Similarity=0.127 Sum_probs=87.5
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCC
Q 048812 398 SACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS---LLRACRCHQN 473 (645)
Q Consensus 398 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~---ll~a~~~~g~ 473 (645)
......|+..++...|+..... .| +...--.|...|...|+.++|..++..+|.+-...-|.. -|..+.+..+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3456789999999999988853 33 356677889999999999999999999976544444433 2223333333
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
..+... +++-...+|+|...-..|...|...|+.++|.+.+=.+.+++
T Consensus 219 ~~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 219 TPEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 333322 333445789999999999999999999999998877765544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.5 Score=46.28 Aligned_cols=149 Identities=17% Similarity=0.118 Sum_probs=101.7
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHH
Q 048812 85 FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164 (645)
Q Consensus 85 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~l 164 (645)
-.|+++.|-.++..++++. -+.++.-+-++|..++|+++--.-...-.+..+.|+++.|.++..+. .+..-|..|
T Consensus 598 mrrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~--~s~~Kw~~L 672 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEA--NSEVKWRQL 672 (794)
T ss_pred hhccccccccccccCchhh---hhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhh--cchHHHHHH
Confidence 3466777766666665332 34455555666777777665322211114556778888888876554 467789999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
..+..+.|++..|.+.|..... |.+|+-.+...|+-+....+-....+.| .. |.-.-+|...|++
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDY 737 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCH
Confidence 9999999999999999987654 5667777778888776666666666665 22 3334467788999
Q ss_pred HHHHHHHcc
Q 048812 245 GEAQKLLGR 253 (645)
Q Consensus 245 ~~A~~~~~~ 253 (645)
+++.+++.+
T Consensus 738 ~~C~~lLi~ 746 (794)
T KOG0276|consen 738 EECLELLIS 746 (794)
T ss_pred HHHHHHHHh
Confidence 999998876
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.79 E-value=10 Score=39.61 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=64.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCCH--HHHHHHHHHHH
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPI--PPDV--SIWSSLLRACR 469 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~pd~--~~~~~ll~a~~ 469 (645)
..+..++.+.|+.++|.+.|+++.+++...-...+...|+..|...+++.++..++.+... -|.. ..|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4456667788888888888888876554333455677788888888888888888887631 1332 34555443444
Q ss_pred hcCC---------------hHHHHHHHHHHHhcCCCCc
Q 048812 470 CHQN---------------VKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 470 ~~g~---------------~~~a~~~~~~~~~~~p~~~ 492 (645)
..++ ...|.++..++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3333 1235677888888777543
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.79 E-value=15 Score=39.24 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=110.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQ-----VTFIALLSACSH----GGLVDEGYDFLSKKSRVYNIKPKMQ 427 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 427 (645)
...+++..+-.|+-+.+++++.+-.+.+ ++-.. .+|..++..+.. ....+.+.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 4567777788899999999998876532 22111 234444544433 46788899999999864 56655
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH-HHH
Q 048812 428 HYGC-MVDLLGRAGHLEESANFITSMP-IP-----PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV-LLA 499 (645)
Q Consensus 428 ~~~~-li~~~~~~g~~~~A~~~~~~m~-~~-----pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~-~l~ 499 (645)
.|.- -...+...|++++|.+.|++.- .+ .....+--+.-.+....++++|...|.++.+........|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5533 3456778899999999999752 11 12223333455577789999999999999997766555555 455
Q ss_pred HHHHHcCCc-------hHHHHHHHHHHh
Q 048812 500 NIYAKAGRL-------DDMSRIRMKLRD 520 (645)
Q Consensus 500 ~~~~~~g~~-------~~a~~~~~~m~~ 520 (645)
-+|...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 566788888 788888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.52 E-value=9.7 Score=32.13 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
..+....-++.+...|+-+.-.++...+ .-++++...-.+.+||.+.|+..++.+++.++.+.+-
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4456667778899999999999998886 3568889999999999999999999999999988654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.15 E-value=2.3 Score=45.31 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHH----cCCHHHH
Q 048812 375 IDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-----QHYGCMVDLLGR----AGHLEES 445 (645)
Q Consensus 375 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~----~g~~~~A 445 (645)
.-+|.-|... ++| .+..+++...-.|+-+.|.+.+....+..++.-.. -.|..++..+.. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555543 444 35566677777899999999998877644444332 234444443332 4578899
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcC----CCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 446 ANFITSM-PIPPDVSIWSSLLRA-CRCHQNVKLAEHAFKHLTETD----PLNDGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 446 ~~~~~~m-~~~pd~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~----p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
.++++.+ ..-|+...|.-.-.- +...|++++|.+.++++.... .-....+.-++..+.-..+|++|.+.+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999998 445887777554443 778999999999999877522 1123456678889999999999999999997
Q ss_pred hCC
Q 048812 520 DMG 522 (645)
Q Consensus 520 ~~~ 522 (645)
+..
T Consensus 333 ~~s 335 (468)
T PF10300_consen 333 KES 335 (468)
T ss_pred hcc
Confidence 743
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.11 Score=45.37 Aligned_cols=117 Identities=14% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHh
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (645)
+.+....+....+.+.+...++...|.|+..|++.++.+...+.++.... .-...++..+-+.|.+++|.-+|.++.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 21 NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHHcc
Confidence 34555566677777766667799999999999999988888888874333 445677888888899999998887654
Q ss_pred hcC---chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCC
Q 048812 132 TRT---VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGM 173 (645)
Q Consensus 132 ~~~---~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~ 173 (645)
... .++...++++.|.+.+.+. +|...|..+++.+...+.
T Consensus 98 ~~~~al~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 98 NHDEALEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp THTTCSSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred cHHHHHHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 433 2233445555555444444 356778888877766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.8 Score=35.10 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=43.4
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCC
Q 048812 401 SHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM----PIPPD--VSIWSSLLRACRCHQN 473 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd--~~~~~~ll~a~~~~g~ 473 (645)
+..|+++.|++.|.+... +-| ....||.=..++--.|+.++|++=+++. +-+.- -..|..=..-|+..|+
T Consensus 54 aE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555555555544442 222 3444555555555555555554444332 11100 1112222233677788
Q ss_pred hHHHHHHHHHHHhcCCCC
Q 048812 474 VKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~ 491 (645)
.+.|..-|+.+-+++..-
T Consensus 131 dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHhHHHHHHhCCHH
Confidence 888888888877776543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.80 E-value=3.7 Score=40.23 Aligned_cols=115 Identities=14% Similarity=-0.000 Sum_probs=89.3
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHH----HHHHHHHHhcCChH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIW----SSLLRACRCHQNVK 475 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~----~~ll~a~~~~g~~~ 475 (645)
..|...+|-..++++.++ .+.|...+.-.-+++.-.|+.+.-...++++ |. .||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777777888888865 3446777777778888999999888888887 43 5665433 33333456789999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+|++..++.++++|.+..+.-.+..++.-.|+..++.+...+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999888888888888888888888876654
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.71 E-value=4.6 Score=32.03 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048812 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 187 (645)
|++...+...+..+++..+.+-+- +...|++++|..+.+.++.||+..|-+|-.. +.|..+++..-+.+|-.+
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIRlsS-----LmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIRLSS-----LMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHH-----HHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 344444555554566666555543 2567999999999999999999999888654 567777777777777777
Q ss_pred CCCCChhhHHH
Q 048812 188 GVSPDEVTMVS 198 (645)
Q Consensus 188 g~~p~~~t~~~ 198 (645)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.60 E-value=2.4 Score=38.30 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=67.3
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 435 LLGRAGHLEESANFITSM-P-IPP-----DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~-~~p-----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
-+.+.|++++|..-+... . .++ -.+.|..-..+..+.+.++.|+.-..+.++++|.+..+...-..+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355667777777666654 1 111 134455555667888999999999999999999887888888889999999
Q ss_pred chHHHHHHHHHHhCC
Q 048812 508 LDDMSRIRMKLRDMG 522 (645)
Q Consensus 508 ~~~a~~~~~~m~~~~ 522 (645)
+++|+.=++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999997744
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.64 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+|..+...+...|+.++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888774
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.25 E-value=36 Score=39.56 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=81.3
Q ss_pred HHHHcCChhHHHHHHHHHhhcCch------hhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048812 113 NQLINGYPQEVFAIYLYLVTRTVL------LNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGA 186 (645)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~------~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~ 186 (645)
+-..+.++.+=+.++++....... =...+++++|+.-+.++. ...|+-.+.---+.|.+.+|+.++
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly----- 931 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY----- 931 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-----
Confidence 334456666766666666543311 123466677766665554 234444555455666777777665
Q ss_pred CCCCCChhhHHHHHHHHh----cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCC-CCh
Q 048812 187 EGVSPDEVTMVSLISART----KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE-VDV 261 (645)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~ 261 (645)
.|+...+..+..+|+ ....++.|--.|+..-+. .--+.+|-.+|++.+|..+-.+ +.. .|.
T Consensus 932 ---~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~q--l~~~~de 997 (1265)
T KOG1920|consen 932 ---KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQ--LSEGKDE 997 (1265)
T ss_pred ---ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHh--hcCCHHH
Confidence 567666666655543 334444444433332111 1234556666666666666655 222 232
Q ss_pred hh--HHHHHHHHHhcCCHHHHHHHHHhc
Q 048812 262 VL--WTTLVSGYVKSNERDEARRLFDEM 287 (645)
Q Consensus 262 ~~--~~~li~~~~~~g~~~~A~~~~~~m 287 (645)
.. --.|+.-+...+++-+|-++..+-
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 22 245666666667666666665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.06 E-value=35 Score=36.51 Aligned_cols=347 Identities=12% Similarity=0.036 Sum_probs=186.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTM-VSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 235 (645)
+...|+++|.---+....+.+...+..++.. -|..+-| .....-=.+.|..+.+.++|+.-++ |++.....|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 5566777776555555555666667777654 5665533 2333333466778888888887774 4566666666655
Q ss_pred HHHH-HcCCHHHHHHHHcccCC-CC---CChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchh
Q 048812 236 DMYF-KCGKIGEAQKLLGRYEI-DE---VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFK 310 (645)
Q Consensus 236 ~~y~-~~g~~~~A~~~~~~m~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~ 310 (645)
.... ..|+.+..++.|+..+. .+ .+...|-..|.--...+++.....++++..+--..-++....-|.+.-+...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 4333 45677777777776221 12 2556688788777778888888888888764333333333322222110000
Q ss_pred hhhhccccchhhHHHHHHHHH---HcCCCCCcHHHHHHHHhhcCcCC-h--hHH-------HHHHHHHHHcCCHHHHHHH
Q 048812 311 YKSCASIGALYHGIWVHVYIK---KNQISIDNIELAYDLFSEISEKN-V--YLW-------TSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 311 ~~a~~~~~~l~~g~~i~~~~~---~~~~~~~~~~~A~~~f~~~~~~~-~--~~~-------~~li~~~~~~g~~~~A~~l 377 (645)
.. .+-..+...++-..+. +..+.....+.-....+....|. . ..- +..-..|-..-...+....
T Consensus 201 ~~---~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 201 EK---ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred hh---hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 00 0000000000000000 01111111111111111111111 0 011 1111122222233333334
Q ss_pred HHHHHHc---CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 048812 378 FLEMEET---GTKP----DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFIT 450 (645)
Q Consensus 378 ~~~m~~~---g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 450 (645)
|+.-+.. .++| +..+|...+.--...|+.+...-.|+.... .+..=...|--.+.-....|+.+-|..++.
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 4443322 1333 356788888888888999988888877652 111124555566666666799888888776
Q ss_pred hC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 451 SM-----PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 451 ~m-----~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
.. +..|......+.+ +-..||...|..+++.+.+--|....+-.--+++..+.|+.+.+..
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 65 3344444444333 4557899999999999988558766655567777888888888873
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.04 E-value=28 Score=35.36 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
++.+.+...|+++.++.|.....|..+...+.+
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 778888888888888888777777766666543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.68 Score=29.16 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
+|..|...|...|++++|+.++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666666666666666443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.33 E-value=27 Score=34.31 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHcccCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 230 LLNYLVDMYFKCGKIG---EAQKLLGRYEIDEVD-VVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~---~A~~~~~~m~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+...|+.+|...+..+ +|.++.+.+....|+ ...+-.-+..+.+.++.+++.+.+.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 4555666666666544 344444443223333 3334344455555666666666666665
|
It is also involved in sporulation []. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=48 Score=36.95 Aligned_cols=54 Identities=13% Similarity=-0.058 Sum_probs=26.2
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHcccC-CCCCChhhHHHHHHHHHhcCCHH
Q 048812 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYE-IDEVDVVLWTTLVSGYVKSNERD 278 (645)
Q Consensus 225 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~~~~~~~~~~li~~~~~~g~~~ 278 (645)
+.+......+..+....|+.++|......+= .........+.++..+.+.|...
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 3344444555566666666554433333210 11223455666666666555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.04 E-value=1.2 Score=28.02 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEME 382 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~ 382 (645)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.02 E-value=14 Score=36.37 Aligned_cols=162 Identities=9% Similarity=0.010 Sum_probs=93.7
Q ss_pred HHcCCHHHHHHHHHHHHHcC--CCCCHH------HHHHHHHHHhccC-cHHHHHHHHHHhHHhc-------CCCCC----
Q 048812 366 AMAGHAQKAIDLFLEMEETG--TKPDQV------TFIALLSACSHGG-LVDEGYDFLSKKSRVY-------NIKPK---- 425 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g--~~pd~~------t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~-------~~~p~---- 425 (645)
.+.|+.+.|..++.+....- ..|+.. .|+.-.. ....+ +++.|...+++..+-. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46799999999999887532 345432 2333333 33445 8899988888766431 12233
Q ss_pred -hHHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 426 -MQHYGCMVDLLGRAGHLE---ESANFITSM-PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 426 -~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
..+...++.+|...+..+ +|.++++.+ .--|+ +.++-.-+..+.+.++.+.+.+.+.+|+..-+-....+...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 345566777777776654 444555544 11122 334444556666688888888888888875443334555555
Q ss_pred HHHHH--cCCchHHHHHHHHHHhCCCcccCc
Q 048812 500 NIYAK--AGRLDDMSRIRMKLRDMGLKKQLG 528 (645)
Q Consensus 500 ~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~ 528 (645)
..+-. ......|...+..+....+.+.+.
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55422 122345666666665555544444
|
It is also involved in sporulation []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.83 E-value=28 Score=33.79 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
++...+.|...|.+.+|.++.++++.++|-+...+-.|++.|+..|+--.|.+-++.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556689999999999999999999999999999999999999998778877777643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.68 E-value=26 Score=33.37 Aligned_cols=167 Identities=16% Similarity=0.140 Sum_probs=100.0
Q ss_pred CCCCcHHHHHHHHhhcCcCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHhcc--
Q 048812 335 ISIDNIELAYDLFSEISEKN------VYLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQ--VTFIALLSACSHG-- 403 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~--~t~~~ll~a~~~~-- 403 (645)
+..+++++|.+.|+.+...- ..+--.++-++-+.+++++|+..+++.... +-.||. +.|...++-+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45569999999999887521 233444566777899999999999997654 444552 3444444433222
Q ss_pred --CcHH---HHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHH
Q 048812 404 --GLVD---EGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSI--WSSLLRACRCHQNVKL 476 (645)
Q Consensus 404 --g~~~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~--~~~ll~a~~~~g~~~~ 476 (645)
.+.. +|..-|+.++..+ |+. .-..+|...+..+. |... =.++.+-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 2222 2333333333332 221 11111111111110 1000 0234556889999999
Q ss_pred HHHHHHHHHhcCCCCch---hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 477 AEHAFKHLTETDPLNDG---AHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 477 a~~~~~~~~~~~p~~~~---~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|..-++++++.-|+.+. .+..|.++|...|-.++|.+.-+-+..
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99999999997766544 455678889999999999988776644
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.17 E-value=14 Score=32.04 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=60.7
Q ss_pred HcCCHHHHHHHHcccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhcccCC-chhHHHHHHhhhccCCchhhhhhc
Q 048812 240 KCGKIGEAQKLLGRYEIDEVD---VVLWTTLVSGYVKSNERDEARRLFDEMVERN-LISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
..++.+++..+++.|..-.|+ ..++- ...+...|++++|.++|++..+.. ..++...+.++|-.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~---------- 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN---------- 89 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH----------
Confidence 478888888888886555553 23333 334678899999999999887544 33444444433322
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEME 382 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 382 (645)
...-..|..........|...+|+.+.+.+.
T Consensus 90 ------------------------------------al~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 90 ------------------------------------AKGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------------------------------------hcCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 1223346666666667777777887777776
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.99 E-value=2.7 Score=36.82 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=22.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 471 ~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
.++.+.++.++.-+.-+.|..+..-..-..++...|+|.+|.++++.+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.93 E-value=0.88 Score=30.19 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=10.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHcc
Q 048812 232 NYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~~~~ 253 (645)
..+...|...|++++|.++|++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444444444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.61 E-value=42 Score=34.64 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYN-IKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSI-WSSLLRAC 468 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~-~~~ll~a~ 468 (645)
.|-..+++-.+..-++.|+.+|-+..+ .| +.+++.++++++.-++ .|+..-|.++|+-- ..-||... -.-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345566666677778888999988884 45 5678888898888665 67778888888753 32344443 35566666
Q ss_pred HhcCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 469 RCHQNVKLAEHAFKHLTETDP--LNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p--~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...++-+.|..+|+..++.-. .-...|..++.--..-|++..|..+-+.|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778888899999997665221 2245777788877888888877777777755
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.56 E-value=9.3 Score=34.22 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKK 525 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 525 (645)
+++|...|+++.+.+|.+ ..|..-+.+.. +|-+++.++.++++..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 577888888888899987 67776666664 3888888887776543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.47 E-value=13 Score=37.11 Aligned_cols=162 Identities=13% Similarity=0.062 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPD---QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KMQ 427 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 427 (645)
.+|-.+..++-+.-++.+++.+-..-.. .|..|. .....++-.|....+.++++.+.|+...+...-.. ...
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3445555555555555566555443322 123331 12233455566667778888888887764222111 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH-------hCCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCch
Q 048812 428 HYGCMVDLLGRAGHLEESANFIT-------SMPIPPDVS-----IWSSLLRACRCHQNVKLAEHAFKHLTET--DPLNDG 493 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~-------~m~~~pd~~-----~~~~ll~a~~~~g~~~~a~~~~~~~~~~--~p~~~~ 493 (645)
+|-.|...|++..++++|.-+.. ..++.--.. +.-.+.-+++..|.+..|.+.-++..++ ...|..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 78888888888888887664443 333321111 2233455678888888888888877663 222323
Q ss_pred ----hHHHHHHHHHHcCCchHHHHHHHH
Q 048812 494 ----AHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 494 ----~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
....+.++|-..|+.|.|..-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 334688888888887776655543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.33 E-value=18 Score=32.69 Aligned_cols=95 Identities=11% Similarity=0.154 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC----hH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ--VTFIALLSACSHGGLVDEGYDFLSKKSRVYNI--KPK----MQ 427 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~----~~ 427 (645)
..|..+..-|.+.|+.++|++.|.++.+.-..|.. ..+..+|..+...+++.....+..+......- .++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46788899999999999999999999987666653 45678888888889998888887776632111 111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
+|..|. +...|++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 333333 23467888888887766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.25 E-value=27 Score=32.04 Aligned_cols=198 Identities=19% Similarity=0.140 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEI---DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
..........+...+.+..+...+..... .......+..+...+...+....+.+.+......+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----------- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----------
Confidence 45566666777777777777776665321 2224445555666666666666776666655432211
Q ss_pred cCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 048812 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIA-AYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 305 ~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~ 383 (645)
+...+..... .+...|++++|...|.+...
T Consensus 128 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 128 -------------------------------------------------PDLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred -------------------------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0111112222 67788899999999888855
Q ss_pred cCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 048812 384 TGTKP----DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP--KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP 456 (645)
Q Consensus 384 ~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 456 (645)
..| ....+......+...++.+.+...+..... ..| ....+..+...+...+++++|...+... ...|
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 159 --LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred --cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 333 334444444456778888899988888774 233 3677788888888888999999888876 4445
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 457 D-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 457 d-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+ ...+..+...+...++.+.+...+.+.....|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 455556666666777899999999999998886
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.99 E-value=24 Score=31.13 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=55.7
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHH
Q 048812 400 CSHGGLVDEGYDFLSKKSRVYNIKPKM-QHYGCMVDLLGRAGHLEESANFITSMP-IPPDVSIWSSLLRACRCHQNVKLA 477 (645)
Q Consensus 400 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a 477 (645)
-...++.+++..++..+.- +.|.. .+-..-...+.+.|++.+|..+|+++. -.|....-.+|+.-|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3456677777777777763 55652 222333445678888888888888883 334445556677667666555555
Q ss_pred HHHHHHHHhcCCC
Q 048812 478 EHAFKHLTETDPL 490 (645)
Q Consensus 478 ~~~~~~~~~~~p~ 490 (645)
....+++++.+++
T Consensus 97 r~~A~evle~~~d 109 (160)
T PF09613_consen 97 RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHhcCCC
Confidence 5666667776653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.86 E-value=7.5 Score=35.23 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=50.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV--TMVSLISARTKLRDLEMGKNLHLFLEES 222 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (645)
..|..+..-|.+.|+.++|++.|.++.+....|... .+..+|+.+...+++..+......+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 468889999999999999999999998875555433 5677888888888988888776666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.63 E-value=39 Score=33.55 Aligned_cols=134 Identities=10% Similarity=0.153 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCH
Q 048812 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSH--GG----LVDEGYDFLSKKSRVYNIKP--KMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 371 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~g----~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 442 (645)
+++.+.+++.|.+.|.+-+..+|.+....... .. ...++..+|+.|++.+.+-- +-..+..|+-. +.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788999999999888888774443333 22 35678999999998776533 33444444322 33333
Q ss_pred H----HHHHHHHhC---CCCC-CHH-HHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 443 E----ESANFITSM---PIPP-DVS-IWSSLLRACRCHQN--VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 443 ~----~A~~~~~~m---~~~p-d~~-~~~~ll~a~~~~g~--~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
+ +++.+++.+ ++.. |.. ....++.-+....+ ..++.++++.+.+.+-.-...|...+.+++-.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~ 230 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLE 230 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcC
Confidence 2 333333333 4433 332 33333333322222 335666666666644322223334444444333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.36 E-value=22 Score=31.65 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=10.1
Q ss_pred HHHHHHHHcCCHHHHHHHHcc
Q 048812 233 YLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~ 253 (645)
+|.-+-.+.|++.+|.+.|.+
T Consensus 172 ALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHhHHHHhccchHHHHHHHHH
Confidence 344444445555555555544
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.33 E-value=4.3 Score=34.25 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhc---CChHHHHHHHHHHHh-cCCCCchhH-HHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 457 DVSIWSSLLRACRCH---QNVKLAEHAFKHLTE-TDPLNDGAH-VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 457 d~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~-~~p~~~~~y-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
+..+--.+..++.+. .+..+++.+++.+.+ -.|....-| ..|.-.+.+.|+++.+.++.+...+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e--------- 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE--------- 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC---------
Confidence 333333344444443 356778888888886 445443333 356777888889999988888776532
Q ss_pred EEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc
Q 048812 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571 (645)
Q Consensus 532 i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 571 (645)
|+..++...=+.+..+|.++|++
T Consensus 102 -----------------~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 102 -----------------PNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred -----------------CCcHHHHHHHHHHHHHHhhccee
Confidence 34445554445677788888876
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.19 E-value=3.2 Score=35.80 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=32.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 471 ~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.++.++++.++..+.-+.|+.+..-..-..++...|+|+||.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666666666666666666666666666666666666666665443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.86 E-value=49 Score=36.80 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=22.0
Q ss_pred hHHHHHHHHH-----HHHcCCHHHHHHHHHhCCCCC
Q 048812 426 MQHYGCMVDL-----LGRAGHLEESANFITSMPIPP 456 (645)
Q Consensus 426 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~p 456 (645)
..++..|+++ +...|++++|++.++++++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 4566666554 568899999999999998877
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.38 E-value=2.3 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777888888888888888887776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.15 E-value=38 Score=33.62 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048812 371 AQKAIDLFLEMEETGTKPDQVTFIAL 396 (645)
Q Consensus 371 ~~~A~~l~~~m~~~g~~pd~~t~~~l 396 (645)
..++.++++.+.+.|+++....|..+
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHH
Confidence 45778888888888888776665443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=83.91 E-value=57 Score=33.82 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=28.1
Q ss_pred CChhhhhhHHHHHHhcCChHHHHHHHhhCC----C----CCcccHHHHHHHH
Q 048812 71 RDPQISTQVFEFLVFTGDLGYAQQIIRQGD----E----PEIKIWNSIIENQ 114 (645)
Q Consensus 71 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~----~----~~~~~~~~li~~~ 114 (645)
+|-..-+..++.+...|.+.+++.++++|. + -|+.+||.++-.+
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 455556666677777777777777777664 1 3566666644444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.76 E-value=7.1 Score=27.15 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCc
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGL 570 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 570 (645)
...++-++.+.|++++|.+..+.+.+ ..|...++......+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45678889999999999999999866 346677777777778888888874
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.57 E-value=1.4e+02 Score=37.96 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGK 213 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 213 (645)
|.-....|++..|...|+++.+. .|+ ..+++.+++.-...+.+....
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHH
Confidence 33445566777777777777655 333 445666665555555555443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.50 E-value=12 Score=35.65 Aligned_cols=187 Identities=10% Similarity=0.085 Sum_probs=120.7
Q ss_pred cCCCCCcHHHHHHHHhhcCc----C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC--CHHHHHHHHHHH
Q 048812 333 NQISIDNIELAYDLFSEISE----K---NVYLWTSVIAAYAMAGHAQKAIDLFLEMEET---GTKP--DQVTFIALLSAC 400 (645)
Q Consensus 333 ~~~~~~~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p--d~~t~~~ll~a~ 400 (645)
.|+..+..++|..-|....+ + .-...-.||..+.+.|++++.++.|.+|... .+.- +..+.++++.-.
T Consensus 36 K~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyi 115 (440)
T KOG1464|consen 36 KGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYI 115 (440)
T ss_pred ccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 45666788899988887654 1 2234567899999999999999999998642 2222 356778888877
Q ss_pred hccCcHHHHHHHHHHhHHh----cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC--C-----CC-------CHHHHH
Q 048812 401 SHGGLVDEGYDFLSKKSRV----YNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP--I-----PP-------DVSIWS 462 (645)
Q Consensus 401 ~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~-----~p-------d~~~~~ 462 (645)
+.+.+.+.-.++++.-... .+-..-..+-.-|...|...|.+.+-.++++++. . .- =..+|.
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 7776666655555433221 1112223444667788888888888888887761 0 01 134677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH------HHHHHHHHHcCCchHHHH-HHHHHH
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH------VLLANIYAKAGRLDDMSR-IRMKLR 519 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y------~~l~~~~~~~g~~~~a~~-~~~~m~ 519 (645)
.=|..|..+++-..-..++++.+.+...-|-.. .+=..+..+.|+|++|-. .|+..+
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 777888889999999999999988653222111 122345667788887753 444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.45 E-value=32 Score=30.63 Aligned_cols=133 Identities=15% Similarity=0.168 Sum_probs=81.2
Q ss_pred HHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhcc
Q 048812 61 HSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKC 140 (645)
Q Consensus 61 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 140 (645)
..-+.+.++++++.++..|++.+.+.|.+..-..++.--.-+|.......+-.+. +....+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~----------------- 77 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPA----------------- 77 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHH-----------------
Confidence 3344567899999999999999999999999888887654444333333222211 111111
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 048812 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLE 220 (645)
Q Consensus 141 g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (645)
..-|..++.++. ..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++....
T Consensus 78 --~Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 78 --YQLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --HHHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222444444433 25666778888899999998888775322 22233446666666666665555555555
Q ss_pred Hh
Q 048812 221 ES 222 (645)
Q Consensus 221 ~~ 222 (645)
..
T Consensus 148 ~~ 149 (167)
T PF07035_consen 148 ER 149 (167)
T ss_pred Hh
Confidence 43
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.6 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666666655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.63 E-value=12 Score=36.37 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR----VYNIKPKMQHYG 430 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 430 (645)
..++..++..+...|+.+.+...++++... -+-|...|..++.+|...|+...|+..|+.+.+ +.|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456777888888888888888888888875 244778888888888888888888888877664 446666655544
Q ss_pred HHHH
Q 048812 431 CMVD 434 (645)
Q Consensus 431 ~li~ 434 (645)
....
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.47 E-value=2.4 Score=26.29 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=14.1
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHH
Q 048812 225 KISGSLLNYLVDMYFKCGKIGEAQ 248 (645)
Q Consensus 225 ~~~~~~~~~li~~y~~~g~~~~A~ 248 (645)
+.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666666554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.17 E-value=1.3 Score=38.42 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=63.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHH
Q 048812 199 LISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278 (645)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~ 278 (645)
++..+.+.+.+....++++.+.+.+...+....+.++..|++.+..+...++++. ... .-...++..|-+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~--~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT--SNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS--SSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc--ccc---cCHHHHHHHHHhcchHH
Confidence 5667777788888888888888777667788899999999999888888888875 322 33345677777788888
Q ss_pred HHHHHHHhcc
Q 048812 279 EARRLFDEMV 288 (645)
Q Consensus 279 ~A~~~~~~m~ 288 (645)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8888887765
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.97 E-value=65 Score=36.07 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG 440 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 440 (645)
+|.-|....+..+-..+++.+.+.|+. +...-..||.+|.+.+++++-.++.+..- + |.- ..-....+..+-+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhC
Confidence 344444455556666677777777765 33344567778888888877666554322 1 111 112344566677777
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048812 441 HLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHL 484 (645)
Q Consensus 441 ~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~ 484 (645)
-+++|.-+-.+.+. +......++ -..+|+++|.+.++.+
T Consensus 478 yl~~a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777777766653 333333333 3457788887776654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.28 E-value=16 Score=33.40 Aligned_cols=79 Identities=19% Similarity=0.150 Sum_probs=55.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHHcCCH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEES---TMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~ 244 (645)
..+.|+ ++|++.|-++...+.--++.....|...| ...|.+++.+++-.++.. +-.+|+.++.+|++.|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 67888888888776554444444444444 467888888888777664 2256788888888888888888
Q ss_pred HHHH
Q 048812 245 GEAQ 248 (645)
Q Consensus 245 ~~A~ 248 (645)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8775
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=63 Score=31.76 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
+|...-..-+.++++.|+ ..|+..+-+..+.+ + ....++.++...|.. +|...+..+.
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 344444455555555555 34444444444332 1 233455666666664 4555555555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 5e-09
Identities = 85/633 (13%), Positives = 181/633 (28%), Gaps = 222/633 (35%)
Query: 33 KFANVCPVSLDVIMVERSCSSIDEFERIHSHLITT----NLMRDPQISTQV---FEFL-- 83
++ ++ V D + C + + + +++ +++ + F L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPK---SILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 84 -------VFTGDL---GY---AQQIIRQGDEPEI----------KIWNSIIENQLINGYP 120
F ++ Y I + +P + +++N NQ+ Y
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYN 130
Query: 121 QEVFAIYLYLVTRTVLLNK-------------CGK--L-KEVCQ---LFDKLPNRDVISW 161
V + YL R LL GK + +VC + K+ + I W
Sbjct: 131 --VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IFW 186
Query: 162 NTMISCYTSMGMYREGLGLLSKMGAEGVSP------------------------------ 191
+ +C + + LL ++ S
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 192 ----DEV--------------TMV---------SLISARTKLRDLEMGKNLHLFLEESTM 224
V ++ L +A T + + + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEVK 304
Query: 225 KISGSLLNYLVDMY---------FKCGKIGEAQK----LLGRYEIDEVDVVLWTTLVSGY 271
+ L+ + I E+ + ++ D + TT++
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESS 362
Query: 272 VKSNERDEARRLFDEM--------VERNLIS--WTLMISG----MLNQDAEFKYKSCASI 317
+ E E R++FD + + L+S W +I ++N + S
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN---KLHKYSLVEK 419
Query: 318 GALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKN---VYLWTSVIAAYAMAGHAQKA 374
K++ ISI ++ E+ K L S++ Y + K
Sbjct: 420 QP-----------KESTISI------PSIYLELKVKLENEYALHRSIVDHYNI----PKT 458
Query: 375 IDLFLEMEETGTKP--DQ--VTFIAL-LSACSHGGLVDE------GYDFLSKKSRVYNIK 423
D + P DQ + I L H + + FL +K R +
Sbjct: 459 FDS-----DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR--HDS 511
Query: 424 PKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRAC-----RCHQNVKLAE 478
G +++ L + L+ +I + + L+ A + +N+ ++
Sbjct: 512 TAWNASGSILNTLQQ---LKFYKPYIC-----DNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 479 HAFKHLTETDPLNDGAHVLLAN----IYAKAGR 507
+ TD L + L I+ +A +
Sbjct: 564 Y-------TDLL----RIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 59/434 (13%), Positives = 135/434 (31%), Gaps = 122/434 (28%)
Query: 216 HLFLEESTMKIS-GSLLNYLVDMY---FKCGKIGEAQK-LLGRYEIDEVDVVLWTTLVSG 270
H+ E + +L+ D + F C + + K +L + EID +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI----------- 54
Query: 271 YVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF-------KYKSCASIGALY-- 321
+ + RLF ++ + + +L + +F + + + + +Y
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 322 --HGIW--VHVYIKKNQISIDNI-ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQK--- 373
++ V+ K N + +L L KNV + + G + K
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-------DGVLG-SGKTWV 166
Query: 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDE--------GYDFLSKKSRVYNIKPK 425
A+D+ L + ++ ++ L + S +++ ++ S+ NIK +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 426 MQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSS-LLRA----CR----------- 469
+ + L +S + + + +V ++ A C+
Sbjct: 227 IH------SIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 470 -----CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524
+H LT + + LL + + +D L
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKS-----LLLKY------------LDCRPQD--LP 319
Query: 525 KQ------LGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNE------IEMTLQQQGLQE 572
++ S+I + + + + +N IE +L L+
Sbjct: 320 REVLTTNPRRLSII--AESIRDG-------LATWDNWKHVNCDKLTTIIESSLNV--LEP 368
Query: 573 TSLQHR-ERLAVAF 585
+ +RL+V F
Sbjct: 369 AEYRKMFDRLSV-F 381
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 4e-08
Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 7/131 (5%)
Query: 335 ISIDNIELAYDLFSEISEK-------NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387
+ D + LA+ L + + ++ +V+ +A G ++ + + +++ G
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESAN 447
PD +++ A L + ++ +K + ++ RA L+
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 448 FITSMPIPPDV 458
+ +PP +
Sbjct: 258 VKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 6e-07
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 9/140 (6%)
Query: 180 LLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239
L SP E + L+ L++ + ++ + L
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 240 KCGKIGEAQKLLGRYE-----IDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVER---- 290
++ A LL + + + ++ ++ G+ + E + + +
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 291 NLISWTLMISGMLNQDAEFK 310
+L+S+ + M QD +
Sbjct: 199 DLLSYAAALQCMGRQDQDAG 218
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.5 bits (98), Expect = 4e-04
Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 139 KCGKLKEVCQLFDKLPNR-------DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP 191
+L L + + +N ++ + G ++E + +L + G++P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 192 DEVTMVSLISA 202
D ++ + +
Sbjct: 199 DLLSYAAALQC 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 645 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.39 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.25 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.22 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.21 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.19 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.11 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.1 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.98 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.96 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.92 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.92 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.89 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.8 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.71 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.62 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.61 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.57 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.56 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.55 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.54 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.53 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.5 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.41 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.37 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.37 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.37 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.28 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.28 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.27 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.26 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.26 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.26 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.25 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.22 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.22 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.21 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.21 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.2 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.19 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.19 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.18 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.17 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.16 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.16 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.13 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.09 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.05 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.04 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.99 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.96 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.93 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.93 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.92 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.92 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.9 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.88 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.87 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.85 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.84 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.83 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.73 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.71 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.68 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.67 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.67 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.66 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.65 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.65 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.5 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.39 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.29 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.23 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.12 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.04 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.93 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.86 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.74 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.62 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.1 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.95 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.58 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.49 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.82 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.73 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.61 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.18 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.74 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.45 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.08 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.7 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.05 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.91 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.78 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.37 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.29 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.66 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.68 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.49 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.71 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.34 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.03 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=335.15 Aligned_cols=413 Identities=11% Similarity=0.047 Sum_probs=348.7
Q ss_pred CChhhhhhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHHHHHHHHHcCChhHHHHHHHHHhh--cC--------chhh
Q 048812 71 RDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQLINGYPQEVFAIYLYLVT--RT--------VLLN 138 (645)
Q Consensus 71 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--------~~~~ 138 (645)
+++..++.++..|.+.|++++|..+|++|. .||..+|+.++.+|.+.|++++|+.+|+++.. .+ .+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 567788888888888888888888888875 56778888888888888888888888888843 22 7788
Q ss_pred ccCChHHHHHHHccCC-CC------------------CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHH
Q 048812 139 KCGKLKEVCQLFDKLP-NR------------------DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVS 198 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~-~~------------------~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 198 (645)
++|++++|.++|+++. .. ++.+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 239 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQ 239 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHH
Confidence 8999999999999543 33 47899999999999999999999999998864 432 23332
Q ss_pred H--------------------------------------HHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 048812 199 L--------------------------------------ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240 (645)
Q Consensus 199 l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 240 (645)
+ +..|.+.|++++|.+++..+.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 2 44556678888888888887765 5788888889999999
Q ss_pred cCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc---cCCchhHHHHHHhhhccCCchhhhhhcc
Q 048812 241 CGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLISWTLMISGMLNQDAEFKYKSCAS 316 (645)
Q Consensus 241 ~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~t~~~ll~~~~~~~~~~~~~a~~~ 316 (645)
.|++++|.++|+++....| +..+|+.++.+|.+.|++++|.++|+++. ..+..+|..+...|.+.|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 387 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN---------- 387 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT----------
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc----------
Confidence 9999999998888543333 67788889999999999999999998886 234667777777777766
Q ss_pred ccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048812 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393 (645)
Q Consensus 317 ~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 393 (645)
++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++
T Consensus 388 ----------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 444 (597)
T 2xpi_A 388 ----------------------KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPY 444 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHH
T ss_pred ----------------------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 8899999998764 3568899999999999999999999999999863 4478999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHH
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-------PIPPD--VSIWSSL 464 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd--~~~~~~l 464 (645)
..++.+|.+.|++++|.++|+++.+. ...+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 99999999999999999999999853 2336889999999999999999999999987 55787 7899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+.+|.+.|++++|.+.++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999997743
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=327.53 Aligned_cols=427 Identities=8% Similarity=0.002 Sum_probs=288.9
Q ss_pred ChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhC--CCCCcccHHHHHHHH
Q 048812 40 VSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQG--DEPEIKIWNSIIENQ 114 (645)
Q Consensus 40 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~ 114 (645)
+...+..+++.+ +++++|..++..+++. .|+..+++.+...|.+.|++++|..+|+++ .+++..+|+.++.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 444444444443 5555555555555533 244455555555555555555555555555 244555555555555
Q ss_pred HHcCChhHHHHHHHHHh-hc------------------C--------chhhccCChHHHHHHHccCCC--C-Ccch----
Q 048812 115 LINGYPQEVFAIYLYLV-TR------------------T--------VLLNKCGKLKEVCQLFDKLPN--R-DVIS---- 160 (645)
Q Consensus 115 ~~~g~~~~A~~~~~~m~-~~------------------~--------~~~~~~g~~~~A~~~f~~m~~--~-~~~~---- 160 (645)
.+.|++++|+.+|+++. .. + ..|.+.|++++|.++|++|.+ | +..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 55555555555555221 11 0 445555555555555555542 2 1112
Q ss_pred ----------------------------------HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcC
Q 048812 161 ----------------------------------WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206 (645)
Q Consensus 161 ----------------------------------~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (645)
|+.++..|.+.|++++|+++|++|.+. +++..++..++.++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 222234445556666666666666544 35666666666666666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFD 285 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 285 (645)
|++++|.+++..+.+.+ +.+..+++.++.+|.+.|++++|.++|+++....| +..+|+.++..|.+.|++++|.++|+
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66666666666666554 33555666666666666666666666665322222 45566666666666666666666666
Q ss_pred hcc--c-CCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cCChhHHH
Q 048812 286 EMV--E-RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EKNVYLWT 359 (645)
Q Consensus 286 ~m~--~-~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~~~~~ 359 (645)
++. . .+..+|+.+..+|.+.| ++++|.++|+++. ..+..+|+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g--------------------------------~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEG--------------------------------EHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHT--------------------------------CHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcC--------------------------------CHHHHHHHHHHHHHhCccchHHHH
Confidence 654 2 23445666665555554 5666666665543 34788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY---NIKPK--MQHYGCMVD 434 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~ 434 (645)
.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...|.+.|++++|.++|+++.+.. +..|+ ..+|..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 99999999999999999999999863 4478999999999999999999999999998532 66887 789999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|.+.++++++++|+++..+..|.++|..
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999987 3334 789999999999999999999999999999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=256.27 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=164.4
Q ss_pred HHHHHHccCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC---------hH
Q 048812 145 EVCQLFDKLPNR-----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD---------LE 210 (645)
Q Consensus 145 ~A~~~f~~m~~~-----~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~ 210 (645)
.+..+++++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555555432 2345888999999999999999999999999999999999999999987654 57
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID--EVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|... .||..+||+||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999986443 5788888888888888888888888888887
Q ss_pred cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 289 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
+.+. .||..+|++||.+|++.
T Consensus 168 ~~G~-----------------------------------------------------------~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 168 ESEV-----------------------------------------------------------VPEEPELAALLKVSMDT 188 (501)
T ss_dssp HTTC-----------------------------------------------------------CCCHHHHHHHHHHHHHT
T ss_pred hcCC-----------------------------------------------------------CCCHHHHHHHHHHHhhC
Confidence 6664 58888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 404 (645)
|+.++|.++|++|++.|..|+..||+.++..|+..+
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 888888888888888888888888888888877643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-28 Score=256.20 Aligned_cols=205 Identities=13% Similarity=0.120 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCC---------H
Q 048812 175 REGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK---------I 244 (645)
Q Consensus 175 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 244 (645)
..+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||++|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 45666778888888776554 6889999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHcccCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 245 GEAQKLLGRYEID--EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 245 ~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
+.|.++|++|... .||.+|||+||.+|++.|++++|.++|++|.+.+.
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------------------------ 136 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------------------------ 136 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------------------
Confidence 8999999997543 58999999999999999999999999999987665
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 402 (645)
.||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|++
T Consensus 137 -----------------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 137 -----------------------------QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp -----------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred -----------------------------CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 439 (645)
.|++++|.++|++|. +.|+.|+..+|+.+++.|...
T Consensus 188 ~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999 679999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-24 Score=225.79 Aligned_cols=368 Identities=14% Similarity=0.079 Sum_probs=277.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
|++++|.+.+..+.+.. +.++..+..+...+...|++++|...++... +.+..+|+.+...|.+.|++++|+..|+
T Consensus 13 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777877777777664 3445566666777777888888887776543 4456677778887777777777777766
Q ss_pred HHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCC
Q 048812 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLR 207 (645)
Q Consensus 129 ~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~ 207 (645)
++.. ....+..+|+.+..+|.+.|++++|++.|+++.+. .|+.. .+..+...+...|
T Consensus 92 ~al~--------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 92 HALR--------------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHH--------------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTS
T ss_pred HHHH--------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcc
Confidence 6532 01124456778888888888888888888887765 34433 5556666777778
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 208 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
++++|.+.+..+++.. +.+..+++.+...|.+.|++++|...|+++....| +...|..+...+...|++++|+..|++
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888877764 44567777788888888888888888877433344 456677777778888888888777766
Q ss_pred cccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHH
Q 048812 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366 (645)
Q Consensus 287 m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~ 366 (645)
....+ +.+..+|+.+...|.
T Consensus 229 al~~~------------------------------------------------------------p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 229 ALSLS------------------------------------------------------------PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHC------------------------------------------------------------TTCHHHHHHHHHHHH
T ss_pred HHhhC------------------------------------------------------------cCCHHHHHHHHHHHH
Confidence 54221 235677888899999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 445 (645)
..|++++|++.|+++.+. .| +..++..+..++...|++++|.+.|+++.+. .+++...+..+...+.+.|++++|
T Consensus 249 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999885 34 4678888889999999999999999998853 234678889999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 446 ANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 446 ~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..|..+..+|...|+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999886 4444 577889999999999999999999999999999998999988888877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-24 Score=226.09 Aligned_cols=354 Identities=15% Similarity=0.107 Sum_probs=301.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCC
Q 048812 79 VFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155 (645)
Q Consensus 79 ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~ 155 (645)
+...+.+.|++++|.+.|+++. +.+...+..+...+.+.|++++|...++.... ...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--------------------~~p 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--------------------QNP 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------HCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------cCC
Confidence 4566778999999999998764 33455677777777777777777666655431 123
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 234 (645)
.+..+|+.+...|.+.|++++|++.|+++.+. .|+ ..+|..+..++...|++++|.+.+..+++.. +.+...+..+
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 141 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL 141 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 46788999999999999999999999999875 454 4579999999999999999999999999875 4456678888
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhh
Q 048812 235 VDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313 (645)
Q Consensus 235 i~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a 313 (645)
...|...|++++|.+.|+++....| +..+|+.+...+.+.|++++|...|+++.+.+
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------- 199 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---------------------- 199 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------
Confidence 9999999999999999998544455 67899999999999999999999998876432
Q ss_pred hccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHH
Q 048812 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVT 392 (645)
Q Consensus 314 ~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t 392 (645)
+.+...|..+...+...|++++|+..|++.... .| +..+
T Consensus 200 --------------------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 200 --------------------------------------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp --------------------------------------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred --------------------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 234567888899999999999999999999875 45 4788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 048812 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACR 469 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~ 469 (645)
+..+..++...|++++|.+.|+++.+ +.|+ ...|..+...|.+.|++++|.+.++++ ..+++..+|..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 99999999999999999999999985 4564 788999999999999999999999987 23457889999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999976
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=207.43 Aligned_cols=306 Identities=10% Similarity=0.055 Sum_probs=243.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
+...|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56678888888888888888888888887652 3456778888888888888888888888888876 556778888888
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCC-h---hhHHHHHH------------HHHhcCCHHHHHHHHHhccc--C-CchhHHH
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVD-V---VLWTTLVS------------GYVKSNERDEARRLFDEMVE--R-NLISWTL 297 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~-~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~--~-~~~t~~~ 297 (645)
+|.+.|++++|.+.|+++....|+ . ..|..++. .+.+.|++++|+..|+++.+ | +...+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 888888888888888885444553 3 56665543 37888888888888888762 2 3445555
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cCChhHHHHHHHHHHHcCCHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKA 374 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 374 (645)
+...|.+.| ++++|...|+.+. ..+..+|+.+...|...|++++|
T Consensus 183 l~~~~~~~g--------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 183 RAECFIKEG--------------------------------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHHHTT--------------------------------CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCC--------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 555555444 5566666666553 35788999999999999999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHH
Q 048812 375 IDLFLEMEETGTKPD-QVTFIAL------------LSACSHGGLVDEGYDFLSKKSRVYNIKPK-----MQHYGCMVDLL 436 (645)
Q Consensus 375 ~~l~~~m~~~g~~pd-~~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~ 436 (645)
+..|+++... .|+ ...+..+ ..+|.+.|++++|.++|+++.+ +.|+ ..+|..+..++
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHH
Confidence 9999999875 455 3444333 7889999999999999999986 3454 56899999999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 437 GRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..+..+
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999986 4344 688999999999999999999999999999999999999988843
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-21 Score=205.34 Aligned_cols=166 Identities=12% Similarity=0.100 Sum_probs=145.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 431 (645)
.+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|..+++.+.+. .| +...+..
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 377 (514)
T 2gw1_A 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNF 377 (514)
T ss_dssp TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHH
Confidence 456788899999999999999999999998853 235678888999999999999999999999853 34 5678899
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 432 MVDLLGRAGHLEESANFITSM----PIPPD----VSIWSSLLRACRC---HQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m----~~~pd----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
+...|.+.|++++|.+.++++ +..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 457 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQ 457 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 999999999999999999886 22233 4489999999999 999999999999999999999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHhCC
Q 048812 501 IYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 501 ~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|...|++++|...+++..+.+
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999999999987643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-21 Score=200.81 Aligned_cols=363 Identities=11% Similarity=0.012 Sum_probs=279.1
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHH
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A 146 (645)
+.++..+..+...|.+.|++++|..+|+++. +.+..+|..+...|...|++++|+..|+++...
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 89 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL------------- 89 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------
Confidence 4467788999999999999999999999865 456888999999999999888888888877531
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh----hhHHHH------------HHHHhcCCChH
Q 048812 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE----VTMVSL------------ISARTKLRDLE 210 (645)
Q Consensus 147 ~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~ 210 (645)
...+..+|..+...|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|+++
T Consensus 90 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 90 -------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 1235678999999999999999999999999876 4443 445444 34488899999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcc-
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID-EVDVVLWTTLVSGYVKSNERDEARRLFDEMV- 288 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 288 (645)
.|.+.+..+++.. +.+..++..+..+|.+.|++++|.+.|+++... ..+..+|..+...|...|++++|+..|+++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999876 567889999999999999999999999984333 3478899999999999999999999999987
Q ss_pred -cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHH
Q 048812 289 -ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367 (645)
Q Consensus 289 -~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 367 (645)
.|+.......+... .....+..+...|..
T Consensus 240 ~~p~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQV--------------------------------------------------KKLNKLIESAEELIR 269 (450)
T ss_dssp HCTTCHHHHHHHHHH--------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHH--------------------------------------------------HHHHHHHHHHHHHHH
Confidence 33332211111000 011233455888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCC
Q 048812 368 AGHAQKAIDLFLEMEETGTKPD-----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 441 (645)
.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++++.+. .| +...|..+..+|...|+
T Consensus 270 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcC
Confidence 99999999999999884 455 347788888999999999999999998853 45 57899999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----ChHHHHHHHHH-HHhcCCCCch--------
Q 048812 442 LEESANFITSM-PIPPD-VSIWSSLLRA------------CRCHQ-----NVKLAEHAFKH-LTETDPLNDG-------- 493 (645)
Q Consensus 442 ~~~A~~~~~~m-~~~pd-~~~~~~ll~a------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~-------- 493 (645)
+++|.+.++++ ...|+ ..++..+..+ |...| +.+++.+.+++ .++..|++..
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a 424 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHH
Confidence 99999999987 55564 5566666533 33334 66778888887 6777776421
Q ss_pred --hHHHHHHHHHHcCCchH
Q 048812 494 --AHVLLANIYAKAGRLDD 510 (645)
Q Consensus 494 --~y~~l~~~~~~~g~~~~ 510 (645)
.+..+..+|...|+.+.
T Consensus 425 ~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 425 EKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHhCCHHH
Confidence 34455566665555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=195.92 Aligned_cols=383 Identities=10% Similarity=-0.016 Sum_probs=289.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHH
Q 048812 51 CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIY 127 (645)
Q Consensus 51 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 127 (645)
.+++++|...+..+++.. |++.++..+...|.+.|++++|...|+++. +.+..+|..+..+|.+.|++++|+..|
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 389999999999999986 689999999999999999999999999865 445678999999999999999999999
Q ss_pred HHHhhcCc--------hhh---ccCChH--------------------------------------HHHHHHccCCC---
Q 048812 128 LYLVTRTV--------LLN---KCGKLK--------------------------------------EVCQLFDKLPN--- 155 (645)
Q Consensus 128 ~~m~~~~~--------~~~---~~g~~~--------------------------------------~A~~~f~~m~~--- 155 (645)
+++...+. .+. +..... .+...+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 99876430 000 000000 00111111100
Q ss_pred ------C-CcchHHHHHHHHHh---cCChHHHHHHHHHHhh-----CCCCC--------ChhhHHHHHHHHhcCCChHHH
Q 048812 156 ------R-DVISWNTMISCYTS---MGMYREGLGLLSKMGA-----EGVSP--------DEVTMVSLISARTKLRDLEMG 212 (645)
Q Consensus 156 ------~-~~~~~n~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~~~~~~~~~~~a 212 (645)
| +...|..+...+.. .|++++|+.+|+++.+ ..-.| +..++..+...+...|+++.|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 1 13334444444443 7888888888888876 31122 234566677778888888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 048812 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291 (645)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 291 (645)
...+..+++.... ..++..+...|...|++++|...|+......| +..+|..+...|...|++++|...|++..+.+
T Consensus 257 ~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 257 HEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 8888888877533 77777888888888888888888877433333 66778888888888888888888887765332
Q ss_pred chhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCH
Q 048812 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371 (645)
Q Consensus 292 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 371 (645)
..+...|..+...|...|++
T Consensus 335 ------------------------------------------------------------~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 335 ------------------------------------------------------------PENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp ------------------------------------------------------------SSCSHHHHHHHHHTTTTTCH
T ss_pred ------------------------------------------------------------hhhHHHHHHHHHHHHHcCCH
Confidence 23556788889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHH---cCCHHH
Q 048812 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCMVDLLGR---AGHLEE 444 (645)
Q Consensus 372 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~ 444 (645)
++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+...-.|+ ...+..+...|.+ .|++++
T Consensus 355 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 355 DDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 99999999998752 335678888899999999999999999998854333333 4488999999999 999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 445 SANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 445 A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
|.+.++++ ... .+..+|..+...+...|++++|...++++++++|.++..+..+
T Consensus 434 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999886 233 3677899999999999999999999999999999987776655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-20 Score=198.14 Aligned_cols=403 Identities=12% Similarity=0.071 Sum_probs=242.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
+++++|...+..+++.. +.++.++..+...|.+.|++++|.+.|++.. +.+..+|..+...+...|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66667777777776665 3456666677777777777777777776653 3345566666666666666666666664
Q ss_pred HHhhcC-------chhhccCChHHHHHHHccCCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhh
Q 048812 129 YLVTRT-------VLLNKCGKLKEVCQLFDKLPN------RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195 (645)
Q Consensus 129 ~m~~~~-------~~~~~~g~~~~A~~~f~~m~~------~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 195 (645)
.+.... ..+...+....|...++.+.. +.....+..+..+....+.+.++..+...... .|....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 195 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYAL 195 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHH
Confidence 221110 122222333444444444322 11112222333333344443333333222211 111111
Q ss_pred HH-HHHHHHhcC--------CChHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC
Q 048812 196 MV-SLISARTKL--------RDLEMGKNLHLFLEESTMKIS-------GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259 (645)
Q Consensus 196 ~~-~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~~~-------~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 259 (645)
+. .+...+... ++++.|..++..+++.. +.+ ..++..+...|...|++++|...|+......|
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~ 274 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP 274 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 11 111111111 24444555555544432 111 11233344444555555555555554322333
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+..+|..+...+...|++++|.+.|+++.+.+
T Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------------------ 306 (537)
T 3fp2_A 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLN------------------------------------------------ 306 (537)
T ss_dssp CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC------------------------------------------------
T ss_pred CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC------------------------------------------------
Confidence 44445555555555555555555554433211
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
..+..+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|.++++++.+.
T Consensus 307 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 307 ------------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2456778889999999999999999999998753 224678888889999999999999999998853
Q ss_pred cCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHhc----------CChHHHHHH
Q 048812 420 YNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM----PIP----PDVSIWSSLLRACRCH----------QNVKLAEHA 480 (645)
Q Consensus 420 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~----pd~~~~~~ll~a~~~~----------g~~~~a~~~ 480 (645)
.| +...+..+...|.+.|++++|.+.++++ +.. .....+..+...+... |++++|...
T Consensus 374 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 374 ---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred ---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 34 4678888999999999999999999886 111 1223344555667777 999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999987644
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-18 Score=174.00 Aligned_cols=299 Identities=11% Similarity=0.027 Sum_probs=242.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888899999999999999999998763 3356788888889999999999999999999875 556788899999
Q ss_pred HHHHcCCHHHHHHHHcccCCCCC----ChhhHHHH------------HHHHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEV----DVVLWTTL------------VSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
.|.+.|++++|...|++.....| +...|..+ ...+...|++++|++.|+++.+.+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------- 150 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--------- 150 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------
Confidence 99999999999999998544455 34445544 567788888888888887765322
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 380 (645)
+.+...|..+...|...|++++|+..|++
T Consensus 151 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 151 ---------------------------------------------------VWDAELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp ---------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23556788888999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHH------------HHHHHHHHcCCHHHHHH
Q 048812 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYG------------CMVDLLGRAGHLEESAN 447 (645)
Q Consensus 381 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~ 447 (645)
..+. .+.+..++..+...+...|++++|.+.|+...+. .|+ ...+. .+...+.+.|++++|.+
T Consensus 180 ~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 255 (359)
T 3ieg_A 180 ASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 255 (359)
T ss_dssp HHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9875 2346788888999999999999999999998853 343 22222 33667899999999999
Q ss_pred HHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 448 FITSM-PIPPD-V----SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 448 ~~~~m-~~~pd-~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+++. ...|+ . ..+..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 256 KYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99886 33343 3 235567788999999999999999999999999999999999999999999999999998763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-18 Score=187.08 Aligned_cols=392 Identities=9% Similarity=-0.014 Sum_probs=294.3
Q ss_pred CCChhhHHHHHhhc----CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHH
Q 048812 38 CPVSLDVIMVERSC----SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113 (645)
Q Consensus 38 ~p~~~~~~~~l~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 113 (645)
.|+.......+..| +++++|.+.+..+++.. +.++..+..+...|...|++++|...|+.+. .+....+..+..
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 132 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEP 132 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------C
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHH
Confidence 45544433333333 99999999999999887 5578889999999999999999999997543 222233344556
Q ss_pred HHHcCChhHHHHHHHHHhhcC--------------chhhccCChHHHHHHHccCCCCCcc---hHHHHHHHHHhc-----
Q 048812 114 QLINGYPQEVFAIYLYLVTRT--------------VLLNKCGKLKEVCQLFDKLPNRDVI---SWNTMISCYTSM----- 171 (645)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~g~~~~A~~~f~~m~~~~~~---~~n~li~~~~~~----- 171 (645)
+...+...+|+..++++.... ..|....+.+.+...+......+.. .+..+...+...
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence 667777889999999987642 3444566777777777777655443 344444333332
Q ss_pred ---CChHHHHHHHHHHhhCCCCCC--------hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 048812 172 ---GMYREGLGLLSKMGAEGVSPD--------EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240 (645)
Q Consensus 172 ---g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 240 (645)
|++++|+.+|+++.+. .|+ ..++..+...+...|+++.|.+.+..+++.. |+..++..+...|..
T Consensus 213 ~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 4789999999999876 344 2246666677888999999999999999875 457888899999999
Q ss_pred cCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccc
Q 048812 241 CGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 241 ~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
.|++++|...|++.....| +..+|..+...+...|++++|...|++..+.+
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------- 340 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---------------------------- 340 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------
Confidence 9999999999998433334 67889999999999999999999998875422
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 399 (645)
..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 341 --------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 341 --------------------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp --------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred --------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 2345678889999999999999999999998863 3346788888999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHHc----------CCHHHHHHHHHhC-CCC-CCHHHHHH
Q 048812 400 CSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRA----------GHLEESANFITSM-PIP-PDVSIWSS 463 (645)
Q Consensus 400 ~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~-pd~~~~~~ 463 (645)
+...|++++|.+.|+++.+...-.+ ....+..+...|.+. |++++|...+++. ... .+..+|..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999875322122 123355566778888 9999999999987 333 46788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
+...+...|++++|...+++++++.|.++....
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999998866544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-17 Score=168.20 Aligned_cols=317 Identities=12% Similarity=0.054 Sum_probs=249.9
Q ss_pred cccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048812 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183 (645)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~ 183 (645)
+..|..+...+...|++++|+..|+++... ...+..+|..+...|...|++++|+..|++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------------------DPDNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 445677777787777777777777765421 123567888899999999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC---CchhHHHHH------------HHHHHHcCCHHHHH
Q 048812 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK---ISGSLLNYL------------VDMYFKCGKIGEAQ 248 (645)
Q Consensus 184 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------i~~y~~~g~~~~A~ 248 (645)
+.+.. +-+...+..+...+...|++++|.+.+..+.+.. + .+...+..+ ...|...|++++|.
T Consensus 63 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 63 VIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 88763 2255688888889999999999999999998764 3 345555544 58899999999999
Q ss_pred HHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHH
Q 048812 249 KLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327 (645)
Q Consensus 249 ~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~ 327 (645)
+.|+++....| +...|..+...+...|++++|...|+++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------ 184 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK------------------------------------ 184 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------
Confidence 99998533344 67889999999999999999999998876433
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH------------
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFI------------ 394 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~------------ 394 (645)
+.+..+|..+...|...|++++|+..|++..+. .|+ ..++.
T Consensus 185 ------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 185 ------------------------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp ------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHH
Confidence 235677888999999999999999999999875 333 33332
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM--QHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRC 470 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~ 470 (645)
.+...+...|++++|...++++.+...-.|.. ..+..+...+...|++++|.+.+++. ...| +..+|..+...+..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 23566889999999999999998643221111 34566889999999999999999987 3334 78899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 471 ~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
.|++++|...++++++++|+++..+..|..++..
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999998888887777654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-17 Score=163.53 Aligned_cols=290 Identities=10% Similarity=0.011 Sum_probs=242.1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 235 (645)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 567778889999999999999999999998763 3345567778888899999999999999999875 55778899999
Q ss_pred HHHHHcC-CHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhh
Q 048812 236 DMYFKCG-KIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313 (645)
Q Consensus 236 ~~y~~~g-~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a 313 (645)
..|...| ++++|...|++.....| +...|..+...+...|++++|++.|+++.+.+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------- 155 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---------------------- 155 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----------------------
Confidence 9999999 99999999998544444 67889999999999999999999998775322
Q ss_pred hccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048812 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393 (645)
Q Consensus 314 ~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 393 (645)
+.+...|..+...|...|++++|+..|++..+.. +.+..++
T Consensus 156 --------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 196 (330)
T 3hym_B 156 --------------------------------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVM 196 (330)
T ss_dssp --------------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHH
T ss_pred --------------------------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHH
Confidence 1244567778889999999999999999998752 3457888
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHH
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYN-------IKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSL 464 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~l 464 (645)
..+...+...|++++|..+++++.+... .......+..+...|.+.|++++|.+.+++. ... .+..+|..+
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 276 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHH
Confidence 8999999999999999999999885321 1334678999999999999999999999886 223 367789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHcCCc
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY-AKAGRL 508 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~-~~~g~~ 508 (645)
...+...|++++|...++++++++|+++..+..+..++ ...|+.
T Consensus 277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 277 GYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999999999999999999988 455554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=179.67 Aligned_cols=283 Identities=12% Similarity=0.134 Sum_probs=134.0
Q ss_pred hccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 048812 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217 (645)
Q Consensus 138 ~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (645)
.++|++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46799999999999997765 9999999999999999999999753 577899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHH
Q 048812 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297 (645)
Q Consensus 218 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ 297 (645)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT----------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------
Confidence 77774 55688899999999999999999988864 67779999999999999999999999865
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
..|..++.++.+.|++++|++.
T Consensus 149 ----------------------------------------------------------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 149 ----------------------------------------------------------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred ----------------------------------------------------------hhHHHHHHHHHHhccHHHHHHH
Confidence 1378888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 048812 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP 456 (645)
Q Consensus 378 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 456 (645)
++++ .+..||..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++.. +..+
T Consensus 171 ~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 171 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp HHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred HHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 9888 2788999999999999999999554332 3344555667889999999999999888875 5443
Q ss_pred -CHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 457 -DVSIWSSLLRACRCH--QNVKLAEHAFKHLTETDP-----LNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 457 -d~~~~~~ll~a~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
...+|.-|.-++++. +++.+.+++|..-+.+.| .++..|.-++..|...++|+.|....
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 456777776666665 456666666665555666 67788889999999999999888743
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-17 Score=167.84 Aligned_cols=297 Identities=12% Similarity=-0.004 Sum_probs=200.1
Q ss_pred cCChHHHHH-HHHHHhhCCC-CC--ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH
Q 048812 171 MGMYREGLG-LLSKMGAEGV-SP--DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246 (645)
Q Consensus 171 ~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 246 (645)
.|++++|++ .|++...... .| +...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666666 5554443211 01 23445556666666666666666666666554 4455666666777777777777
Q ss_pred HHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHH
Q 048812 247 AQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325 (645)
Q Consensus 247 A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~ 325 (645)
|...|++.....| +..+|..+...|...|++++|++.|+++...+..... .....+..
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~~~----- 175 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH----------------LVTPAEEG----- 175 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG----------------GCC----------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH----------------HHHHHHHH-----
Confidence 7777765322233 5667777777777777777777777776532211000 00000000
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 048812 326 VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGG 404 (645)
Q Consensus 326 i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g 404 (645)
.. . ......+..+...+ ..|++++|+..|+++.+..... +..++..+...+...|
T Consensus 176 ---------------~~-------~-~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 176 ---------------AG-------G-AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp ---------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred ---------------hh-------h-hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 00 0 00011122233333 8899999999999998853221 4788999999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 048812 405 LVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAF 481 (645)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~ 481 (645)
++++|...|+++.+. .| +...|..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+
T Consensus 232 ~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 232 EYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998853 45 4788999999999999999999999986 3334 6789999999999999999999999
Q ss_pred HHHHhcCCCC-----------chhHHHHHHHHHHcCCchHHHHHHH
Q 048812 482 KHLTETDPLN-----------DGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 482 ~~~~~~~p~~-----------~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
++++++.|.+ +.+|..++.+|...|++++|..+++
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999988877 7889999999999999999999875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=161.07 Aligned_cols=267 Identities=13% Similarity=0.098 Sum_probs=226.5
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHH
Q 048812 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTL 267 (645)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~l 267 (645)
.+.+...+..+...+...|++++|.+++..+.+.. +.+...+..++..+.+.|++++|...|+++....| +...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 35566778888888888999999999999999876 55666777788889999999999999988544444 67889999
Q ss_pred HHHHHhcC-CHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHH
Q 048812 268 VSGYVKSN-ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346 (645)
Q Consensus 268 i~~~~~~g-~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~ 346 (645)
...+...| ++++|.+.|++..+.+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~------------------------------------------------------- 121 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE------------------------------------------------------- 121 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-------------------------------------------------------
Confidence 99999999 9999999998876433
Q ss_pred HhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-C
Q 048812 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-K 425 (645)
Q Consensus 347 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~ 425 (645)
+.+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|.++++++.+ +.| +
T Consensus 122 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~ 192 (330)
T 3hym_B 122 -----KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS---IAPED 192 (330)
T ss_dssp -----TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTC
T ss_pred -----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCCCC
Confidence 2356678899999999999999999999999863 23456777788999999999999999999884 345 4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-P----------IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~----------~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
...+..+...|.+.|++++|.+.+++. . .+.+..+|..+...+...|++++|...++++++..|.++..
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 272 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHH
Confidence 788999999999999999999999876 1 13346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+..++.+|...|++++|.+.+++..+
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999987754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=167.70 Aligned_cols=321 Identities=17% Similarity=0.169 Sum_probs=128.8
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHH
Q 048812 85 FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164 (645)
Q Consensus 85 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~l 164 (645)
+.|++++|.+.++++.+|+ +|..++.++.+.|++++|++.|.+ . +|...|..+
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-----------------------a--~D~~~y~~V 67 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-----------------------A--DDPSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-----------------------C--CCHHHHHHH
Confidence 5677778888887776554 677777777665555444444432 1 355566666
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
+.++.+.|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.+++. .|+..+|+.+.+.|...|.+
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT-------CC----------------CT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCH
Confidence 66666666666666655544443 3445566666666666666666665552 24555666666666666777
Q ss_pred HHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHH
Q 048812 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324 (645)
Q Consensus 245 ~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~ 324 (645)
++|...|.. . ..|..|+.++.+.|++++|.+.++++ .++.+|..++.+++..|
T Consensus 139 eeA~~~Y~~--a-----~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~------------------ 191 (449)
T 1b89_A 139 DAAKLLYNN--V-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK------------------ 191 (449)
T ss_dssp TTHHHHHHH--T-----TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHH--h-----hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcC------------------
Confidence 777666666 2 35666666777777777776666666 25566666664444333
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhc
Q 048812 325 WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF--IALLSACSH 402 (645)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~ 402 (645)
+++.|......+. ........++..|.+.|++++|+.+++...... +-....| ..++.+-.+
T Consensus 192 --------------ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 192 --------------EFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 255 (449)
T ss_dssp --------------CHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred --------------cHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC
Confidence 3333433333222 222334468899999999999999999987543 2234444 444555555
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKP------KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~ 476 (645)
.+++.+..+.|.. .-++.| +..+|..++-.|...++++.|...+-+-+ |+..--........+..+.|.
T Consensus 256 p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~el 330 (449)
T 1b89_A 256 PQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVEL 330 (449)
T ss_dssp HHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHH
Confidence 6677777776653 334555 46789999999999999999988766553 232222333344455566555
Q ss_pred HHHHHHHHHhcCC
Q 048812 477 AEHAFKHLTETDP 489 (645)
Q Consensus 477 a~~~~~~~~~~~p 489 (645)
--++..--++..|
T Consensus 331 yYkai~fyl~~~p 343 (449)
T 1b89_A 331 YYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHHHHHCG
T ss_pred HHHHHHHHHhcCH
Confidence 5555544444444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-15 Score=160.18 Aligned_cols=175 Identities=7% Similarity=0.018 Sum_probs=140.1
Q ss_pred HHHHHHhhcCc----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHH
Q 048812 342 LAYDLFSEISE----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ--VTFIALLSACSHGGLVDEGYDFLSK 415 (645)
Q Consensus 342 ~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~ 415 (645)
+|..+|++... .+...|..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66666665442 35788999999999999999999999999984 5652 4788888888899999999999999
Q ss_pred hHHhcCCCCC-hHHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 416 KSRVYNIKPK-MQHYGCMVDL-LGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 416 ~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..+. .|. ...|.....+ +...|+.++|.++|++. ...| +...|..++..+...|+.++|..+|++++...|.+
T Consensus 382 Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 382 ARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 8853 343 3333333222 34689999999999976 3334 67899999999999999999999999999988766
Q ss_pred ch----hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 492 DG----AHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 492 ~~----~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+. .|...+......|+.+.+..+.+++.+.
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55 7777788888999999999999988663
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-14 Score=159.07 Aligned_cols=404 Identities=14% Similarity=0.157 Sum_probs=284.5
Q ss_pred cCCChhhHHHHHh-hcCCHHHHHHHHHHHHHhC--CCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHH
Q 048812 37 VCPVSLDVIMVER-SCSSIDEFERIHSHLITTN--LMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113 (645)
Q Consensus 37 ~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 113 (645)
..|+..++..-.- ..+.+.++..+++.++-.+ +.-+....+.|+....+. +..+.....++...-+ ...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 4566665533222 2388999999999888332 123456777777777776 4555555555544333 5567888
Q ss_pred HHHcCChhHHHHHHHHHhhcC----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 114 QLINGYPQEVFAIYLYLVTRT----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
+...|.+++|.++|++....+ .++...+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 899999999999999986433 34558899999999998874 4677999999999999999999999664
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
-|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++..... ..++...|..+..
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-----~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-----NGPNNAHIQQVGD 1203 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-----hCCCHHHHHHHHH
Confidence 367789999999999999999999999888764 45555566999999999999655543 3456778888999
Q ss_pred HHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhh
Q 048812 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349 (645)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~ 349 (645)
.|...|++++|..+|... ..|..+...|++.| +++.|.+.+.+
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLg--------------------------------e~q~AIEaarK 1246 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG--------------------------------EYQAAVDGARK 1246 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhC--------------------------------CHHHHHHHHHH
Confidence 999999999999999985 36777777777766 67777777776
Q ss_pred cCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHH
Q 048812 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQH 428 (645)
Q Consensus 350 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 428 (645)
. .+..+|..+-.+|...|++..|...... +..+...+..++..|...|.+++|+.+++... ++.| ....
T Consensus 1247 A--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gm 1316 (1630)
T 1xi4_A 1247 A--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGM 1316 (1630)
T ss_pred h--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHH
Confidence 5 4567777777777777777777665543 22345555677777777778887777776554 3443 2445
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh------------c
Q 048812 429 YGCMVDLLGRA--GHLEESANFITS-MPIPP------DVSIWSSLLRACRCHQNVKLAEHAFKHLTE------------T 487 (645)
Q Consensus 429 ~~~li~~~~~~--g~~~~A~~~~~~-m~~~p------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~------------~ 487 (645)
|+-|..+|++. +++.++.++|.+ +.++| +...|.-+.--|.+.|+++.|....-+-.. .
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 55555555543 455555555544 33333 455677777777777777777622211111 1
Q ss_pred CCCCchhHHHHHHHHHHcC
Q 048812 488 DPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 488 ~p~~~~~y~~l~~~~~~~g 506 (645)
.+.++..|.-.++.|...+
T Consensus 1397 kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccccHHHHHHHHHHHHhhC
Confidence 3556666666666666555
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-14 Score=153.45 Aligned_cols=368 Identities=13% Similarity=0.020 Sum_probs=267.9
Q ss_pred ChhhhhhHHHHHHh----cCChHHHHHHHhhCC-CCCcccHHHHHHHHHH----cCChhHHHHHHHHHhhcCchhhccCC
Q 048812 72 DPQISTQVFEFLVF----TGDLGYAQQIIRQGD-EPEIKIWNSIIENQLI----NGYPQEVFAIYLYLVTRTVLLNKCGK 142 (645)
Q Consensus 72 ~~~~~~~ll~~~~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~g~ 142 (645)
++.....|-..|.. .++++.|...|++.. ..+..++..+...|.. .+++++|+..|++...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------- 107 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL---------- 107 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------
Confidence 67777778888887 899999999998754 3466778888888877 6777777777766532
Q ss_pred hHHHHHHHccCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc----CCChHHHHH
Q 048812 143 LKEVCQLFDKLPNRDVISWNTMISCYTS----MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK----LRDLEMGKN 214 (645)
Q Consensus 143 ~~~A~~~f~~m~~~~~~~~n~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~ 214 (645)
..+..++..|...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.+
T Consensus 108 ------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 108 ------------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp ------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 1245566667777777 678888888888887765 45556666666655 678888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHH----cCCHHHHHHHHcccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHh
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFK----CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK----SNERDEARRLFDE 286 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 286 (645)
.+....+.| +...+..|..+|.. .++.++|.+.|++.. ...+..++..+...|.. .+++++|.++|++
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA-TSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 888887765 56677777788877 788888888887631 12356677777777776 7788888888888
Q ss_pred cccCCchh-HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcC-CCCCcHHHHHHHHhhcCc-CChhHHHHHHH
Q 048812 287 MVERNLIS-WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ-ISIDNIELAYDLFSEISE-KNVYLWTSVIA 363 (645)
Q Consensus 287 m~~~~~~t-~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~-~~~~~~~~A~~~f~~~~~-~~~~~~~~li~ 363 (645)
..+.+... +..+- .+...| ....+.++|...|+...+ .+...+..+..
T Consensus 249 a~~~~~~~a~~~lg-----------------------------~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 299 (490)
T 2xm6_A 249 SAEQGNSIAQFRLG-----------------------------YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAH 299 (490)
T ss_dssp HHTTTCHHHHHHHH-----------------------------HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHH-----------------------------HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76544321 11111 111111 123467788888876654 45677788888
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 364 AYAMA-----GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG---LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 364 ~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
.|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|..+
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHH
Confidence 88887 89999999999998865 4456666666676656 889999999998852 467888899999
Q ss_pred HHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHH
Q 048812 436 LGR----AGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPL---NDGAHVLLANIYAK 504 (645)
Q Consensus 436 ~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~---~~~~y~~l~~~~~~ 504 (645)
|.. .+++++|.+.+++.-...+...+..|...|.. .+|.++|...|+++.+.+|+ ++.....|..++..
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 998 89999999999987333467888889888888 89999999999999999854 55555555555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-16 Score=159.13 Aligned_cols=284 Identities=13% Similarity=0.025 Sum_probs=219.1
Q ss_pred ccCChHHHHH-HHccCCC-------CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChH
Q 048812 139 KCGKLKEVCQ-LFDKLPN-------RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210 (645)
Q Consensus 139 ~~g~~~~A~~-~f~~m~~-------~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (645)
-.|++++|.. .|++... .+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 4466777776 6664432 246779999999999999999999999999874 346678889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC-hhhHHH---------------HHHHHHhc
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTT---------------LVSGYVKS 274 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~---------------li~~~~~~ 274 (645)
.|...+..+++.. +.+..++..+...|...|++++|.+.|+++....|+ ...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 9999999999886 567889999999999999999999999985433442 222221 12333366
Q ss_pred CCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCC
Q 048812 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKN 354 (645)
Q Consensus 275 g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~ 354 (645)
|++++|+..|+++.+.+.. .++
T Consensus 195 ~~~~~A~~~~~~a~~~~p~----------------------------------------------------------~~~ 216 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPT----------------------------------------------------------SID 216 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTT----------------------------------------------------------SCC
T ss_pred ccHHHHHHHHHHHHHhCcC----------------------------------------------------------ccc
Confidence 7777777777665432110 115
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMV 433 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 433 (645)
..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++|.+.|+++.+. .| +...+..+.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~ 292 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHH
Confidence 6788899999999999999999999998862 335788999999999999999999999998853 45 478899999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP------------DVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p------------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
.+|.+.|++++|.+.+++. ...| ...+|..+..++...|+.++|..++++.++
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999999886 1112 268999999999999999999999886654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=163.20 Aligned_cols=270 Identities=13% Similarity=0.025 Sum_probs=194.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHH
Q 048812 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYV 272 (645)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~ 272 (645)
..+..+...+...|++++|.+.+..+++.. +.+..++..+..+|.+.|++++|...|++.....| +..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666666666666666666666654 44566677777777777777777777776433333 5677888888888
Q ss_pred hcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc
Q 048812 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352 (645)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~ 352 (645)
..|++++|+..|+++.+.+........ .. .
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~~----------------------------------~ 174 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVK----------------NK----------------------------------K 174 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHh----------------hh----------------------------------c
Confidence 888888888888777632211000000 00 0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
.....++.+...|...|++++|+..|+++.+.... ++..++..+...+...|++++|.++|+++.+. .| +...|.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 251 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWN 251 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 12334566788889999999999999999986322 25888999999999999999999999998853 44 578999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------------CchhHH
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL------------NDGAHV 496 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------------~~~~y~ 496 (645)
.+..+|.+.|++++|.+.+++. ...| +..+|..+..+|...|++++|...+++++++.|. +...+.
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 9999999999999999999987 3344 5789999999999999999999999999998776 357888
Q ss_pred HHHHHHHHcCCchHHHHHHHH
Q 048812 497 LLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~ 517 (645)
.|..++...|+.+.+.++.++
T Consensus 332 ~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 332 ALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999988887653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-15 Score=148.54 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH---HHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH---YGCMVD 434 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~ 434 (645)
+..+...|...|++++|++.|++ +.+...+..+...+...|++++|.+.|+.+.+. .|+... ..+++.
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~ 174 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVS 174 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHH
Confidence 33444445555555555555544 233444444444555555555555555554432 233211 111222
Q ss_pred HHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH-H
Q 048812 435 LLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD-M 511 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~-a 511 (645)
.+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++++|+++.++..++.++...|++++ +
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 222335555555555554 1223455555555555566666666666666666666655555556555555665544 3
Q ss_pred HHHHHHHHh
Q 048812 512 SRIRMKLRD 520 (645)
Q Consensus 512 ~~~~~~m~~ 520 (645)
.++++++.+
T Consensus 255 ~~~~~~~~~ 263 (291)
T 3mkr_A 255 NRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-15 Score=156.50 Aligned_cols=385 Identities=10% Similarity=-0.053 Sum_probs=220.6
Q ss_pred CChhhhhhHHHHHHhcCChHHHHHHHhhCC------------CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhh
Q 048812 71 RDPQISTQVFEFLVFTGDLGYAQQIIRQGD------------EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN 138 (645)
Q Consensus 71 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 138 (645)
....+||.|-..|...|++++|++.|++.. ....++|+.+...|...|++++|+..|++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~------- 121 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK------- 121 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------
Confidence 345678999999999999999999987642 2235689999999999999999999887754
Q ss_pred ccCChHHHHHHHccCCC---C-CcchHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHH---HhcCCC
Q 048812 139 KCGKLKEVCQLFDKLPN---R-DVISWNTMISCYTS--MGMYREGLGLLSKMGAEGVSPDE-VTMVSLISA---RTKLRD 208 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~---~-~~~~~n~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~ 208 (645)
++...... + ...+|+.+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++
T Consensus 122 ---------~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 122 ---------HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp ---------HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCC
T ss_pred ---------HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchH
Confidence 33333322 1 23456555555554 45789999999998875 4543 344444333 445677
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFK----CGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRL 283 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 283 (645)
.++|.+.+..+++.. +.+..++..+...+.. .|+.++|.+.+++.....| +..+|..+...|...|++++|+..
T Consensus 191 ~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp CCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 888888898888876 4456666666555554 4567889998886333333 677899999999999999999999
Q ss_pred HHhcc--cCCch-hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHH
Q 048812 284 FDEMV--ERNLI-SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTS 360 (645)
Q Consensus 284 ~~~m~--~~~~~-t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~ 360 (645)
|++.. .|+.. .+..+-..|...+ .. .. ...+..
T Consensus 270 ~~~al~~~p~~~~~~~~lg~~y~~~~-----------------~~--------------------~~-------~~~~~~ 305 (472)
T 4g1t_A 270 LKKALEYIPNNAYLHCQIGCCYRAKV-----------------FQ--------------------VM-------NLRENG 305 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHH-----------------HH--------------------HH-------HC----
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHH-----------------HH--------------------hh-------hHHHHH
Confidence 99887 34322 1211111111000 00 00 000000
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHH-H
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ----HYGCMVD-L 435 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~ 435 (645)
........+..++|+..|++..+.. +.+..++..+...+...|++++|.+.|++..+ +.|+.. .+..+.. .
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHH
Confidence 0001111223455666666655432 12234455556666666666666666666553 223221 1222222 2
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 048812 436 LGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 514 (645)
+...|++++|.+.+++. .+.|+...+.. ..+.+..++++.++.+|.++.+|..|+.+|...|++++|.+.
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23456777777766654 45555433322 234456777888889999999999999999999999999999
Q ss_pred HHHHHhCCCcccCceeE
Q 048812 515 RMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 515 ~~~m~~~~~~~~~~~s~ 531 (645)
+++..+.+-..+...+|
T Consensus 453 y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 453 SERGLESGSLIPSASSW 469 (472)
T ss_dssp -----------------
T ss_pred HHHHHhcCCCCCcHhhc
Confidence 99888776444444445
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-16 Score=159.77 Aligned_cols=234 Identities=11% Similarity=0.058 Sum_probs=190.2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhcc
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~ 305 (645)
+...+..+...|.+.|++++|...|+++....| +..+|..+...|.+.|++++|+..|+++.+.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------------- 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 344577788889999999999999988543344 67889999999999999999999988765322
Q ss_pred CCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 306 ~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
+.+..+|..+...|...|++++|+..|+++.+.
T Consensus 130 ----------------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 162 (365)
T 4eqf_A 130 ----------------------------------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ- 162 (365)
T ss_dssp ----------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ----------------------------------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh-
Confidence 235678999999999999999999999999874
Q ss_pred CCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 048812 386 TKPDQ-----------VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P 453 (645)
Q Consensus 386 ~~pd~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 453 (645)
.|+. ..+..+...+...|++++|.++|+++.+...-.++...+..+...|.+.|++++|.+.+++. .
T Consensus 163 -~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 163 -NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241 (365)
T ss_dssp -CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3332 23344577889999999999999999965333335889999999999999999999999987 3
Q ss_pred CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 454 IP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 454 ~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.. .+..+|..+..+|...|++++|+..+++++++.|+++.++..++.+|...|++++|...++++.+..
T Consensus 242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 4688999999999999999999999999999999999999999999999999999999999987643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-13 Score=145.47 Aligned_cols=356 Identities=12% Similarity=0.020 Sum_probs=278.9
Q ss_pred CCCcccHHHHHHHHHH----cCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHh----cC
Q 048812 101 EPEIKIWNSIIENQLI----NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS----MG 172 (645)
Q Consensus 101 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~----~g 172 (645)
..+..++..+...|.. .+++++|+..|++... ..+..++..|...|.. .+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~Lg~~y~~g~g~~~ 93 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----------------------QGYTPAEYVLGLRYMNGEGVPQ 93 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------------TTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----------------------CCCHHHHHHHHHHHHcCCCCCC
Confidence 3456667777777766 5666666666655421 1356678888888988 89
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCCH
Q 048812 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTK----LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK----CGKI 244 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~ 244 (645)
++++|++.|++..+.| +...+..+-..+.. .+++++|.+.+....+.| +...+..|..+|.. .++.
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999998876 55667777777776 789999999999999876 56678888899988 7899
Q ss_pred HHHHHHHcccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcccCCch-hHHHHHHhhhccCCchhhhhhccccc
Q 048812 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVK----SNERDEARRLFDEMVERNLI-SWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 245 ~~A~~~~~~m~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
++|.+.|++... ..+..++..+...|.. .++.++|.+.|++..+.+.. .+..+-..|.
T Consensus 168 ~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~---------------- 230 (490)
T 2xm6_A 168 VMAREWYSKAAE-QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYY---------------- 230 (490)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------
Confidence 999999987322 2478889999999998 89999999999998765432 2222221111
Q ss_pred hhhHHHHHHHHHHcCC-CCCcHHHHHHHHhhcCc-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048812 320 LYHGIWVHVYIKKNQI-SIDNIELAYDLFSEISE-KNVYLWTSVIAAYAM----AGHAQKAIDLFLEMEETGTKPDQVTF 393 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~-~~~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~ 393 (645)
.+. ...+.++|...|+...+ .+...+..+...|.. .++.++|+.+|++..+.| +...+
T Consensus 231 -------------~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~ 294 (490)
T 2xm6_A 231 -------------FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ 294 (490)
T ss_dssp -------------HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred -------------cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence 111 23478899999887654 566778888888888 899999999999998764 45566
Q ss_pred HHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHH
Q 048812 394 IALLSACSHG-----GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG---HLEESANFITSMPIPPDVSIWSSLL 465 (645)
Q Consensus 394 ~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~pd~~~~~~ll 465 (645)
..+...+... ++.++|..+|++..+ . .+...+..|..+|.+.| ++++|.+++++.-...++..+..|.
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg 370 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLG 370 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6677777766 899999999999885 2 35567788888888867 8899999999873336788999999
Q ss_pred HHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 048812 466 RACRC----HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK----AGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 466 ~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 523 (645)
..|.. .++.++|...++++.+.+ ++..+..|..+|.. .+++++|...+++..+.+.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99988 899999999999999865 46889999999998 8999999999999988763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-15 Score=149.64 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=128.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 443 (645)
+...|++++|+..++++.+.. +.+..++..+...+...|++++|.++++++.+. .| +...+..+...|.+.|+++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHH
Confidence 667788999999999988763 336788888888999999999999999988853 34 4778899999999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHHcCCch
Q 048812 444 ESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL------------NDGAHVLLANIYAKAGRLD 509 (645)
Q Consensus 444 ~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------------~~~~y~~l~~~~~~~g~~~ 509 (645)
+|.+.++++ ... .+..+|..+...+...|++++|...++++++..|. ++..+..++.+|...|+++
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 999999886 333 36788999999999999999999999999999998 6788999999999999999
Q ss_pred HHHHHHHHH
Q 048812 510 DMSRIRMKL 518 (645)
Q Consensus 510 ~a~~~~~~m 518 (645)
+|..++++.
T Consensus 304 ~A~~~~~~~ 312 (327)
T 3cv0_A 304 LVELTYAQN 312 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHH
Confidence 999987643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-17 Score=176.42 Aligned_cols=135 Identities=12% Similarity=0.132 Sum_probs=116.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcH
Q 048812 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI 340 (645)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~ 340 (645)
..|||+||++|++.|+.++|.++|++|.+...
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~------------------------------------------------ 158 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ------------------------------------------------ 158 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 46899999999999999999999988753210
Q ss_pred HHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHh
Q 048812 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL-VDEGYDFLSKKSRV 419 (645)
Q Consensus 341 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~ 419 (645)
....||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++|.++++.|+ .++|.++|++|. +
T Consensus 159 --------kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~-~ 229 (1134)
T 3spa_A 159 --------KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-Q 229 (1134)
T ss_dssp --------HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-H
T ss_pred --------cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-H
Confidence 001589999999999999999999999999999999999999999999999999997 578999999999 6
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
.|+.||..+|++++....+.+-++.+.++...+
T Consensus 230 kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 799999999999999888887666666664444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-13 Score=152.36 Aligned_cols=387 Identities=12% Similarity=0.077 Sum_probs=262.3
Q ss_pred HHHHHHHHhCC--CCChhhhhhHHHHHHhcCChHHHHHHHhhCC-CCC-----cccHHHHHHHHHHcCChhHHHHHHHHH
Q 048812 59 RIHSHLITTNL--MRDPQISTQVFEFLVFTGDLGYAQQIIRQGD-EPE-----IKIWNSIIENQLINGYPQEVFAIYLYL 130 (645)
Q Consensus 59 ~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 130 (645)
++.++.+...+ ..++.-....+..|+..|.+.+|..+++++. .|+ ...-|.++.+.++. +.....++..+.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL 1047 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL 1047 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh
Confidence 44444444333 2344455667788888888888888888765 222 24455666666665 445555555554
Q ss_pred hhcC-----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc
Q 048812 131 VTRT-----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205 (645)
Q Consensus 131 ~~~~-----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (645)
...+ ..+...|.+++|..+|++.. ....+.+.++. ..+++++|.++.++.. +..+|..+..++..
T Consensus 1048 d~~d~~eIA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1048 DNYDAPDIANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred hhccHHHHHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHh
Confidence 3222 55566777777777777764 22222333332 5567777777776542 35667777777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048812 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285 (645)
Q Consensus 206 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 285 (645)
.|++++|...|... .|...|..++..+.+.|++++|.+.|.......++....+.++.+|++.+++++.....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 77777777776442 45556666777777777777777777653333344334445777777777777533332
Q ss_pred hcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHH
Q 048812 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365 (645)
Q Consensus 286 ~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~ 365 (645)
..++...|..+-. .....+.+++|...|... ..|..+...|
T Consensus 1191 --~~~n~ad~~~iGd--------------------------------~le~eg~YeeA~~~Y~kA-----~ny~rLA~tL 1231 (1630)
T 1xi4_A 1191 --NGPNNAHIQQVGD--------------------------------RCYDEKMYDAAKLLYNNV-----SNFGRLASTL 1231 (1630)
T ss_pred --hCCCHHHHHHHHH--------------------------------HHHhcCCHHHHHHHHHhh-----hHHHHHHHHH
Confidence 2333333332222 223334889999999875 4899999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 048812 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 445 (645)
.+.|++++|++.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|
T Consensus 1232 vkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A 1232 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred HHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999876 3678999999999999999999876543 445677888999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHcCCchHHHHH
Q 048812 446 ANFITSM-PIPP-DVSIWSSLLRACRC--HQNVKLAEHAFKHLTETDP-----LNDGAHVLLANIYAKAGRLDDMSRI 514 (645)
Q Consensus 446 ~~~~~~m-~~~p-d~~~~~~ll~a~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~y~~l~~~~~~~g~~~~a~~~ 514 (645)
..+++.. +..| ....|.-|...+.+ -+++.++.++|..-..+.| .+...|.-++..|.+.|+|+.|...
T Consensus 1300 I~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1300 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999775 5544 33466555555555 4577778888887776666 5677888999999999999999854
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-13 Score=144.30 Aligned_cols=381 Identities=9% Similarity=0.062 Sum_probs=248.1
Q ss_pred hHHHHHhh--cCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHHHHHHH-HHc
Q 048812 43 DVIMVERS--CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQ-LIN 117 (645)
Q Consensus 43 ~~~~~l~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~-~~~ 117 (645)
.+..++.. .++++.++.+++.+++.- |.+...|..++..+.+.|++++|+.+|++.. .|++..|...+... ...
T Consensus 15 ~w~~l~~~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~ 93 (530)
T 2ooe_A 15 AWSILIREAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETK 93 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Confidence 34444443 378999999999998764 5577889999999999999999999999875 46777788777533 345
Q ss_pred CChhHHHH----HHHHHhhc------C--------chh---------hccCChHHHHHHHccCCC-CCc---chHHHHHH
Q 048812 118 GYPQEVFA----IYLYLVTR------T--------VLL---------NKCGKLKEVCQLFDKLPN-RDV---ISWNTMIS 166 (645)
Q Consensus 118 g~~~~A~~----~~~~m~~~------~--------~~~---------~~~g~~~~A~~~f~~m~~-~~~---~~~n~li~ 166 (645)
|+.++|.+ +|++.... + .+. .+.|+++.|+.+|++..+ |+. ..|.....
T Consensus 94 ~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~ 173 (530)
T 2ooe_A 94 GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173 (530)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Confidence 77776665 66555431 0 111 124667777777766543 221 22332221
Q ss_pred HH-------------HhcCChHHHHHHHHHH------hhCC---CCCCh--------hhHHHHHHHHhc----CCCh---
Q 048812 167 CY-------------TSMGMYREGLGLLSKM------GAEG---VSPDE--------VTMVSLISARTK----LRDL--- 209 (645)
Q Consensus 167 ~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~~--------~t~~~ll~~~~~----~~~~--- 209 (645)
.. .+.+++.+|..++.++ .+.. ++|+. ..|...+..... .++.
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~ 253 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence 10 1234455666555542 1111 23331 233333322211 1222
Q ss_pred -HHHHHHHHHHHHhCCCCchhHHHHHHHHHHH-------cCCHH-------HHHHHHcccCC-CCC-ChhhHHHHHHHHH
Q 048812 210 -EMGKNLHLFLEESTMKISGSLLNYLVDMYFK-------CGKIG-------EAQKLLGRYEI-DEV-DVVLWTTLVSGYV 272 (645)
Q Consensus 210 -~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~m~~-~~~-~~~~~~~li~~~~ 272 (645)
+.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++... ..| +...|..++..+.
T Consensus 254 ~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 254 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 24555666666653 4456666666666664 56665 67777776432 233 4666777777777
Q ss_pred hcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc
Q 048812 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352 (645)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~ 352 (645)
+.|++++|..+|+++.+.+ .
T Consensus 333 ~~g~~~~A~~~~~~al~~~------------------------------------------------------------p 352 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIE------------------------------------------------------------D 352 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSS------------------------------------------------------------S
T ss_pred hcCCHHHHHHHHHHHhCcc------------------------------------------------------------c
Confidence 7777777777776654321 1
Q ss_pred CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCC-ChHH
Q 048812 353 KNV-YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSA-CSHGGLVDEGYDFLSKKSRVYNIKP-KMQH 428 (645)
Q Consensus 353 ~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 428 (645)
.+. ..|..++..+.+.|+.++|.++|++..+. .|+ ...|...... +...|+.++|..+|+...+. .| +...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~ 427 (530)
T 2ooe_A 353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEY 427 (530)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHH
T ss_pred cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHH
Confidence 222 47888888888999999999999999875 333 3333332222 33589999999999998864 35 4788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM----PIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m----~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999999986 33332 458999999999999999999999999998884
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-14 Score=140.13 Aligned_cols=267 Identities=12% Similarity=0.081 Sum_probs=171.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDE--VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 245 (645)
....|++..|+..+++.... .|+. .....+.+++...|+++.|...+.. .-+|+...+..+...|...|+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666665554332 2222 2334445555555655555543322 12344455555555666666666
Q ss_pred HHHHHHcccCCC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 246 EAQKLLGRYEID--EV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 246 ~A~~~~~~m~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
+|.+.++++... .| +...+..+...+.+.|++++|++.|++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------------------------------ 126 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------------------------------ 126 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------------------------------
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------------------------------
Confidence 666666553211 23 344455555556666666666665544
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHH
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF---IALLSA 399 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a 399 (645)
..+...+..++..|.+.|++++|++.|+++.+. .|+.... ...+..
T Consensus 127 -----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 127 -----------------------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSL 175 (291)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred -----------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHH
Confidence 134556777788888888888888888888875 3553211 123334
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH-
Q 048812 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKL- 476 (645)
Q Consensus 400 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~- 476 (645)
+...|++++|..+|+++.+. ...+...++.+..++.+.|++++|.+.+++. ...| +..+|..++..+...|+.++
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 44568899999999988864 2346788888999999999999999998885 4444 67789999999999999875
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 477 a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
+.++++++++++|+++.+ .+...+.+.++++..
T Consensus 254 a~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 254 TNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 679999999999998754 345566666665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.3e-15 Score=147.06 Aligned_cols=267 Identities=12% Similarity=0.022 Sum_probs=206.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|.+.+..+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 55677888889999999999999999998763 2356678888888899999999999999998875 556778888889
Q ss_pred HHHHcCCHHHHHHHHcccCCCCC-ChhhHHHH--------------HH-HHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTL--------------VS-GYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
.|...|++++|.+.|++.....| +...+..+ .. .+...|++++|.+.++++.+.+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 168 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--------- 168 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---------
Confidence 99999999999988887433333 23333333 11 2444455555555555443211
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 380 (645)
..+...|..+...|...|++++|+..|++
T Consensus 169 ---------------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 197 (327)
T 3cv0_A 169 ---------------------------------------------------PNDAQLHASLGVLYNLSNNYDSAAANLRR 197 (327)
T ss_dssp ---------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 23567888999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC--
Q 048812 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-- 456 (645)
Q Consensus 381 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-- 456 (645)
+.+.. +.+..++..+...+...|++++|.++|+++.+. .| +...+..+...|.+.|++++|.+.+++. ...|
T Consensus 198 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 198 AVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 98763 335788899999999999999999999998853 44 4788999999999999999999999886 2233
Q ss_pred -----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 457 -----------DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 457 -----------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+..+|..+..++...|+.++|..++++.++..|
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 274 TTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp CC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999988776443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=171.94 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEME---ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
..|||+||.+|++.|+.++|.++|++|. ..|+.||.+||++||.+|++.|++++|.++|++|. ..|+.||..+|++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCcHHHHHH
Confidence 4689999999999999999999998876 45899999999999999999999999999999999 6899999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCC-----CchhHHHHHHH
Q 048812 432 MVDLLGRAGH-LEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TDPL-----NDGAHVLLANI 501 (645)
Q Consensus 432 li~~~~~~g~-~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~-----~~~~y~~l~~~ 501 (645)
||+++++.|+ .++|.++|++| ++.||..+|+++++++.+. ..++..+++.. ..|. ...+-..|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 9999999998 57899999999 8999999999999776543 23333333321 1221 11233468888
Q ss_pred HHHcC
Q 048812 502 YAKAG 506 (645)
Q Consensus 502 ~~~~g 506 (645)
|++.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 88766
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-13 Score=125.94 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=145.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+...|..+...+.+.|++++|+..|++..+.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------ 35 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN------------------------------------------------ 35 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------------------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 45567777777777777777777777665433
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc-----------CcHH
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHG-----------GLVD 407 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~-----------g~~~ 407 (645)
+.+...|..+...+.+.|++++|+..|++..+. .| +...+..+..++... |+++
T Consensus 36 ------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 36 ------------PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp ------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 235566777777888888888888888887775 34 456777777777777 9999
Q ss_pred HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048812 408 EGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485 (645)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 485 (645)
+|...|++..+ +.|+ ...+..+..+|...|++++|.+.+++. ....+...|..+..++...|++++|+..+++++
T Consensus 102 ~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 102 QALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998885 4564 678888899999999999999999886 212788899999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 486 ~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+++|+++..+..++.+|...|++++|...+++.
T Consensus 179 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 179 EQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHSTTCHHHHHHHHHHHTC--------------
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-12 Score=136.33 Aligned_cols=369 Identities=10% Similarity=-0.045 Sum_probs=218.2
Q ss_pred CCHHHHHHHHHHHHHh-----C--CCC-ChhhhhhHHHHHHhcCChHHHHHHHhhCC-------C---C-CcccHHHHHH
Q 048812 52 SSIDEFERIHSHLITT-----N--LMR-DPQISTQVFEFLVFTGDLGYAQQIIRQGD-------E---P-EIKIWNSIIE 112 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~-----g--~~~-~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-------~---~-~~~~~~~li~ 112 (645)
|+.++|.+.+...++. + ..| ...+|+.+...|...|++++|...|++.. . + ...+++.+..
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 8999999888877643 1 122 34578889999999999999999887642 1 1 2345666555
Q ss_pred HHHHcC--ChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHH---HHhcCChHHHHHHHHHHhhC
Q 048812 113 NQLING--YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC---YTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 113 ~~~~~g--~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~---~~~~g~~~~A~~~~~~m~~~ 187 (645)
++...| ++++|++.|++... +...+...+..+... +...++.++|++.|++..+.
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~--------------------~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALE--------------------KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHH--------------------HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHH--------------------hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 555543 35555555554332 111244455555444 44568888999999988775
Q ss_pred CCCCChhhHHHHHHHHh----cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-Chh
Q 048812 188 GVSPDEVTMVSLISART----KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVV 262 (645)
Q Consensus 188 g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~ 262 (645)
. +.+..++..+...+. ..+++++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|++.....| +..
T Consensus 205 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 205 N-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp C-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred C-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence 3 224455555544444 3467889999999998876 66778889999999999999999999988544445 566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHH
Q 048812 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL 342 (645)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~ 342 (645)
+|..+...|...+....+... .... ...... ...+.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~------~~~~-------------------------~~~~~~-------------~~~~~ 318 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRE------NGMY-------------------------GKRKLL-------------ELIGH 318 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------------------------------CHHHHH-------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHH------HHHH-------------------------HHHHHH-------------hhHHH
Confidence 777777666432211111000 0000 000000 02344
Q ss_pred HHHHHhhcC---cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHh
Q 048812 343 AYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV--TFIALLS-ACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 343 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~~ 416 (645)
|...|.... ..+..+|..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++|++.|.+.
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555554432 3456789999999999999999999999998864433321 2222222 345789999999999998
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 417 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.+ +.|+........ +.+.+++++. . .+.+..+|..|...+...|++++|++.|+++++++|.+|.+
T Consensus 399 l~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 399 VK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred Hh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 85 677654333222 2233333332 2 23467789999999999999999999999999999888766
Q ss_pred HHHH
Q 048812 495 HVLL 498 (645)
Q Consensus 495 y~~l 498 (645)
+.-+
T Consensus 467 ~~~~ 470 (472)
T 4g1t_A 467 SSWN 470 (472)
T ss_dssp ----
T ss_pred hhcC
Confidence 5433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-13 Score=128.79 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCC
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~ 307 (645)
...+..+...|...|++++|...|++......+...|..+...|...|++++|++.|++..+.+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-------------- 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--------------
Confidence 345666677777777777777777653221256677777778888888888888877765421100
Q ss_pred chhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK----NVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 308 ~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
. .+ ...+|..+...|...|++++|+..|++...
T Consensus 71 ------------------------------------------~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 71 ------------------------------------------M-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp ------------------------------------------T-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------------c-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 0 01 146788899999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHH
Q 048812 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSI 460 (645)
Q Consensus 384 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~ 460 (645)
. .|+. ..+...|++++|.+.++.+.+ ..| +...+..+...+...|++++|.+.+++. . .+.+..+
T Consensus 108 ~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 175 (258)
T 3uq3_A 108 E--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175 (258)
T ss_dssp H--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred c--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHH
Confidence 5 4553 345667889999999999885 345 4678889999999999999999999987 2 2346789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
|..+...+...|++++|...++++++..|+++..|..++.+|...|++++|...+++..+.
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999988663
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-12 Score=126.18 Aligned_cols=234 Identities=9% Similarity=-0.027 Sum_probs=131.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--c----hhHHH
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI--S----GSLLN 232 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~ 232 (645)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|.+.+..+++..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777777777777777777776665 566666667777777777777777776666542110 1 34444
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhh
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~ 312 (645)
.+...|.+.|++++|...|++.....|+.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------------------------- 112 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------------------------------------------------- 112 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH---------------------------------------------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh---------------------------------------------------
Confidence 44555555555555555544421111111
Q ss_pred hhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH
Q 048812 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QV 391 (645)
Q Consensus 313 a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ 391 (645)
..+...|++++|+..++++... .|+ ..
T Consensus 113 --------------------------------------------------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 140 (258)
T 3uq3_A 113 --------------------------------------------------DILTKLRNAEKELKKAEAEAYV--NPEKAE 140 (258)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHC--CHHHHH
T ss_pred --------------------------------------------------HHHHHHhHHHHHHHHHHHHHHc--CcchHH
Confidence 1223334445555555554442 222 33
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACR 469 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~ 469 (645)
.+..+...+...|++++|.+.++++.+.. ..+...|..+...|.+.|++++|.+.+++. ...| +..+|..+...+.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 44444445555555555555555554321 113455555555666666666666655554 2223 4667777778888
Q ss_pred hcCChHHHHHHHHHHHhcC------CCCchhHHHHH
Q 048812 470 CHQNVKLAEHAFKHLTETD------PLNDGAHVLLA 499 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~------p~~~~~y~~l~ 499 (645)
..|+.++|...+++++++. |.+...+..+.
T Consensus 219 ~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 8888888888888888877 66655544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=127.62 Aligned_cols=258 Identities=12% Similarity=0.040 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS--GSLLNYLVDM 237 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~ 237 (645)
.+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+..+++.+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44455566667777777777777766652 11333566666666666666666666666665321111 1224555555
Q ss_pred HHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhcc
Q 048812 238 YFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316 (645)
Q Consensus 238 y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~ 316 (645)
|.+.|++++|.+.|++.....| +..+|..+...|...|++++|++.|++..+.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------- 138 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------------------------- 138 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-------------------------
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-------------------------
Confidence 6666666666655555222222 33445555555555555555555554443221
Q ss_pred ccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 048812 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIA 395 (645)
Q Consensus 317 ~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ 395 (645)
..+...|..+...+...+++++|+..|++..+. .|+ ...+..
T Consensus 139 -----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 181 (272)
T 3u4t_A 139 -----------------------------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLW 181 (272)
T ss_dssp -----------------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred -----------------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHH
Confidence 123334444441222233555555555554442 222 333333
Q ss_pred HHHHHhccCc---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048812 396 LLSACSHGGL---VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472 (645)
Q Consensus 396 ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g 472 (645)
+..++...|+ .++|...++++.+...-.|+.. - ..-..+|..+...+...|
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~-------------------------~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K-------------------------DELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-------------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-------------------------HHHHHHHHHHHHHHHHcC
Confidence 3333333333 3333333333332111111100 0 001246777888889999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
++++|...++++++++|+++.+...+..+....+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999999999877776665554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-13 Score=131.50 Aligned_cols=241 Identities=12% Similarity=-0.032 Sum_probs=154.1
Q ss_pred CChHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 048812 207 RDLEMGKNLHLFLEESTM---KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARR 282 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 282 (645)
+++++|.+.+..+++... +.+..++..+...|...|++++|...|++.....| +..+|..+...|...|++++|++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555554321 11344555556666666666666666655322223 45666666677777777777777
Q ss_pred HHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHH
Q 048812 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVI 362 (645)
Q Consensus 283 ~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li 362 (645)
.|++..+.+ +.+..+|..+.
T Consensus 99 ~~~~al~~~------------------------------------------------------------~~~~~~~~~la 118 (275)
T 1xnf_A 99 AFDSVLELD------------------------------------------------------------PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHC------------------------------------------------------------TTCTHHHHHHH
T ss_pred HHHHHHhcC------------------------------------------------------------ccccHHHHHHH
Confidence 666554321 12455677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 442 (645)
..|...|++++|+..|+++.+. .|+.......+..+...|++++|...+++.... ..++...+ .++..+...++.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ 193 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISE 193 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCH
Confidence 7778888888888888887764 455444444445556667888888888776643 22333333 366667777777
Q ss_pred HHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 443 EESANFITSM-PIPPD-----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 443 ~~A~~~~~~m-~~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|.+...+ ..++...|++++|.+.+
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 8888877765 33232 57888899999999999999999999999999775444 55677888888887765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-11 Score=128.67 Aligned_cols=307 Identities=12% Similarity=0.061 Sum_probs=197.9
Q ss_pred hhhccCCh---HHHHHHHccCCCCCcchHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCC
Q 048812 136 LLNKCGKL---KEVCQLFDKLPNRDVISWNTMISCYTSMG-----MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207 (645)
Q Consensus 136 ~~~~~g~~---~~A~~~f~~m~~~~~~~~n~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (645)
+|...|+. ++|...|++..+.+..++..|...+...+ ++++|++.|++..+.|.. ..+..+...+...+
T Consensus 44 ~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 44 IQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP 120 (452)
T ss_dssp ---------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG
T ss_pred HHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC
Confidence 33445555 78888887776667778888888666665 778999999999987643 25555655555544
Q ss_pred Ch---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC----CHHHHHHHHcccCCCCCChhhHHHHHHHHHhcC---CH
Q 048812 208 DL---EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG----KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN---ER 277 (645)
Q Consensus 208 ~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g---~~ 277 (645)
.. ..+.+.+......| +......|...|...+ ..+.|..++.. ....+...+..|...|...| +.
T Consensus 121 ~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~--a~~~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp GGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH--HTTTCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCcccH
Confidence 33 34555555555555 3556777888888888 45566666766 33445558889999999999 88
Q ss_pred HHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhH
Q 048812 278 DEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357 (645)
Q Consensus 278 ~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~ 357 (645)
++|++.|++..+.+. ++...
T Consensus 196 ~~A~~~~~~aa~~g~------------------------------------------------------------~~a~~ 215 (452)
T 3e4b_A 196 AELLKQMEAGVSRGT------------------------------------------------------------VTAQR 215 (452)
T ss_dssp HHHHHHHHHHHHTTC------------------------------------------------------------SCHHH
T ss_pred HHHHHHHHHHHHCCC------------------------------------------------------------HHHHH
Confidence 999999887764442 23333
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 048812 358 WTSVIAAYAMA----GHAQKAIDLFLEMEETGTKPDQVTFIALLSA-C--SHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430 (645)
Q Consensus 358 ~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (645)
+..+...|... +++++|+.+|++.. .| +...+..+... + ...++.++|.++|++..+ .| +...+.
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~ 287 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAEL 287 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHH
Confidence 34455555433 67888888888876 33 33444444444 3 457888899998888873 33 566777
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 431 CMVDLLGRAG-----HLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 431 ~li~~~~~~g-----~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
.|..+|. .| ++++|.+.|++.- +-++..+..|...|.. ..|.++|...|++..+.+ ++.....|..+
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~ 363 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQL 363 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHH
Confidence 7777776 55 8999999998887 6677778777777765 348999999999988754 45677888888
Q ss_pred HHH----cCCchHHHHHHHHHHhCC
Q 048812 502 YAK----AGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 502 ~~~----~g~~~~a~~~~~~m~~~~ 522 (645)
|.. ..+.++|...++...+.|
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 875 357888999998887766
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-12 Score=121.07 Aligned_cols=200 Identities=9% Similarity=0.069 Sum_probs=169.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcH
Q 048812 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI 340 (645)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~ 340 (645)
...|..+...+...|++++|.+.|+++.+.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------------------- 67 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------------------- 67 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------------------------------------------
Confidence 5678888889999999999999988765322
Q ss_pred HHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 048812 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420 (645)
Q Consensus 341 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 420 (645)
..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.++++++.+ .
T Consensus 68 -----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~ 134 (252)
T 2ho1_A 68 -----------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-D 134 (252)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-C
T ss_pred -----------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-C
Confidence 2356678888899999999999999999998763 33677888888999999999999999999884 3
Q ss_pred CCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 421 NIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 421 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
+..| +...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|++++|...++++++..|.+...+..
T Consensus 135 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 214 (252)
T 2ho1_A 135 TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLL 214 (252)
T ss_dssp TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3455 4678888999999999999999999886 223 357889999999999999999999999999999999899999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++.+|...|++++|.+.++++.+..
T Consensus 215 ~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 215 GIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987644
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-11 Score=116.41 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=166.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+...|..+...+...|++++|++.|+++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------------------ 38 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------------------ 38 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------------------
Confidence 56678888888899999999998888765322
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHH
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG-GLVDEGYDFLSKKSR 418 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~ 418 (645)
..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+... |++++|..+++.+.+
T Consensus 39 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 39 ------------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ------------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 2345678888899999999999999999998763 33677888888899999 999999999999885
Q ss_pred hcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCchh
Q 048812 419 VYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP-LNDGA 494 (645)
Q Consensus 419 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p-~~~~~ 494 (645)
.+..|+ ...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++|...++++++..| .++..
T Consensus 106 -~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 106 -DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp -STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred -CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 334443 678888999999999999999999886 3334 578889999999999999999999999999999 88888
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+..+...+...|+.++|..+++.+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 185 LLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888999999999999999999988654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=123.51 Aligned_cols=210 Identities=12% Similarity=0.069 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccC
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~ 306 (645)
...+..+...|...|++++|...|++.....| +...|..+...+...|++++|++.|+++.+.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD--------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------
Confidence 33444455555566666666665555322222 45555556666666666666666655543211
Q ss_pred CchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048812 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386 (645)
Q Consensus 307 ~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 386 (645)
..+...|..+...|...|++++|++.|+++.+..
T Consensus 88 ---------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 121 (243)
T 2q7f_A 88 ---------------------------------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG- 121 (243)
T ss_dssp ---------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-
T ss_pred ---------------------------------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 1234455556666666666666666666666542
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHH
Q 048812 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSL 464 (645)
Q Consensus 387 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~l 464 (645)
+.+...+..+...+...|++++|.++++++.+. ...+...+..+...+.+.|++++|.+.+++. . .+.+..+|..+
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 224555556666666666666666666666532 1123455556666666666666666666554 1 12245566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
...+...|+.++|...+++++++.|+++..+..+..
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 666666666666666666666666666555544433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-12 Score=120.08 Aligned_cols=206 Identities=12% Similarity=0.032 Sum_probs=160.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccC
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~ 306 (645)
...+..+...|...|++++|...|+++....| +...|..+...|...|++++|.+.|+++.+.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 45666777778888888888888776432233 56778888888888888888888887764322
Q ss_pred CchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048812 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386 (645)
Q Consensus 307 ~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 386 (645)
..+...|..+...|...|++++|++.|+++...+.
T Consensus 102 ---------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 136 (252)
T 2ho1_A 102 ---------------------------------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136 (252)
T ss_dssp ---------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT
T ss_pred ---------------------------------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc
Confidence 23456677888888899999999999998887444
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 048812 387 KPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWS 462 (645)
Q Consensus 387 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~ 462 (645)
.|+ ...+..+..++...|++++|.++++++.+. .| +...+..+...|.+.|++++|.+.++++ ... .+...+.
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 213 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL 213 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 554 567777888888999999999999988853 34 4778888999999999999999999886 333 4677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.+...+...|+.++|.+.++++++..|+++....
T Consensus 214 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888999999999999999999999998865543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=116.90 Aligned_cols=210 Identities=10% Similarity=0.077 Sum_probs=160.4
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
.+..++..+...|...|++++|.+.|+......| +...|..+...|...|++++|.+.|+++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 3456677777788888888888888776432233 56678888888888888888888887664321
Q ss_pred cCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 048812 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA-GHAQKAIDLFLEMEE 383 (645)
Q Consensus 305 ~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~ 383 (645)
..+..+|..+...|... |++++|+..|+++.+
T Consensus 73 -----------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 73 -----------------------------------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp -----------------------------------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred -----------------------------------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 23455677788888888 999999999998887
Q ss_pred cCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-C-CCH
Q 048812 384 TGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI-P-PDV 458 (645)
Q Consensus 384 ~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~-pd~ 458 (645)
.+..|+ ...+..+..++...|++++|.+.++++.+. .| +...+..+...+.+.|++++|.+.+++. .. + .+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 434444 567777888888899999999999888853 34 4778888899999999999999998876 22 2 466
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
..+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 183 DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 7777777888999999999999999999999887665443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-12 Score=130.45 Aligned_cols=247 Identities=8% Similarity=0.024 Sum_probs=141.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048812 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRD-LEMGKNLHLFLEESTMKISGSLLNYLV 235 (645)
Q Consensus 158 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 235 (645)
...|+.+...+.+.|++++|++.|++.+.. .| +...|..+..++...|+ +++|...+..+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345666666666667777777766666654 23 23455555555555564 666666666655554 33444555555
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 236 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
.+|.+.|++++|...|++ +.+.+
T Consensus 174 ~~~~~~g~~~eAl~~~~k---------------------------------al~ld------------------------ 196 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIAD---------------------------------ILNQD------------------------ 196 (382)
T ss_dssp HHHHHHTCCTTHHHHHHH---------------------------------HHHHC------------------------
T ss_pred HHHHHccCHHHHHHHHHH---------------------------------HHHhC------------------------
Confidence 555555555555555544 33211
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 395 (645)
..+...|..+..++...|++++|+..|+++++... -+...|+.
T Consensus 197 ------------------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~ 239 (382)
T 2h6f_A 197 ------------------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQ 239 (382)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHH
T ss_pred ------------------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 12344455555555555555555555555554311 13444555
Q ss_pred HHHHHhc-cCcHHHH-----HHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHH
Q 048812 396 LLSACSH-GGLVDEG-----YDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAG--HLEESANFITSMPIPP-DVSIWSSLL 465 (645)
Q Consensus 396 ll~a~~~-~g~~~~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-d~~~~~~ll 465 (645)
+..++.. .|..++| ++.|++..+ +.|+ ...|..+..+|...| ++++|.+.+.++...| +...+..|.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La 316 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 5555544 3333444 355555553 3443 455666666666655 4666666666654334 456677777
Q ss_pred HHHHhcC--------C-hHHHHHHHHHH-HhcCCCCchhHHHHHHHHHH
Q 048812 466 RACRCHQ--------N-VKLAEHAFKHL-TETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 466 ~a~~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~y~~l~~~~~~ 504 (645)
..+...| + .++|..+++++ .+++|.....|..+...+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 7777653 2 58899999999 89999988888877776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-12 Score=119.57 Aligned_cols=200 Identities=12% Similarity=0.090 Sum_probs=156.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
...+|..+...+...|++++|...|+++.+.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------ 53 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------------------------------ 53 (243)
T ss_dssp --------------------CCTTHHHHHTTC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 55678888888999999999999888876433
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
..+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|.++++++.+.
T Consensus 54 ------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 120 (243)
T 2q7f_A 54 ------------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120 (243)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2356778889999999999999999999998863 336788888999999999999999999999853
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
. ..+...+..+...+.+.|++++|.+.++++ .. +.+...|..+...+...|++++|...++++++..|.++..+..
T Consensus 121 ~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (243)
T 2q7f_A 121 G--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198 (243)
T ss_dssp T--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 2 235778899999999999999999999887 22 3467889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++.+|...|++++|.+.++++.+..
T Consensus 199 la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 199 AGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999987643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-11 Score=116.49 Aligned_cols=159 Identities=11% Similarity=0.003 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCCh
Q 048812 355 VYLWTSVIAAYAM----AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH----GGLVDEGYDFLSKKSRVYNIKPKM 426 (645)
Q Consensus 355 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~ 426 (645)
..++..+...|.. .|++++|+..|++..+.+ +..++..+...+.. .+++++|.++|++..+ .+ +.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~ 146 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DG 146 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cH
Confidence 3445555666666 667777777776666653 55566666666666 6677777777766663 22 44
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 427 QHYGCMVDLLGR----AGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 427 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
..+..+...|.. .+++++|.+.+++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..|
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l 224 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNL 224 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHH
Confidence 555666666666 67777777776665212345666666777777 7777777777777777655 4566777
Q ss_pred HHHHHH----cCCchHHHHHHHHHHhCC
Q 048812 499 ANIYAK----AGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 499 ~~~~~~----~g~~~~a~~~~~~m~~~~ 522 (645)
..+|.. .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777 777777777777776655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-12 Score=119.85 Aligned_cols=207 Identities=16% Similarity=0.052 Sum_probs=117.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44555666666666666666666666665542 1234455555555555666666666655555553 333444444444
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhcc
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~ 316 (645)
.|.+.+. . .. + .+...|++++|+..|++..+.+
T Consensus 82 ~~~~~~~---------~--~~--~---------~~~~~g~~~~A~~~~~~al~~~------------------------- 114 (217)
T 2pl2_A 82 AYVALYR---------Q--AE--D---------RERGKGYLEQALSVLKDAERVN------------------------- 114 (217)
T ss_dssp HHHHHHH---------T--CS--S---------HHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHhhh---------h--hh--h---------hcccccCHHHHHHHHHHHHHhC-------------------------
Confidence 4443310 0 00 0 0112266666666666554222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048812 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396 (645)
Q Consensus 317 ~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 396 (645)
+.+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 115 -----------------------------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 115 -----------------------------------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp -----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred -----------------------------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 2345667778888888888888888888888776 677778888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
..++...|++++|...|++..+ +.| +...+..+..++.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888888775 345 3566777777777888888887777654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=131.81 Aligned_cols=297 Identities=14% Similarity=0.020 Sum_probs=216.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC-C
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD----EVTMVSLISARTKLRDLEMGKNLHLFLEES----TMK-I 226 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~ 226 (645)
.....+......+.+.|++++|+..|++..+.+. .+ ...+..+...+...|+++.|...+..+++. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4555677778889999999999999999987632 12 246777888888999999999998887654 211 2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCC---CC----hhhHHHHHHHHHhcCC--------------------HHH
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE---VD----VVLWTTLVSGYVKSNE--------------------RDE 279 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~----~~~~~~li~~~~~~g~--------------------~~~ 279 (645)
...++..+...|...|++++|...|++..... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 35567778889999999999998887632111 12 3467778888888888 666
Q ss_pred HHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhH
Q 048812 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYL 357 (645)
Q Consensus 280 A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~ 357 (645)
|.+.+++.. .++..... ....+
T Consensus 166 A~~~~~~al--------------------------------------------------------~~~~~~~~~~~~~~~ 189 (406)
T 3sf4_A 166 AVDFYEENL--------------------------------------------------------SLVTALGDRAAQGRA 189 (406)
T ss_dssp HHHHHHHHH--------------------------------------------------------HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH--------------------------------------------------------HHHHhccCcHHHHHH
Confidence 666655432 22222211 12356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQH 428 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 428 (645)
|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..++++..+...-.++ ..+
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 8888999999999999999999987531 1122 347788888999999999999999987743211122 567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCchh
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM----PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDP------LNDGA 494 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m----~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p------~~~~~ 494 (645)
+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ....+
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 349 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTA 349 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 888999999999999999998876 11122 55788889999999999999999999988532 23456
Q ss_pred HHHHHHHHHHcCCch
Q 048812 495 HVLLANIYAKAGRLD 509 (645)
Q Consensus 495 y~~l~~~~~~~g~~~ 509 (645)
+..+..+|...|+..
T Consensus 350 ~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 350 RLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhHhH
Confidence 778888888888764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-11 Score=117.02 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=180.3
Q ss_pred chhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHhcCCCh
Q 048812 135 VLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE--VTMVSLISARTKLRDL 209 (645)
Q Consensus 135 ~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~ 209 (645)
..+...|++++|...|++..+ .+..+|..+...|.+.|++++|++.|++..+.+..|+. .+|..+...+...|++
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 345688999999999998652 45668999999999999999999999999885322222 2478888999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 210 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++|...+..+++.. +.+..++..+...|...|++++|...|++.....| +...|..+...+...+++++|.+.|++..
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 55778999999999999999999999998655455 67778888734445569999999998765
Q ss_pred cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 289 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
+.+ +.+...|..+...+...
T Consensus 170 ~~~------------------------------------------------------------p~~~~~~~~~~~~~~~~ 189 (272)
T 3u4t_A 170 ELK------------------------------------------------------------PNIYIGYLWRARANAAQ 189 (272)
T ss_dssp HHS------------------------------------------------------------TTCHHHHHHHHHHHHHH
T ss_pred HhC------------------------------------------------------------ccchHHHHHHHHHHHHc
Confidence 322 23467788888999988
Q ss_pred CC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 048812 369 GH---AQKAIDLFLEMEETG-TKPD------QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425 (645)
Q Consensus 369 g~---~~~A~~l~~~m~~~g-~~pd------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 425 (645)
|+ +++|+..|++..+.. -.|+ ..++..+...+...|++++|.++|+++.+ +.|+
T Consensus 190 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~ 253 (272)
T 3u4t_A 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA---LDPT 253 (272)
T ss_dssp STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcc
Confidence 98 888999999987642 2233 24677777888888999999999988885 3554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=120.46 Aligned_cols=243 Identities=7% Similarity=-0.091 Sum_probs=160.5
Q ss_pred hcCChHHHHHHHHHHhhCCCC--C-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH
Q 048812 170 SMGMYREGLGLLSKMGAEGVS--P-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246 (645)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 246 (645)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346778888888887765321 1 24466777777778888888888888887765 4567778888888888888888
Q ss_pred HHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHH
Q 048812 247 AQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325 (645)
Q Consensus 247 A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~ 325 (645)
|.+.|++.....| +..+|..+...|.+.|++++|.+.|+++.+.+.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------------------------------- 142 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--------------------------------- 142 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------------------
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---------------------------------
Confidence 8888877433334 577888888888888888888888887753221
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 048812 326 VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405 (645)
Q Consensus 326 i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 405 (645)
+...+...+..+...|++++|+..+++.... .+++...+ .++..+...++
T Consensus 143 ----------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 192 (275)
T 1xnf_A 143 ----------------------------NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNIS 192 (275)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSC
T ss_pred ----------------------------CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcC
Confidence 1111222233335567888888888777665 23333333 35666667777
Q ss_pred HHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048812 406 VDEGYDFLSKKSRVYNIKPK-----MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~ 479 (645)
.++|.+.+....+ ..|+ ...+..+...|.+.|++++|.+.+++. ...|+. +.....++...|++++|..
T Consensus 193 ~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 193 EQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp HHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHH
Confidence 7888887777652 2332 467778888888888888888888876 455533 2233445666677777766
Q ss_pred HH
Q 048812 480 AF 481 (645)
Q Consensus 480 ~~ 481 (645)
.+
T Consensus 268 ~~ 269 (275)
T 1xnf_A 268 DL 269 (275)
T ss_dssp --
T ss_pred HH
Confidence 65
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=7.9e-12 Score=128.11 Aligned_cols=228 Identities=11% Similarity=0.119 Sum_probs=185.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCC-HHHHHHHHHhcccCCchhHHHHHHhhhcc
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNE-RDEARRLFDEMVERNLISWTLMISGMLNQ 305 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~t~~~ll~~~~~~ 305 (645)
..+++.+...|.+.|++++|...|++.....| +...|+.+...+...|+ +++|+..|++....+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 44566677777888888888888887443444 67788888888888886 999988888766433
Q ss_pred CCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 306 ~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
..+...|+.+...|...|++++|+..|+++++..
T Consensus 163 ----------------------------------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld 196 (382)
T 2h6f_A 163 ----------------------------------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD 196 (382)
T ss_dssp ----------------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred ----------------------------------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2467789999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHH-cCCHHHH-----HHHHHhC-CCCC-
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGR-AGHLEES-----ANFITSM-PIPP- 456 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m-~~~p- 456 (645)
+-+...|..+..++...|++++|+..|+++.+ +.| +...|+.+..+|.+ .|..++| ++.+++. ...|
T Consensus 197 -P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~ 272 (382)
T 2h6f_A 197 -AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272 (382)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred -ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence 23578899999999999999999999999995 466 47889999999999 6665777 4666665 4445
Q ss_pred CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC---------CchHHHHHHHHH-Hh
Q 048812 457 DVSIWSSLLRACRCHQ--NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG---------RLDDMSRIRMKL-RD 520 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g---------~~~~a~~~~~~m-~~ 520 (645)
+...|..+...+...| ++++|...++++ +.+|+++..+..|+.+|.+.| ..++|.++++++ .+
T Consensus 273 ~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 273 NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 5778999999998888 689999999998 899999999999999999875 258899999988 55
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-10 Score=113.19 Aligned_cols=130 Identities=12% Similarity=-0.033 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCCh
Q 048812 355 VYLWTSVIAAYAM----AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH----GGLVDEGYDFLSKKSRVYNIKPKM 426 (645)
Q Consensus 355 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~ 426 (645)
..++..+...|.. .|++++|+..|++..+.+ +...+..+...+.. .++.++|.++|++..+. .+.
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~ 182 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDS 182 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCH
Confidence 3455566666666 777778888777777754 45556666666666 77888888888777742 245
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCC
Q 048812 427 QHYGCMVDLLGR----AGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 427 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..+..+..+|.. .+++++|.+.+++.-...+...+..|...+.. .++.++|...++++.+.+|++
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 667777778888 88888888888776212236677888888888 899999999999999998865
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-12 Score=129.87 Aligned_cols=166 Identities=11% Similarity=-0.003 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGH-----------------AQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHGGLVDEGYDF 412 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 412 (645)
..+|..+...|...|+ +++|+..+++..+. +..|. ..++..+...+...|++++|.++
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3456677777777788 78888877775432 22222 34667777788888888888888
Q ss_pred HHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCChHHHHHH
Q 048812 413 LSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFITSM----PIPP----DVSIWSSLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 413 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----d~~~~~~ll~a~~~~g~~~~a~~~ 480 (645)
+++..+...-.++ ...+..+...|...|++++|.+.+++. +... ...++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (411)
T 4a1s_A 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY 325 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8877643211112 236778888888889988888888765 1111 145778888889999999999999
Q ss_pred HHHHHhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 481 FKHLTETDPLN------DGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 481 ~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+++++++.+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 326 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99988854322 34777899999999999999999888755
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-11 Score=125.30 Aligned_cols=273 Identities=14% Similarity=0.046 Sum_probs=208.1
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHcccCC-----CC-C-
Q 048812 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS----GSLLNYLVDMYFKCGKIGEAQKLLGRYEI-----DE-V- 259 (645)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~-~- 259 (645)
+....+......+...|++++|...+..+++.+. .+ ..++..+...|...|++++|...|++... .. +
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4455666777788899999999999999998853 23 35788889999999999999998876311 11 1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
...+|..+...|...|++++|...|++..+-
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------------------------------- 116 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI------------------------------------------------- 116 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------------------------------
Confidence 3557888899999999999999998776421
Q ss_pred HHHHHHHHhhcCc--CChhHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CCCCC-HHH
Q 048812 340 IELAYDLFSEISE--KNVYLWTSVIAAYAMAGH--------------------AQKAIDLFLEMEET----GTKPD-QVT 392 (645)
Q Consensus 340 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~~----g~~pd-~~t 392 (645)
+..... ....+|..+...|...|+ +++|+..+++.... +..|. ..+
T Consensus 117 -------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 189 (406)
T 3sf4_A 117 -------SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189 (406)
T ss_dssp -------HHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 111001 113467788888888999 99999998886542 21222 356
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHH
Q 048812 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFITSM----PIPPD----VSI 460 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd----~~~ 460 (645)
+..+...+...|++++|.+++++..+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..+
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 778888999999999999999988753222222 347889999999999999999998875 11122 557
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLN------DGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999865432 45788999999999999999999998755
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-11 Score=121.94 Aligned_cols=166 Identities=16% Similarity=0.071 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHH
Q 048812 356 YLWTSVIAAYAMAGH--------------------AQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHGGLVDEGY 410 (645)
Q Consensus 356 ~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~ 410 (645)
.+|..+...|...|+ +++|+..+++.... +..|. ..++..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 356666677777777 78888877775432 21222 346677777888889999999
Q ss_pred HHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHH
Q 048812 411 DFLSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFITSM----PIPPD----VSIWSSLLRACRCHQNVKLAE 478 (645)
Q Consensus 411 ~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd----~~~~~~ll~a~~~~g~~~~a~ 478 (645)
+++++..+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888887643211122 347788888899999999999888775 11122 557788888899999999999
Q ss_pred HHHHHHHhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 479 HAFKHLTETDPLN------DGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 479 ~~~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
..++++++..|.. ..++..++.+|...|++++|...+++..+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999998865432 347778999999999999999999988764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=128.76 Aligned_cols=369 Identities=9% Similarity=-0.020 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCCh---HHHHHHHhhCCCCCcccHHHHHHHHHHcC-----ChhHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDL---GYAQQIIRQGDEPEIKIWNSIIENQLING-----YPQEV 123 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~A 123 (645)
+++++|.+++..+.+.| ++..+..|-.+|...|+. ++|...|++..+.+...+..+...+...+ ++++|
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 78999999999998887 455566677778888888 89999999887667778888877565554 44555
Q ss_pred HHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChH---HHHHHHHHHhhCCCCCChhhHHHHH
Q 048812 124 FAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR---EGLGLLSKMGAEGVSPDEVTMVSLI 200 (645)
Q Consensus 124 ~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll 200 (645)
+..|++... .-+..++..|...|...+..+ ++++.+......| +......+.
T Consensus 94 ~~~~~~Aa~----------------------~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 94 ESLLKKAFA----------------------NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHHHH----------------------TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHHHH----------------------CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 555554432 124457777777777665543 3455555555444 334555566
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC---CHHHHHHHHcccCCCC-CChhhHHHHHHHHHhc--
Q 048812 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG---KIGEAQKLLGRYEIDE-VDVVLWTTLVSGYVKS-- 274 (645)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~~~-~~~~~~~~li~~~~~~-- 274 (645)
..+...+.++.+........+.-...++..+..|..+|.+.| +.++|.+.|+.....+ ++...+..|...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 666666655544444333333322344447888888999999 8888998888732222 3445556677766544
Q ss_pred --CCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc
Q 048812 275 --NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352 (645)
Q Consensus 275 --g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~ 352 (645)
+++++|++.|++.. |+
T Consensus 229 ~~~d~~~A~~~~~~aa-~g------------------------------------------------------------- 246 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG------------------------------------------------------------- 246 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG-------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHc-CC-------------------------------------------------------------
Confidence 67888888887765 43
Q ss_pred CChhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCC
Q 048812 353 KNVYLWTSVIAA-Y--AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG-----LVDEGYDFLSKKSRVYNIKP 424 (645)
Q Consensus 353 ~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p 424 (645)
+...+..+... | ...|++++|+.+|++..+.| +...+..+...|. .| +.++|.++|++.. .-
T Consensus 247 -~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g 316 (452)
T 3e4b_A 247 -YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GR 316 (452)
T ss_dssp -STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TT
T ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CC
Confidence 23344445444 2 34788888988888888766 5556666666665 44 8888888887655 33
Q ss_pred ChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 425 KMQHYGCMVDLLGR----AGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 425 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
+...+..|..+|.. ..++++|.++|++.--.-+......|...|.. .+|.++|...+++..+.++.......
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l 396 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLA 396 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56667777777765 34889999998886323344455566666653 46899999999999988764433222
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+......++.++|.++.++-++
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 222222233455666666665443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=106.49 Aligned_cols=165 Identities=12% Similarity=0.074 Sum_probs=146.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
.+...|..+...|...|++++|++.|++..+. .| +..++..+..++...|++++|...+...... .| +...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 77 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYY 77 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHH
Confidence 36778999999999999999999999999885 44 5778889999999999999999999998853 44 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
.+...+...+++++|.+.+.+. ... .+...|..+...+...|++++|+..++++++++|.++.+|..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8888999999999999999886 333 36778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 048812 509 DDMSRIRMKLRDMG 522 (645)
Q Consensus 509 ~~a~~~~~~m~~~~ 522 (645)
++|.+.+++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.6e-12 Score=132.54 Aligned_cols=209 Identities=10% Similarity=0.027 Sum_probs=176.7
Q ss_pred HHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCH-HHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchh
Q 048812 244 IGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNER-DEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321 (645)
Q Consensus 244 ~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~ 321 (645)
++++...++......+ +...|..+...|...|++ ++|++.|++..+.+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~------------------------------ 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE------------------------------ 133 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC------------------------------
Confidence 4555555554323333 677888889999999999 99999988765332
Q ss_pred hHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048812 322 HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401 (645)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 401 (645)
..+...|..+...|...|++++|++.|++..+. .|+...+..+..++.
T Consensus 134 ------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 134 ------------------------------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLR 181 (474)
T ss_dssp ------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHT
T ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHH
Confidence 235678899999999999999999999999874 588888899999999
Q ss_pred cc---------CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC----CH
Q 048812 402 HG---------GLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRA--------GHLEESANFITSM-PIPP----DV 458 (645)
Q Consensus 402 ~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p----d~ 458 (645)
.. |++++|.+.|++..+ +.| +...|..+..+|... |++++|.+.|++. ...| +.
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 258 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH
Confidence 99 999999999999985 355 478899999999999 9999999999987 4445 78
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
..|..+..++...|++++|...|+++++++|+++.++..+..++...|++++|.+.+.+
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999875543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.1e-11 Score=129.89 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=148.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGC 431 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 431 (645)
+..+|+.|...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|.+.|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 4678999999999999999999999999985 555 78899999999999999999999999985 5675 789999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCch
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~ 509 (645)
+..+|.+.|++++|.+.+++. .+.| +...|..|..++...|++++|+..|+++++++|+++.+|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999986 4555 57799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048812 510 DMSRIRMKLRD 520 (645)
Q Consensus 510 ~a~~~~~~m~~ 520 (645)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=121.47 Aligned_cols=242 Identities=13% Similarity=0.134 Sum_probs=158.3
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCC--------CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHH
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEI--------DEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ 297 (645)
+..++..+...|...|++++|..+|++... ..+ ...+|..+...|...|++++|...|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------- 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 345566666677777777777776665322 111 3456777777788888888888877664311
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
+.+.+..-......+|..+...|...|++++|+..
T Consensus 99 ---------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 133 (311)
T 3nf1_A 99 ---------------------------------------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL 133 (311)
T ss_dssp ---------------------------------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ---------------------------------------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 00000000012346788889999999999999999
Q ss_pred HHHHHHc------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHHHcCCHHH
Q 048812 378 FLEMEET------GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVY-----NIKP-KMQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 378 ~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~ 444 (645)
|++..+. +..|+ ..++..+...+...|++++|.++++++.+.. +..| ....+..+...|.+.|++++
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 213 (311)
T 3nf1_A 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQ 213 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9998764 33343 4567788889999999999999999887531 1133 25678889999999999999
Q ss_pred HHHHHHhCC----------CCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 445 SANFITSMP----------IPPD-------VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 445 A~~~~~~m~----------~~pd-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
|.+.++++- ..+. ...+..+...+...+.+.++...+++.....|..+.++..++.+|...|+
T Consensus 214 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 293 (311)
T 3nf1_A 214 AETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC
Confidence 999988761 1111 12233334445556677778888888888888888899999999999999
Q ss_pred chHHHHHHHHHHh
Q 048812 508 LDDMSRIRMKLRD 520 (645)
Q Consensus 508 ~~~a~~~~~~m~~ 520 (645)
+++|.+.+++..+
T Consensus 294 ~~~A~~~~~~al~ 306 (311)
T 3nf1_A 294 FEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-09 Score=108.87 Aligned_cols=218 Identities=7% Similarity=0.000 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------HcCCH-------HHHHHHHcccCC-CCC-ChhhHHHHHHHHHh
Q 048812 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYF-------KCGKI-------GEAQKLLGRYEI-DEV-DVVLWTTLVSGYVK 273 (645)
Q Consensus 210 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~m~~-~~~-~~~~~~~li~~~~~ 273 (645)
+.|..+|+.+++.. +.+..+|..++..+. +.|++ ++|..+|++... ..| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666666653 445666666666554 34664 788888877544 244 55678888888888
Q ss_pred cCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcC
Q 048812 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353 (645)
Q Consensus 274 ~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~ 353 (645)
.|++++|.++|++..+.+. .
T Consensus 112 ~~~~~~A~~~~~~al~~~p------------------------------------------------------------~ 131 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED------------------------------------------------------------I 131 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS------------------------------------------------------------S
T ss_pred cCCHHHHHHHHHHHHhccc------------------------------------------------------------c
Confidence 8888888888877654221 1
Q ss_pred Chh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 354 NVY-LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC-SHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 354 ~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
+.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.++|+...+. .| +...|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 207 (308)
T 2ond_A 132 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVL 207 (308)
T ss_dssp CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHH
T ss_pred CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 232 67788888888888888888888888753 23344444333332 2368899999999888753 34 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSM-P---IPP--DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~---~~p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.+++.+.+.|++++|..+|++. . ++| ....|..++......|+.+.|..+++++++..|+++
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 8888888889999999888876 2 354 466888888888889999999999999999888754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.9e-10 Score=109.58 Aligned_cols=232 Identities=9% Similarity=-0.025 Sum_probs=164.2
Q ss_pred chHHHHHHHHHhc----CCh----HHHHHHHHHHhhCCCCCChhhHHHHHHHHh-------cCCCh-------HHHHHHH
Q 048812 159 ISWNTMISCYTSM----GMY----REGLGLLSKMGAEGVSPDEVTMVSLISART-------KLRDL-------EMGKNLH 216 (645)
Q Consensus 159 ~~~n~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~ 216 (645)
..|...+.--.++ ++. ++|+.+|++.+... +-+...|..+...+. ..|++ ++|..++
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 3455555544333 232 67888888887752 234556666666554 35776 8899999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHhcccCCchh
Q 048812 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD-VV-LWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294 (645)
Q Consensus 217 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t 294 (645)
+..++.-.+.+...|..++..+.+.|++++|..+|++.....|+ .. .|..++..+.+.|++++|..+|++..+.+.
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-- 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-- 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--
Confidence 99887322446678888999999999999999999886555553 43 799999999999999999999988764322
Q ss_pred HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHH-HHcCCHHH
Q 048812 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY-AMAGHAQK 373 (645)
Q Consensus 295 ~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~-~~~g~~~~ 373 (645)
.+...|....... ...|+.++
T Consensus 166 ----------------------------------------------------------~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 166 ----------------------------------------------------------TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp ----------------------------------------------------------CCTHHHHHHHHHHHHTSCCHHH
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHHcCCHHH
Confidence 1222233222221 12688899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 048812 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITS 451 (645)
Q Consensus 374 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (645)
|..+|++..+.. +-+...+..++..+...|++++|..+|+...+...+.|+ ...|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998887652 225677788888888889999999999888853234553 56788888888889999999888877
Q ss_pred C
Q 048812 452 M 452 (645)
Q Consensus 452 m 452 (645)
+
T Consensus 267 a 267 (308)
T 2ond_A 267 R 267 (308)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-10 Score=117.25 Aligned_cols=296 Identities=12% Similarity=0.092 Sum_probs=198.7
Q ss_pred HHhcCChHHHHHHHHHHhhC--CCCCChh--hHHHHHHHH--hcCCChHHHH-----------HHHHHHHHhCCCCch--
Q 048812 168 YTSMGMYREGLGLLSKMGAE--GVSPDEV--TMVSLISAR--TKLRDLEMGK-----------NLHLFLEESTMKISG-- 228 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~--t~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~g~~~~~-- 228 (645)
+.+.+++++|..++++..+. .++.|.. .|-.++..- ...++++.+. +.+..+.....+.+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34578888888888887553 2323332 333333321 1122333333 555555433211111
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHcccCCC---CC----ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHH
Q 048812 229 --SLLNYLVDMYFKCGKIGEAQKLLGRYEID---EV----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299 (645)
Q Consensus 229 --~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll 299 (645)
..+......|...|++++|...|++.... .+ ...+|..+...|...|++++|+..+++..
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al----------- 170 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY----------- 170 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------
Confidence 12223566778899999999999874221 12 34678889999999999999999887654
Q ss_pred HhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHH
Q 048812 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAID 376 (645)
Q Consensus 300 ~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 376 (645)
+++..... ....+++.+...|...|++++|+.
T Consensus 171 ---------------------------------------------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 205 (383)
T 3ulq_A 171 ---------------------------------------------EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS 205 (383)
T ss_dssp ---------------------------------------------HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------------------------------HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 22222211 124568888999999999999999
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHHcCCHHHHHH
Q 048812 377 LFLEMEETGT-KPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVY---NIKP-KMQHYGCMVDLLGRAGHLEESAN 447 (645)
Q Consensus 377 l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~ 447 (645)
.|++..+... .++ ..++..+...+...|++++|.+++++..+.. +..| ...++..+...|.+.|++++|.+
T Consensus 206 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9998775311 122 2478888889999999999999999887421 2223 36778899999999999999999
Q ss_pred HHHhC-C---C--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 448 FITSM-P---I--PPD-VSIWSSLLRACRCHQN---VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 448 ~~~~m-~---~--~pd-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
.+++. . . .|. ...+..+...+...|+ .++|...+++. ...|.....+..|+.+|...|++++|...+++
T Consensus 286 ~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 286 YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 98875 1 1 122 2335667777888888 77777777766 23344456788899999999999999999998
Q ss_pred HHh
Q 048812 518 LRD 520 (645)
Q Consensus 518 m~~ 520 (645)
..+
T Consensus 365 al~ 367 (383)
T 3ulq_A 365 VEQ 367 (383)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-10 Score=119.18 Aligned_cols=135 Identities=10% Similarity=-0.034 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----Ch
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KM 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~ 426 (645)
.+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.+++++..+...-.. ..
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4677778888888888888888888765311 112 23677777888888888888888887764321111 15
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-------PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
..+..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 67788888899999999999888775 1111 1447788888999999999999999999997763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.4e-10 Score=101.48 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=142.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+...|..+...|.+.|++++|++.|++..+.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------ 35 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------------------------------------------------ 35 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 56678888888999999999999888765433
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
+.+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...+...++++.+.+.+.+..+
T Consensus 36 ------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~- 101 (184)
T 3vtx_A 36 ------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIA- 101 (184)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 2366788899999999999999999999998763 33567777778889999999999999999885
Q ss_pred cCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 420 YNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 420 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+.| +...+..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..|+++++++|+++
T Consensus 102 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 102 --LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred --hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 345 4778899999999999999999999887 3344 678899999999999999999999999999999763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-11 Score=118.58 Aligned_cols=256 Identities=12% Similarity=0.047 Sum_probs=138.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAE-------GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 229 (645)
+..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+..+++..-
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----- 100 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE----- 100 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Confidence 3567889999999999999999999998762 1122234566666677777777777777766654310
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCch
Q 048812 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~ 309 (645)
+.+.. .......+|..+...|...|++++|.+.|++..+..
T Consensus 101 -------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------------ 141 (311)
T 3nf1_A 101 -------------------KTLGK--DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------------------ 141 (311)
T ss_dssp -------------------HHHCT--TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH------------------
T ss_pred -------------------HHhCC--CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH------------------
Confidence 00000 000122334444444444555555554444332100
Q ss_pred hhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 048812 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----- 384 (645)
Q Consensus 310 ~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 384 (645)
.+.+..-......+|..+...|...|++++|++.|+++.+.
T Consensus 142 ----------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 142 ----------------------------------EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp ----------------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred ----------------------------------HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 00000000112344566666677777777777777766553
Q ss_pred -CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-------hHHHHHHHHHHHHcCCHHHHHHHH
Q 048812 385 -GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVY------NIKPK-------MQHYGCMVDLLGRAGHLEESANFI 449 (645)
Q Consensus 385 -g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~ 449 (645)
+..|+ ..++..+...+...|++++|.++++++.+.. ...|. ...+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 22333 3455666666777777777777776666311 11111 122233334444555666666666
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 450 TSMP-IPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 450 ~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6653 233 4567889999999999999999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-10 Score=100.93 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=143.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...|..+...+...|++++|+..|+++.+. .+.+..++..+...+...|++++|.++++++.+. ...+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 356778888999999999999999998764 2346788888899999999999999999998853 1235788899999
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHH
Q 048812 435 LLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~ 512 (645)
.+...|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999886 2 33477889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 048812 513 RIRMKLRDMG 522 (645)
Q Consensus 513 ~~~~~m~~~~ 522 (645)
+.+++..+..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 9999886643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-10 Score=114.24 Aligned_cols=234 Identities=9% Similarity=0.057 Sum_probs=175.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CC-----ChhhHH
Q 048812 199 LISARTKLRDLEMGKNLHLFLEES----TMKI-SGSLLNYLVDMYFKCGKIGEAQKLLGRYEID---EV-----DVVLWT 265 (645)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~-----~~~~~~ 265 (645)
....+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...+++.... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567889999999999998764 2111 3467888899999999999988887763110 11 245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHH
Q 048812 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345 (645)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~ 345 (645)
.+...|...|++++|++.|++..+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~-------------------------------------------------------- 212 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYS-------------------------------------------------------- 212 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH--------------------------------------------------------
Confidence 899999999999999998876542
Q ss_pred HHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 346 LFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 346 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
++..... ....+|+.+...|...|++++|+..|++..+. +..|+ ..++..+...+...|++++|.+++++..+
T Consensus 213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111111 11346788999999999999999999998762 33243 67788888999999999999999998875
Q ss_pred hcCCCCC---hHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 419 VYNIKPK---MQHYGCMVDLLGRAGH---LEESANFITSMPIPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 419 ~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
...-.++ ...+..+...|...|+ +++|..++++.+..|+. ..+..|...|...|++++|...+++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 293 YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3211112 3346778888889999 99999999999665543 467788888999999999999999998854
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-10 Score=117.99 Aligned_cols=213 Identities=12% Similarity=0.028 Sum_probs=174.7
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 048812 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL-EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 251 (645)
.+++++..+.+..... +.+...+..+..++...|++ ++|.+.+..+++.. +.+...+..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567777777766542 23566788888889999999 99999999998876 556788999999999999999999999
Q ss_pred cccCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 252 GRYEIDEVDVVLWTTLVSGYVKS---------NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 252 ~~m~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
++.....|+...|..+...|... |++++|++.|++..+.+
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------- 209 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD------------------------------- 209 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------------------------------
Confidence 98666678888889999999998 89999999888765322
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCC----CH
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA--------GHAQKAIDLFLEMEETGTKP----DQ 390 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p----d~ 390 (645)
..+...|..+..+|... |++++|+..|++..+. .| +.
T Consensus 210 -----------------------------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 258 (474)
T 4abn_A 210 -----------------------------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNP 258 (474)
T ss_dssp -----------------------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCH
T ss_pred -----------------------------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCH
Confidence 23567788888888888 8999999999999885 45 68
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 391 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
..+..+..++...|++++|.+.|++..+ +.|+ ...+..+..++...|++++|.+.+.++
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999885 3554 667888888899999999988877665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-10 Score=113.10 Aligned_cols=272 Identities=14% Similarity=0.011 Sum_probs=169.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHhcCCChHHHHHHHHHHHHh----CC-CCchhH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-----EVTMVSLISARTKLRDLEMGKNLHLFLEES----TM-KISGSL 230 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~ 230 (645)
+......+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|.+.+..+++. +. +....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3344455555666666666666655542 22 234445555555666666666655554432 11 112445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCC---CCC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEID---EVD----VVLWTTLVSGYVKSNE--------------------RDEARRL 283 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 283 (645)
+..+...|...|++++|...|++.... .++ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 566667777777777777666652110 111 3366677777777777 6666666
Q ss_pred HHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhHHHHH
Q 048812 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTSV 361 (645)
Q Consensus 284 ~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~l 361 (645)
+++.. .++..... ....+|..+
T Consensus 166 ~~~a~--------------------------------------------------------~~~~~~~~~~~~~~~~~~l 189 (338)
T 3ro2_A 166 YEENL--------------------------------------------------------SLVTALGDRAAQGRAFGNL 189 (338)
T ss_dssp HHHHH--------------------------------------------------------HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHH--------------------------------------------------------HHHHhcCCHHHHHHHHHHH
Confidence 55432 11111111 123467778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGT-KPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCM 432 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 432 (645)
...|...|++++|+..+++..+... .++ ..++..+...+...|++++|.+++++..+...-.++ ...+..+
T Consensus 190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (338)
T 3ro2_A 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 8888889999999999888764310 111 236777778888899999999988887643211122 5677888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 433 VDLLGRAGHLEESANFITSM-P---IPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~---~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88999999999999888775 1 1112 447788888999999999999999999987664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-08 Score=101.92 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH--
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTK--P--DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG-- 430 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 430 (645)
.+..+...|...|++++|...+++....... | ...++..+...+...|++++|..++++......-......+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4555666777778888888777776653221 1 134566666677777888888887777664211111111111
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhH
Q 048812 431 ---CMVDLLGRAGHLEESANFITSMP-IPPD-----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL------NDGAH 495 (645)
Q Consensus 431 ---~li~~~~~~g~~~~A~~~~~~m~-~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------~~~~y 495 (645)
..+..+...|++++|...+++.. ..|. ...+..+...+...|++++|...++++++..+. ....+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 23344678888888888887762 2221 234667777788889999999988888774322 11366
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+..+|...|+.++|...+++..+
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6788888899999999988887754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-09 Score=104.03 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=133.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 431 (645)
.|...|......+...|++++|+..|++..+....++...+..+..++...|++++|.+.|++..+ ..|+ ...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 456788889999999999999999999999875447888888888999999999999999999885 4664 678899
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DV-------SIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLAN 500 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~ 500 (645)
+...|...|++++|.+.+++. ...| +. .+|..+...+...|++++|+..++++++++|+ ++..+..++.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999886 3334 34 45888888899999999999999999999999 8899999999
Q ss_pred HHHHcCCc
Q 048812 501 IYAKAGRL 508 (645)
Q Consensus 501 ~~~~~g~~ 508 (645)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988887
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-09 Score=96.80 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.++++++.+. ...+...+..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 118 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGV 118 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHH
Confidence 3445555566666666666666666665541 224555555666666666666666666666542 1224556666666
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 435 LLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.+...|++++|.+.+++. . .+.+..+|..+...+...|++++|...++++++..|+++..
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 777777777777776665 2 22356778888888888999999999999998888876543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-07 Score=103.54 Aligned_cols=133 Identities=9% Similarity=-0.001 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEET-G-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
.|-..+....+.|..+.|..+|.+..+. + ..+......+.+.- ...++.+.|.++|+...+.++ -+...+...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFA--TDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHH
Confidence 5666666666677777777777777654 2 12222222222221 123447777777777775432 23445566677
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 435 LLGRAGHLEESANFITSM-PIPP----DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 777777777777777765 2222 234677777777777777777777777777777653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.4e-09 Score=106.03 Aligned_cols=302 Identities=13% Similarity=0.099 Sum_probs=196.8
Q ss_pred HHHHHHH--HhcCChHHHHHHHHHHhhC--CCCCCh--hhHHHHHHHH--hcCCChHHHH---------HHHHHHHHhCC
Q 048812 162 NTMISCY--TSMGMYREGLGLLSKMGAE--GVSPDE--VTMVSLISAR--TKLRDLEMGK---------NLHLFLEESTM 224 (645)
Q Consensus 162 n~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~--~t~~~ll~~~--~~~~~~~~a~---------~~~~~~~~~g~ 224 (645)
+.|-.-| ...+++++|..++++.... .++.|. ..|-.++..- ...+++.... +.++.+.....
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 93 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK 93 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence 3333444 6788899999988876542 222232 2334443321 1112222222 55555443221
Q ss_pred CCch----hHHHHHHHHHHHcCCHHHHHHHHcccCCC---CC----ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCch
Q 048812 225 KISG----SLLNYLVDMYFKCGKIGEAQKLLGRYEID---EV----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293 (645)
Q Consensus 225 ~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 293 (645)
+.+. ..+......+...|++++|...|++.... .+ ...++..+...|...|++++|+..+++..
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al----- 168 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL----- 168 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-----
Confidence 1111 12233455677899999999999874221 12 24578888999999999999999887653
Q ss_pred hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCC
Q 048812 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGH 370 (645)
Q Consensus 294 t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 370 (645)
+++..... ....+++.+...|...|+
T Consensus 169 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 197 (378)
T 3q15_A 169 ---------------------------------------------------DIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197 (378)
T ss_dssp ---------------------------------------------------HHHHTSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------------------------HHHHhCCCchhhHHHHHHHHHHHHHHhCC
Confidence 22222211 124578889999999999
Q ss_pred HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHHHcCCH
Q 048812 371 AQKAIDLFLEMEET----GTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVY---NIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 371 ~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~ 442 (645)
+++|++.|++..+. +..+ ...++..+..++...|++++|.++|++..+.. +......++..+...|.+.|++
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence 99999999987653 1111 13567788889999999999999999887411 2222367788899999999999
Q ss_pred HHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHH
Q 048812 443 EESANFITSM----PI--PPD-VSIWSSLLRACRCHQN---VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512 (645)
Q Consensus 443 ~~A~~~~~~m----~~--~pd-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~ 512 (645)
++|.+.+++. +. .|. ...+..+...+...++ +++|...+++. ...|.....+..++..|...|++++|.
T Consensus 278 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~ 356 (378)
T 3q15_A 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAA 356 (378)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999875 11 222 3345555555667777 77777777762 222334457778999999999999999
Q ss_pred HHHHHHHh
Q 048812 513 RIRMKLRD 520 (645)
Q Consensus 513 ~~~~~m~~ 520 (645)
..+++..+
T Consensus 357 ~~~~~al~ 364 (378)
T 3q15_A 357 AFYRKVLK 364 (378)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-09 Score=99.02 Aligned_cols=142 Identities=12% Similarity=-0.006 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h-------
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-M------- 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~------- 426 (645)
..|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|.+.+++..+. .|+ .
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~ 117 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYA 117 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHH
Confidence 33444555555555566666555555542 333 344555555555555666665555555532 232 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCh---------------------------H
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIPPD---VSIWSSLLRACRCHQNV---------------------------K 475 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd---~~~~~~ll~a~~~~g~~---------------------------~ 475 (645)
..|..+...+...|++++|.+.+++. ...|+ ...|..+...+...|+. +
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFK 197 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33455555555555666666555554 34443 23445555555444443 8
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
+|...++++++++|+++.+...+..+.
T Consensus 198 ~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 198 KAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888888888888888876666655543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-09 Score=106.77 Aligned_cols=132 Identities=8% Similarity=0.134 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK---MQH 428 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 428 (645)
.+++.+...|...|++++|+..|++..+. +.+....++..+...+...|+.++|..++++..+...-.++ ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45677778888888888888888877651 22223566777778888888888888888887753322112 345
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 429 YGCMVDLLGRAGH---LEESANFITSMPIPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 429 ~~~li~~~~~~g~---~~~A~~~~~~m~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
+..+...|...|+ +++|...+++.+..|+. ..+..+...|...|++++|...++++++.
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5666666777777 88888888887554443 35667778888999999999999888763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.6e-09 Score=101.80 Aligned_cols=182 Identities=14% Similarity=0.162 Sum_probs=145.3
Q ss_pred cHHHHHHHHhhcCcC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCcHH
Q 048812 339 NIELAYDLFSEISEK----NVYLWTSVIAAYAMAGHAQKAIDLFLEMEET------GTKPD-QVTFIALLSACSHGGLVD 407 (645)
Q Consensus 339 ~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~ 407 (645)
.+++|.+++.....+ ...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|+++
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 456667777665433 3567899999999999999999999998764 33343 567888899999999999
Q ss_pred HHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC--------CC-CHHHHHHHHHHHHhc
Q 048812 408 EGYDFLSKKSRVY-----NIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI--------PP-DVSIWSSLLRACRCH 471 (645)
Q Consensus 408 ~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--------~p-d~~~~~~ll~a~~~~ 471 (645)
+|.++++++.+.. .-.| ....+..+...|...|++++|.+.+++. .. .| ...++..+...+...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999888532 1123 3678889999999999999999998876 21 33 345788899999999
Q ss_pred CChHHHHHHHHHHHhcC-------------------------------------------------CCCchhHHHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETD-------------------------------------------------PLNDGAHVLLANIY 502 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~-------------------------------------------------p~~~~~y~~l~~~~ 502 (645)
|++++|...+++++++. |..+.++..++.+|
T Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 262 (283)
T 3edt_B 183 GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY 262 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999998751 33345678899999
Q ss_pred HHcCCchHHHHHHHHHHh
Q 048812 503 AKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~ 520 (645)
...|++++|..++++..+
T Consensus 263 ~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 263 RRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-08 Score=96.63 Aligned_cols=191 Identities=12% Similarity=0.013 Sum_probs=150.4
Q ss_pred cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h
Q 048812 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-M 426 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 426 (645)
..+...+-.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++...|++++|...|+...+.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456777788888999999999999999998753 33 567888888999999999999999999975433333 4
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCChHHHHH
Q 048812 427 QHYGCMVDLLGR--------AGHLEESANFITSM-PIPPD-VSIW-----------------SSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 427 ~~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~pd-~~~~-----------------~~ll~a~~~~g~~~~a~~ 479 (645)
..+..+...+.. .|++++|...|++. ...|+ ...+ ..+...+...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 667788888888 99999999999886 22232 2233 456777999999999999
Q ss_pred HHHHHHhcCCCCc---hhHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCC
Q 048812 480 AFKHLTETDPLND---GAHVLLANIYAKA----------GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546 (645)
Q Consensus 480 ~~~~~~~~~p~~~---~~y~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~ 546 (645)
.++++++..|+++ ..+..++.+|... |++++|...++++.+.. |
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p------------------- 226 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P------------------- 226 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-------------------
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-------------------
Confidence 9999999999853 5788899999877 89999999999987633 1
Q ss_pred CCcChHHHHHHHHHHHHHHHH
Q 048812 547 FNPHSEEIYLMLNEIEMTLQQ 567 (645)
Q Consensus 547 ~~~~~~~~~~~l~~l~~~m~~ 567 (645)
.+|...++...+.++..++.+
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 355567777777777776654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-08 Score=98.16 Aligned_cols=164 Identities=10% Similarity=0.040 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC---
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHG-GLVDEGYDFLSKKSRVYNIKPK--- 425 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~--- 425 (645)
..+|+.+...|...|++++|+..|++..+. |-.+. ..++..+...|... |++++|...|++..+...-..+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 457888999999999999999999987653 11111 35788888899986 9999999999988853211111
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh-
Q 048812 426 -MQHYGCMVDLLGRAGHLEESANFITSM-PIPP---DV-----SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA- 494 (645)
Q Consensus 426 -~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---d~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~- 494 (645)
..++..+...|.+.|++++|.+.+++. ...| +. ..|..+..++...|+++.|...+++.++++|.....
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 456888999999999999999999886 2222 21 156777888999999999999999999999976543
Q ss_pred ----HHHHHHHHH--HcCCchHHHHHHHHH
Q 048812 495 ----HVLLANIYA--KAGRLDDMSRIRMKL 518 (645)
Q Consensus 495 ----y~~l~~~~~--~~g~~~~a~~~~~~m 518 (645)
+..+...|. ..+++++|...++.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334556664 456677777777544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.8e-09 Score=115.46 Aligned_cols=165 Identities=12% Similarity=0.125 Sum_probs=142.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+..+|+.|...|.+.|++++|++.|++..+-+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~------------------------------------------------ 39 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF------------------------------------------------ 39 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 46678889999999999999999988765322
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
..+..+|+.+...|.+.|++++|++.|++..+. .|+ ...|..+..++...|++++|.+.|++..+
T Consensus 40 ------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 40 ------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp ------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 235678899999999999999999999999885 555 78899999999999999999999999885
Q ss_pred hcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 419 VYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 419 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..|..++...|++++|.+.+++++++.|
T Consensus 106 ---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 106 ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 5675 788999999999999999999999986 5556 567899999999999999999999999988543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=8e-08 Score=94.78 Aligned_cols=135 Identities=15% Similarity=0.015 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----
Q 048812 357 LWTSVIAAYAMA-GHAQKAIDLFLEMEETGTK-PD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM---- 426 (645)
Q Consensus 357 ~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---- 426 (645)
+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|..+|++..+...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 456666677775 7777777777776542100 01 2456666777777777777777777776421111111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCC
Q 048812 427 -QHYGCMVDLLGRAGHLEESANFITSM-PIPPDVS------IWSSLLRACR--CHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 427 -~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~------~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|...|+++..++|..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 14566667777777777777777775 3344321 3444555554 3456777777777777776654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-08 Score=94.32 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------C
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEET------GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVY------N 421 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~ 421 (645)
..+|..+...|...|++++|+..|++..+. +..|+ ..++..+...+...|++++|.++++++.+.. .
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 206 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGS 206 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777777777777777777776653 11332 4566667777777777777777777766421 1
Q ss_pred CCCC-hHHHHHHHHHHHHc------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 422 IKPK-MQHYGCMVDLLGRA------GHLEESANFITSMP-IPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 422 ~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
..+. ...+..+...+... ..+.++...++... ..| ...++..+...+...|++++|...++++++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 207 VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1222 22333333333222 23455555555553 223 3457888888899999999999999998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-06 Score=93.31 Aligned_cols=169 Identities=8% Similarity=0.003 Sum_probs=117.5
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHhccCcHHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG---------TKPD------------QVTFIALLSACSHGGLVDEGYD 411 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~pd------------~~t~~~ll~a~~~~g~~~~a~~ 411 (645)
.+...|-..+...-+.|++++|.++|+++.... -.|+ ...|...+....+.|.++.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 355667778888888888888888888887641 0132 2356666777777788888888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAG-HLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
+|..+.+..+ .+....|...+.+-.+.| +.+.|.++|+.. .++-+...|...+.-....|+.+.|..+|++++...
T Consensus 456 vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 8888875311 112334433333334444 488888888776 233466677788887778888888888888888877
Q ss_pred CC---CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 489 PL---NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 489 p~---~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|+ ....|...+..-.+.|..+.+.++.+++.+.-
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 63 34567777777788888888888888887754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-06 Score=88.99 Aligned_cols=221 Identities=15% Similarity=0.028 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCChh----hhhhHHHHHHhcCChHHHHHHHhhCC-----CCCc----ccHHHHHHHHHHcC
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQ----ISTQVFEFLVFTGDLGYAQQIIRQGD-----EPEI----KIWNSIIENQLING 118 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~~~~A~~~f~~~~-----~~~~----~~~~~li~~~~~~g 118 (645)
++++.+...+...+......+.. +++.+...|...|++++|...+++.. ..+. .+++.+...+...|
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 88999999998887764222222 45666778888999999999998754 1222 23566777888889
Q ss_pred ChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--C-
Q 048812 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS--P- 191 (645)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~----~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--p- 191 (645)
++++|+..+++.. .+......+ ...+++.+...|...|++++|...+++....... +
T Consensus 108 ~~~~A~~~~~~al----------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 108 FLQTAWETQEKAF----------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp CHHHHHHHHHHHH----------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred CHHHHHHHHHHHH----------------HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 9998888887643 333333322 2345677888999999999999999998754221 1
Q ss_pred -ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHHcCCHHHHHHHHcccCCCCCC----
Q 048812 192 -DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG-SLLN-----YLVDMYFKCGKIGEAQKLLGRYEIDEVD---- 260 (645)
Q Consensus 192 -~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~y~~~g~~~~A~~~~~~m~~~~~~---- 260 (645)
...++..+...+...|++++|...+.......-.++. ..+. ..+..+...|++++|...+++.....+.
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 1245777778888999999999999988765322211 1111 3345588999999999999985433332
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 261 -VVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 261 -~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
...+..+...+...|++++|...+++..
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2246778888999999999999988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.5e-08 Score=81.40 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 436 (645)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++++.+. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45666777777777777777777776642 224555666666666666666666666665532 12
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 048812 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2334455555555566666666666666666666555566666666666666666666666
Q ss_pred HHHh
Q 048812 517 KLRD 520 (645)
Q Consensus 517 ~m~~ 520 (645)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-07 Score=87.58 Aligned_cols=169 Identities=9% Similarity=-0.026 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-QHYGC 431 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 431 (645)
...+..+...+...|++++|+..|+++.+.... |. ...+..+..++...|++++|...|+++.+.+.-.|.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345566677788889999999999998875321 21 3567777888889999999999999888654333332 23444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCh
Q 048812 432 MVDLLGR------------------AGHLEESANFITSM-PIPPDV-SIW-----------------SSLLRACRCHQNV 474 (645)
Q Consensus 432 li~~~~~------------------~g~~~~A~~~~~~m-~~~pd~-~~~-----------------~~ll~a~~~~g~~ 474 (645)
+...+.+ .|++++|...|+++ ...|+. ..+ ..+...+...|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 4444443 57889999888876 333432 222 2345568889999
Q ss_pred HHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 475 KLAEHAFKHLTETDPLND---GAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 999999999999999876 5688999999999999999999999987653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.85 E-value=8.9e-08 Score=81.30 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 505 (645)
.|..+...+.+.|++++|.++++++ . .+.+...|..+...+...|++++|...++++.+..|.++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667778888888888888888776 2 2346778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048812 506 GRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 506 g~~~~a~~~~~~m~~~~ 522 (645)
|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=91.74 Aligned_cols=154 Identities=12% Similarity=-0.004 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPD-QVTFIALLSACSH--------GGLVDEGYDFLSKKSRVYNIKPK 425 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-~~t~~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~ 425 (645)
..|..+..+|.+.|++++|+..|++..+... .|+ ...+..+..++.. .|++++|...|+++.+.+.-.+.
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 132 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence 3445555666666666666666666665421 112 2344445555555 66666666666666643222221
Q ss_pred hH---------------HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChH
Q 048812 426 MQ---------------HYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCH----------QNVK 475 (645)
Q Consensus 426 ~~---------------~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~----------g~~~ 475 (645)
.. .+..+...|.+.|++++|...+++. ...|+ ...+..+..++... |+++
T Consensus 133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 133 VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 11 1256678899999999999999886 22233 45677778888766 8899
Q ss_pred HHHHHHHHHHhcCCCCchh---HHHHHHHHHHcCCch
Q 048812 476 LAEHAFKHLTETDPLNDGA---HVLLANIYAKAGRLD 509 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~---y~~l~~~~~~~g~~~ 509 (645)
+|...++++++..|+++.. +..+..++...++++
T Consensus 213 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 213 RAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988643 334555554444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-09 Score=93.29 Aligned_cols=140 Identities=5% Similarity=-0.018 Sum_probs=101.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcC
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAG 440 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 440 (645)
..+...|++++|++.+++.... .|+ ...+..+...|...|++++|.+.|++..+ +.| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 3444566777777777766542 333 34455667777788888888888887774 455 4677778888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 441 HLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHA-FKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 441 ~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
++++|...|++. .+.| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888887775 4445 567888888888888888765554 588999999998888888888877774
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=93.45 Aligned_cols=172 Identities=10% Similarity=-0.012 Sum_probs=138.6
Q ss_pred HHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 048812 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420 (645)
Q Consensus 342 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 420 (645)
...+.+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 3334444444456667788888999999999999999999885 44 467888889999999999999999998874
Q ss_pred CCCCChHHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhH
Q 048812 421 NIKPKMQHYGCM-VDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN--DGAH 495 (645)
Q Consensus 421 ~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~y 495 (645)
..|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 35664433332 33366778888888888776 3334 67899999999999999999999999999999987 7899
Q ss_pred HHHHHHHHHcCCchHHHHHHHHH
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
..|+.+|...|+.++|...+++.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999998887764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.80 E-value=7.9e-07 Score=86.51 Aligned_cols=248 Identities=11% Similarity=0.072 Sum_probs=158.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
|+-..-.|++..++.-...+.. ..+ ......+.+++...|++..+ ..-.|.......+ ..|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~l-a~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLY-VQFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHH-HHHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHH-HHHhccc--
Confidence 4445556888888774333221 122 22333455777777766532 1112332233333 2333333
Q ss_pred HHHHHHHcccCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhH
Q 048812 245 GEAQKLLGRYEID-EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323 (645)
Q Consensus 245 ~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g 323 (645)
|...|+++... .++..++..+..++...|++++|++++.+...++..
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~------------------------------ 132 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA------------------------------ 132 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS------------------------------
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------------------------
Confidence 66667664332 355666677888899999999999998876544320
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHH
Q 048812 324 IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-----DQVTFIALLS 398 (645)
Q Consensus 324 ~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~t~~~ll~ 398 (645)
..+...+-.++..|.+.|+.+.|.+.+++|.+. .| +..+...+..
T Consensus 133 ----------------------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 133 ----------------------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp ----------------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred ----------------------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH
Confidence 023455667888999999999999999999874 66 3566666665
Q ss_pred HHh--c--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CC-CHHHHH
Q 048812 399 ACS--H--GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PI----------PP-DVSIWS 462 (645)
Q Consensus 399 a~~--~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p-d~~~~~ 462 (645)
++. . .++.++|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+ .. .| |+.+..
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 532 2 34899999999998753 344333344444788899999999988764 21 24 555665
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.+|......|+ .|.++++++.+..|+++.+
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 66666666776 7889999999999988643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.79 E-value=7.3e-07 Score=86.75 Aligned_cols=165 Identities=10% Similarity=0.040 Sum_probs=130.0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----Ch
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-----KM 426 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~ 426 (645)
++..++..+..++...|++++|++++.+-+..|..+ +...+..++..+.+.|+++.|.+.++.|.+ ..| +-
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d 174 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDN 174 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccch
Confidence 344555678889999999999999999987765423 456777888999999999999999999985 467 34
Q ss_pred HHHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CCCC
Q 048812 427 QHYGCMVDL--LGRAG--HLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET----------DPLN 491 (645)
Q Consensus 427 ~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----------~p~~ 491 (645)
.+..-|..+ ....| ++.+|..+|+++ ...|+..+-..|++++.+.|++++|++.++.+.+. +|++
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 555555555 33334 999999999998 44466444455666899999999999999988876 4888
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 492 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+.+...++.++...|+ +|.++++++++..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 8888888888888887 8999999998754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.9e-08 Score=85.65 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=101.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQN 473 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~ 473 (645)
...+...|++++|+..++.... ..|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3456677899999999987663 4554 455667899999999999999999987 4445 67899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHH-HHHHHh
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI-RMKLRD 520 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~-~~~m~~ 520 (645)
+++|+..|+++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 466654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-07 Score=89.36 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----Ch
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETG---TKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KM 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~ 426 (645)
.+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.+.|++..+.+.-.. ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 467778888999999999999998876431 1122 3567788888888 999999999998875321111 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh----
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PI---PPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA---- 494 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~---- 494 (645)
.++..+...|.+.|++++|.+.+++. .+ .++ ...+..+...+...|++++|...+++.+ +.|.....
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 67888899999999999999998876 11 122 2356667777888899999999999999 88865432
Q ss_pred -HHHHHHHHHHcCCchHHHH
Q 048812 495 -HVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 495 -y~~l~~~~~~~g~~~~a~~ 513 (645)
...++..| ..|+.+.+.+
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHH
Confidence 33455555 5666655554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=103.15 Aligned_cols=168 Identities=14% Similarity=0.019 Sum_probs=140.3
Q ss_pred CCCCcHHHHHHHHhhcC-----------cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048812 335 ISIDNIELAYDLFSEIS-----------EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 403 (645)
+..++.++|.+.|+... ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45568888988888765 3466789999999999999999999999998752 23577888888899999
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 048812 404 GLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 404 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~ 480 (645)
|++++|.+.|++..+ +.| +...|..+..+|.+.|++++ .+.+++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999885 466 47888899999999999999 9888876 3444 677899999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 481 FKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
++++++++|.+..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999877665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-06 Score=82.07 Aligned_cols=171 Identities=10% Similarity=-0.027 Sum_probs=140.7
Q ss_pred HHHHHhhcC-cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 048812 343 AYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG----LVDEGYDFLSKKS 417 (645)
Q Consensus 343 A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 417 (645)
|.+.|.... ..+..++..+...|...+++++|+.+|++..+.| +...+..+-..|.. + +.++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 2578889999999999999999999999998875 56677777777877 6 8999999999987
Q ss_pred HhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 048812 418 RVYNIKPKMQHYGCMVDLLGR----AGHLEESANFITSM-PIPPD---VSIWSSLLRACRC----HQNVKLAEHAFKHLT 485 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~pd---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~ 485 (645)
+ . -+...+..|..+|.. .+++++|.+++++. ...|+ +..+..|...|.. .++.++|...|++..
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4 2 357778888888877 88999999999987 44443 7888899999988 889999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHc-C-----CchHHHHHHHHHHhCC
Q 048812 486 ETDPLNDGAHVLLANIYAKA-G-----RLDDMSRIRMKLRDMG 522 (645)
Q Consensus 486 ~~~p~~~~~y~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 522 (645)
+. |.++..+..|..+|... | ++++|...+++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98 66677899999999865 3 8999999999988776
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.2e-07 Score=82.75 Aligned_cols=159 Identities=7% Similarity=0.007 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
..+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...++...+. .|+...+..+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~ 81 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAK 81 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHH
Confidence 34556777888999999999999987764 34 4677888888999999999999999988753 343333322221
Q ss_pred H-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHcCCch
Q 048812 435 L-LGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN--DGAHVLLANIYAKAGRLD 509 (645)
Q Consensus 435 ~-~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~y~~l~~~~~~~g~~~ 509 (645)
. +...+...+|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.. +..+..++.+|...|+.+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2 22222333456666665 3345 57889999999999999999999999999999875 558999999999999999
Q ss_pred HHHHHHHHHH
Q 048812 510 DMSRIRMKLR 519 (645)
Q Consensus 510 ~a~~~~~~m~ 519 (645)
+|...+++..
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999988754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=100.46 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=124.2
Q ss_pred CcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHH
Q 048812 338 DNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFL 413 (645)
Q Consensus 338 ~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~ 413 (645)
+++++|...|++... .+...|..+...|...|++++|++.|++..+. .| +..++..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 357788888887654 45788999999999999999999999999875 44 4778888999999999999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 048812 414 SKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCH---QNVKLAEHAFKHLTET 487 (645)
Q Consensus 414 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~ 487 (645)
++..+ +.| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99885 345 4788999999999999999999999886 3334 577889999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 048812 488 DPLNDGAHVLLA 499 (645)
Q Consensus 488 ~p~~~~~y~~l~ 499 (645)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.2e-07 Score=82.93 Aligned_cols=128 Identities=10% Similarity=0.025 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDL 435 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 435 (645)
++.+...|.+.|++++|+..|++..+. .| +...+..+..++...|++++|.+.|++..+ +.|+ ...|..+...
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHH
Confidence 445888999999999999999999985 34 578889999999999999999999999985 4664 7788888888
Q ss_pred HHHcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 436 LGRAGH--LEESANFITSMPIPPDV--SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 436 ~~~~g~--~~~A~~~~~~m~~~pd~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
|...|. .+.+...++... .|+. ..|..+..++...|++++|+..|++++++.|++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 876654 445666666653 3443 344455666777899999999999999999964
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.8e-07 Score=77.18 Aligned_cols=99 Identities=10% Similarity=-0.005 Sum_probs=64.0
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 422 IKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 422 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+.|+ ...+......|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4443 345555666666666666666666654 2223 456666666667777777777777777777777776777777
Q ss_pred HHHHHHcCCchHHHHHHHHHHh
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777766654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=80.73 Aligned_cols=102 Identities=9% Similarity=-0.032 Sum_probs=88.2
Q ss_pred CCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 421 NIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 421 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35564 567777888888999999999988887 3344 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987644
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-05 Score=78.71 Aligned_cols=225 Identities=9% Similarity=0.089 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC--CHHHHHHHHcccCCCCC-ChhhHHHHHHHH----Hhc---CCHHH
Q 048812 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG--KIGEAQKLLGRYEIDEV-DVVLWTTLVSGY----VKS---NERDE 279 (645)
Q Consensus 210 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~~~~~-~~~~~~~li~~~----~~~---g~~~~ 279 (645)
++|.++.+.++..+ +.+..+|+.--..+...| +++++.+.++.+....| +..+|+.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 35555555555554 334445555555555555 66666666665433333 455566544444 333 56777
Q ss_pred HHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHH
Q 048812 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359 (645)
Q Consensus 280 A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 359 (645)
++++++++.+.+ .+|-.+|+
T Consensus 129 EL~~~~~~l~~~------------------------------------------------------------pkny~aW~ 148 (306)
T 3dra_A 129 EFDILEAMLSSD------------------------------------------------------------PKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHHHC------------------------------------------------------------TTCHHHHH
T ss_pred HHHHHHHHHHhC------------------------------------------------------------CCCHHHHH
Confidence 777777766443 35777888
Q ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------HHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 360 SVIAAYAMAGHAQ--KAIDLFLEMEETGTKPDQVTFIALLSACSHGGL------VDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 360 ~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~------~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
.-.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+. ++++.++++.+.. ..| |...|+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~---~~p~n~SaW~ 224 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV---KCPQNPSTWN 224 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH---HCSSCHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH---hCCCCccHHH
Confidence 8877888888888 999999999987543 66777766666666665 8889998888885 355 577888
Q ss_pred HHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCchhHHHHH
Q 048812 431 CMVDLLGRAGHLEE-SANFITSM-PI----PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TDPLNDGAHVLLA 499 (645)
Q Consensus 431 ~li~~~~~~g~~~~-A~~~~~~m-~~----~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~~~~y~~l~ 499 (645)
-+-.++.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|.++++.+.+ .+|.....|...+
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 88888888887444 55566655 11 34678888888888888999999999999886 7887766655443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.9e-07 Score=98.66 Aligned_cols=191 Identities=15% Similarity=0.083 Sum_probs=147.1
Q ss_pred HHcCCHHHHHHHHcccC--------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCch
Q 048812 239 FKCGKIGEAQKLLGRYE--------IDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309 (645)
Q Consensus 239 ~~~g~~~~A~~~~~~m~--------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~ 309 (645)
...|++++|.+.|++.. ...| +...|..+...|.+.|++++|++.|++..+.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------ 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV------------------ 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC------------------
Confidence 67899999999998753 2233 66788999999999999999999998765322
Q ss_pred hhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 048812 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP- 388 (645)
Q Consensus 310 ~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 388 (645)
..+...|..+..+|...|++++|++.|++..+. .|
T Consensus 464 ------------------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~ 499 (681)
T 2pzi_A 464 ------------------------------------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPG 499 (681)
T ss_dssp ------------------------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STT
T ss_pred ------------------------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 235678888999999999999999999999885 44
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLL 465 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll 465 (645)
+...+..+..++...|++++ .+.|++..+ +.| +...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 500 ELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSA 575 (681)
T ss_dssp CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHH
Confidence 46788888999999999999 999999885 456 4788999999999999999999999997 56776 45777777
Q ss_pred HHHHhcCC-----hHHHHHHHHHHHhcCCCCchhH
Q 048812 466 RACRCHQN-----VKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 466 ~a~~~~g~-----~~~a~~~~~~~~~~~p~~~~~y 495 (645)
.++...++ .+...++.+.+..+.+.++..+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 576 VTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 77766555 3444455555555555554433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-07 Score=80.61 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=85.9
Q ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 422 IKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 422 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 455 3566777888889999999999998876 3334 778899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+.+|...|++++|...+++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999888664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-06 Score=95.81 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=101.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHH
Q 048812 368 AGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 445 (645)
.|++++|++.|++..+. .| +...+..+...+...|++++|.+.+++..+ +.|+ ...+..+...|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 46778888888887764 34 366777777888888888888888888774 4553 67778888888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc---CCchHHHHHHHHHHh
Q 048812 446 ANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA---GRLDDMSRIRMKLRD 520 (645)
Q Consensus 446 ~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~---g~~~~a~~~~~~m~~ 520 (645)
.+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8888775 3333 5667888888888888888888888888888888888888888888888 888888887777655
Q ss_pred CC
Q 048812 521 MG 522 (645)
Q Consensus 521 ~~ 522 (645)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 43
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=80.98 Aligned_cols=122 Identities=11% Similarity=-0.074 Sum_probs=84.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQN 473 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~ 473 (645)
+...+...|++++|.+.|++. +.|+...|..+...|.+.|++++|.+.+++. .. +.+...|..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 334444555555555555433 2344555555555566666666666555554 11 2356677788888888888
Q ss_pred hHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 474 VKLAEHAFKHLTETDPLND----------------GAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~----------------~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+++|...++++++..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887766 788899999999999999999999887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=81.76 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.+...|.+.|++++|...|++.....| +...|..+...|...|++++|+..|++..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355556666666666666655322233 44555555555555555555555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-06 Score=82.91 Aligned_cols=205 Identities=7% Similarity=-0.042 Sum_probs=111.4
Q ss_pred cCChhHHHHHHHHHhhcC--chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC
Q 048812 117 NGYPQEVFAIYLYLVTRT--VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE----GVS 190 (645)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~--~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~ 190 (645)
.|++++|.+++++..+.. .++...++++.|...|.+ ....|...|++++|++.|.+..+. |-.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 72 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSL 72 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 345566666666654421 222224566666665543 355677778888887777766542 100
Q ss_pred CC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 191 PD-EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 191 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
+. ..+|..+...+...|++++|...+...++. +.+.|+... -..+|+.+..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~-------------~a~~~~~lg~ 124 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVENGTPDT-------------AAMALDRAGK 124 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTTTCHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHcCCHHH-------------HHHHHHHHHH
Confidence 00 124455555555555555555555544432 111111111 1234555666
Q ss_pred HHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhh
Q 048812 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349 (645)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~ 349 (645)
.|.. |++++|+..|++... ++..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~--------------------------------------------------------~~~~ 147 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAA--------------------------------------------------------VFEN 147 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHH--------------------------------------------------------HHHH
T ss_pred HHHc-CCHHHHHHHHHHHHH--------------------------------------------------------HHHh
Confidence 6666 777777777665431 1111
Q ss_pred cCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 350 ISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 350 ~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
... ....+|+.+...|...|++++|+..|++.... +..++ ..++..+..++...|++++|...|++..
T Consensus 148 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 000 01345777888888888999988888887652 11111 1245555556666677777777777655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-06 Score=79.06 Aligned_cols=63 Identities=17% Similarity=0.087 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
.+...|.+.|++++|...++++ ...|+ ...+..+..++.+.|+.++|...++.+....|++..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 4567789999999999999886 33343 256888999999999999999999999998887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.3e-07 Score=74.76 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRAC 468 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 468 (645)
.+......+.+.|++++|.+.|++..+ +.| +...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 444455555556666666666655553 233 3555566666666666666666666554 2233 567888899999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
...|++++|...|+++++++|+++.++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998887776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-06 Score=83.76 Aligned_cols=64 Identities=11% Similarity=0.008 Sum_probs=34.1
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 225 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+.+...+..+...+.+.|++++|...|++.....| +...+..+...+.+.|++++|...|++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 33444444555555556666666666555322233 44455555555666666666666555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.3e-06 Score=76.97 Aligned_cols=129 Identities=9% Similarity=-0.066 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVD 434 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 434 (645)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|.+.|++..+. .| +...|..+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 44566777888999999999999876 4678889999999999999999999999998853 34 5778889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-----------------DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-----------------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
+|...|++++|.+.+++. ...| +...|..+..++...|++++|...+++++++.|.+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999998876 2222 23688889999999999999999999999999976
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=7.1e-06 Score=80.66 Aligned_cols=162 Identities=6% Similarity=-0.089 Sum_probs=124.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHH
Q 048812 359 TSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQV----TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHY 429 (645)
Q Consensus 359 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~ 429 (645)
...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|.+.|+++.+...-.++ ...|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334678889999999999999988742 223322 3335666777888999999999999852222233 3478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chh
Q 048812 430 GCMVDLLGRAGHLEESANFITSMP-----I---PPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN------DGA 494 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~-----~---~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 494 (645)
+.+...|...|++++|...+++.- . .+. ..+|..+...|...|++++|...+++++++.+.. +.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999888751 1 122 3378889999999999999999999999855322 568
Q ss_pred HHHHHHHHHHcCC-chHHHHHHHHHHh
Q 048812 495 HVLLANIYAKAGR-LDDMSRIRMKLRD 520 (645)
Q Consensus 495 y~~l~~~~~~~g~-~~~a~~~~~~m~~ 520 (645)
|..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999996 5999998887643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.2e-06 Score=81.13 Aligned_cols=165 Identities=6% Similarity=-0.107 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-Q----VTFIALLSACSHGGLVDEGYDFLSKKSRVYNI--KPK-- 425 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-- 425 (645)
...+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|.+.+++..+...- .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34566678888999999999999998887532211 1 22344556678889999999999988742211 111
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM----PIPPD-----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL------ 490 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------ 490 (645)
...|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...+++++++.+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 458899999999999999999998775 11222 258889999999999999999999999885432
Q ss_pred CchhHHHHHHHHHHcCCchHH-HHHHHHHH
Q 048812 491 NDGAHVLLANIYAKAGRLDDM-SRIRMKLR 519 (645)
Q Consensus 491 ~~~~y~~l~~~~~~~g~~~~a-~~~~~~m~ 519 (645)
-..+|..++.+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 146788999999999999999 77677654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=74.35 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=84.5
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 422 IKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 422 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4453 455666777888889999999888876 3334 677888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+.+|...|++++|.+.+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988663
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.6e-06 Score=70.06 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
..+..+...+.+.|++++|..+++++ . .+.+..+|..+...+...|++++|...++++++..|.++..+..+..++..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 34444444455555555555554443 1 123566777888888888999999999999999999888888888777765
Q ss_pred cC
Q 048812 505 AG 506 (645)
Q Consensus 505 ~g 506 (645)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 43
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=78.63 Aligned_cols=146 Identities=11% Similarity=-0.010 Sum_probs=109.5
Q ss_pred ccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHH-HhcCCChHHHHH
Q 048812 139 KCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA-RTKLRDLEMGKN 214 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~ 214 (645)
+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+...+...... +...+....+.+
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccchHHH
Confidence 45666777777776653 46778999999999999999999999998765 3444333222111 122223345678
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD---VVLWTTLVSGYVKSNERDEARRLFDEM 287 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (645)
.+..+++.. +.+...+..+...|...|++++|...|++.....|+ ...|..+...+...|+.++|...|++.
T Consensus 96 ~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 96 RLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 888888775 556888999999999999999999999986555553 558999999999999999999999864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-06 Score=73.70 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH--HHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL--LANI 501 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~--l~~~ 501 (645)
...+..+...+...|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|.++..+.. ++..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444444444555555555544443 11 2356677888888888999999999999999999988877744 4444
Q ss_pred HHHcCCchHHHHHHHHHHh
Q 048812 502 YAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 502 ~~~~g~~~~a~~~~~~m~~ 520 (645)
+...|++++|.+.++....
T Consensus 127 ~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchHH
Confidence 7888999999998877643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-06 Score=69.61 Aligned_cols=84 Identities=14% Similarity=0.029 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
...+..+...+...|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|.++..+..+..++.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 334444444444555555555544443 11 2346677788888888999999999999999999988888888988888
Q ss_pred HcCCch
Q 048812 504 KAGRLD 509 (645)
Q Consensus 504 ~~g~~~ 509 (645)
..|+++
T Consensus 126 ~~~~~~ 131 (131)
T 2vyi_A 126 KLREAP 131 (131)
T ss_dssp HHTTCC
T ss_pred HHhcCC
Confidence 888753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-05 Score=77.64 Aligned_cols=214 Identities=13% Similarity=0.106 Sum_probs=160.8
Q ss_pred CHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcC--CHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccc
Q 048812 243 KIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSN--ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 243 ~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
.-++|.++++.+....| +...|+.--..+...| +++++++.++.+...++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--------------------------- 100 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--------------------------- 100 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT---------------------------
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc---------------------------
Confidence 34577777777544455 5567888888888888 88888888887764332
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCCCHHH
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY----AMA---GHAQKAIDLFLEMEETGTKPDQVT 392 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~pd~~t 392 (645)
.+..+|+.--..+ ... +++++++++++++.+.. +-|..+
T Consensus 101 ---------------------------------k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~a 146 (306)
T 3dra_A 101 ---------------------------------KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHV 146 (306)
T ss_dssp ---------------------------------TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---------------------------------ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 3444555544444 444 78999999999999863 336788
Q ss_pred HHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCC------HHHHHHHHHhC-CCC-CCHHHH
Q 048812 393 FIALLSACSHGGLVD--EGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGH------LEESANFITSM-PIP-PDVSIW 461 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~-pd~~~~ 461 (645)
|..-...+.+.|..+ ++.++++++.+. .| +-..|+.-..++.+.|+ ++++++.++++ ... -|...|
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 877777777788887 999999999953 44 45666665566666666 89999988876 333 478899
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 462 SSLLRACRCHQNV-KLAEHAFKHLTETD---PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 462 ~~ll~a~~~~g~~-~~a~~~~~~~~~~~---p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+-+-..+.+.|+. +......+++.+++ |.++.+...++.+|.+.|+.++|.++++.+.+
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9998888888874 44667888887776 78888999999999999999999999999875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=70.92 Aligned_cols=96 Identities=14% Similarity=-0.050 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566677777888888888887765 3333 57788888888999999999999999999999999889999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 048812 504 KAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 504 ~~g~~~~a~~~~~~m~~~ 521 (645)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999998887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=85.64 Aligned_cols=143 Identities=11% Similarity=0.042 Sum_probs=102.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 432 (645)
+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+.+. .| ....|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~----------~~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA----------QALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH----------HHHHHHHHHHH
Confidence 44566677777777777777777777776642 221000 00111000 01 13567777
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..+..++...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888887776 3334 677899999999999999999999999999999999999999999999999998
Q ss_pred H-HHHHHHHH
Q 048812 511 M-SRIRMKLR 519 (645)
Q Consensus 511 a-~~~~~~m~ 519 (645)
| ..+++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8 44555553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=85.96 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=98.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-QHYGC 431 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 431 (645)
+...|..+...|...|++++|+..+++..+. .| +...+..+..++...|++++|...|+...+. .|+. ..+..
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~ 111 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGD 111 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCS
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHH
Confidence 4556777777777778888888877777664 33 3566677777777788888888777776642 2321 01111
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc-CCchH
Q 048812 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA-GRLDD 510 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~-g~~~~ 510 (645)
.+....+..+...... .......++......+ ..+ ..|+.++|.+.++++++++|.+......+...+.+. +++++
T Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 188 (281)
T 2c2l_A 112 DIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188 (281)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHH
Confidence 1111111111111111 2222333444444333 333 268899999999999999998877777777777776 77889
Q ss_pred HHHHHHHHHhC
Q 048812 511 MSRIRMKLRDM 521 (645)
Q Consensus 511 a~~~~~~m~~~ 521 (645)
|.+++.+..+.
T Consensus 189 a~~~f~~a~~~ 199 (281)
T 2c2l_A 189 MDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHSSCT
T ss_pred HHHHHHhhhcc
Confidence 99999887653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-06 Score=71.35 Aligned_cols=119 Identities=8% Similarity=-0.028 Sum_probs=80.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+++++..+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~---------- 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---E---------- 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---C----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---C----------
Confidence 34556666666667777777777776666531 224555555556666666666666666555531 1
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
+.+...|..+...+...|++++|...++++++.+|.+...+..+..++...|+
T Consensus 81 ---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 ---------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ---------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 12456677777788888888888889988888888888888888888876653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-05 Score=83.18 Aligned_cols=168 Identities=8% Similarity=-0.072 Sum_probs=111.1
Q ss_pred HHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 342 LAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 342 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
.+..+|++... .+...|-..+.-+.+.|+.++|..+|++.... |+...+......+...+. +++.+.+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~~ 267 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHHH
Confidence 34455554443 45678888888889999999999999999987 543322221111112121 1233322
Q ss_pred hcC--------CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HhcCChHHHHHHHHHHH
Q 048812 419 VYN--------IKP---KMQHYGCMVDLLGRAGHLEESANFITSMPIP-PDVSIWSSLLRAC-RCHQNVKLAEHAFKHLT 485 (645)
Q Consensus 419 ~~~--------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-pd~~~~~~ll~a~-~~~g~~~~a~~~~~~~~ 485 (645)
.+- ..+ ....|-..++.+.+.|.++.|.++|++...+ ++..+|......- ...++.+.|..+|+.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 210 011 1356777788888889999999999988322 2334454322222 22347999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 486 ~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+..|+++..+...++...+.|+.+.|..+++..
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 988988777777888888999999999999886
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00015 Score=76.59 Aligned_cols=124 Identities=13% Similarity=0.110 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA--LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
..|-..+..+.+.|..+.|..+|++. .. ..++...|.. .+... ..++.+.|..+|+...+.++- +...+...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~~~--~~~~~~~yi 361 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKHPD--STLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCCC--CHHHHHHHH
Confidence 56777777777788899999999988 32 1234444432 22221 234689999999998875432 244566778
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
+...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..+
T Consensus 362 d~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999984 3577888888887888999988888888875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=6.6e-07 Score=82.38 Aligned_cols=95 Identities=9% Similarity=-0.042 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
..|..+..+|.+.|++++|...+++. ... .+...|..+..++...|++++|...|+++++++|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777788888888888888888776 223 3677888999999999999999999999999999999999999999988
Q ss_pred cCCchHHH-HHHHHHHhC
Q 048812 505 AGRLDDMS-RIRMKLRDM 521 (645)
Q Consensus 505 ~g~~~~a~-~~~~~m~~~ 521 (645)
.++.+++. ..++.|..+
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88877776 455555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-06 Score=76.04 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=70.6
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCh--HH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRA-CRCHQNV--KL 476 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a-~~~~g~~--~~ 476 (645)
.|++++|...++...+. .| +...|..+...|...|++++|.+.+++. ... .+...|..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34444555555444432 22 3445555555555555555555555544 111 245566666666 6667776 77
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 477 a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|...++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7788888777777777777777777888888888888777776543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8e-05 Score=73.01 Aligned_cols=130 Identities=12% Similarity=-0.025 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----CCCCC-hH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVY----NIKPK-MQ 427 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~ 427 (645)
+..+...+...|++++|+..|++....... +| ..+++.+..+|...|++++|..+|+++.+.. +..|. ..
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 344666677778999999999998874322 23 2368888889999999999999999887422 11222 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHhc
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-------PIPPD-VSIWSSLLRACRCHQN-VKLAEHAFKHLTET 487 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd-~~~~~~ll~a~~~~g~-~~~a~~~~~~~~~~ 487 (645)
+|..+...|.+.|++++|.+.+++. +..+. ..+|..+..++...|+ .++|...+++++++
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7888999999999999999988765 22222 5688889999999995 59999999998873
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.26 E-value=6e-05 Score=72.32 Aligned_cols=139 Identities=9% Similarity=-0.087 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCch
Q 048812 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~ 309 (645)
+.-.+..++...|++++|.++|+.+....|+......+...+.+.+++++|+..|+.........
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~--------------- 168 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF--------------- 168 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH---------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc---------------
Confidence 44556778888999999999999966566744466677778889999999999997543221000
Q ss_pred hhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048812 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389 (645)
Q Consensus 310 ~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 389 (645)
.....+..+..++...|++++|+..|++.......|.
T Consensus 169 -------------------------------------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 169 -------------------------------------------LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred -------------------------------------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc
Confidence 0122456678889999999999999999875433264
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 390 --QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 390 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
.........++.+.|+.++|...|+++.. ..|+...+
T Consensus 206 ~~~da~~~~glaL~~lGr~deA~~~l~~a~a---~~P~~~~~ 244 (282)
T 4f3v_A 206 CARAIAWYLAMARRSQGNESAAVALLEWLQT---THPEPKVA 244 (282)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSCCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHH
Confidence 33556667788899999999999999885 35553333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00047 Score=68.38 Aligned_cols=220 Identities=12% Similarity=0.139 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC-CHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhc-C-CHHHHHHHHHh
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCG-KIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKS-N-ERDEARRLFDE 286 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 286 (645)
+|.++.+.++..+ +-+..+|+.--..+...| .++++.+.++.+....| +..+|+.-...+.+. + +++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4445555555443 333444444444444455 36666666665433333 556676666555554 5 66777777777
Q ss_pred cccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHH
Q 048812 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366 (645)
Q Consensus 287 m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~ 366 (645)
+.+.+. +|-.+|+--.-.+.
T Consensus 151 ~L~~dp------------------------------------------------------------kNy~AW~~R~wvl~ 170 (349)
T 3q7a_A 151 SLLPDP------------------------------------------------------------KNYHTWAYLHWLYS 170 (349)
T ss_dssp HTSSCT------------------------------------------------------------TCHHHHHHHHHHHH
T ss_pred HHHhCC------------------------------------------------------------CCHHHHHHHHHHHH
Confidence 765543 34444444333333
Q ss_pred HcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-------HHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 367 MAGHAQ--------KAIDLFLEMEETGTKPDQVTFIALLSACSHGGL-------VDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 367 ~~g~~~--------~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
+.|.++ ++++.++++.+.... |...|+.....+.+.+. +++++++++++.. +.| |...|+
T Consensus 171 ~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~ 246 (349)
T 3q7a_A 171 HFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWN 246 (349)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 333333 777777777775332 56666666666666654 6777777777664 345 456666
Q ss_pred HHHHHHHHcCCH--------------------HHHHHHHHhCC-C-------CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048812 431 CMVDLLGRAGHL--------------------EESANFITSMP-I-------PPDVSIWSSLLRACRCHQNVKLAEHAFK 482 (645)
Q Consensus 431 ~li~~~~~~g~~--------------------~~A~~~~~~m~-~-------~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 482 (645)
-+-.++.+.|+- .+..++..++. . .+....+..|...|...|+.++|.++++
T Consensus 247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666666543 33333433331 1 2456667777777777777777777777
Q ss_pred HHH-hcCCCCchhH
Q 048812 483 HLT-ETDPLNDGAH 495 (645)
Q Consensus 483 ~~~-~~~p~~~~~y 495 (645)
.+. +.+|-....+
T Consensus 327 ~l~~~~dpir~~yw 340 (349)
T 3q7a_A 327 KLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHTTCGGGHHHH
T ss_pred HHHhhhChHHHHHH
Confidence 775 4566544433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-05 Score=76.31 Aligned_cols=127 Identities=12% Similarity=-0.012 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGT---KPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-----MQHY 429 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~ 429 (645)
.+...+...|++++|+..|++..+... .+. ..+++.+...|...|++++|..+|++..+.....|+ ..+|
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 355556667788888888777764321 112 346777777777888888888888777632112222 2567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 048812 430 GCMVDLLGRAGHLEESANFITSM-------PIPP-DVSIWSSLLRACRCHQNVKLA-EHAFKHLTE 486 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m-------~~~p-d~~~~~~ll~a~~~~g~~~~a-~~~~~~~~~ 486 (645)
..+...|.+.|++++|.+.+++. +... -..+|..+...+...|+.++| ...+++++.
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 77778888888888888877764 1111 156778888888889999988 777888776
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=72.70 Aligned_cols=153 Identities=10% Similarity=-0.028 Sum_probs=83.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHHcCCH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY---NIKP-KMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~ 442 (645)
..|++++|.++++..... ......++..+...+...|++++|...+++..+.. +..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566665533333221 11224455555555556666666666665554311 1111 134555666666666666
Q ss_pred HHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCc----hhHHHHHHHHHHcCC
Q 048812 443 EESANFITSM-P---IPP-D----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDP--LND----GAHVLLANIYAKAGR 507 (645)
Q Consensus 443 ~~A~~~~~~m-~---~~p-d----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p--~~~----~~y~~l~~~~~~~g~ 507 (645)
++|.+.+++. . ..+ + ..++..+...+...|++++|...+++.+++.+ .++ .++..++.+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666665543 1 011 2 23466666777777888888888777776321 121 234677778888888
Q ss_pred chHHHHHHHHHHh
Q 048812 508 LDDMSRIRMKLRD 520 (645)
Q Consensus 508 ~~~a~~~~~~m~~ 520 (645)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=66.90 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
...+..+...+.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 466777888888888888888888876 2 23467889999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 048812 504 KAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 504 ~~g~~~~a~~~~~~m~~~ 521 (645)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=68.47 Aligned_cols=97 Identities=13% Similarity=0.007 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++++|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777777788888887777765 2223 5678888888888899999999999999999999888899999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 048812 503 AKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~~ 521 (645)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0001 Score=67.39 Aligned_cols=154 Identities=18% Similarity=0.087 Sum_probs=88.0
Q ss_pred HHcCCHHHHHH---HHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 239 FKCGKIGEAQK---LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 239 ~~~g~~~~A~~---~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
...|++++|.+ .+.. .+.....++..+...+...|++++|...|++...
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------------------------- 54 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQ-------------------------- 54 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------------------------
Confidence 34577777777 5543 2223456677777778888888888877765431
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKP- 388 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 388 (645)
++..... ....+++.+...|...|++++|+..|++.... +-.|
T Consensus 55 ------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 55 ------------------------------QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp ------------------------------HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred ------------------------------HHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 1111111 13456777888888899999999888886643 2122
Q ss_pred -CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 048812 389 -DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFIT 450 (645)
Q Consensus 389 -d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 450 (645)
....+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1344666667777788888888877766532111111 1223444444555555555544444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=5e-06 Score=69.58 Aligned_cols=95 Identities=17% Similarity=0.022 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 505 (645)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999998887 3344 6788999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048812 506 GRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 506 g~~~~a~~~~~~m~~~~ 522 (645)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999886543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.4e-06 Score=67.07 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANI 501 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~ 501 (645)
...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445556666677777777777777665 22 235667788888888888888888888888888888 88888888888
Q ss_pred HHHc-CCchHHHHHHHHHHhCC
Q 048812 502 YAKA-GRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 502 ~~~~-g~~~~a~~~~~~m~~~~ 522 (645)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888886644
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00011 Score=68.08 Aligned_cols=126 Identities=19% Similarity=0.134 Sum_probs=92.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCchhHH
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR----DLEMGKNLHLFLEESTMKISGSLL 231 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~ 231 (645)
-+..++..|...|...+++++|++.|++..+.| +...+..+-..+.. + ++++|.+.+....+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 466778888888888888888888888888765 55666666666766 6 7888888888887765 45667
Q ss_pred HHHHHHHHH----cCCHHHHHHHHcccCCCCCC---hhhHHHHHHHHHh----cCCHHHHHHHHHhcc
Q 048812 232 NYLVDMYFK----CGKIGEAQKLLGRYEIDEVD---VVLWTTLVSGYVK----SNERDEARRLFDEMV 288 (645)
Q Consensus 232 ~~li~~y~~----~g~~~~A~~~~~~m~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 288 (645)
..|..+|.. .+++++|.+.|++.....++ ..++..|...|.. .+++++|+..|++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 777777776 77888888888874333332 5677777777777 667777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=66.07 Aligned_cols=91 Identities=9% Similarity=-0.021 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|...++++++..|.++..+..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444444444444444443 111 234444444455555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHH
Q 048812 507 RLDDMSRIRMKLR 519 (645)
Q Consensus 507 ~~~~a~~~~~~m~ 519 (645)
++++|.+.+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=71.72 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLR 466 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~ 466 (645)
...+..+...+...|++++|.+.|++..+ +.| +...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455555566666666666666666553 233 3455555555555556666555555554 2222 3445555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
++...|++++|...|+++++++|+++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 55555555566655555555555555433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.4e-05 Score=74.01 Aligned_cols=182 Identities=12% Similarity=0.015 Sum_probs=139.0
Q ss_pred CCCcHHHHHHHHhhcCc---CChhHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------
Q 048812 336 SIDNIELAYDLFSEISE---KNVYLWTSV-------IAAYAMAGHAQKAIDLFLEMEETGTKPD---------------- 389 (645)
Q Consensus 336 ~~~~~~~A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~pd---------------- 389 (645)
...+...|.+.|.+... .....|+.+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45689999999998765 346789888 5666666667777666655443 3332
Q ss_pred ------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----H
Q 048812 390 ------QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV----S 459 (645)
Q Consensus 390 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~----~ 459 (645)
......+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234456678889999999999988773 3565436666777899999999999999977544433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETD--PL-NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~-~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.+..|..++...|++++|+..|++..... |. .+.....+..++.+.|+.++|..+++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888899999999999999999998633 54 44577889999999999999999999997743
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=71.27 Aligned_cols=126 Identities=6% Similarity=0.063 Sum_probs=98.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH-HHHcCCH-
Q 048812 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDL-LGRAGHL- 442 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~- 442 (645)
...|++++|+..|++..... +.+...+..+...+...|++++|...|++..+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45688889999998887752 335778888888999999999999999988853 34 46777788888 7788998
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 443 -EESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 443 -~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
++|...+++. ...| +...|..+...+...|++++|...++++++..|.++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998876 3334 577888899999999999999999999999999876543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-05 Score=63.03 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=66.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRAC 468 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 468 (645)
.+..+...+...|++++|.+.|+...+. .| +...+..+...+.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3344444444555555555555554431 22 3444555555555566666666555554 2223 566777888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
...|++++|...++++++.+|.++..+..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888899999999999888888877766665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00012 Score=72.28 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=80.0
Q ss_pred CChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhH
Q 048812 353 KNVYLWTSVIAAYAMAGH-AQKAIDLFLEMEETGTKPDQVTFIALLSACSHG--------------GLVDEGYDFLSKKS 417 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~ 417 (645)
+|-.+|+--.-.+...|. ++++++.+.++++..+. |...|+.....+.+. +.++++.+++....
T Consensus 142 rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai 220 (331)
T 3dss_A 142 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 220 (331)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHH
Confidence 455556655555556666 46777777777665322 444554443333332 44666777776666
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHH
Q 048812 418 RVYNIKP-KMQHYGCMVDLLGRA-----------GHLEESANFITSM-PIPPDVSIWSSLLRA-----CRCHQNVKLAEH 479 (645)
Q Consensus 418 ~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~pd~~~~~~ll~a-----~~~~g~~~~a~~ 479 (645)
. +.| |...|+-+-..+.+. +.++++++.++++ ...||. .|..+-.+ ....+..++...
T Consensus 221 ~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~ 296 (331)
T 3dss_A 221 F---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQ 296 (331)
T ss_dssp H---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred H---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHH
Confidence 4 344 345554444444433 3466666666665 444553 34322221 123466677778
Q ss_pred HHHHHHhcCCCCchhHHHHHHHH
Q 048812 480 AFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 480 ~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
.+.++.+++|...+-|.-|..-+
T Consensus 297 ~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 297 YFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhCcchhhHHHHHHHHH
Confidence 88888888887766666554433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-05 Score=66.57 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=66.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+...|..+...+...|++++|+..|++..+. .|+... ....+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchH--------------------------------HHHHHHHHH
Confidence 4455555556666666666666666665542 343100 023334444
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
..|...|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|.++..+..+..+.
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4444444454444444433 1122 4566777777788888888888888888888888776666555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=69.52 Aligned_cols=104 Identities=8% Similarity=0.000 Sum_probs=85.5
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 048812 386 TKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIW 461 (645)
Q Consensus 386 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 461 (645)
+.|+ ...+..+...+...|++++|...|+.+.+ +.| +...|..+..+|.+.|++++|.+.|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3454 45677777888889999999999998885 456 4778888999999999999999998886 3444 56788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
..+..++...|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999998753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=67.15 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4677788888899999999999988886 4444 6788999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 048812 503 AKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~~ 521 (645)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988663
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-05 Score=64.88 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
+...+..+...+...|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3566777888888899999999888876 22 346788999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 048812 503 AKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~~ 521 (645)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-05 Score=67.08 Aligned_cols=127 Identities=9% Similarity=-0.006 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVD 434 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 434 (645)
..|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|.+.+++..+. .| +...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 456666777777777777777777776642 224666677777777777777777777777642 33 4566777777
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-DVSIWS--SLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~--~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
.+.+.|++++|.+.+++. ...| +...+. .+...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777778888877777765 2222 344443 333336667788888888777655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=85.40 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=84.4
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~ 475 (645)
.+...|++++|.+.+++..+ +.|+ ...|..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34455666666666666664 2343 566666777777777777777777665 3334 5678888999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HHHcCCchHHHHHHHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANI--YAKAGRLDDMSRIRMK 517 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~--~~~~g~~~~a~~~~~~ 517 (645)
+|++.++++++++|+++..+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999888888888 8889999999998874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.9e-06 Score=71.96 Aligned_cols=103 Identities=6% Similarity=-0.083 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLR 466 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~ 466 (645)
...+..+...+...|++++|...|+...+ +.| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34455555666677777777777776664 234 4566666777777777777777777665 2333 5567888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
++...|++++|+..|++++++.|+++...
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 89999999999999999999998876553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-05 Score=67.29 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=85.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
+...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4567777788888888888888888876 55676 678888999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 048812 500 NIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.5e-05 Score=81.35 Aligned_cols=116 Identities=10% Similarity=0.036 Sum_probs=73.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHc
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRA 439 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 439 (645)
...+.+.|++++|++.|++..+. .| +..++..+..++...|++++|.+.+++..+ +.| +...|..+..+|.+.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 34455677777777777777764 33 366777777777777777777777777774 345 356677777777777
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 048812 440 GHLEESANFITSM-PIPP-DVSIWSSLLRA--CRCHQNVKLAEHAFK 482 (645)
Q Consensus 440 g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a--~~~~g~~~~a~~~~~ 482 (645)
|++++|.+.+++. ...| +...+..+..+ +...|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888777777765 2222 22334444444 666777777777777
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.7e-05 Score=68.69 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 458 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457888888888999999999999999999999999999999999999999999999888765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.4e-05 Score=68.23 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 432 (645)
+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+ +.|+ ...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45667777778888888888888888877752 22566777777788888888888888887774 3453 6777778
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 048812 433 VDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m 452 (645)
..+|.+.|++++|.+.|++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 88888888888888877765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.4e-05 Score=67.44 Aligned_cols=101 Identities=10% Similarity=-0.028 Sum_probs=60.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCH 471 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~ 471 (645)
.+...+...|++++|...|+...+ ..| +...|..+..+|.+.|++++|...+++. ...| +...|..+..++...
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 333444455555555555555443 223 3444555555555555555555555554 1223 455677777888888
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
|++++|...+++++++.|.++......
T Consensus 100 g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 888889999998888888776654443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=66.29 Aligned_cols=94 Identities=7% Similarity=0.010 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-------hHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG-------AHVL 497 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-------~y~~ 497 (645)
..+..+...+.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|+..++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44566777888888888888888775 3344 5778888999999999999999999999998876543 6777
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88889999999999999988754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=6.7e-05 Score=62.82 Aligned_cols=106 Identities=9% Similarity=-0.047 Sum_probs=60.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRC 470 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~ 470 (645)
......+...|++++|...|++..+ +.| +...|..+...|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3333444444444444444444442 122 2444555555555555555555555543 2223 45677777778888
Q ss_pred cCChHHHHHHHHHHHhcC------CCCchhHHHHHHHH
Q 048812 471 HQNVKLAEHAFKHLTETD------PLNDGAHVLLANIY 502 (645)
Q Consensus 471 ~g~~~~a~~~~~~~~~~~------p~~~~~y~~l~~~~ 502 (645)
.|++++|...++++++++ |.++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888887 76665555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00069 Score=66.82 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=123.2
Q ss_pred cCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCC-ChH
Q 048812 352 EKNVYLWTSVIAAYAMAGH--AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL-VDEGYDFLSKKSRVYNIKP-KMQ 427 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~ 427 (645)
+++..+|+.-.-.+...|+ +++++++++++.+... -|...|+.-...+...|. .+++.++++.+.+. .| +..
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~S 180 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYS 180 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHH
Confidence 3577888888778888884 8999999999998743 367777777777777787 68999999999953 44 566
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHH
Q 048812 428 HYGCMVDLLGRA--------------GHLEESANFITSM-PIPP-DVSIWSSLLRACRCH-----------QNVKLAEHA 480 (645)
Q Consensus 428 ~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~-----------g~~~~a~~~ 480 (645)
.|+....++.+. +.++++++.+++. ...| |...|+-+-..+... +.++++++.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 676666666655 5688899888876 3334 778887666665554 457899999
Q ss_pred HHHHHhcCCCCchhHHHHHHHH---HHcCCchHHHHHHHHHHhCC
Q 048812 481 FKHLTETDPLNDGAHVLLANIY---AKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~---~~~g~~~~a~~~~~~m~~~~ 522 (645)
++++++++|++...+..++... ...|..+++...+.++++.+
T Consensus 261 ~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 261 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 9999999999866655444332 24567778888888887643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.3e-05 Score=66.91 Aligned_cols=62 Identities=13% Similarity=-0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTET-------DPLNDGAH----VLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~~~~y----~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888888899999999999999888 99988888 8999999999999999999988865
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.4e-05 Score=64.77 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=50.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPPD-V---SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN---DGAHVLLANIYAK 504 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~pd-~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~y~~l~~~~~~ 504 (645)
...+.+.|++++|.+.+++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34445555555555555543 11122 1 245555556666666666666666666666665 4556666666666
Q ss_pred cCCchHHHHHHHHHHh
Q 048812 505 AGRLDDMSRIRMKLRD 520 (645)
Q Consensus 505 ~g~~~~a~~~~~~m~~ 520 (645)
.|++++|...++++.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.5e-05 Score=64.53 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------chhHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN-------DGAHV 496 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~y~ 496 (645)
...+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777777888888888877765 2 23467788888888999999999999999999987765 67888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988663
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.94 E-value=7.8e-05 Score=78.29 Aligned_cols=144 Identities=10% Similarity=0.041 Sum_probs=99.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ .. .-....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~----~~-----~~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA----SE-----SFLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH----HH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH----HH-----HHHHHHHHHHH
Confidence 3456777777888888888888888877753 1221000 0 000000 00 00145677778
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a 511 (645)
.+|.+.|++++|...+++. ...| +...|..+..+|...|++++|+..|+++++++|++..++..+..++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776 3333 6778999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHHHH
Q 048812 512 SR-IRMKLR 519 (645)
Q Consensus 512 ~~-~~~~m~ 519 (645)
.+ .++.|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 64 455553
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.6e-06 Score=67.56 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666666666666666666666666555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00015 Score=66.20 Aligned_cols=93 Identities=12% Similarity=-0.033 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCC--------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM----PIPP--------------DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--------------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
.+..+...+.+.|++++|.+.+++. +..| ...+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444455555555555555555543 1111 136788889999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 490 ~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
.++.++..++.+|...|++++|...+++..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.93 E-value=4.2e-05 Score=76.75 Aligned_cols=147 Identities=10% Similarity=-0.008 Sum_probs=117.6
Q ss_pred CChHHHHHHHccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHH
Q 048812 141 GKLKEVCQLFDKLPN--R-DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD--------------EVTMVSLISAR 203 (645)
Q Consensus 141 g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~ 203 (645)
+++++|...|+...+ | +...|+.+...|.+.|++++|+..|++..+...... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544432 2 456788999999999999999999999987632211 37888899999
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHH-H
Q 048812 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEA-R 281 (645)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A-~ 281 (645)
.+.|++++|...+..+++.. +.+...+..+..+|...|++++|...|++.....| +...|..+...+.+.|+.++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 56788899999999999999999999998544445 677899999999999999988 4
Q ss_pred HHHHhcc
Q 048812 282 RLFDEMV 288 (645)
Q Consensus 282 ~~~~~m~ 288 (645)
.+|..|.
T Consensus 286 ~~~~~~~ 292 (336)
T 1p5q_A 286 KLYANMF 292 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=9.1e-05 Score=62.87 Aligned_cols=98 Identities=8% Similarity=-0.117 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLR 466 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~ 466 (645)
...+..+...+...|++++|...|+...+. .| +...|..+...|...|++++|...+++. ...| +...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 334444444444444444444444444421 22 2344445555555555555555555443 1222 4567777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 788888888888888888887766
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=7.7e-05 Score=64.98 Aligned_cols=137 Identities=13% Similarity=0.044 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
..++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+++++..+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-------- 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR-------- 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------
Confidence 345667777777778888888777776643110 11 12444555555556666666665555442110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCchhHHHHHHHH
Q 048812 430 GCMVDLLGRAGHLEESANFITSMPIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP------LNDGAHVLLANIY 502 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p------~~~~~y~~l~~~~ 502 (645)
..+..+ ...++..+...+...|++++|...+++.++..+ .....+..++.+|
T Consensus 81 ---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 81 ---------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 001001 133455566666777777777777777766321 1134566788888
Q ss_pred HHcCCchHHHHHHHHHHh
Q 048812 503 AKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~ 520 (645)
...|++++|.+.+++..+
T Consensus 140 ~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888877644
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00033 Score=72.71 Aligned_cols=163 Identities=8% Similarity=-0.060 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCC-ChH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQV----TFIALLSACSHGGLVDEGYDFLSKKSRV---YNIKP-KMQ 427 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 427 (645)
++..+...|...|++++|.+++.+.... +..++.. +.+.+-..+...|..+++.+++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4677899999999999999999987642 1122222 2233334455678999999988876632 12222 256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC----c
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-------PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETD---PLN----D 492 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---p~~----~ 492 (645)
++..|...|...|++++|..++++. ..+| ...++..++..|...|++++|..++++++... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7889999999999999999998875 1122 24578888999999999999999999998743 322 2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 493 GAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 493 ~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
..+..++..+...|++++|...+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 356677888889999999988776664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00089 Score=66.39 Aligned_cols=217 Identities=11% Similarity=0.042 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcC-ChHHHHHHHhhCC---CCCcccHHHHHHHHHHc-CChhHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG-DLGYAQQIIRQGD---EPEIKIWNSIIENQLIN-GYPQEVFAI 126 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~ 126 (645)
...+++.++.+.++... +-+..+|+.--..+...| +++++...++.+. +.+..+|+.--..+.+. +
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~-------- 138 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP-------- 138 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--------
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--------
Confidence 33455677777776665 334455666555555666 4777777776654 33445566555444333 3
Q ss_pred HHHHhhcCchhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChH--------HHHHHHHHHhhCCCCCChhh
Q 048812 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYR--------EGLGLLSKMGAEGVSPDEVT 195 (645)
Q Consensus 127 ~~~m~~~~~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t 195 (645)
.+.+++..+++++.+ +|..+|+.-.-.+.+.|.++ ++++.+.++.+..+. |...
T Consensus 139 --------------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SA 203 (349)
T 3q7a_A 139 --------------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSA 203 (349)
T ss_dssp --------------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred --------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 044555555555543 46667776555555555555 899999999887433 6667
Q ss_pred HHHHHHHHhcCCC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH--------------------HHHH
Q 048812 196 MVSLISARTKLRD-------LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI--------------------GEAQ 248 (645)
Q Consensus 196 ~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~--------------------~~A~ 248 (645)
|+.....+.+.+. ++++.+....++... +.|...|+-+-..+.+.|.. ....
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVE 282 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHH
Confidence 7777777777765 577888888888776 66888888877777777653 3444
Q ss_pred HHHcccCCCC-------CChhhHHHHHHHHHhcCCHHHHHHHHHhcc-cCCch
Q 048812 249 KLLGRYEIDE-------VDVVLWTTLVSGYVKSNERDEARRLFDEMV-ERNLI 293 (645)
Q Consensus 249 ~~~~~m~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~ 293 (645)
....++.... ++...+..|+..|...|+.++|.++++.+. +-|.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 4444433222 467788899999999999999999999986 44543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00018 Score=59.95 Aligned_cols=115 Identities=8% Similarity=-0.041 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|..++++..+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 345555666666666666666666665542 2234445555555555555555555555544211 10
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 436 LGRAGHLEESANFITSMPIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
..++ ..+|..+...+...|++++|...++++++..| ++.....+..++.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0122 45666777777888888888888888888777 4555555544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00015 Score=60.69 Aligned_cols=100 Identities=10% Similarity=0.021 Sum_probs=58.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcC
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQ 472 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g 472 (645)
.+...|++++|...|+.+.+...-.|. ...+..+...+.+.|++++|.+.+++. ...|+ ...+..+..++...|
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 344445555555555554432111110 134445555566666666666655554 12232 456677777888889
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 473 NVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
++++|...++++++..|+++......
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 91 KNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 99999999999998888876554433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00012 Score=59.14 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP---DVSIWSSLLRACR 469 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---d~~~~~~ll~a~~ 469 (645)
.+...+...|++++|...|++..+. .| +...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3334444444444444444444421 12 2344555555555666666666555554 2223 4677788888888
Q ss_pred hc-CChHHHHHHHHHHHhcCCCCc
Q 048812 470 CH-QNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 470 ~~-g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.. |++++|.+.++++++..|.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCCC
Confidence 88 888888888888888888653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0002 Score=60.20 Aligned_cols=62 Identities=13% Similarity=-0.026 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
..+|..+...+.+.|++++|++.|++.++. .| +...|..+..+|...|++++|++.+++..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345677788888888888888888888774 34 466777777788888888888888877764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00017 Score=75.74 Aligned_cols=123 Identities=8% Similarity=0.026 Sum_probs=93.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CC---CC-hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 048812 400 CSHGGLVDEGYDFLSKKSRVYN--IK---PK-MQHYGCMVDLLGRAGHLEESANFITSM---------PIPPDV-SIWSS 463 (645)
Q Consensus 400 ~~~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ 463 (645)
+...|++++|..++++..+... +. |+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567777777777766653221 12 22 567788888888888888888877764 344544 47889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----cCCCCchh---HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTE-----TDPLNDGA---HVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|...|...|++++|+.+++++++ ++|+.|.+ ...|..++...|++++|+.++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 57777654 4578888889999999999999998754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=8e-05 Score=64.86 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=63.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHhhcCc-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 048812 326 VHVYIKKNQISIDNIELAYDLFSEISE-----KN----VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPD----QV 391 (645)
Q Consensus 326 i~~~~~~~~~~~~~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~ 391 (645)
++..+.......+++++|...|.+... .+ ..++..+...|...|++++|+..+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444444455688888888876543 12 24788899999999999999999999775311 111 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
.+..+...+...|++++|.+++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55666667777888888887777665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00011 Score=71.59 Aligned_cols=105 Identities=8% Similarity=-0.134 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLL 465 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll 465 (645)
+...+..+...+...|++++|...|++..+ ..| +...|..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456777888888999999999999998885 355 5788888999999999999999998885 5555 567888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.++...|++++|+..++++++++|+++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 8899999999999999999998887654444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00015 Score=73.62 Aligned_cols=137 Identities=9% Similarity=0.036 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMV 433 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 433 (645)
...|..+...+.+.|++++|+..|++..+. .|+.. .... ..... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHH
Confidence 456778888888899999999998887752 11100 0000 11111 1223 357788888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a 511 (645)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998886 5555 5778999999999999999999999999999999999999999999888887776
Q ss_pred HH
Q 048812 512 SR 513 (645)
Q Consensus 512 ~~ 513 (645)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00013 Score=60.73 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 436 (645)
+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|+.++|...|++..+ +.|+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~----------- 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPK----------- 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC-----------
Confidence 445555566666666666666666653 23 344555555555556666666665555553 2332
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
+...|..+..++...|++++|+..++++++.+|.+
T Consensus 84 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 84 --------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 34455555556666666666666666666666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.7e-05 Score=75.81 Aligned_cols=148 Identities=7% Similarity=-0.079 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
....|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ . ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHH
Confidence 3556777888888899999999999988774 455432 23344444443322 1 23677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHcCCchH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY-AKAGRLDD 510 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~-~~~g~~~~ 510 (645)
.+|.+.|++++|...+++. ...| +...|..+..+|...|++++|+..|+++++++|+++.++..|..+. ...+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999998888876 3334 6778888889999999999999999999999998888888887774 34566677
Q ss_pred HHHHHHHHHhC
Q 048812 511 MSRIRMKLRDM 521 (645)
Q Consensus 511 a~~~~~~m~~~ 521 (645)
+..+++.|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77788777543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=8.3e-05 Score=64.43 Aligned_cols=111 Identities=19% Similarity=0.100 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--------Q-----VTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 421 (645)
...+......+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..++...+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--- 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--- 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 344566666777778888888888777764 333 1 1444444444444444444444443331
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 422 IKPKMQHYGCMVDLLGRAGHLEESANFITS-MPIPPDV-SIW----SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 422 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~pd~-~~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
+|++ ..+.||. ..| .....++...|++++|+..|+++++++|.+...+
T Consensus 86 --------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 86 --------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp --------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred --------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 1111 1346754 578 8999999999999999999999999999886654
Q ss_pred H
Q 048812 496 V 496 (645)
Q Consensus 496 ~ 496 (645)
.
T Consensus 140 ~ 140 (159)
T 2hr2_A 140 P 140 (159)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.71 E-value=5.2e-05 Score=62.71 Aligned_cols=92 Identities=7% Similarity=0.021 Sum_probs=59.1
Q ss_pred cCcHHHHHHHHHHhHHhcCC-CC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 048812 403 GGLVDEGYDFLSKKSRVYNI-KP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAE 478 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~ 478 (645)
.|++++|...|++..+ .+. .| +...+..+...|.+.|++++|.+.+++. ...| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555666666666553 110 13 2455666666777777777777777665 2223 4667777888888888888888
Q ss_pred HHHHHHHhcCCCCchhH
Q 048812 479 HAFKHLTETDPLNDGAH 495 (645)
Q Consensus 479 ~~~~~~~~~~p~~~~~y 495 (645)
..++++++..|.++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888876543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0001 Score=59.81 Aligned_cols=92 Identities=10% Similarity=-0.052 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN------DGAHV 496 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~y~ 496 (645)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456666777777788888888877765 2233 67788889999999999999999999999999988 67777
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 048812 497 LLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~ 516 (645)
.+..++...|+.++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0022 Score=68.95 Aligned_cols=153 Identities=10% Similarity=0.003 Sum_probs=120.8
Q ss_pred ChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHhHHhcC
Q 048812 354 NVYLWTSVIAAYAMAGH----------AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG--LVDEGYDFLSKKSRVYN 421 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~ 421 (645)
+...|+.--..+...|+ ++++++.++++.+... -+..+|..-..++.+.+ +++++.+.++++.+
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~--- 137 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLE--- 137 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh---
Confidence 44566666666666666 8899999999988632 35778887777788888 77999999999985
Q ss_pred CCC-ChHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------------CChHHHHHHHHH
Q 048812 422 IKP-KMQHYGCMVDLLGRAG-HLEESANFITSM-PIPP-DVSIWSSLLRACRCH--------------QNVKLAEHAFKH 483 (645)
Q Consensus 422 ~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~--------------g~~~~a~~~~~~ 483 (645)
+.| +...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+... +.++++.+.+++
T Consensus 138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 345 4666777777778888 899999998887 4445 678888887776663 557999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 484 LTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 484 ~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
++..+|++..+|..+..++.+.++.++
T Consensus 218 ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 218 AFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 999999999999999999999888655
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0002 Score=63.03 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETG------TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQ 427 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 427 (645)
...|......+.+.|++++|+..|.+....- -.|+...+ .. +.| +..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~------~~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE------LDRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH------HHHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH------HHHHHHH
Confidence 4567777778888888888888888776530 01110000 00 012 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-hhHHHHHHH
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANI 501 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-~~y~~l~~~ 501 (645)
.|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|..+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6777788888888888888887775 3334 577889999999999999999999999999999886 434444333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00046 Score=72.35 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 458 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999999999999999999999999999999998764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00046 Score=71.57 Aligned_cols=158 Identities=12% Similarity=0.056 Sum_probs=118.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPD----------------QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 426 (645)
..+.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456778999999999999987532211 1247788899999999999999999887644433332
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 048812 427 ----QHYGCMVDLLGRAGHLEESANFITSM-------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTET------D 488 (645)
Q Consensus 427 ----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~------~ 488 (645)
.+.+.+...+...|++++|.++++.. +..+. ..++..|...+...|++++|..+++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23334444455678899998887664 23333 457888999999999999999999998873 1
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 489 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|.....|..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999988754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00027 Score=71.76 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP-DVSIWSSLLRAC 468 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~ 468 (645)
...+..+...+...|++++|.+.|++..+. .|.. ......+++. ...| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777776631 1110 0001111111 1223 456888999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0001 Score=73.97 Aligned_cols=148 Identities=8% Similarity=-0.014 Sum_probs=74.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 048812 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406 (645)
Q Consensus 327 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 406 (645)
+.......+..+++++|...|......+.... .+...|+.+++...+. ...|..+..++.+.|++
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCCH
Confidence 34455566778899999999987654221111 1222334444433221 13677778888888999
Q ss_pred HHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChHHHHHHHH
Q 048812 407 DEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRA-CRCHQNVKLAEHAFK 482 (645)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a-~~~~g~~~~a~~~~~ 482 (645)
++|...++...+ +.| +...|..+..+|...|++++|.+.|++. .+.|+ ...+..|... ....+..+.+...|+
T Consensus 247 ~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 247 DEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888875 345 4778888888999999999999998887 55564 3445555444 334567788889999
Q ss_pred HHHhcCCCCc
Q 048812 483 HLTETDPLND 492 (645)
Q Consensus 483 ~~~~~~p~~~ 492 (645)
+++...|.++
T Consensus 324 ~~l~~~p~~~ 333 (338)
T 2if4_A 324 GIFKGKDEGG 333 (338)
T ss_dssp ----------
T ss_pred HhhCCCCCCC
Confidence 9999888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00029 Score=54.64 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777778888888888877765 2223 56788888888999999999999999999999999888888888877
Q ss_pred HcC
Q 048812 504 KAG 506 (645)
Q Consensus 504 ~~g 506 (645)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00022 Score=56.98 Aligned_cols=65 Identities=26% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
-+...|..+...+...|++++|+..|+++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778899999999999999999999999999999999999999999999999999999988765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00024 Score=58.26 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=61.0
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 445 SANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 445 A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444443 3334 5678888888888999999999999999999998888899999999999999999999888765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00091 Score=52.45 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 455 PPDVSIWSSLLRACRCHQN---VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 455 ~pd~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++|+..+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577888888888765555 7999999999999999999999999999999999999999999998765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=69.45 Aligned_cols=116 Identities=15% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCc---hhHH
Q 048812 435 LLGRAGHLEESANFITSM---------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTE-----TDPLND---GAHV 496 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m---------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~y~ 496 (645)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999888764 23344 35889999999999999999999999987 566665 4677
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHc
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~ 568 (645)
.|+.+|...|++++|..++++..+.-.. .=...||.+.++...+.+...++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987542110 01237999999998888877776653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0016 Score=67.18 Aligned_cols=115 Identities=11% Similarity=0.039 Sum_probs=84.9
Q ss_pred HHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCc---hhH
Q 048812 434 DLLGRAGHLEESANFITSM---------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTE-----TDPLND---GAH 495 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m---------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~y 495 (645)
.-+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455677777777777654 11222 34788888999999999999999999887 456555 467
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 566 (645)
..|+.+|...|++++|..++++..+.-. + .=...||.+.+++..|.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999988755210 0 112379999999988888877775
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00024 Score=61.40 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=60.9
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 048812 438 RAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQN----------VKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 505 (645)
|.+++++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|+++.+|..+.++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334445555444443 2222 44455555555544443 67999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhCC
Q 048812 506 G-----------RLDDMSRIRMKLRDMG 522 (645)
Q Consensus 506 g-----------~~~~a~~~~~~m~~~~ 522 (645)
| ++++|.+.+++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999997744
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00095 Score=53.85 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++...|..+...+...|++++|...+++++++.|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999999999999999999999999999999999999999987643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.003 Score=53.77 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR----AGHLEE 444 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 444 (645)
+++++|+++|++..+.| .|+.. +-..|...+.+++|.++|++..+ . -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677888888877776 33433 55556666777777777777763 2 345555555555555 555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 048812 445 SANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTET 487 (645)
Q Consensus 445 A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~ 487 (645)
|.++|++.-..-++..+..|...|.. .+|.++|...+++..+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555554222344444445555544 45555555555555554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0036 Score=48.14 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888889999999999999999999999999999999999999999999999999988663
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0055 Score=52.06 Aligned_cols=113 Identities=6% Similarity=-0.041 Sum_probs=94.5
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAE 478 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~ 478 (645)
.++.++|.++|++..+ .| .|+.. |..+|...+.+++|.++|++.-..-+...+..|...|.. .+|.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3578899999999884 44 33333 778888888999999999987434678888888888888 89999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 048812 479 HAFKHLTETDPLNDGAHVLLANIYAK----AGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 479 ~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 523 (645)
..|++..+. .++..+..|..+|.. .+++++|.+.+++..+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987 456889999999999 8999999999999988774
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00069 Score=58.50 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=71.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH----------HHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 048812 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV----------DEGYDFLSKKSRVYNIKPK-MQHYGCMVD 434 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 434 (645)
.+.+.+++|++.+++..+.. +-+...|..+..++...+++ ++|+..|++..+ +.|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHH
Confidence 45566777777777776642 22456666666666666554 355555555553 3443 344555555
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 048812 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 514 (645)
+|...|++ .|+.. ...|++++|+..|+++++++|++. .|..-+.+. ++|.++
T Consensus 89 ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~~------~ka~el 140 (158)
T 1zu2_A 89 AYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEMT------AKAPQL 140 (158)
T ss_dssp HHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHH------HTHHHH
T ss_pred HHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHH------HhCHhc
Confidence 55444433 23321 012689999999999999999874 443333332 335555
Q ss_pred HHHHHhCC
Q 048812 515 RMKLRDMG 522 (645)
Q Consensus 515 ~~~m~~~~ 522 (645)
.-.....+
T Consensus 141 ~~~~~~~~ 148 (158)
T 1zu2_A 141 HAEAYKQG 148 (158)
T ss_dssp HHHHHHSS
T ss_pred cCcccccc
Confidence 55554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.007 Score=68.32 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=103.9
Q ss_pred HhcCChHHHHH-HHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHH
Q 048812 84 VFTGDLGYAQQ-IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162 (645)
Q Consensus 84 ~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n 162 (645)
...+++++|.+ ++..++.++ ....++..+...|.+++|+++.+.....-.+...+|+++.|.++.+.+. +...|.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~ 685 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDES--AEMKWR 685 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCC--CHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhC--cHhHHH
Confidence 35678888877 554433111 2266777777788888877665433222245567899999999988774 567899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 242 (645)
.|...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-..+...|- ++....+|.++|
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g 750 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAG 750 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcC
Confidence 999999999999999999998853 44455555557777766666555555441 234445577778
Q ss_pred CHHHHHHHHcc
Q 048812 243 KIGEAQKLLGR 253 (645)
Q Consensus 243 ~~~~A~~~~~~ 253 (645)
++++|.+++.+
T Consensus 751 ~~~~a~~~~~~ 761 (814)
T 3mkq_A 751 DIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888777765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.012 Score=58.24 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=65.8
Q ss_pred cCChhHHHHHHHHHHH--cCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc---c-----CcHHHHHHHHHHhH
Q 048812 352 EKNVYLWTSVIAAYAM--AGH---AQKAIDLFLEMEETGTKPD-QVTFIALLSACSH---G-----GLVDEGYDFLSKKS 417 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~---~-----g~~~~a~~~~~~~~ 417 (645)
..+...|...+.+... .+. ..+|+.+|++..+. .|+ ...+..+..++.. . .......+.++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4577888888876553 333 47899999999884 676 3444444444330 0 00001011111111
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
.......+..+|..+.-.+...|++++|...+++. ...|+...|..+...+...|+.++|.+.+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00011223444444444444445555555555444 223444444444444445555555555555555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0057 Score=62.99 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=63.1
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVY--NIKPK----MQHYGCMVDLLGRAGHLEESANFITSM---------PIPPDV-SIWSSLL 465 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ll 465 (645)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777776655321 12222 466777777787888888777777664 234544 4678888
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----cCCCCchh
Q 048812 466 RACRCHQNVKLAEHAFKHLTE-----TDPLNDGA 494 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 494 (645)
..|..+|++++|+.+++++++ ++|+.|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 888888888888888888877 56776544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0026 Score=65.51 Aligned_cols=102 Identities=10% Similarity=-0.054 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCc---hhHHHHHH
Q 048812 439 AGHLEESANFITSM---------PIPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTE-----TDPLND---GAHVLLAN 500 (645)
Q Consensus 439 ~g~~~~A~~~~~~m---------~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~y~~l~~ 500 (645)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+.+ ..|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 47888888887664 233443 5899999999999999999999999987 456655 46778999
Q ss_pred HHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHH
Q 048812 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558 (645)
Q Consensus 501 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l 558 (645)
+|...|++++|..++++..+.-.. .=...||.+.++...|
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHH
Confidence 999999999999999987552110 1123788888777554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.01 Score=61.13 Aligned_cols=100 Identities=10% Similarity=-0.044 Sum_probs=67.3
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHH
Q 048812 398 SACSHGGLVDEGYDFLSKKSRVYN--IKPK----MQHYGCMVDLLGRAGHLEESANFITSM---------PIPPDV-SIW 461 (645)
Q Consensus 398 ~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~ 461 (645)
..+...|++++|.+++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334455666677666666553211 1222 456677777777777777777776654 234543 478
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCchhHHH
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTE-----TDPLNDGAHVL 497 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~y~~ 497 (645)
+.|...|...|++++|+.+++++++ ++|+.|.+-.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8899999999999999999999987 67887655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0094 Score=50.83 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCcee
Q 048812 456 PDVSIWSSLLRACRCHQ---NVKLAEHAFKHLTETD-P-LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 530 (645)
++..+.-.+..++.+.+ +.++|..+++++++.+ | .+...++.|.-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------
Confidence 56777777777777777 5668888888888877 6 44667778888888888888888888888662
Q ss_pred EEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc
Q 048812 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571 (645)
Q Consensus 531 ~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 571 (645)
.|...++....+.+..++.+.|++
T Consensus 101 -----------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 -----------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 345555666666667777778775
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.1 Score=42.75 Aligned_cols=139 Identities=11% Similarity=0.127 Sum_probs=102.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 446 (645)
-.|..++..++..+.... .+..-++.+|--...+-+-+-..++++.+-+-+.+. .+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHHH
Confidence 467788888888887764 355667777766666666667777777776544443 345555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 447 ~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
..+-.++ .+......-++....+|..++-.++...++..+|.++....-++++|.+.|...+|.+++++.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555554 344556667788889999999999999977777777888899999999999999999999999999974
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0049 Score=50.19 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
.+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+.++|...|++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777778888888888888888777652 22456677777777778888888888777664
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0084 Score=47.45 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=59.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
.+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+...-.++......+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 466788888999999999999999999988753 2246678888888999999999999988877432222344443333
Q ss_pred HHHH
Q 048812 433 VDLL 436 (645)
Q Consensus 433 i~~~ 436 (645)
...+
T Consensus 84 ~~~l 87 (100)
T 3ma5_A 84 QDAK 87 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.032 Score=59.78 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhH
Q 048812 353 KNVYLWTSVIAAYAMAG-HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG--------------GLVDEGYDFLSKKS 417 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~ 417 (645)
+|..+|+.-.-.+.+.| .++++++.++++++..+. |...|+.....+.+. +.++++.++++++.
T Consensus 141 ~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 141 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHH
Confidence 45555665555555666 666666666666654222 444554444433331 44566666666665
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCC
Q 048812 418 RVYNIKP-KMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 418 ~~~~~~p-~~~~~~~li~~~~~~g~ 441 (645)
. +.| +...|.-+-.++.+.++
T Consensus 220 ~---~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 220 F---TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp H---HCSSCSHHHHHHHHHHSCCCC
T ss_pred h---hCCCCccHHHHHHHHHhcCCC
Confidence 3 344 34555555555555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.011 Score=46.27 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DVS-IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...|+++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667788888888888776 3334 556 788888889999999999999999999999887766
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0078 Score=47.25 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=53.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDG-AHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
....+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999987644
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.053 Score=53.70 Aligned_cols=133 Identities=10% Similarity=0.042 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH----HcC-------CHHHHHHH
Q 048812 386 TKPDQVTFIALLSACSH-----GGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLG----RAG-------HLEESANF 448 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 448 (645)
.+.|...|...+.+... .....+|..+|++..+ +.|+ ...|..+.-+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 44556667666665432 2345789999999985 5787 344443333322 111 12223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 449 ITSMP-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 449 ~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
...+. .+.+..+|.++.-.+...|++++|...++++++++|. ...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 23332 3457888888888888889999999999999999974 6788899999999999999999999887654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.00011 Score=73.94 Aligned_cols=321 Identities=12% Similarity=0.128 Sum_probs=196.0
Q ss_pred cCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 048812 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219 (645)
Q Consensus 140 ~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (645)
.++++.|.+.-++..+| ..|.-|..++.+.++..+|++.|-+. -|+..|..++.++.+.|.++.-...+..+
T Consensus 38 i~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 38 IGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp GCCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34555555544444444 45888999999999999998877332 26677899999999999999888877666
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc-----------
Q 048812 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV----------- 288 (645)
Q Consensus 220 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------- 288 (645)
.+. ..++.+=+.|+-+|+|.+++.+-.+++. .||+.--..+..-|...|.++.|.-+|..+.
T Consensus 110 Rk~--~ke~~IDteLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~ 182 (624)
T 3lvg_A 110 RKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH 182 (624)
T ss_dssp STT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSS
T ss_pred HHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHH
Confidence 554 4455667889999999999876555543 4666666778888888888888888887763
Q ss_pred -------------cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCCh
Q 048812 289 -------------ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNV 355 (645)
Q Consensus 289 -------------~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~ 355 (645)
..+..||..+- .+|...+.+..+...--.++- .+|
T Consensus 183 L~~yq~AVdaArKAns~ktWKeV~------------~ACvd~~EfrLAqicGLniIv-------------------had- 230 (624)
T 3lvg_A 183 LGEYQAAVDGARKANSTRTWKEVC------------FACVDGKEFRLAQMCGLHIVV-------------------HAD- 230 (624)
T ss_dssp CSGGGSSTTTTTTCCSSCSHHHHT------------HHHHHSCTTTTTTHHHHHHHC-------------------CSS-
T ss_pred HHHHHHHHHHHHhcCChhHHHHHH------------HHHhCchHHHHHHHhcchhcc-------------------cHH-
Confidence 23445666555 445444444433322111111 111
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC------ChHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP------KMQHY 429 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~ 429 (645)
-...++.-|-..|.+++-+.+++.-... -+.....|+-|.-.|++- .+++-.+.++.....-++.- ....|
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 1123455677788888888888776532 234566676666666653 34444444433322222211 24567
Q ss_pred HHHHHHHHHcCCHHHHHHHHH-------------hC--C--------------CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048812 430 GCMVDLLGRAGHLEESANFIT-------------SM--P--------------IPPDVSIWSSLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~-------------~m--~--------------~~pd~~~~~~ll~a~~~~g~~~~a~~~ 480 (645)
.-++-+|..-..+|.|...+- +. . ++-.+...+-|+.++...=|..+..++
T Consensus 308 ~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~ 387 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNY 387 (624)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHH
Confidence 888888888888887654321 11 0 111122235566666666667777777
Q ss_pred HHHHHh----------c-CCCCchhHHHHHHHHHHcCCchH
Q 048812 481 FKHLTE----------T-DPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 481 ~~~~~~----------~-~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
|++.-. . +-++..+-.++-++|....+++.
T Consensus 388 ~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 388 FSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 776532 1 22334445577778887777653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.071 Score=42.40 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-----P----IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 344455666666677777766666553 0 1234668889999999999999999999999999999876644
Q ss_pred HH
Q 048812 497 LL 498 (645)
Q Consensus 497 ~l 498 (645)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.041 Score=52.21 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=62.0
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHc-CCchHH
Q 048812 443 EESANFITSM-PIPPD---VSIWSSLLRACRC-----HQNVKLAEHAFKHLTETDPLN-DGAHVLLANIYAKA-GRLDDM 511 (645)
Q Consensus 443 ~~A~~~~~~m-~~~pd---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~-g~~~~a 511 (645)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++...+.|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444443 34454 4566777777776 488999999999999999864 88888888888884 888999
Q ss_pred HHHHHHHHhCCCcccCc
Q 048812 512 SRIRMKLRDMGLKKQLG 528 (645)
Q Consensus 512 ~~~~~~m~~~~~~~~~~ 528 (645)
.+.+++.........|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99988888766543344
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.11 Score=58.39 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=89.4
Q ss_pred CcHHHHHH-HHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048812 338 DNIELAYD-LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 338 ~~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 416 (645)
+++++|.+ ++..++ +......++..+.+.|..++|+++.+.- + .-| ......|++++|.++.+.
T Consensus 613 ~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-~~f----~~~l~~~~~~~A~~~~~~- 677 (814)
T 3mkq_A 613 GEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-QKF----ELALKVGQLTLARDLLTD- 677 (814)
T ss_dssp TCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-HHH----HHHHHHTCHHHHHHHHTT-
T ss_pred CCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc-------c-hhe----ehhhhcCCHHHHHHHHHh-
Confidence 46777777 554443 1122377778888889999888766321 1 112 223457889998887533
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc----
Q 048812 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND---- 492 (645)
Q Consensus 417 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~---- 492 (645)
..+...|..|.+++.+.|+++.|++.|.+++. |..+...+...|+.+...++.+.+...+..+.
T Consensus 678 ------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~ 745 (814)
T 3mkq_A 678 ------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNA 745 (814)
T ss_dssp ------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 24568899999999999999999999998752 23333334445555554444444433221110
Q ss_pred ----hhHHHHHHHHHHcCCchHHHHHHH
Q 048812 493 ----GAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 493 ----~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
+-+...+++|.+.++|++|..+.+
T Consensus 746 ~~~~g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 746 YWIAGDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHcCChHHHHHHHH
Confidence 112234455555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.13 Score=42.06 Aligned_cols=65 Identities=8% Similarity=-0.150 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 456 PDVSIWSSLLRACRCHQNVKL---AEHAFKHLTETD-P-LNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|+..+--.+..++.+.++... ++.+++.+...+ | ..-...+.|+-++.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444333 555555555544 3 2223444555566666666666666665544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.2 Score=38.82 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 424 PKMQHYGCMVDLLGRAGH---LEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 424 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...|+++++.+|.+ .-...+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence 356666677777665554 57777777775 3444 56677777788888999999999999999988873 333344
Q ss_pred HH
Q 048812 499 AN 500 (645)
Q Consensus 499 ~~ 500 (645)
..
T Consensus 83 ~~ 84 (93)
T 3bee_A 83 IE 84 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.73 Score=40.18 Aligned_cols=127 Identities=11% Similarity=0.085 Sum_probs=89.4
Q ss_pred hccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 048812 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217 (645)
Q Consensus 138 ~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (645)
..+|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-..+-.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 4678999998887766 4677899999999999999999999998753 4444445556677777666655
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 218 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.....| . +|.....+.-.|+++++.++|.+ ... |.--+......|..+.|.++.+++.
T Consensus 85 iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~--~~r-----~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 85 IAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE--GGS-----LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH--TTC-----HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH--CCC-----hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 555544 2 34455567778999999999987 332 1111112223677888888887764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.15 Score=43.29 Aligned_cols=90 Identities=14% Similarity=0.038 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 048812 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGG---LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 372 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
..+.+-|.+....|. ++..+-..+..++.+++ ++++|+.+|+...+.. .|+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~----------------------- 68 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE----------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH-----------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc-----------------------
Confidence 444555555544443 45555555666666666 5556666666665421 121
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 449 ~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
-....+-.|.-+|.+.|++++|.+.++.+++.+|++..+
T Consensus 69 -------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 69 -------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp -------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 012334456667899999999999999999999988544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=1.6 Score=36.35 Aligned_cols=90 Identities=10% Similarity=0.054 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 456 PDVSIWSSLLRACRCHQ---NVKLAEHAFKHLTETDPLND-GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~~~-~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
|+..+--.+..++.+.. +..+++.+++.+....|... ...+.|+-+|.+.|++++|.++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---------- 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---------- 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------
Confidence 45444444445555544 34567777777777766433 34456777788888888888888777652
Q ss_pred EEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc
Q 048812 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571 (645)
Q Consensus 532 i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 571 (645)
.|...++...-..+..+|.+.|++
T Consensus 107 ----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 ----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 344555555555666777777765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=1.6 Score=35.84 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=97.6
Q ss_pred hcCChHHHHHHHhhCC-CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHH
Q 048812 85 FTGDLGYAQQIIRQGD-EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163 (645)
Q Consensus 85 ~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~ 163 (645)
-.|..++-.++..+.. +.+..-||-+|--....-+-+-..+.++..-+. --...||++......+-.+. .+....+.
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~C~~~~n-~~se~vd~ 96 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINN-TLNEHVNK 96 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTT-CCCHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHHHHHHhc-chHHHHHH
Confidence 3567777777776654 334444565555555555544444444443221 22357888888888887765 45566778
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 048812 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225 (645)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 225 (645)
.+..+..+|.-++--+++..+.. ..+|++.....+..||.+.|+..++.+++.++.+.|++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 88999999999999999998644 34788888889999999999999999999999888854
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.053 Score=55.03 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=153.3
Q ss_pred ChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHH
Q 048812 40 VSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLI 116 (645)
Q Consensus 40 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 116 (645)
|...|..|+.++ +..++...-+....+. ..++.+-+.|+-+|++.+++.+-...+ ..||+.-...+..-|..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 156 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHH
Confidence 444567777776 4555554444433333 457788899999999999877654433 35777778888888889
Q ss_pred cCChhHHHHHHHHHhhcC---chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 048812 117 NGYPQEVFAIYLYLVTRT---VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193 (645)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~---~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (645)
.|.++.|.-+|..+.... ..+.+.|++..|.+.-++ ..++.+|--+-.+|...+.+.-|--.--.++-. ||
T Consensus 157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad- 230 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD- 230 (624)
T ss_dssp SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS-
T ss_pred ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH-
Confidence 999998888887765543 556666777666543322 257889999999999999988776554444422 22
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHccc--CCCCC-------ChhhH
Q 048812 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY--EIDEV-------DVVLW 264 (645)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~-------~~~~~ 264 (645)
....++..|...|.+++-..+++.-+... .....+++-|.-.|+|-. .++-.+-++.. ++.-| ....|
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 23345667888888888877777655221 456778888888888763 34333333221 11112 44568
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 048812 265 TTLVSGYVKSNERDEARR 282 (645)
Q Consensus 265 ~~li~~~~~~g~~~~A~~ 282 (645)
.-++-.|.+..++|.|..
T Consensus 308 ~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcchhHHHHHH
Confidence 899999998888887754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.14 Score=48.67 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=60.9
Q ss_pred HHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHHc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCCh
Q 048812 407 DEGYDFLSKKSRVYNIKPK---MQHYGCMVDLLGRA-----GHLEESANFITSM-PIPPD--VSIWSSLLRACRC-HQNV 474 (645)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~pd--~~~~~~ll~a~~~-~g~~ 474 (645)
..|...+++..+ +.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 344444444442 4565 44666666666663 7777777777665 44452 5556666666666 4788
Q ss_pred HHHHHHHHHHHhcCCCC-chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 475 KLAEHAFKHLTETDPLN-DGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+++.+.++++++..|.. |. ..+.+... -++|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~--~~lan~~~----q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH--NKLLVILS----QKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS--CHHHHHHH----HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCC--hhHHHHHH----HHHHHHHHHHhH
Confidence 88888888888877652 22 23333333 345655555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.70 E-value=0.45 Score=37.53 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-------PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+..-+-.|...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556678888999999999999999998842 33456788999999999999999999998865
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.05 E-value=2.2 Score=37.17 Aligned_cols=98 Identities=9% Similarity=-0.030 Sum_probs=52.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~ 481 (645)
..|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|++.+ | +..|.--|...|+.+.-.++.
T Consensus 17 ~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---D---~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH---S---FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---C---HHHHHHHHHHhCCHHHHHHHH
Confidence 456666666655433 245566666666666666666666666654 2 223333344455555544444
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 482 ~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
+.....+- +..-...+.-.|+.+++.+++.+
T Consensus 84 ~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44333221 23333445566777777766643
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.95 E-value=2.7 Score=32.24 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048812 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 187 (645)
+++...+...+. +++..+.+-+- +...|++++|..+.+...-||++.|-+|-.. +.|..+++..-+.++-.+
T Consensus 27 ~tIAdwL~~~~~-~E~v~lIR~sS-----LmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 27 NCIAEWLHLKGE-EEAVQLIRLSS-----LMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHH-----HHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHH-----HHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 444555555566 66666665543 2567999999999999999999999888654 667777777777777777
Q ss_pred CCCCChhhHH
Q 048812 188 GVSPDEVTMV 197 (645)
Q Consensus 188 g~~p~~~t~~ 197 (645)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 44444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.91 E-value=1.7 Score=36.58 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|+++|..+|+.++++...-+..+...+..-.+.|+.+.|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 566666666666666543334555556666666666666666666665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.78 E-value=1.3 Score=48.48 Aligned_cols=52 Identities=13% Similarity=-0.114 Sum_probs=48.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
-|...|+++.|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3677899999999999999999999999999999999999999999999887
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=24 Score=37.73 Aligned_cols=112 Identities=9% Similarity=0.069 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTF----IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 444 (645)
.+.+.|..+|......+ ..+.... ..+.......+...++...+..... ..++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 37788999998886543 2233222 2233333444534455556665442 22333334444445557899999
Q ss_pred HHHHHHhCCCCC-C-H--HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 445 SANFITSMPIPP-D-V--SIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 445 A~~~~~~m~~~p-d-~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
|...|+.|+..+ + . .-| +..+....|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW--~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYW--QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHH--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996433 2 2 233 33466778999999999999875
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.51 E-value=1.8 Score=35.49 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 474 VKLAEHAFKHLTETDPLN-DGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+|+.+++.+...+|.. ......|+-++.+.|++++|.+..+.+.+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345666666666655532 33445566666677777777776666644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.37 E-value=2.4 Score=34.53 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
-.|.-++.+.|+++.|.+.++.+++.+|+|..+.
T Consensus 78 Y~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 78 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455678889999999999999999999885543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.29 E-value=2.6 Score=32.30 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048812 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 187 (645)
+++...+...+. +++..+.+-+- +...|++++|..+.+...-||+++|-+|-. .+.|..+++..-+.++-.+
T Consensus 26 ~tIAdwL~~~~~-~E~v~lIR~sS-----LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 26 LCIAEWLERLGQ-DEAARLIRISS-----LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHH-----HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHH-----HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 444555555566 66666665543 256799999999999999999999988865 4678888887777788777
Q ss_pred CCCCChhhHH
Q 048812 188 GVSPDEVTMV 197 (645)
Q Consensus 188 g~~p~~~t~~ 197 (645)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 44444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.66 E-value=5.2 Score=33.63 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.0
Q ss_pred CcCChhHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCC
Q 048812 351 SEKNVYLWTSVIAAYAMAGHA------QKAIDLFLEMEETGTKPD 389 (645)
Q Consensus 351 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd 389 (645)
...|..+|-..+...-+.|++ ++..++|++.... ++|+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 356788888888888888998 8888888888775 6775
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.68 E-value=1.9 Score=43.38 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCcccC
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD-----MGLKKQL 527 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 527 (645)
..++.++...|+.+++...++.++..+|-+...|..|+.+|.+.|+..+|.+.++..++ .|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44566677788888888888888888888888888888888888888888888877643 4665544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.49 E-value=22 Score=36.24 Aligned_cols=181 Identities=8% Similarity=0.089 Sum_probs=113.4
Q ss_pred CcHHHHHHHHhhcCc-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHh----cc
Q 048812 338 DNIELAYDLFSEISE-----K----NVYLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPDQVTFIALLSACS----HG 403 (645)
Q Consensus 338 ~~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~----~~ 403 (645)
++++.|.+.+-.+.. . .......++..|...|+++...+.+.-+.. .|..+..++ .++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 366777766644332 2 234567788999999999998887776653 343333332 3333222 22
Q ss_pred CcHHH--HHHHHHHhHH--hcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCC---HHHHHHHHHHH
Q 048812 404 GLVDE--GYDFLSKKSR--VYNIKP---KMQHYGCMVDLLGRAGHLEESANFITSMP-----IPPD---VSIWSSLLRAC 468 (645)
Q Consensus 404 g~~~~--a~~~~~~~~~--~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~pd---~~~~~~ll~a~ 468 (645)
...+. -......... +..+-. .......|...|...|++.+|.+++..++ ..+. ...+.-.++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1222211110 001111 12345678899999999999999999873 1111 34667778889
Q ss_pred HhcCChHHHHHHHHHHHh---cCCCCc----hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 469 RCHQNVKLAEHAFKHLTE---TDPLND----GAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~---~~p~~~----~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...+|+..|..+++++.. ..+.++ ..|...+.++...++|.+|.+.|.+.-+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999753 223332 3567888889999999999888776643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.71 E-value=36 Score=32.92 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=63.3
Q ss_pred HhcCChHHHHHHH----HHHhhCCCCCChhhHHHHHHHHhcCCChH-----HHHHHHHHHHHhC--CCCchhHHHHHHHH
Q 048812 169 TSMGMYREGLGLL----SKMGAEGVSPDEVTMVSLISARTKLRDLE-----MGKNLHLFLEEST--MKISGSLLNYLVDM 237 (645)
Q Consensus 169 ~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~ 237 (645)
.+.|+...|-++- +-+.+.++++|..+...++..+.....-+ -..+...+-.+.| ..-|+.....+...
T Consensus 66 l~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~ 145 (336)
T 3lpz_A 66 LRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTL 145 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 3444444443333 33344566677766666666665544321 1122233333444 33477888889999
Q ss_pred HHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHH
Q 048812 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278 (645)
Q Consensus 238 y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~ 278 (645)
|.+.+++.+|+.-|-. ...++...+..|+.-+...+...
T Consensus 146 ~~~e~~~~~Ae~H~il--g~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 146 YVEEGEFEAAEKHLVL--GTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp HHHTTCHHHHHHHHTT--SCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HHccCCHHHHHHHHHh--cCCchHHHHHHHHHHHHHhcCCc
Confidence 9999999999998843 33334467777776666655433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.34 E-value=39 Score=32.38 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=66.2
Q ss_pred HHhcCChHHHHHH----HHHHhhCCCCCChhhHHHHHHHHhcCCC--h---HHHHHHHHHHHHhCC--CCchhHHHHHHH
Q 048812 168 YTSMGMYREGLGL----LSKMGAEGVSPDEVTMVSLISARTKLRD--L---EMGKNLHLFLEESTM--KISGSLLNYLVD 236 (645)
Q Consensus 168 ~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~---~~a~~~~~~~~~~g~--~~~~~~~~~li~ 236 (645)
+.+.|+...|-++ .+-..+.++++|..+...++..+..... . .-..+...+..+.|- .-|+.....+..
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 3344555444443 3444455677777776666666554321 1 122233333333332 247788899999
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhc---CCHHHH
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS---NERDEA 280 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~---g~~~~A 280 (645)
.|.+.|++.+|+.-|-. ....|...+..|+.-+... |...++
T Consensus 143 ~~~~e~~~~~A~~H~i~--~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 143 KLLEGDFVYEAERYFML--GTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp HHHHTTCHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHhhcCCHHHHHHHHHh--CCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 99999999999998753 2222566777777666665 666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.29 E-value=8.5 Score=29.74 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=38.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 451 ~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
.+-.-|++.+..+.+.||++.+|+..|.++++-+...-.+....|-.++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3456799999999999999999999999999988875433345565553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.03 E-value=4.6 Score=44.13 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHhhCCCCCChhh-H-HHHHHHHhcCCC-hHHHHHHHHHHHHh------CCCC-c-----
Q 048812 164 MISCYTSMGM-YREGLGLLSKMGAEGVSPDEVT-M-VSLISARTKLRD-LEMGKNLHLFLEES------TMKI-S----- 227 (645)
Q Consensus 164 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t-~-~~ll~~~~~~~~-~~~a~~~~~~~~~~------g~~~-~----- 227 (645)
++..+...++ .+.|+.+|+++... .|...+ | ..++......++ --+|.++..+.++. ..++ +
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 4444444566 57899999999886 343332 2 233333333332 12244444333321 1111 1
Q ss_pred -----hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 228 -----GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 228 -----~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
....+.-.+.+...|+++-|+++-++.....| +-.+|..|..+|...|+++.|+-.+..++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234556678999999999887433455 67899999999999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 645 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.8 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.73 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.72 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.64 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.35 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.26 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.22 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.21 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.18 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.0 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.85 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.84 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.81 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.53 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.47 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.35 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.32 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.31 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.18 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.18 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.14 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.92 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.59 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.94 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.67 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.0 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 90.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.57 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.1e-19 Score=183.07 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=124.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
.+...|..+...|.+.|++++|+..|++..+. .|+ ..++..+..++...|+.++|.+.++..... .+.+...+..
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 310 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNN 310 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhH
Confidence 45566777888888999999999999988874 444 677888888889999999999999887753 2345677888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.+|..|+.+|.+.|+
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 888899999999999999875 5556 466788888889999999999999999999999998899999999887764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.1e-18 Score=177.70 Aligned_cols=356 Identities=14% Similarity=0.082 Sum_probs=276.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCC
Q 048812 79 VFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155 (645)
Q Consensus 79 ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~ 155 (645)
+...+.+.|++++|.+.|+++. +.+..+|..+...|.+.|++++|+..|+++.+. ..
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------~p 64 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------------------NP 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------CT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------CC
Confidence 4566778899999999998864 335677888888888888888888877765421 11
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 235 (645)
.+..+|..+...|.+.|++++|++.+........ .+............................... ...........
T Consensus 65 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 142 (388)
T d1w3ba_ 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCHHHHHHHHHHhhhhcccccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 3456788899999999999999999998887632 233344444444445555555555555554444 34444555566
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhh
Q 048812 236 DMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSC 314 (645)
Q Consensus 236 ~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~ 314 (645)
......+....+...+.......| +...+..+...+...|++++|...+++..+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------- 199 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----------------------- 199 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred ccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-----------------------
Confidence 666777777777777665323334 56678888888888999999988887654322
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048812 315 ASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFI 394 (645)
Q Consensus 315 ~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 394 (645)
+.+..+|..+...+...|++++|+..|++..... ..+...+.
T Consensus 200 -------------------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 200 -------------------------------------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp -------------------------------------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred -------------------------------------cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 2355678888999999999999999999998863 34577788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCH 471 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~ 471 (645)
.+..++...|++++|.+.|++..+ +.|+ ...+..+...|...|++++|.+.++.. ..+.+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 888999999999999999999885 4564 778999999999999999999999886 3445778899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|++++|+..+++++++.|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.2e-13 Score=132.71 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ----------------VTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
...|..+...|...|++++|++.+++.... .|+. ......+..+...+..+++.+.|.+..+
T Consensus 87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 87 QTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555555566666666666666655542 1111 0111122233344667788888888775
Q ss_pred hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 419 VYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 419 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
...-.++...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.+|.
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 244 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence 4434445778888999999999999999999886 3334 5778999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.++.+|.+.|++++|.+.+++..+.
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988663
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2e-12 Score=127.70 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=110.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCH
Q 048812 365 YAMAGHAQKAIDLFLEMEETG-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 442 (645)
+...+.+.+|...|.+..+.. -.++...+..+...+...|++++|...|++... ..|+ ...|..+...|.+.|++
T Consensus 146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~ 222 (323)
T d1fcha_ 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQS 222 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccc
Confidence 344566778888888776543 234567777888888889999999999988875 3454 67788889999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh-----------HHHHHHHHHHcCCch
Q 048812 443 EESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA-----------HVLLANIYAKAGRLD 509 (645)
Q Consensus 443 ~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------y~~l~~~~~~~g~~~ 509 (645)
++|.+.+++. ...| +..+|..+..+|...|++++|+..|++++++.|++... +..+..++...|+.+
T Consensus 223 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d 302 (323)
T d1fcha_ 223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 302 (323)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred hhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999998876 4445 56789999999999999999999999999988876543 345666777777776
Q ss_pred HHHH
Q 048812 510 DMSR 513 (645)
Q Consensus 510 ~a~~ 513 (645)
.+..
T Consensus 303 ~~~~ 306 (323)
T d1fcha_ 303 AYGA 306 (323)
T ss_dssp GHHH
T ss_pred HHHH
Confidence 5543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=6.7e-08 Score=95.03 Aligned_cols=164 Identities=16% Similarity=0.086 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGT----KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-----MQ 427 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~ 427 (645)
.+..+...+...|+++.|...+........ .....++......+...+....+...+........-... ..
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 345566677788888888888877765422 222445555666677778888887777666543222221 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh------cCCCCchhH
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPP-----DVSIWSSLLRACRCHQNVKLAEHAFKHLTE------TDPLNDGAH 495 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~------~~p~~~~~y 495 (645)
.+..+...+...|++++|...+++. ...| ....+..+..++...|++++|...+++++. ..|....++
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 4566677788899999999998876 2211 244566788889999999999999999875 234455678
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..++.+|...|++++|.+.+++..+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999987654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=5.5e-08 Score=94.60 Aligned_cols=214 Identities=9% Similarity=0.033 Sum_probs=147.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLR-DLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
.+|+.+-..+.+.+.+++|+++++++++. .|+.. .|+....++...+ ++++|...+..+++.. +-+..+|+.+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 46777778888899999999999999886 55544 6677777777765 5899999999988876 567888888888
Q ss_pred HHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
.+.+.|++++|...|+.+....| +...|+.+...+.+.|++++|++.|+++.+.|+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p----------------------- 177 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----------------------- 177 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-----------------------
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-----------------------
Confidence 99999999999999987543344 788899999999999999999988888764432
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCC
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGH------AQKAIDLFLEMEETGTKPD 389 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~pd 389 (645)
.+...|+.+...+...+. +++|++.+.+..+.. +-|
T Consensus 178 -------------------------------------~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~ 219 (315)
T d2h6fa1 178 -------------------------------------RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHN 219 (315)
T ss_dssp -------------------------------------TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred -------------------------------------ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCc
Confidence 345556655555555444 467777777776642 224
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLG 437 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 437 (645)
...+..+...+...| .+++.+.++...+......+...+..+++.|.
T Consensus 220 ~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 220 ESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 555655555555444 35566666665532111122344455555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=3.6e-08 Score=95.94 Aligned_cols=159 Identities=12% Similarity=0.177 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 432 (645)
+..+|+.+...+...|++++|++.|+++.+.. +-+...|..+...+.+.|++++|.+.++++.+ +.| +...|+.+
T Consensus 111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r 186 (315)
T d2h6fa1 111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQR 186 (315)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHH
Confidence 34455555555555555555555555555531 12345555555555555555555555555553 234 24444444
Q ss_pred HHHHHHcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc--hhHHHHHHHH
Q 048812 433 VDLLGRAGH------LEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND--GAHVLLANIY 502 (645)
Q Consensus 433 i~~~~~~g~------~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~--~~y~~l~~~~ 502 (645)
..++.+.+. +++|.+.+.+. ...| +...|..+...+.. ...+++...+++..++.|... ..+..++.+|
T Consensus 187 ~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 187 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 444444443 45666655553 3334 56677776655544 446788888998888887644 3445677777
Q ss_pred HHc--CCchHHHHHHHH
Q 048812 503 AKA--GRLDDMSRIRMK 517 (645)
Q Consensus 503 ~~~--g~~~~a~~~~~~ 517 (645)
... +..+.+...+++
T Consensus 266 ~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 266 EDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHTTCSSHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHH
Confidence 543 444444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=3.5e-09 Score=104.42 Aligned_cols=274 Identities=12% Similarity=-0.004 Sum_probs=181.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhh-HHH---HHHHHhcC-------CChHHHHHHHHHHHHhCCCCchh
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT-MVS---LISARTKL-------RDLEMGKNLHLFLEESTMKISGS 229 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~---ll~~~~~~-------~~~~~a~~~~~~~~~~g~~~~~~ 229 (645)
++.++......+..++|++++++..+. .|+..+ |+. ++...... +.++++...+..+++.. +.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 344444444444558999999988865 566543 322 22333332 34566777777777665 45666
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHcccCCCC-CChhhHHHHH-HHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhcc
Q 048812 230 LLNYLVDMYFKCGK--IGEAQKLLGRYEIDE-VDVVLWTTLV-SGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305 (645)
Q Consensus 230 ~~~~li~~y~~~g~--~~~A~~~~~~m~~~~-~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~ 305 (645)
.+..+...+...+. .++|...++...... ++...|...+ ..+...+.+++|+..++.....++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p------------- 175 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF------------- 175 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-------------
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-------------
Confidence 66666666666554 677777777632223 3455555433 556667778888887777665442
Q ss_pred CCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 306 ~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
.+..+|+.+...+...|++++|...+.+....
T Consensus 176 -----------------------------------------------~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~- 207 (334)
T d1dcea1 176 -----------------------------------------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV- 207 (334)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH-
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh-
Confidence 46677888888888888888877666554432
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSS 463 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ 463 (645)
.|+.. .+...+...+..+++...+...... -.++...+..+...+...|+.++|.+.+.+. +..| +..+|..
T Consensus 208 -~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 281 (334)
T d1dcea1 208 -LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 281 (334)
T ss_dssp -HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHH
Confidence 22222 2223344455566677777766632 2234555666777888889999999988876 5555 4568888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
+...+...|+.++|...++++++++|.+...|..|...+.-
T Consensus 282 l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 282 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 99999999999999999999999999888888878776653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=2.2e-08 Score=94.39 Aligned_cols=203 Identities=14% Similarity=0.002 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCC
Q 048812 229 SLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307 (645)
Q Consensus 229 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~ 307 (645)
.++..+..+|.+.|++++|...|++.....| +..+|+.+..+|.+.|++++|++.|++..+-+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------- 101 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---------------- 101 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH----------------
Confidence 3555667778888888888888877433344 67788888888888888888888887765332
Q ss_pred chhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 048812 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK 387 (645)
Q Consensus 308 ~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 387 (645)
+.+..+|..+...|...|++++|+..|++..+.. +
T Consensus 102 --------------------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 136 (259)
T d1xnfa_ 102 --------------------------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-P 136 (259)
T ss_dssp --------------------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred --------------------------------------------hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-c
Confidence 1245567778888888889999998888887753 2
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc----CCHHHHHHHHHhC-CCCCC-HHHH
Q 048812 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA----GHLEESANFITSM-PIPPD-VSIW 461 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~pd-~~~~ 461 (645)
.+......+..++...+..+....+...... ..+....++. +..+... +..+.+...+... ...|+ ..+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (259)
T d1xnfa_ 137 NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 212 (259)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHH
Confidence 2344444444455555555555554444442 2222222222 2222111 1222222222211 11232 3467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
..|...+...|++++|...|+++++.+|++...|.
T Consensus 213 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 213 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 77888899999999999999999999998755543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=4.3e-07 Score=87.88 Aligned_cols=188 Identities=9% Similarity=0.070 Sum_probs=131.0
Q ss_pred CCHHHHHHHHcccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccc
Q 048812 242 GKIGEAQKLLGRYEI--DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 242 g~~~~A~~~~~~m~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
+..++|..+|++... ...+...|...+..+.+.|+.++|..+|+++...+.
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~--------------------------- 130 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED--------------------------- 130 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS---------------------------
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc---------------------------
Confidence 345677777776322 223566788888888888888888888877653221
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLS- 398 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~- 398 (645)
......|...+..+.+.|+.++|.++|+++.+.+.. +...|.....
T Consensus 131 --------------------------------~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~ 177 (308)
T d2onda1 131 --------------------------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALM 177 (308)
T ss_dssp --------------------------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHH
T ss_pred --------------------------------CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 112345778888888888888999999888876432 2333333322
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM----PIPPD--VSIWSSLLRACRCHQ 472 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd--~~~~~~ll~a~~~~g 472 (645)
-+...|+.+.|..+|+.+.+.+ ..+...|...++.+.+.|+++.|..+|++. +..|+ ...|...+.--..+|
T Consensus 178 e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G 255 (308)
T d2onda1 178 EYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC
Confidence 2345678888998888888542 234677888888888888888888888875 33443 457888888878888
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q 048812 473 NVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~ 491 (645)
+.+.+..+.+++.+..|..
T Consensus 256 ~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 256 DLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHCccc
Confidence 8888888888888877755
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=7.1e-07 Score=87.40 Aligned_cols=203 Identities=9% Similarity=0.003 Sum_probs=119.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHh----CCCC---
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGV-SPD----EVTMVSLISARTKLRDLEMGKNLHLFLEES----TMKI--- 226 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~--- 226 (645)
.+++.+...|...|++++|+..|++..+... .++ ..++..+...+...|++..+...+...... +...
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~ 131 (366)
T d1hz4a_ 52 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 131 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhH
Confidence 4567777888888888888888887754211 111 124455556677778888887777766542 1111
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCC------CChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE------VDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
....+..+...|...|+++.|...++...... ....++..+...+...+...++...+.+..
T Consensus 132 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~------------ 199 (366)
T d1hz4a_ 132 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE------------ 199 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------------
Confidence 12344556677777888888777776521111 123344555556666677776666654432
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
.++..... .....+..+...+...|++++|...
T Consensus 200 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 235 (366)
T d1hz4a_ 200 --------------------------------------------NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235 (366)
T ss_dssp --------------------------------------------HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------------HHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHH
Confidence 12221111 1123455666777788888888888
Q ss_pred HHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 378 FLEMEETGTKP---DQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 378 ~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
+.+........ ...++..+..++...|++++|.+.++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 278 (366)
T d1hz4a_ 236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 278 (366)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87765432211 23445556667777777777777776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=3.8e-07 Score=88.23 Aligned_cols=166 Identities=7% Similarity=0.011 Sum_probs=133.6
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 431 (645)
.+...|...+..+...|+.++|..+|+++...........|...+..+.+.|.++.|.++|+.+.+. .| +...|..
T Consensus 97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~---~~~~~~~~~~ 173 (308)
T d2onda1 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVT 173 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHH
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCcHHHHHH
Confidence 4566788889999999999999999999987533333567889999999999999999999998853 33 3444544
Q ss_pred HHHHH-HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch----hHHHHHHHHHH
Q 048812 432 MVDLL-GRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG----AHVLLANIYAK 504 (645)
Q Consensus 432 li~~~-~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~----~y~~l~~~~~~ 504 (645)
..... ...|+.+.|.++|+.+ ..+.+...|...+.-+...|+.+.|..+|++++...|.++. .|...+..-..
T Consensus 174 ~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~ 253 (308)
T d2onda1 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 44443 3458999999999987 23346789999999999999999999999999997775543 67777887788
Q ss_pred cCCchHHHHHHHHHHhC
Q 048812 505 AGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 505 ~g~~~~a~~~~~~m~~~ 521 (645)
.|+.+.+.++.+++.+.
T Consensus 254 ~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 254 IGDLASILKVEKRRFTA 270 (308)
T ss_dssp HSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=6.7e-08 Score=90.91 Aligned_cols=197 Identities=13% Similarity=0.009 Sum_probs=138.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
...+|..+...|.+.|++++|++.|++..+-+
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~------------------------------------------------ 67 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR------------------------------------------------ 67 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC------------------------------------------------
Confidence 34577788899999999999999998875332
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
+.+..+|+.+..+|.+.|++++|+..|++..+. .|+ ..++..+..++...|+.++|.+.|+...+
T Consensus 68 ------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 68 ------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp ------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 246778999999999999999999999999985 444 67888888999999999999999999885
Q ss_pred hcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCc
Q 048812 419 VYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 419 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
. .|+ ......+...+.+.+..+.+..+.... ...++...+.. +..+.. .+..+.+...+.......|...
T Consensus 134 ~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (259)
T d1xnfa_ 134 D---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLS 209 (259)
T ss_dssp H---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred h---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccH
Confidence 3 453 444444455556666655555444433 11122222222 222211 1223444444444444556666
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 493 GAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 493 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.+|..|+.+|...|++++|.+.+++.....
T Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 210 ETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 788899999999999999999999987643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.64 E-value=1.8e-08 Score=99.26 Aligned_cols=247 Identities=10% Similarity=-0.064 Sum_probs=168.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHH----------HHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcC
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDM----------YFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSN 275 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----------y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g 275 (645)
+..++|.+++..+++.. |.+...|+..-.. +...|.+++|...|+......| +...|..+..++...+
T Consensus 43 ~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence 34478888888888765 3334444432222 2233446677777776333333 6667777777666655
Q ss_pred C--HHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcC
Q 048812 276 E--RDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353 (645)
Q Consensus 276 ~--~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~ 353 (645)
+ +++|+..+.++.+.+ .+
T Consensus 122 ~~~~~~a~~~~~~al~~~------------------------------------------------------------~~ 141 (334)
T d1dcea1 122 EPNWARELELCARFLEAD------------------------------------------------------------ER 141 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC------------------------------------------------------------TT
T ss_pred cccHHHHHHHHHHHHhhC------------------------------------------------------------ch
Confidence 4 667777776655333 23
Q ss_pred ChhHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 354 NVYLWTS-VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
+...|.. ....+...|.+++|+..+++...... -+...|..+..++...|++++|...+....+ +.|. ...+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~ 214 (334)
T d1dcea1 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN---VLLK---ELEL 214 (334)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH---HHHH---HHHH
T ss_pred hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH---hHHH---HHHH
Confidence 4555543 34566778999999999998887532 2577888888888888888777665544432 1221 1223
Q ss_pred HHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 433 VDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
...+...+..+++...+... ..+++...+..+...+...++.++|...+.+..+.+|.+..++..++.+|.+.|++++
T Consensus 215 ~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~e 294 (334)
T d1dcea1 215 VQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 294 (334)
T ss_dssp HHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHH
Confidence 34455667777777766654 2334555667777788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 048812 511 MSRIRMKLRDM 521 (645)
Q Consensus 511 a~~~~~~m~~~ 521 (645)
|.+.+++..+.
T Consensus 295 A~~~~~~ai~l 305 (334)
T d1dcea1 295 TLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=1.9e-06 Score=82.29 Aligned_cols=163 Identities=10% Similarity=0.046 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCC----
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTK-PDQVTFIALLSACS-HGGLVDEGYDFLSKKSRVYNIKPK---- 425 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~---- 425 (645)
.+|+.+...|.+.|++++|++.+++..+. |.. ....++..+...|. ..|++++|.+.+++..+......+
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 56778888899999999999998876542 111 11345666666664 469999999999887642221221
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch---
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-------DV-SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG--- 493 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------d~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~--- 493 (645)
..++..+...|...|++++|.+.+++. ...| .. ..+...+-.+...|+.+.|...+++..+.+|..+.
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre 237 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH
Confidence 456788899999999999999999885 1111 11 12344455567789999999999999998875433
Q ss_pred --hHHHHHHHHHH--cCCchHHHHHHHHH
Q 048812 494 --AHVLLANIYAK--AGRLDDMSRIRMKL 518 (645)
Q Consensus 494 --~y~~l~~~~~~--~g~~~~a~~~~~~m 518 (645)
....|+.+|.. .+++++|...++.+
T Consensus 238 ~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23455666654 34577777777543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=8.8e-07 Score=79.38 Aligned_cols=100 Identities=9% Similarity=-0.090 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 048812 388 PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSL 464 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~l 464 (645)
|+...+......+...|++++|+..|.+..+ +.| +...|..+..+|.+.|++++|.+.+++. .+.| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 4444444555555555555555555555443 223 2344444444455555555555444443 3333 23344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
..++...|++++|...|+++++++|+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 44455555555555555554444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.2e-06 Score=69.28 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=66.4
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 44566777777777777765 2233 566777777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 048812 511 MSRIRMKLRDM 521 (645)
Q Consensus 511 a~~~~~~m~~~ 521 (645)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888777653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=3.3e-05 Score=73.36 Aligned_cols=131 Identities=15% Similarity=0.012 Sum_probs=63.8
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hH
Q 048812 359 TSVIAAYAM-AGHAQKAIDLFLEMEE----TGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-----MQ 427 (645)
Q Consensus 359 ~~li~~~~~-~g~~~~A~~l~~~m~~----~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~ 427 (645)
..+...|.. .|++++|++.|++..+ .+..+. ..++..+...+...|++++|.++|+++.....-.+. ..
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 334444433 4666666666655432 111111 234555556666666666666666665532211111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhc--CChHHHHHHHHHHHhcCC
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPPD------VSIWSSLLRACRCH--QNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd------~~~~~~ll~a~~~~--g~~~~a~~~~~~~~~~~p 489 (645)
.+..++..+...|+++.|.+.+++. .+.|+ ......|+.++... +.+++|...|+++.+++|
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 2334444555667777777776665 22221 22345555555442 235666666655555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=4.9e-06 Score=67.10 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=79.1
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQN 473 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~ 473 (645)
...+...|++++|...|++..+ +.| +...|..+..+|...|++++|.+.+++. .+ +.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 3456667777777777777764 344 3666777777777788888888777765 22 3467789999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
+++|+..++++++++|+++..+..+.++-+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999887777766543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.26 E-value=1.7e-06 Score=77.45 Aligned_cols=96 Identities=3% Similarity=-0.128 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 431 (645)
|+..........|.+.|++++|+..|.+.++.. +-+...|..+..+|...|++++|...|+...+ +.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 344455566677777788888888887777652 23466677777777777888888877777763 5664 667777
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 048812 432 MVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m 452 (645)
+..+|.+.|++++|...|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 777777888888877777764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=9.9e-06 Score=69.36 Aligned_cols=88 Identities=13% Similarity=0.004 Sum_probs=70.4
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
...|.+.|++++|...|++. ...| +...|..+...|...|++++|...|+++++++|.+..+|..++.+|...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 44567888888888888776 3334 567788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 048812 511 MSRIRMKLRD 520 (645)
Q Consensus 511 a~~~~~~m~~ 520 (645)
|...+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.22 E-value=2.1e-06 Score=68.78 Aligned_cols=88 Identities=18% Similarity=0.077 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
.+...+.+.|++++|...+++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3566788899999999999886 4445 5789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 048812 509 DDMSRIRMKL 518 (645)
Q Consensus 509 ~~a~~~~~~m 518 (645)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998874
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=4.2e-05 Score=67.53 Aligned_cols=123 Identities=10% Similarity=-0.039 Sum_probs=86.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcC
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAG 440 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 440 (645)
...+...|++++|++.|.++ ..|+..++..+..++...|++++|.+.|++..+ +.|+ ...|..+..+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhc
Confidence 44556677777777777653 345666677777777777777777777777774 4453 566777777777777
Q ss_pred CHHHHHHHHHhC----C-------------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 441 HLEESANFITSM----P-------------IPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 441 ~~~~A~~~~~~m----~-------------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
++++|.+.|++. + .+++ ..++..+..++...|++++|.+.+++++++.|..
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 777777666653 1 1111 2456677778899999999999999999988864
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.3e-05 Score=68.56 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=80.6
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 048812 398 SACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNV 474 (645)
Q Consensus 398 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~ 474 (645)
..|.+.|++++|...|++..+ +.| +...|..+...|...|++++|.+.|++. ...| +..+|..+..++...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 345566666677766666664 344 3566666777777777777777777665 3334 567888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHH--HHcCCchHHHHH
Q 048812 475 KLAEHAFKHLTETDPLNDGAHVLLANIY--AKAGRLDDMSRI 514 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~--~~~g~~~~a~~~ 514 (645)
++|...+++++.++|+++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988877766553 334445555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=2.1e-05 Score=69.61 Aligned_cols=140 Identities=10% Similarity=0.064 Sum_probs=109.4
Q ss_pred CcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 338 DNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 338 ~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
++++.|.+.|..+.+++..+|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.+.|++..
T Consensus 19 ~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl 97 (192)
T d1hh8a_ 19 KDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 97 (192)
T ss_dssp TCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999853 2347889999999999999999999999887
Q ss_pred Hhc-----------CCC--CC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048812 418 RVY-----------NIK--PK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFK 482 (645)
Q Consensus 418 ~~~-----------~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 482 (645)
... |+. ++ ..++..+..++.+.|++++|.+.++.. ...|+. .++.++.|+..+.
T Consensus 98 ~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-----------~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSKIDKAMECVW 166 (192)
T ss_dssp HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------GGGHHHHHHHHHH
T ss_pred HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------chHHHHHHHHHHH
Confidence 421 111 11 356677888999999999999998876 555553 3344556665555
Q ss_pred HHHhcCC
Q 048812 483 HLTETDP 489 (645)
Q Consensus 483 ~~~~~~p 489 (645)
+....+|
T Consensus 167 ~~~~~~~ 173 (192)
T d1hh8a_ 167 KQKLYEP 173 (192)
T ss_dssp TTCCCCC
T ss_pred hhhhCCc
Confidence 5444444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.8e-05 Score=67.19 Aligned_cols=61 Identities=11% Similarity=-0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+|+.+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566677778888888888888888888888888888888888888888888888887765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=2.5e-05 Score=67.60 Aligned_cols=135 Identities=11% Similarity=0.010 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...+......+.+.|++++|+..|.+.+..- |.. .+..+.-......+ ....|+.+..
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~ 70 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAM 70 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHH
Confidence 3455666778888899999999998877531 110 00000000011111 1235677888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHH
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a 511 (645)
.|.+.|++++|+..+++. .+.| ++.+|..+..++...|++++|...|+++++++|+++.+...+..+..+.+...+.
T Consensus 71 ~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 71 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988876 4445 7889999999999999999999999999999999999998888887766655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=8.2e-06 Score=66.12 Aligned_cols=104 Identities=13% Similarity=-0.034 Sum_probs=73.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHL---EESANFITSM-PIPPDV---SIWSSLLR 466 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~pd~---~~~~~ll~ 466 (645)
.+++.+...+++++|.+.|+.... +.| +..++..+..++.+.++. ++|.++++++ ...|+. .+|..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 456666667777777777777664 344 456666666666654443 4577777765 333433 36778889
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
+|...|++++|++.|+++++++|++..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999997665554433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.03 E-value=5.7e-05 Score=63.88 Aligned_cols=83 Identities=17% Similarity=0.055 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEE
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFV 538 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~ 538 (645)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 467778888999999999999999999999999999999999999999999999999888663
Q ss_pred EEEEeCCCCCcChHHHHHHHHHHHHHHHH
Q 048812 539 HKFTSGDIFNPHSEEIYLMLNEIEMTLQQ 567 (645)
Q Consensus 539 ~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 567 (645)
.|...++...+..+..++++
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHH
Confidence 35556666666666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.3e-05 Score=64.82 Aligned_cols=91 Identities=9% Similarity=-0.045 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCc--hhHHHHHHHH
Q 048812 430 GCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQ---NVKLAEHAFKHLTETDPLND--GAHVLLANIY 502 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~~~--~~y~~l~~~~ 502 (645)
..+++.+...+++++|++.|++. ... .++.++..+..++.+.+ +.++|+.+++++++.+|.+. .++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46778888999999999999987 333 46788888888887654 45679999999999887653 4788999999
Q ss_pred HHcCCchHHHHHHHHHHh
Q 048812 503 AKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~ 520 (645)
.+.|++++|.+.++++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 999999999999999976
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=0.0057 Score=58.06 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=63.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
+..+|..+...+.+.....-| .+...+...+......++..+-..|.+++...+++...... ..+..+++-++.
T Consensus 68 ~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~ 141 (336)
T d1b89a_ 68 STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 141 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHH
Confidence 455666667666666554332 22223333455555667777777777777766666654322 455666777777
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.|++.+. ++-.+.+.. .. +.....-++..|-+.+.+.++.-++.++.
T Consensus 142 lyak~~~-~kl~e~l~~--~s--~~y~~~k~~~~c~~~~l~~elv~Ly~~~~ 188 (336)
T d1b89a_ 142 LYSKFKP-QKMREHLEL--FW--SRVNIPKVLRAAEQAHLWAELVFLYDKYE 188 (336)
T ss_dssp HHHTTCH-HHHHHHHHH--HS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHhCh-HHHHHHHHh--cc--ccCCHHHHHHHHHHcCChHHHHHHHHhcC
Confidence 7777643 333333332 11 11222334444445555555554444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.87 E-value=0.00021 Score=61.32 Aligned_cols=61 Identities=8% Similarity=-0.050 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666778888888888888888888888888888888888888888888888888765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=7.4e-05 Score=64.36 Aligned_cols=64 Identities=16% Similarity=-0.032 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456777778888889999999999999999998888899999999999999999988888866
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.84 E-value=0.00017 Score=61.94 Aligned_cols=143 Identities=10% Similarity=-0.006 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...+......+.+.|++++|+..|.+.... .|. +. ....+. ......+ ....|..+..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~~-~~~~~~-~~~~~~~--------~~~~~~Nla~ 72 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------EY-GLSEKE-SKASESF--------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------CC-SCCHHH-HHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------hh-ccchhh-hhhcchh--------HHHHHHhHHH
Confidence 455666777788888888888888775532 000 00 000000 0001111 1235666778
Q ss_pred HHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH-H
Q 048812 435 LLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD-M 511 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~-a 511 (645)
+|.+.|++++|+..+++. .. +.+..+|..+..++...|++++|...|+++++++|+++.+...+..+....+...+ .
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 889999999999998876 33 34678899999999999999999999999999999999888888888776665543 4
Q ss_pred HHHHHHHH
Q 048812 512 SRIRMKLR 519 (645)
Q Consensus 512 ~~~~~~m~ 519 (645)
.+++..|-
T Consensus 153 kk~~~~~f 160 (168)
T d1kt1a1 153 RRTYANMF 160 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.00011 Score=63.21 Aligned_cols=129 Identities=9% Similarity=0.047 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLL 436 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 436 (645)
+......+...|++++|+..|.+.++. +..........+ ...+.| ....|..+...|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~----------~~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDAD----------GAKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHH----------HGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHH----------HHHhChhhHHHHHHHHHHH
Confidence 345566778899999999999887642 000000000000 011233 356777888999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 437 GRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
.+.|++++|+..+++. .+.| ++..|..+..++...|++++|+..|+++++++|+++.++..|..++.+....
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 5555 6779999999999999999999999999999999988888887776554433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.81 E-value=0.0023 Score=58.93 Aligned_cols=149 Identities=10% Similarity=0.011 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCC
Q 048812 368 AGHAQKAIDLFLEMEETGTKPDQVTFIALLSA--CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR----AGH 441 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~ 441 (645)
..+.+.|...+++....|..+....+ ..... .........+...+..... ..+...+..|...|.. ..+
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~ 161 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKD 161 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCC
T ss_pred chhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccc
Confidence 34556677777666665432221111 11111 1223455566666655442 3445566666666664 345
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCchHHHH
Q 048812 442 LEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK----AGRLDDMSR 513 (645)
Q Consensus 442 ~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~ 513 (645)
...+..+++...-..+......|...+.. .+|.+.|...|++..+.+ ++..+..|+.+|.. ..+.++|.+
T Consensus 162 ~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~ 239 (265)
T d1ouva_ 162 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIE 239 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred cccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence 66666666655323456666556555554 568999999999998875 45778889998876 347889999
Q ss_pred HHHHHHhCCC
Q 048812 514 IRMKLRDMGL 523 (645)
Q Consensus 514 ~~~~m~~~~~ 523 (645)
.+++..+.|-
T Consensus 240 ~~~kAa~~g~ 249 (265)
T d1ouva_ 240 NFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHCcC
Confidence 9999887773
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=5.5e-05 Score=61.78 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG-------AHVLLA 499 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-------~y~~l~ 499 (645)
+..+.+.|.+.|++++|.+.|++. ...| +..+|..+..+|...|++++|+..++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667788888999998888776 3334 6788999999999999999999999999999887765 555677
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 048812 500 NIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788888999999999977643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.66 E-value=0.00043 Score=58.22 Aligned_cols=127 Identities=10% Similarity=-0.036 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...+......+.+.|++.+|+..|.+....- |.. ....-..... ... .....+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~---~~~-----~~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLD---KKK-----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHH---HHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHH---hhh-----hHHHHHHhhHHH
Confidence 4567778888999999999999999887631 110 0000000000 000 112356777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
.|.+.|++++|++.+++. ...| +..+|..+..++...|++++|...|+++++++|+++.+...+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999886 4445 6789999999999999999999999999999999987776665544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00017 Score=62.56 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=78.0
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 048812 398 SACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLA 477 (645)
Q Consensus 398 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a 477 (645)
......|++++|.+.|.....-+.-.+-... ....-......-++. -....+..+..++...|++++|
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchHH
Confidence 4567788888888888887743221110000 000000000011111 1235678889999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 478 EHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 478 ~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...++++++.+|.+...|..|+.+|.+.|++++|.+.|+++++
T Consensus 87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998744
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.53 E-value=0.00021 Score=56.50 Aligned_cols=90 Identities=9% Similarity=-0.151 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYF 239 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 239 (645)
+-.+...+.+.|++++|+..|++.+.. .| +...|..+..++...+++++|...+..+++.. +.+..++..|...|.
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 334556677788888888888887765 34 45577777777778888888888888777765 556677777777777
Q ss_pred HcCCHHHHHHHHcc
Q 048812 240 KCGKIGEAQKLLGR 253 (645)
Q Consensus 240 ~~g~~~~A~~~~~~ 253 (645)
..|+.++|.+.|++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888777765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.047 Score=51.48 Aligned_cols=274 Identities=13% Similarity=0.156 Sum_probs=159.0
Q ss_pred ccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 048812 139 KCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLF 218 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (645)
+.|.++.|..+|..+. -|.-++..|.+.+++..|.+++.+.. +..+|..+..+|.+......+ .
T Consensus 26 ~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la-----~ 89 (336)
T d1b89a_ 26 DEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA-----Q 89 (336)
T ss_dssp ---CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH-----H
T ss_pred HCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH-----H
Confidence 3344555555554433 36677788888999999998887552 567888888888877666543 2
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHH
Q 048812 219 LEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEI-DEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297 (645)
Q Consensus 219 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ 297 (645)
+.......++.....++..|-..|..++...+++.... ...+...++-++..|++.+. ++-++.+... .+..
T Consensus 90 i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~--s~~y---- 162 (336)
T d1b89a_ 90 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELF--WSRV---- 162 (336)
T ss_dssp HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHH--STTS----
T ss_pred HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHHHhc--cccC----
Confidence 22333345555667899999999999999999986322 34577788899999988753 3444443332 1212
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
++..+.++.++ ...|.-++-.|.+.|++++|+.+
T Consensus 163 -----------------------------------------~~~k~~~~c~~-----~~l~~elv~Ly~~~~~~~~A~~~ 196 (336)
T d1b89a_ 163 -----------------------------------------NIPKVLRAAEQ-----AHLWAELVFLYDKYEEYDNAIIT 196 (336)
T ss_dssp -----------------------------------------CHHHHHHHHHT-----TTCHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------------------------CHHHHHHHHHH-----cCChHHHHHHHHhcCCHHHHHHH
Confidence 22333333322 22367788888888888888776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 048812 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPD 457 (645)
Q Consensus 378 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd 457 (645)
. .+. .|+..-....+..+.+..+.+...++.....+. .|+ ..+.|+......-+..+..+.
T Consensus 197 ~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p~--~i~~lL~~v~~~~d~~r~V~~--------- 257 (336)
T d1b89a_ 197 M---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNY--------- 257 (336)
T ss_dssp H---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHH---------
T ss_pred H---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CHH--HHHHHHHHhccCCCHHHHHHH---------
Confidence 4 221 233222233344445555555444444433321 232 223333333333334443333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHH
Q 048812 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512 (645)
Q Consensus 458 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~ 512 (645)
+.+.+++......++...+.+ +...+..|..+|...++++.-+
T Consensus 258 ----------~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 258 ----------FSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp ----------HHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------HHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHhCcchhHHHH
Confidence 344555666666666654432 3467778888888888755433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.35 E-value=0.0003 Score=58.59 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=75.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG----------GLVDEGYDFLSKKSRVYNIKPK-MQHYGCMV 433 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 433 (645)
|-+.+.+++|+..|+...+.. +.|..++..+..+|... +.+++|++.|++..+ +.|+ ...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 455667788888888877742 22455666666666533 334556666666553 3443 45555555
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
.+|...|++. ++... ..++++.|.+.|+++++++|+++..+..|... ..|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 5554443221 11111 11246889999999999999986655555444 34667
Q ss_pred HHHHHHhCCC
Q 048812 514 IRMKLRDMGL 523 (645)
Q Consensus 514 ~~~~m~~~~~ 523 (645)
++.+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777766664
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.32 E-value=0.035 Score=50.50 Aligned_cols=64 Identities=6% Similarity=-0.091 Sum_probs=40.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhC
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK----LRDLEMGKNLHLFLEEST 223 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g 223 (645)
|+..|..|...+.+.+++++|++.|++..+.| |...+..|-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence 34566677777777888888888888887765 44444444444433 446666666666665554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.0005 Score=70.39 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHH
Q 048812 371 AQKAIDLFLEMEETGTKPDQVTFIALLSAC--SHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESAN 447 (645)
Q Consensus 371 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 447 (645)
+..+++.+++..+....|+..-....+..+ ...+.++.+...+.. .+++.|+ ...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~---~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCT---VFNVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 445666676666544344433222222111 122334444433332 3345553 5667777778888888888876
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 448 FITSMPIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 448 ~~~~m~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.++..- .++ ..++..|...+...|++++|+..+++++++.|++..+|..|+.+|...|+..+|...+.+....
T Consensus 142 ~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 142 PQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp -CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 655431 112 2467778888888899999999999999999998889999999999999999888888777553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.00064 Score=58.73 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcC--chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048812 108 NSIIENQLINGYPQEVFAIYLYLVTRT--VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMG 185 (645)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~ 185 (645)
..........|++++|.+.|.+.+... ..+.....-+-+...-..+....+..+..+...+.+.|++++|+..++++.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al 94 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 94 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 334456677788888888888777642 222222221112111112222345678889999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH-----hCCCCchhH
Q 048812 186 AEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEE-----STMKISGSL 230 (645)
Q Consensus 186 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 230 (645)
... +-+...|..++.++...|+..+|.+.|..+.+ .|+.|...+
T Consensus 95 ~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 95 FEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 863 33677899999999999999999999988744 588887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.0016 Score=52.61 Aligned_cols=93 Identities=8% Similarity=0.023 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-----MQHYGCM 432 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 432 (645)
+-.+...|.+.|++++|+..|.+.++.. +.+...+..+..+|...|++++|.+.++.+.+...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456677888888888888888888753 235777788888888888888888888887742111111 1344455
Q ss_pred HHHHHHcCCHHHHHHHHHh
Q 048812 433 VDLLGRAGHLEESANFITS 451 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~ 451 (645)
.+.+...+++++|.+.+++
T Consensus 86 g~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5555555555555555544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.001 Score=50.50 Aligned_cols=72 Identities=18% Similarity=0.045 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM----P----IPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m----~----~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
+-.+...+.+.|++++|.+.|++. + ..++ ..++..|..++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345566667777777777666554 1 1223 467889999999999999999999999999999988777664
Q ss_pred H
Q 048812 500 N 500 (645)
Q Consensus 500 ~ 500 (645)
.
T Consensus 88 ~ 88 (95)
T d1tjca_ 88 Y 88 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.18 E-value=0.00082 Score=56.59 Aligned_cols=86 Identities=16% Similarity=-0.036 Sum_probs=61.4
Q ss_pred HHHHcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------C--
Q 048812 435 LLGRAGHLEESANFITSM----PIPPD----------VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL-------N-- 491 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m----~~~pd----------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~-------~-- 491 (645)
.+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++.+++.|. .
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344555666655555543 11121 356788888889999999999999988875331 1
Q ss_pred --chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 492 --DGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 492 --~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+|..++.+|...|++++|...+++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23577889999999999999999998765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=8.3e-05 Score=76.44 Aligned_cols=152 Identities=11% Similarity=-0.015 Sum_probs=78.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 431 (645)
++...|+.+...+.+.|+.++|...+.+.... .| ..++..+...+...|++++|..+|++..+ +.|+ ...|+.
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~---l~P~~~~~~~~ 191 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQ---LVPSNGQPYNQ 191 (497)
T ss_dssp -------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTBSHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCchHHHHH
Confidence 45566777788888888888888877765542 11 35666777788888888888888888774 4665 578888
Q ss_pred HHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHcC
Q 048812 432 MVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN---DGAHVLLANIYAKAG 506 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~y~~l~~~~~~~g 506 (645)
|..++...|+..+|...|.+. -.+|-..++..|...+.+..+...+. ...+.. ...++.+...+....
T Consensus 192 Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~ 264 (497)
T d1ya0a1 192 LAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSK 264 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCC
Confidence 888888888888888887765 23456777777777665433221100 000111 123445555566666
Q ss_pred CchHHHHHHHH
Q 048812 507 RLDDMSRIRMK 517 (645)
Q Consensus 507 ~~~~a~~~~~~ 517 (645)
.+++..++.++
T Consensus 265 ~~~~~~~~~~~ 275 (497)
T d1ya0a1 265 SLEKLSPLREK 275 (497)
T ss_dssp CGGGHHHHHHH
T ss_pred chhhHHHHHHH
Confidence 66665555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.05 E-value=0.0009 Score=61.74 Aligned_cols=124 Identities=11% Similarity=0.074 Sum_probs=78.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 445 (645)
+.|++++|+..+++.++. -+-|...+..+...++..|++++|.+.++...+ +.|+ ...+..+..++...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHHH
Confidence 468888888888888775 233467777888888888888888888888774 4565 34444455555444444444
Q ss_pred HHHHHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 446 ANFITSM--PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 446 ~~~~~~m--~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
..-.... ..+|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 3322221 12232 2333444555677788888888888888877766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.92 E-value=0.00045 Score=57.46 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC-----------chHHHHHHHHHHh
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR-----------LDDMSRIRMKLRD 520 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 520 (645)
+.+++|+..|+++++++|+++.+|..++.+|...|+ +++|.+.+++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 456889999999999999999999999999988764 5778888877765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.84 E-value=0.0044 Score=51.83 Aligned_cols=107 Identities=18% Similarity=0.040 Sum_probs=61.4
Q ss_pred hHHHHH--HHHHHHcCCHHHHHHHHHHHHHcC-CCCC----------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 048812 356 YLWTSV--IAAYAMAGHAQKAIDLFLEMEETG-TKPD----------QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI 422 (645)
Q Consensus 356 ~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g-~~pd----------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 422 (645)
.+|..+ ...+.+.|++++|+..|++.++.. -.|+ ...|+.+..++...|++++|.+.+++..+-
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~--- 84 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 84 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc---
Confidence 455555 334445677777777777766421 1121 234445555555555555555554444321
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 423 KPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 423 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..+. ...++ ...+..+..+|...|++++|...|++++++.|..
T Consensus 85 --------------------------~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 85 --------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp --------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred --------------------------ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 1110 11121 2256777888999999999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0055 Score=46.20 Aligned_cols=62 Identities=13% Similarity=-0.010 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETDPLN-------DGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+--+...+.+.|+++.|...|++++++.|.+ ..++..|+.+|.+.|++++|...+++..+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34467788999999999999999999865433 357889999999999999999999998763
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.23 E-value=0.059 Score=41.49 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=99.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 048812 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 445 (645)
.-.|..++..++..+.... .+..-|+.+|.-....-+-+...+.++.+-+-+.+.| ++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHHH
Confidence 3467778888888877764 3566777777766777777777777777766555544 2333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 446 ANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 446 ~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
...+-.+. .+......-++...++|.-+.-.++++.+++.+..+|.....+.++|-+.|...++.+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33333332 234455666777888899999999999988876667788888999999999999999999999888874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.94 E-value=0.014 Score=53.47 Aligned_cols=119 Identities=12% Similarity=-0.034 Sum_probs=81.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEA 247 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 247 (645)
..+.|++++|+..|++.++.. +-|...+..+...++..|++++|.+.++...+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 346789999999999988873 3356788888899999999999999999888875 33445555555555544444444
Q ss_pred HHHHcccCC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 248 QKLLGRYEI-DEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 248 ~~~~~~m~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
..-...... .+| +...+......+...|+.++|.+++++..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~ 126 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333222111 122 33444555667888999999999998875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=4.5 Score=39.07 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHH-HH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 048812 369 GHAQKAIDLFLEMEETG-TKPDQVT-FI-ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g-~~pd~~t-~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 445 (645)
.+.+.|..++....... ..++... .. .+.......+..+.+..++..... ...+.......+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc---cccchHHHHHHHHHHHHcCChHHH
Confidence 45666666666655432 2222111 11 111222334555556665554442 122333334444455566777777
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 446 ANFITSMPIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 446 ~~~~~~m~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
...++.|+..|. ..-.-=+..++...|+.+.|...|..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 777777753331 11112234556677777777777776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.45 Score=36.79 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
|-.|.-+|.+.|++++|.+.++++++++|++
T Consensus 76 lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 76 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 3334444445555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.00 E-value=1.2 Score=34.81 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK----AGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 523 (645)
.|.++|.+.|++..+.+ ++.....|..+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 35666666666666643 23455566666655 3456667777777666653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=90.83 E-value=0.91 Score=35.58 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR----AGHLEE 444 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 444 (645)
.++++|+.+|++..+.|.. . ....+ +.....+.++|.+++++..+ .| ++..+..|..+|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~~-~--a~~~l--~~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM-F--GCLSL--VSNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT-T--HHHHH--HTCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCCh-h--hhhhh--ccccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHH
Confidence 4688999999999988733 2 22223 23456789999999998884 33 45556666666655 457899
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC
Q 048812 445 SANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 445 A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~ 490 (645)
|.++|++.--.-++.....|...|.. ..|.++|.+++++..+.+..
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 99999987323355556666666654 46899999999999887653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.86 E-value=3.2 Score=31.66 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=85.4
Q ss_pred cHHHHHHHHhhcCc-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 339 NIELAYDLFSEISE-KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 339 ~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
.+++..++...... .+..-||=+|.-....-+-+-.++.++..-. -.| .+..+++......+-.
T Consensus 17 ~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv~C~~~-- 81 (161)
T d1wy6a1 17 YIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVECGVI-- 81 (161)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHHHHH--
T ss_pred hHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHHHHHHH--
Confidence 45666666554433 3444555566555555555555555444322 112 1122333333333322
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
...+.++...-++.+..+|+-+.-.++.+.+ .-+|++...-.+.+||.+.|+..++-+++.++.+.+-
T Consensus 82 ----~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 82 ----NNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp ----TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ----hcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 2345667778889999999999999998874 4568899999999999999999999999999988664
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.57 E-value=4.1 Score=31.12 Aligned_cols=67 Identities=4% Similarity=-0.039 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhcc---CcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 048812 388 PDQVTFIALLSACSHG---GLVDEGYDFLSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD 457 (645)
Q Consensus 388 pd~~t~~~ll~a~~~~---g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd 457 (645)
|...|--....++.++ .++++|+.+++++.+. .|. ...+-.|.-+|.+.|++++|.+.++.+ .+.|+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3333433344444433 3445566666665532 232 234444555566666666666666654 44444
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