Citrus Sinensis ID: 048817

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---
MKIEFNMGGNLWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQQRMRKRVLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATFSSNSSLATVKPMAVALPVTSEKKDENGLFPNLGILDRVEGVPKIFGQELNNSGHVHTPFSREKLAVRKMEERPSWEAYTNGNRTAFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHYQSQKPMQMQIDFSGATSRPNVIARPLNADSEHSDVEASCRDERTGTVEERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSIQPLSSVG
cccccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccccccEEEccccEEEEcccccccccHHHHHHHHccccccEEEEEEccccEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEEcccccccHHHHHHHHHHHHcccccccccc
ccEEEccccccccHcHHHHHHHHHcccHHHHccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEEEEcccccccEEEEEcccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHccccEEEEHHHEHEccccccccccHHHccccEEEEcccccccccHHHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEEcccccccHHHHHHHHHHHHcccccccccc
mkiefnmggnlwndedKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLsdlvdrpnasnfswnYAIFWQIsrsksgdwvlgwgdgscrepkegeeseatripnirledETQQRMRKRVLQKLHTlfggsdednyalgldrvtDTEMFFLASMYfsfprgeggpgkcfasgkhVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVvelgsvrsvpesLELVHSIRAtfssnsslatvkpmavalpvtsekkdenglfpnlgildrvegvpkifgqelnnsghvhtpfsrEKLAVRKmeerpsweaytngnrtafpgirngvhgfswgnvqGVKQGIATEIFGSQTNNLQELVNgvredfrinhyqsqkpmqmqidfsgatsrpnviarplnadsehsdveascrdertgtveerrprkrgrkpangreeplnhVEAERQRREKLNQRFYALRAvvpniskmdkaSLLGDAIAYINELQAKLKVMEAEREnlsgnsrdlsafesnpnvesqnrapdvdiqaAHDEVVVRvscpldshpaSRVIQAFKDAQITVVESKLSTGNDMVFHTFVIksqgseqlTKEKLIAAFscesssiqplssvg
MKIEFNMGGNLWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGScrepkegeeseatripnirledetqqRMRKRVLQKLhtlfggsdednyALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRAtfssnsslatvKPMAVALPVtsekkdenglfpnlgILDRVEGVPKIFGQelnnsghvhtpfsrekLAVRKMEERPSWEAYTNGNRTAFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHYQSQKPMQMQIDFSGATSRPNVIARplnadsehsdveascrdertgtveerrprkrgrkpangreeplnhveaerqRREKLNQRFYALravvpniskmDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAfscesssiqplssvg
MKIEFNMGGNLWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQQRMRKRVLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATFSSNSSLATVKPMAVALPVTSEKKDENGLFPNLGILDRVEGVPKIFGQELNNSGHVHTPFSREKLAVRKMEERPSWEAYTNGNRTAFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHYQSQKPMQMQIDFSGATSRPNVIARPLNADSEHSDVEASCRDERTGTVEErrprkrgrkpangrEEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSIQPLSSVG
********GNLWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVG**********DLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDG********************************VLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATF******ATVKPMAVAL*********NGLFPNLGILDRVEGVPKIFGQELNN**HV*******************WEAYTNGNRTAFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHY*********************************************************************************QRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLK*************************************AAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKS**********LIAAF**************
********GNLWNDEDKAMGAAVLGTRAFDYL************************SDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREP**********************************************GLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATFSSNSSLAT*****************NGLFPNLGILDRVEGVP**************************************************************************************************************************************************************************REKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQ*************************************VDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGS**LTKEKLIAAFSCE****QPL****
MKIEFNMGGNLWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSC***********TRIPNIRLEDETQQRMRKRVLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATFSSNSSLATVKPMAVALPVTSEKKDENGLFPNLGILDRVEGVPKIFGQELNNSGHVHTPFSREKLAVRKMEERPSWEAYTNGNRTAFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHYQSQKPMQMQIDFSGATSRPNVIARPLNA**************************************LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCE***********
*KIEFNMGGNLWNDEDKAMGAAVLGTRAFDYLLTSS************DEDLQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQQRMRKRVLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATFSSNS*******************************************************************************************************************************************************************************************************N****ERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVMEAEREN**********************APDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS*********
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MKIEFNMGGNLWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQQRMRKRVLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATFSSNSSLATVKPMAVALPVTSEKKDENGLFPNLGILDRVEGVPKIFGQELNNSGHVHTPFSREKLAVRKMEERPSWEAYTNGNRTAFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHYQSQKPMQMQIDFSGATSRPNVIARPLNADSEHSDVEASCRDERTGTVEERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLxxxxxxxxxxxxxxxxxxxxxxxxxxxxSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSIQPLSSVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query613 2.2.26 [Sep-21-2011]
Q9LNJ5590 Transcription factor bHLH yes no 0.911 0.947 0.549 1e-174
Q9ZPY8566 Transcription factor ABA- no no 0.866 0.938 0.509 1e-154
O49687589 Transcription factor MYC4 no no 0.871 0.906 0.322 3e-66
O23487467 Transcription factor bHLH no no 0.280 0.368 0.537 4e-48
Q9FIP9592 Transcription factor ATR2 no no 0.327 0.339 0.463 2e-44
Q39204623 Transcription factor MYC2 no no 0.313 0.308 0.456 1e-40
Q9LUK7511 Transcription factor bHLH no no 0.243 0.291 0.417 3e-27
Q9FN69637 Transcription factor GLAB no no 0.334 0.321 0.309 6e-21
P13027612 Anthocyanin regulatory R- N/A no 0.275 0.276 0.351 1e-20
P13526610 Anthocyanin regulatory Lc N/A no 0.275 0.277 0.351 1e-20
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function desciption
 Score =  612 bits (1578), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/639 (54%), Positives = 432/639 (67%), Gaps = 80/639 (12%)

Query: 5   FNMGGNLWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLSDLVDRPN 64
            N+G  +WN++DKA+ A++LG RA DYLL++S+SN NLLM +GSDE+LQNKLSDLV+RPN
Sbjct: 1   MNIGRLVWNEDDKAIVASLLGKRALDYLLSNSVSNANLLMTLGSDENLQNKLSDLVERPN 60

Query: 65  ASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQQRMRK 124
           ASNFSWNYAIFWQISRSK+GD VL WGDG CREPKEGE+SE  RI ++  E+ET Q MRK
Sbjct: 61  ASNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRK 120

Query: 125 RVLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLL 184
           RVLQKLH LFGGS+E+N ALGLDRVTDTEMF L+SMYFSFPRGEGGPGKCFAS K VWL 
Sbjct: 121 RVLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGPGKCFASAKPVWLS 180

Query: 185 DALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATFSSNS 244
           D +   SDYCVRSFLAKSA IQT+VL+ TD GVVELGS   +PES + + SIR+ F+  S
Sbjct: 181 DVVNSGSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSTSCLPESEDSILSIRSLFT--S 238

Query: 245 SLATVKPMAVALPVT-SEKKDENGLFPNLGILDRVEGVPKIFGQELNNSGHVHTPFS--- 300
           SL  V+  AVALPVT +EK D+N                KIFG++L+NSG +        
Sbjct: 239 SLPPVR--AVALPVTVAEKIDDNRT--------------KIFGKDLHNSGFLQHHQHHQQ 282

Query: 301 --------------REKLAVRKMEERPS--WEAY-TNGNRTAF--PGIRNG-VHGFSWGN 340
                         REKL VRKM++R     +AY  NGNR  F  PG  N  +   +W  
Sbjct: 283 QQQQPPQQQQHRQFREKLTVRKMDDRAPKRLDAYPNNGNRFMFSNPGTNNNTLLSPTWVQ 342

Query: 341 VQGVKQGIATEIFGSQTNNLQELVNGVREDFRINHYQSQK---PMQMQIDFSGATSRPNV 397
            +   + I          N++E+ +     F      SQ+   P QMQIDFS A+SR   
Sbjct: 343 PENYTRPI----------NVKEVPSTDEFKFLPLQQSSQRLLPPAQMQIDFSAASSR--- 389

Query: 398 IARPLNADSEHSD--VEASCRDERTGTVEERRPRKRGRKPANGREEPLNHVEAERQRREK 455
            A   N+D E      +A   DE        RPRKRGR+PANGR E LNHVEAERQRREK
Sbjct: 390 -ASENNSDGEGGGEWADAVGADESGNN----RPRKRGRRPANGRAEALNHVEAERQRREK 444

Query: 456 LNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFES 515
           LNQRFYALR+VVPNISKMDKASLLGDA++YINEL AKLKVMEAERE L         + S
Sbjct: 445 LNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERERL--------GYSS 496

Query: 516 NPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDM 575
           NP +   +   D+++Q + ++V VR++CPL+SHPASR+  AF+++++ V+ S L    D 
Sbjct: 497 NPPISLDS---DINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDT 553

Query: 576 VFHTFVIKSQGSEQLTKEKLIAAFSCE-SSSIQPLSSVG 613
           V HTFV+K   SE+LTKEKLI+A S E ++S+Q  +S G
Sbjct: 554 VLHTFVVK---SEELTKEKLISALSREQTNSVQSRTSSG 589

Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1 Back     alignment and function description
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1 Back     alignment and function description
>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query613
255564675615 DNA binding protein, putative [Ricinus c 0.993 0.990 0.749 0.0
225470922608 PREDICTED: transcription factor bHLH13 [ 0.983 0.991 0.740 0.0
149347186608 Myc2 bHLH protein [Vitis vinifera] 0.983 0.991 0.738 0.0
449531709621 PREDICTED: LOW QUALITY PROTEIN: transcri 0.991 0.979 0.678 0.0
449432042621 PREDICTED: transcription factor bHLH13-l 0.991 0.979 0.677 0.0
356571248619 PREDICTED: transcription factor bHLH13-l 0.954 0.945 0.605 0.0
224067996549 predicted protein [Populus trichocarpa] 0.862 0.963 0.637 0.0
356520278626 PREDICTED: transcription factor bHLH13-l 0.975 0.955 0.624 0.0
356560147618 PREDICTED: transcription factor bHLH13-l 0.967 0.959 0.621 0.0
356504177550 PREDICTED: transcription factor bHLH13-l 0.869 0.969 0.590 0.0
>gi|255564675|ref|XP_002523332.1| DNA binding protein, putative [Ricinus communis] gi|223537420|gb|EEF39048.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/619 (74%), Positives = 529/619 (85%), Gaps = 10/619 (1%)

Query: 1   MKIEFNMGGN-LWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLSDL 59
           MKIE  MGG   WNDED+AM A VLGT+AF+YL+++S+SNE+LLMA+GSDE+LQNKLSDL
Sbjct: 1   MKIEIGMGGGGAWNDEDRAMVATVLGTKAFEYLVSNSVSNESLLMAIGSDENLQNKLSDL 60

Query: 60  VDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQ 119
           VDRPNASNFSWNYAIFWQIS SKSGDWVLGWGDGSCREP+EGEE EATRI N+RLEDETQ
Sbjct: 61  VDRPNASNFSWNYAIFWQISCSKSGDWVLGWGDGSCREPREGEEFEATRILNLRLEDETQ 120

Query: 120 QRMRKRVLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGK 179
           QRMRKRVLQ LHTL G SDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKC ASGK
Sbjct: 121 QRMRKRVLQNLHTLSGESDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGK 180

Query: 180 HVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRAT 239
           HVW+ DA K  SDYCVRSFLAKSA I+TIVL++TD GVVELGSVRS+PES E+V SIR+T
Sbjct: 181 HVWIPDAFKSGSDYCVRSFLAKSAGIKTIVLVATDVGVVELGSVRSLPESFEMVQSIRST 240

Query: 240 FSSNSS---LATVKPMAVALPVTSEKKDENGLFPNLGILDRVEGVPKIFGQELNNSGHVH 296
           FS+++S   L +V P A ALP  +EKK E  LF N+GI++RVEG+PKIFGQ+LNNS H H
Sbjct: 241 FSTHNSVKPLVSVAPPAPALPAVNEKKGEISLFSNVGIVERVEGIPKIFGQDLNNSAHGH 300

Query: 297 TPFSREKLAVRKMEERPSWEAYTNGNRTAFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQ 356
               REKLAVRKMEERP W+ Y NGNR +FPG RNG+HG SW +   +KQG   E++GSQ
Sbjct: 301 GHGFREKLAVRKMEERPPWDVYQNGNRLSFPGTRNGLHGSSWAHSFSLKQGTPAEVYGSQ 360

Query: 357 --TNNLQELVNGVREDFRINHYQSQKPMQMQIDFSGATSRPNVIARPLNADSEHSDVEAS 414
             TNNLQELVNGVRED+R+ +Y  QK +QMQIDFSG    P+VI RP+N +SEHSDVE  
Sbjct: 361 ATTNNLQELVNGVREDYRLKNYPPQKQVQMQIDFSG----PSVIGRPVNVESEHSDVEVP 416

Query: 415 CRDERTGTVEERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMD 474
            ++E  G  ++RRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMD
Sbjct: 417 SKEEGPGNSDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMD 476

Query: 475 KASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAH 534
           KASLLGDAIAYINELQAKLK MEAERE    +SRD S  E+N N ++Q++AP+VDIQA+H
Sbjct: 477 KASLLGDAIAYINELQAKLKSMEAEREKFGSSSRDASGLEANTNAKNQSQAPEVDIQASH 536

Query: 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEK 594
           DEV+VRVSCPLD HPASRVIQAFK++QITV++SKL+  ND VFHTFVIKSQGS+QLTKEK
Sbjct: 537 DEVIVRVSCPLDLHPASRVIQAFKESQITVLDSKLTAANDTVFHTFVIKSQGSDQLTKEK 596

Query: 595 LIAAFSCESSSIQPLSSVG 613
           L+A FS ES+S+Q LSSVG
Sbjct: 597 LMAVFSHESNSLQQLSSVG 615

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225470922|ref|XP_002264409.1| PREDICTED: transcription factor bHLH13 [Vitis vinifera] Back     alignment and taxonomy information
>gi|149347186|gb|ABR23669.1| Myc2 bHLH protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|449531709|ref|XP_004172828.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432042|ref|XP_004133809.1| PREDICTED: transcription factor bHLH13-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571248|ref|XP_003553791.1| PREDICTED: transcription factor bHLH13-like [Glycine max] Back     alignment and taxonomy information
>gi|224067996|ref|XP_002302637.1| predicted protein [Populus trichocarpa] gi|222844363|gb|EEE81910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356520278|ref|XP_003528790.1| PREDICTED: transcription factor bHLH13-like [Glycine max] Back     alignment and taxonomy information
>gi|356560147|ref|XP_003548357.1| PREDICTED: transcription factor bHLH13-like [Glycine max] Back     alignment and taxonomy information
>gi|356504177|ref|XP_003520875.1| PREDICTED: transcription factor bHLH13-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query613
TAIR|locus:2035237590 AT1G01260 "AT1G01260" [Arabido 0.928 0.964 0.542 1e-148
TAIR|locus:2039094566 AIB "AT2G46510" [Arabidopsis t 0.383 0.415 0.630 5e-138
TAIR|locus:2141055589 MYC4 "AT4G17880" [Arabidopsis 0.323 0.336 0.406 3.4e-58
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.336 0.347 0.411 5.4e-58
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.396 0.347 0.371 7.2e-57
TAIR|locus:2035609623 MYC2 "AT1G32640" [Arabidopsis 0.859 0.845 0.326 9.6e-57
TAIR|locus:2172932511 NIG1 "AT5G46830" [Arabidopsis 0.252 0.303 0.412 5e-41
TAIR|locus:2130619467 AT4G16430 "AT4G16430" [Arabido 0.471 0.618 0.338 2.5e-38
TAIR|locus:2026629596 EGL3 "AT1G63650" [Arabidopsis 0.331 0.340 0.303 1.5e-32
TAIR|locus:504954829637 GL3 "AT5G41315" [Arabidopsis t 0.334 0.321 0.318 4.2e-32
TAIR|locus:2035237 AT1G01260 "AT1G01260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
 Identities = 340/627 (54%), Positives = 421/627 (67%)

Query:     6 NMGGNLWNDEDKAMGAAVLGTRAFDYLLTSSISNENLLMAVGSDEDLQNKLSDLVDRPNA 65
             N+G  +WN++DKA+ A++LG RA DYLL++S+SN NLLM +GSDE+LQNKLSDLV+RPNA
Sbjct:     2 NIGRLVWNEDDKAIVASLLGKRALDYLLSNSVSNANLLMTLGSDENLQNKLSDLVERPNA 61

Query:    66 SNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQQRMRKR 125
             SNFSWNYAIFWQISRSK+GD VL WGDG CREPKEGE+SE  RI ++  E+ET Q MRKR
Sbjct:    62 SNFSWNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTMRKR 121

Query:   126 VLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLD 185
             VLQKLH LFGGS+E+N ALGLDRVTDTEMF L+SMYFSFPRGEGGPGKCFAS K VWL D
Sbjct:   122 VLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGPGKCFASAKPVWLSD 181

Query:   186 ALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLELVHSIRATFSSNSS 245
              +   SDYCVRSFLAKSA IQT+VL+ TD GVVELGS   +PES + + SIR+ F+S  S
Sbjct:   182 VVNSGSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSTSCLPESEDSILSIRSLFTS--S 239

Query:   246 LATVKPMAVALPVT-SEKKDENG--LFP----NLGILDRVEGVPKIFGQELNNSGHVHTP 298
             L  V+  AVALPVT +EK D+N   +F     N G L   +   +   Q+       H  
Sbjct:   240 LPPVR--AVALPVTVAEKIDDNRTKIFGKDLHNSGFLQHHQHHQQ--QQQQPPQQQQHRQ 295

Query:   299 FSREKLAVRKMEER-PS-WEAY-TNGNRTAF--PGIRNG-VHGFSWGNVQGVKQGIATEI 352
             F REKL VRKM++R P   +AY  NGNR  F  PG  N  +   +W   +   + I    
Sbjct:   296 F-REKLTVRKMDDRAPKRLDAYPNNGNRFMFSNPGTNNNTLLSPTWVQPENYTRPI---- 350

Query:   353 FGSQTNNLQELVNGVREDFRINHYQSQK---PMQMQIDFSGATSRPNVIARPLNADSEHS 409
                   N++E+ +     F      SQ+   P QMQIDFS A+SR    A   N+D E  
Sbjct:   351 ------NVKEVPSTDEFKFLPLQQSSQRLLPPAQMQIDFSAASSR----ASENNSDGEGG 400

Query:   410 D--VEASCRDERTGTVEEXXXXXXXXXXXXXXEEPLNHVEAERQRREKLNQRFYALRAVV 467
                 +A   DE +G                   E LNHVEAERQRREKLNQRFYALR+VV
Sbjct:   401 GEWADAVGADE-SGNNRPRKRGRRPANGRA---EALNHVEAERQRREKLNQRFYALRSVV 456

Query:   468 PNISKMDKASLLGDAIAYINELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPD 527
             PNISKMDKASLLGDA++YINEL AKLKVMEAERE L         + SNP +   +   D
Sbjct:   457 PNISKMDKASLLGDAVSYINELHAKLKVMEAERERLG--------YSSNPPISLDS---D 505

Query:   528 VDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGS 587
             +++Q + ++V VR++CPL+SHPASR+  AF+++++ V+ S L    D V HTFV+KS   
Sbjct:   506 INVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVKS--- 562

Query:   588 EQLTKEKLIAAFSCE-SSSIQPLSSVG 613
             E+LTKEKLI+A S E ++S+Q  +S G
Sbjct:   563 EELTKEKLISALSREQTNSVQSRTSSG 589
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0009694 "jasmonic acid metabolic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
TAIR|locus:2039094 AIB "AT2G46510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141055 MYC4 "AT4G17880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2035609 MYC2 "AT1G32640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172932 NIG1 "AT5G46830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130619 AT4G16430 "AT4G16430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026629 EGL3 "AT1G63650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954829 GL3 "AT5G41315" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LNJ5BH013_ARATHNo assigned EC number0.54920.91190.9474yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query613
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 1e-71
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 7e-14
smart0035353 smart00353, HLH, helix loop helix domain 1e-12
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 8e-11
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score =  227 bits (582), Expect = 1e-71
 Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 18/189 (9%)

Query: 52  LQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPN 111
           LQ +L  LV+     +  W+YAIFWQ+S  +S   VLGWGDG      +  ++ A     
Sbjct: 1   LQQRLQALVE-----SEQWSYAIFWQLSPDQS--GVLGWGDGYYNGEIKTRKTVA----- 48

Query: 112 IRLEDETQQRMRKRVLQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGP 171
                E     RK+VL++L++L  GS  D  AL  + +TDTE F+L SM FSFP GEG P
Sbjct: 49  -----EELGLQRKKVLRELYSLLSGSR-DAAALSPEDLTDTEWFYLVSMTFSFPPGEGLP 102

Query: 172 GKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVELGSVRSVPESLE 231
           GK FASG H+WL  A +L S  C RS+LA+SA IQTIV I    GVVELGS   +PE L 
Sbjct: 103 GKAFASGSHIWLSGANELDSSNCSRSWLAQSAGIQTIVCIPVPGGVVELGSTEKIPEDLN 162

Query: 232 LVHSIRATF 240
           LV  +++ F
Sbjct: 163 LVQHVKSLF 171

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 613
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.2
smart0035353 HLH helix loop helix domain. 99.18
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.17
KOG1318411 consensus Helix loop helix transcription factor EB 98.63
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.36
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.11
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.97
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.89
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 97.78
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 97.78
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 97.45
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.39
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.34
KOG0561 373 consensus bHLH transcription factor [Transcription 97.28
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.26
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.17
KOG4029228 consensus Transcription factor HAND2/Transcription 96.92
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 96.73
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 96.65
PLN0321793 transcription factor ATBS1; Provisional 96.59
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.19
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 96.03
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 95.82
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 95.81
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 95.72
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 95.64
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 95.61
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 95.58
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 95.52
PRK05007884 PII uridylyl-transferase; Provisional 95.5
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 95.41
PRK0019490 hypothetical protein; Validated 95.02
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 94.57
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 94.27
PRK01759854 glnD PII uridylyl-transferase; Provisional 93.6
KOG3910632 consensus Helix loop helix transcription factor [T 93.44
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 93.1
PRK00275895 glnD PII uridylyl-transferase; Provisional 93.0
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 92.91
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 92.61
PRK03381774 PII uridylyl-transferase; Provisional 92.59
KOG4447173 consensus Transcription factor TWIST [Transcriptio 92.56
PRK04374869 PII uridylyl-transferase; Provisional 92.47
PRK03381774 PII uridylyl-transferase; Provisional 92.17
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 92.0
PRK05092931 PII uridylyl-transferase; Provisional 91.64
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 91.52
PRK03059856 PII uridylyl-transferase; Provisional 91.0
cd0211660 ACT ACT domains are commonly involved in specifica 90.86
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 90.69
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 90.49
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 90.21
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 90.19
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 90.06
PRK05007 884 PII uridylyl-transferase; Provisional 90.02
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 89.35
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 89.26
PRK01759854 glnD PII uridylyl-transferase; Provisional 89.0
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 88.98
PRK04435147 hypothetical protein; Provisional 88.96
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 88.53
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 88.37
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 87.73
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 87.27
PRK00275 895 glnD PII uridylyl-transferase; Provisional 86.76
PRK08577136 hypothetical protein; Provisional 86.7
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 86.51
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 86.21
PRK03059856 PII uridylyl-transferase; Provisional 86.03
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 85.61
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 85.33
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 85.06
PRK05092 931 PII uridylyl-transferase; Provisional 85.02
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 84.84
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 84.74
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 83.79
PRK07334403 threonine dehydratase; Provisional 83.2
PRK04374869 PII uridylyl-transferase; Provisional 82.1
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 80.44
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 80.24
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 80.05
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=3.8e-54  Score=412.75  Aligned_cols=163  Identities=50%  Similarity=0.903  Sum_probs=151.1

Q ss_pred             HHHHHHHhccCCCCCCCCcEEEEEeeeccCCCCCeeEEEcccccCCCCCCCcccccccCCcccchHHHHHHHHHHHHHHh
Q 048817           52 LQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQQRMRKRVLQKLH  131 (613)
Q Consensus        52 Lq~~L~~lv~~~~~~~~~WtYAIFWq~s~~~~g~~vL~WgDGy~~~~~~~e~~~~~~~~~~~~~~~~~q~~rk~vl~~L~  131 (613)
                      |||+||+||+     +.+|+||||||++++++   +|+||||||+++++.+...           ++.+.+|+++||+|+
T Consensus         1 Lq~~Lr~lv~-----~~~W~YaVFWk~~~~~~---~L~W~DG~~~g~~~~~~~~-----------~~~~~~~~~~l~~l~   61 (163)
T PF14215_consen    1 LQQRLRSLVE-----NSQWTYAVFWKLSPDNS---VLVWGDGYCNGPKETRKNG-----------EEEQEQRSKVLRELH   61 (163)
T ss_pred             ChHHHHHHhC-----CCCCcEEEEeEEcCCCC---eeeEcceeecCCcccccch-----------hhccchhhhHHHHHh
Confidence            7999999999     89999999999999874   9999999999766543221           257888999999999


Q ss_pred             hhcCCCCccccccccccccccceeeeccceeecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEE
Q 048817          132 TLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLI  211 (613)
Q Consensus       132 ~l~~~~~~~~~al~~e~vtd~EwFyl~sm~~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivci  211 (613)
                      ++++     ++++.+++|+|+||||++||+|+|  |+|+|||||++|+|+||++++.+..++|+|+++||++||||||||
T Consensus        62 ~~~~-----~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~I  134 (163)
T PF14215_consen   62 SSFS-----SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCI  134 (163)
T ss_pred             hhcc-----ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEE
Confidence            9997     456788999999999999999999  999999999999999999999999999999999999999999999


Q ss_pred             EcCCceEeecccccccCCHHHHHHHHHHh
Q 048817          212 STDAGVVELGSVRSVPESLELVHSIRATF  240 (613)
Q Consensus       212 P~~~GVvELGSt~~I~E~~~lv~~ik~~F  240 (613)
                      |+++||||||||++|+||++||++||++|
T Consensus       135 Pv~~GVvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen  135 PVPNGVVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             EecCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence            99999999999999999999999999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query613
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 1e-17
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 2e-16
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 2e-14
1hlo_A80 Protein (transcription factor MAX); transcriptiona 6e-14
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 4e-12
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 1e-09
4f3l_A 361 Mclock, circadian locomoter output cycles protein 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 1e-06
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 5e-06
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 9e-06
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 2e-05
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 444 NHVEAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAIAYINELQAKLKVMEAER 500
            H   ERQRR +L + F+ALR  +P +    K  K  +L  A AYI  +QA+ + + +E 
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68

Query: 501 ENL 503
           + L
Sbjct: 69  DLL 71
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query613
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.54
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.44
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.43
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.4
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.4
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.38
4ati_A118 MITF, microphthalmia-associated transcription fact 99.38
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.36
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.35
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.28
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.23
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.93
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.91
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.74
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.53
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.48
4ath_A83 MITF, microphthalmia-associated transcription fact 98.09
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.68
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 96.45
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 94.33
1u8s_A 192 Glycine cleavage system transcriptional repressor, 94.32
2nyi_A195 Unknown protein; protein structure initiative, PSI 93.44
2nyi_A 195 Unknown protein; protein structure initiative, PSI 93.28
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 93.25
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 93.18
1u8s_A192 Glycine cleavage system transcriptional repressor, 92.81
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 92.57
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 92.44
1vhm_A195 Protein YEBR; structural genomics, unknown functio 92.3
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 92.01
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 91.44
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 90.8
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 90.73
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 90.48
2qyb_A181 Membrane protein, putative; GAF domain, domain of 90.28
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 89.08
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 88.94
3hcy_A151 Putative two-component sensor histidine kinase PR; 88.88
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 88.02
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 87.51
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 87.35
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 87.16
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 86.47
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 86.41
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 85.88
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 83.64
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 81.36
2jhe_A 190 Transcription regulator TYRR; aromatic hydrocarbon 81.22
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.54  E-value=5.4e-15  Score=125.66  Aligned_cols=63  Identities=27%  Similarity=0.415  Sum_probs=60.0

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817          442 PLNHVEAERQRREKLNQRFYALRAVVPNI-SKMDKASLLGDAIAYINELQAKLKVMEAERENLS  504 (613)
Q Consensus       442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~  504 (613)
                      +.+|+.+||+||++||++|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+.+.|.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999986 8999999999999999999999999999888775
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 613
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 2e-15
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 2e-15
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 4e-15
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 1e-14
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 6e-14
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 4e-13
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 2e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 9e-12
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 444 NHVEAERQRREKLNQRFYALRAVVP--NISKMDKASLLGDAIAYINELQAKLKVMEAERE 501
           +H   ER+RR+ +   F++LR  VP     K  +A +L  A  YI  ++ K    + + +
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 502 NLSGNSRDL 510
           +L   +  L
Sbjct: 65  DLKRQNALL 73
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query613
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.42
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.38
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.35
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.28
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.25
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.22
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 96.67
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.07
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 95.19
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 93.57
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 91.88
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 88.33
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 87.76
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 86.04
d1sc6a384 Phosphoglycerate dehydrogenase, regulatory (C-term 80.59
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.2e-14  Score=115.74  Aligned_cols=63  Identities=27%  Similarity=0.404  Sum_probs=58.7

Q ss_pred             CccccHHHHHHHHHHHHHHHHHhhcCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817          442 PLNHVEAERQRREKLNQRFYALRAVVPN-ISKMDKASLLGDAIAYINELQAKLKVMEAERENLS  504 (613)
Q Consensus       442 ~~~H~~~ER~RR~kln~~f~~LrslvP~-~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~  504 (613)
                      +.+|+.+||+||++||+.|..|++|||+ ..|++|++||.+||+||+.|+++++.|+.+...+.
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999997 56999999999999999999999999998887664
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure