Citrus Sinensis ID: 048818

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MKPPNRRFVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAIPGKGQRGISVFC
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccEEEEccccHHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEEEccccHHHHHHHHcccccccccccccccccccccccccccHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEcccHHcHHHHHHHHHcccccccccccccccccccEEccccccHHEEcccEEEEEEccccccccccccHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcHHHHHHccccEEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mkppnrrfvverpLILGALLTFAVTAAFLITGLSRTmkasipriyaidstpAAMQTQLLAIIHYAtsrdipqltlpeirvpfdallglapcnlLVFGLGHDSlmwaslnprgttiflEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSyryekyclpphvhlkgntrcKLVLNelpddvynrewdvifidgprgyyaeapgrMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWhfrippgayaipgkgqrgisvfc
Flexible Loop (DISEMBL)
MKPPNRRFVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTIlarapalrvhtVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNelpddvynrEWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRippgayaipgkgqrgisvfc
Low Complexity Region (SEG)
MKPPNRRFVVERPLIlgalltfavtaaflITGLSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAIPGKGQRGISVFC
Disordered region (IsUnstruct)
*******FVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAIPGK*********
Disordered Region (DISOPRED)
**********ERPLILGALLTFAVTAAFLITG*************************LLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRY**YCLP*HVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMA*****RGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPP**************VFC
Disordered Region (DISEMBL)
MKPPNRRFVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAIPGKGQRGISVFC
Disordered Region (DISPRO)
*****RRFVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPG****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKPPNRRFVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAIPGKGQRGISVFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q6NMK1	282	Glucuronoxylan 4-O-methyl	no	no	0.707	0.712	0.476	2e-49
Q9T0F7	290	Glucuronoxylan 4-O-methyl	no	no	0.718	0.703	0.458	1e-47
Q9LQ32	297	Glucuronoxylan 4-O-methyl	no	no	0.714	0.683	0.454	5e-47
Q9FH92	317	Protein IRX15-LIKE OS=Ara	no	no	0.869	0.779	0.389	1e-38
Q9SNE5	322	Protein IRREGULAR XYLEM 1	no	no	0.711	0.627	0.435	1e-38

>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 129/210 (61%), Gaps = 9/210 (4%)

Query: 60  AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
           A+IHY+TS   PQ TL EI V    L   +PCN LVFGLGHDSLMW+SLN  G T+FLEE
Sbjct: 63  ALIHYSTSVITPQQTLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEE 122

Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTR---CKL 176
           D   +  I  R P L  + VTY + + +AD+L+   +       P     G+ R   C+L
Sbjct: 123 DEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGK------GPECTAIGDPRYSMCQL 176

Query: 177 VLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVD 236
            L  LP ++Y   WD+I +D P GYY EAPGRM  I+TA +MAR RK  G T VF+HDV+
Sbjct: 177 ALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVN 236

Query: 237 RKVEKAYAEEFLCRKYFVKVVGKLWHFRIP 266
           R++E  +++ FLC  Y  K  G+L HF IP
Sbjct: 237 REIEDKFSKAFLCEGYMKKQEGRLRHFIIP 266

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 2

>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 125/207 (60%), Gaps = 3/207 (1%)

Query: 60  AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
           A++HY TS   PQ T  E+ V    L   +PCN LVFGLGHDSLMWASLN  G T+FLEE
Sbjct: 68  ALVHYVTSEITPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFLEE 127

Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLN 179
           D   + T+  + P L  + V Y T + +++ LM   R E  C    V    +++C L L 
Sbjct: 128 DEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTED-C--KAVSDPRDSKCALSLK 184

Query: 180 ELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKV 239
             P DVY  +WDVI +D P GY+ EAPGRM+ I+TA ++AR R   G T VF+HD++R V
Sbjct: 185 GFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPV 244

Query: 240 EKAYAEEFLCRKYFVKVVGKLWHFRIP 266
           E  ++  FLC  Y  +  G+L HF IP
Sbjct: 245 EDEFSVAFLCGGYMKEQQGRLRHFNIP 271

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1

 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 127/207 (61%), Gaps = 4/207 (1%)

Query: 60  AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
           A++HY TS   PQ T  E+ V    L   +PCN LVFGLGHDSLMWASLN  G T+F+EE
Sbjct: 76  ALVHYVTSNVTPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFIEE 135

Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLN 179
           D   +  +  + P L  + V Y T + ++D LM   R E+ C    V    N++C L L 
Sbjct: 136 DQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEE-CRS--VSDPRNSKCDLALK 192

Query: 180 ELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKV 239
           + P D Y  +WD+I +D P GY+ EAPGRM+ I+TA ++AR R+  G T VF+HDV+R V
Sbjct: 193 DFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNRED-GETDVFVHDVNRPV 251

Query: 240 EKAYAEEFLCRKYFVKVVGKLWHFRIP 266
           E  ++  FLC+ Y  +  G+L HF IP
Sbjct: 252 EDEFSATFLCKGYMREQNGRLRHFTIP 278

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/267 (38%), Positives = 148/267 (55%), Gaps = 20/267 (7%)

Query: 14  LILGALLTFAVTAAFLITGL--------SRTMKASIPRIYAIDSTPAAMQ----TQLLAI 61
           L L A ++F  T AFL+T L        S+   A++        T A +     T + A+
Sbjct: 27  LWLLAFVSF-FTIAFLLTLLYTTDSIISSKNNSATVSSAVNSAVTTATISQLPTTAINAM 85

Query: 62  IHYAT-SRDIPQLTLPEIRVPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
           +HYA+ S D   ++  E++   D L   +P CNLLVFGL H++L+W SLN  G T+F+EE
Sbjct: 86  LHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEE 145

Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRY--EKYCLPPHVHLKGNTRCKLV 177
           +           P + V  V Y T   EA  L+S+ +      C P    L  +  CKL 
Sbjct: 146 NRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSD--CKLG 203

Query: 178 LNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRG-VTHVFLHDVD 236
           LN+LP+ VY+ +WDVI +DGPRG   + PGRM++IFTAAV+AR++K     THVF+HD  
Sbjct: 204 LNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYY 263

Query: 237 RKVEKAYAEEFLCRKYFVKVVGKLWHF 263
           R VE+   +EFLCR+  V+    L H+
Sbjct: 264 RDVERLCGDEFLCRENLVESNDLLAHY 290

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 127/209 (60%), Gaps = 7/209 (3%)

Query: 60  AIIHYAT-SRDIPQLTLPEIRVPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGTTIFL 117
           A++HYA+ S D   ++  E++   D L   AP CNLLVFGL H++L+W SLN  G T+F+
Sbjct: 91  ALLHYASRSNDSFHMSYGEMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVFI 150

Query: 118 EEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYE--KYCLPPHVHLKGNTRCK 175
           EE+           P + V  V Y T  +EA  L+++ +      C P    L  +  CK
Sbjct: 151 EENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSD--CK 208

Query: 176 LVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRG-VTHVFLHD 234
           L LN+LP+ VY+ +WDVIF+DGPRG   E PGRM++IFTAAV+AR++K     THVF+HD
Sbjct: 209 LGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPKTHVFVHD 268

Query: 235 VDRKVEKAYAEEFLCRKYFVKVVGKLWHF 263
             R VE+   +EFLCR+  V+    L H+
Sbjct: 269 YYRDVERLCGDEFLCRENLVESNDLLAHY 297

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
255536883	298	conserved hypothetical protein [Ricinus	0.922	0.879	0.618	2e-90
225451457	282	PREDICTED: uncharacterized protein LOC10	0.933	0.939	0.590	6e-89
255547704	285	conserved hypothetical protein [Ricinus	0.767	0.764	0.697	1e-87
225425410	282	PREDICTED: uncharacterized protein LOC10	0.933	0.939	0.585	5e-85
297738460	312	unnamed protein product [Vitis vinifera]	0.933	0.849	0.585	7e-85
224075563	285	predicted protein [Populus trichocarpa]	0.964	0.961	0.535	1e-80
356525164	286	PREDICTED: uncharacterized protein LOC10	0.799	0.793	0.638	8e-80
224053495	285	predicted protein [Populus trichocarpa]	0.778	0.775	0.628	1e-79
356538083	284	PREDICTED: uncharacterized protein LOC10	0.926	0.926	0.562	1e-79
356569174	284	PREDICTED: uncharacterized protein LOC10	0.911	0.911	0.569	4e-79

>gi|255536883|ref|XP_002509508.1| conserved hypothetical protein [Ricinus communis] gi|223549407|gb|EEF50895.1| conserved hypothetical protein [Ricinus communis]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/270 (61%), Positives = 194/270 (71%), Gaps = 8/270 (2%)

Query: 5   NRRFVVERPLILGALLTFAVTAAFLITG------LSRTMKASIPRIYAIDSTP--AAMQT 56
           +R+F+ ERP  L  L+  + TAA LI G       SR    S+   Y   +T   AA  T
Sbjct: 14  HRQFLSERPWFLAVLIAVSFTAALLIAGSITSSSSSRPFLCSLSGAYTTAATEDYAATPT 73

Query: 57  QLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIF 116
           QLLAI+HYATSR +PQ +  EI + FD L  LAPCN LVFGLGHDSLMW SLNPRG T+F
Sbjct: 74  QLLAILHYATSRVVPQQSRAEISLSFDVLQSLAPCNFLVFGLGHDSLMWTSLNPRGNTLF 133

Query: 117 LEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKL 176
           LEED K VHT+L RAP LR H V Y T L+EAD L++SY+ EK C+ P V LKGNT CKL
Sbjct: 134 LEEDPKWVHTVLQRAPNLRAHVVKYPTQLHEADKLLASYKEEKECMGPDVRLKGNTECKL 193

Query: 177 VLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVD 236
            LN LPD+VY +EWDVI ID PRGY+A+APGRM  IF+AAVM+RAR   GVTHVFLHDVD
Sbjct: 194 ALNTLPDEVYGKEWDVIMIDAPRGYFAQAPGRMGAIFSAAVMSRARTRPGVTHVFLHDVD 253

Query: 237 RKVEKAYAEEFLCRKYFVKVVGKLWHFRIP 266
           R+VEK YA EFLC+KY VK V +LWHF IP
Sbjct: 254 RRVEKLYAMEFLCKKYLVKGVSRLWHFEIP 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451457|ref|XP_002274054.1| PREDICTED: uncharacterized protein LOC100265182 [Vitis vinifera]

 Score =  333 bits (853), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 160/271 (59%), Positives = 194/271 (71%), Gaps = 6/271 (2%)

Query: 5   NRRFVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYA------IDSTPAAMQTQL 58
           NRR + ERP +L  ++   + AA LI    RT   S+   ++        S  +  QTQL
Sbjct: 3   NRRVLFERPWLLTVVIGGMIGAAILINSFGRTSSNSLLCSFSGAYTRPDHSDDSVAQTQL 62

Query: 59  LAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLE 118
           +AI+HYATSR +PQ +L EIRV FD L  LAPCN LV+GLGHDS+MW+S NP+GTTIFLE
Sbjct: 63  IAILHYATSRVVPQQSLAEIRVSFDVLQSLAPCNFLVYGLGHDSVMWSSFNPKGTTIFLE 122

Query: 119 EDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVL 178
           ED K V T+L +AP L  HTV YRTHL EAD L+ SY+ E  CLPP V L+ NT C+L L
Sbjct: 123 EDPKWVQTVLKQAPNLLAHTVRYRTHLSEADQLLRSYKSEPACLPPDVRLRDNTACRLAL 182

Query: 179 NELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRK 238
             LP++VY+ EWD+I ID PRGY+ EAPGRM  IFTAAVMARARK +GVTHVFLHDV+R+
Sbjct: 183 TGLPEEVYDTEWDLIMIDAPRGYFPEAPGRMGAIFTAAVMARARKRQGVTHVFLHDVNRR 242

Query: 239 VEKAYAEEFLCRKYFVKVVGKLWHFRIPPGA 269
           +EK YAEEFLC+K  VK  G+LWHF IP  A
Sbjct: 243 IEKVYAEEFLCKKNLVKAEGRLWHFAIPSAA 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547704|ref|XP_002514909.1| conserved hypothetical protein [Ricinus communis] gi|223545960|gb|EEF47463.1| conserved hypothetical protein [Ricinus communis]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/218 (69%), Positives = 172/218 (78%)

Query: 52  AAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPR 111
           AA   QL AIIHYATSR +PQ +L EI V F+ L  LAPCN LVFGLGHDSLMW+SLNP 
Sbjct: 58  AATPIQLQAIIHYATSRVVPQQSLGEISVTFNVLKSLAPCNFLVFGLGHDSLMWSSLNPH 117

Query: 112 GTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGN 171
           GTT+FLEED K + T+LA AP L  H V YRT L EA+ L+SSYR E YCLP   +L+GN
Sbjct: 118 GTTLFLEEDPKWIQTVLANAPTLHAHAVQYRTQLQEANQLLSSYRSEPYCLPSKAYLRGN 177

Query: 172 TRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVF 231
            RCKL L  LPD+VY++EWD+I ID PRGY+ EAPGRMA IF+AAVMARARK+ G THVF
Sbjct: 178 YRCKLALTGLPDEVYDKEWDLIMIDAPRGYFNEAPGRMAAIFSAAVMARARKASGATHVF 237

Query: 232 LHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGA 269
           LHDVDRKVEK YAEEFLCRKY VK VG+LWHF +PP A
Sbjct: 238 LHDVDRKVEKIYAEEFLCRKYLVKAVGRLWHFELPPAA 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425410|ref|XP_002277620.1| PREDICTED: uncharacterized protein LOC100253955 [Vitis vinifera]

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/268 (58%), Positives = 187/268 (69%), Gaps = 3/268 (1%)

Query: 5   NRRFVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDS---TPAAMQTQLLAI 61
            +R ++E+P  L   L   +     I    +    S+   +A +S     +A Q QL AI
Sbjct: 3   KKRHLLEKPWFLRLALVGLIAGVLFIYHFVQNSDHSLLCSFAAESPRADSSATQIQLSAI 62

Query: 62  IHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDS 121
           +HYATSR +PQ TL EI V FD L  LA CN LVFGLG DSLMW+S N RG T+FLEED 
Sbjct: 63  LHYATSRIVPQQTLAEITVSFDVLQSLASCNFLVFGLGFDSLMWSSFNARGDTLFLEEDP 122

Query: 122 KLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNEL 181
           K V T+L  AP LR HTV YRTHL EAD L+S+YR    C+PP  +L+GN RCKL L++L
Sbjct: 123 KWVQTVLKDAPTLRAHTVRYRTHLSEADDLLSTYRSVPECMPPKAYLRGNNRCKLALSDL 182

Query: 182 PDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEK 241
           PD+VY++EWD+I ID PRGY+ EAPGRMA IF+AAVMARAR   GVTHVFLHDVDR+VEK
Sbjct: 183 PDEVYDKEWDLIMIDAPRGYFPEAPGRMAAIFSAAVMARARVRPGVTHVFLHDVDRRVEK 242

Query: 242 AYAEEFLCRKYFVKVVGKLWHFRIPPGA 269
            YAEE LCRKY V  VG+LWHF IPP A
Sbjct: 243 VYAEELLCRKYQVGSVGRLWHFEIPPAA 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738460|emb|CBI27661.3| unnamed protein product [Vitis vinifera]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 157/268 (58%), Positives = 187/268 (69%), Gaps = 3/268 (1%)

Query: 5   NRRFVVERPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDS---TPAAMQTQLLAI 61
            +R ++E+P  L   L   +     I    +    S+   +A +S     +A Q QL AI
Sbjct: 2   KKRHLLEKPWFLRLALVGLIAGVLFIYHFVQNSDHSLLCSFAAESPRADSSATQIQLSAI 61

Query: 62  IHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDS 121
           +HYATSR +PQ TL EI V FD L  LA CN LVFGLG DSLMW+S N RG T+FLEED 
Sbjct: 62  LHYATSRIVPQQTLAEITVSFDVLQSLASCNFLVFGLGFDSLMWSSFNARGDTLFLEEDP 121

Query: 122 KLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNEL 181
           K V T+L  AP LR HTV YRTHL EAD L+S+YR    C+PP  +L+GN RCKL L++L
Sbjct: 122 KWVQTVLKDAPTLRAHTVRYRTHLSEADDLLSTYRSVPECMPPKAYLRGNNRCKLALSDL 181

Query: 182 PDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEK 241
           PD+VY++EWD+I ID PRGY+ EAPGRMA IF+AAVMARAR   GVTHVFLHDVDR+VEK
Sbjct: 182 PDEVYDKEWDLIMIDAPRGYFPEAPGRMAAIFSAAVMARARVRPGVTHVFLHDVDRRVEK 241

Query: 242 AYAEEFLCRKYFVKVVGKLWHFRIPPGA 269
            YAEE LCRKY V  VG+LWHF IPP A
Sbjct: 242 VYAEELLCRKYQVGSVGRLWHFEIPPAA 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075563|ref|XP_002304685.1| predicted protein [Populus trichocarpa] gi|222842117|gb|EEE79664.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 152/284 (53%), Positives = 186/284 (65%), Gaps = 10/284 (3%)

Query: 1   MKPPNRRFVVERPLILGALLTFAVTAAFLITGLSRTMK--------ASIPRIYAIDSTPA 52
           MK P  +F  E+  +L   L+  +  AFL + L R++         +         +   
Sbjct: 1   MKRP--QFTPEKSCLLAVALSGLIIGAFLFSNLIRSVDNISSFGLCSLASAKARAAADDD 58

Query: 53  AMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRG 112
           A  TQL +I+HYATS+ +PQ +L EI V FD L   +PCN LVFGLG DSLMW SLNP G
Sbjct: 59  ATPTQLQSILHYATSKIVPQQSLAEISVTFDVLKTRSPCNFLVFGLGFDSLMWTSLNPHG 118

Query: 113 TTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNT 172
           TT+FLEED K V TI+ +AP L  HTV YRT L EA+ L+ +YR E  C P   +L+GN 
Sbjct: 119 TTLFLEEDPKWVQTIVKKAPTLNAHTVQYRTQLQEANSLLKTYRSEPLCSPSKAYLRGNY 178

Query: 173 RCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFL 232
           +CKL L  LPD+VY++EWD+I ID PRGY+ EAPGRMA IF+A VMAR RK  GVTHVFL
Sbjct: 179 KCKLALTGLPDEVYDKEWDLIMIDAPRGYFPEAPGRMAAIFSAVVMARGRKGSGVTHVFL 238

Query: 233 HDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAIPGKG 276
           HDVDRKVEK +AEEFLCRK  VK VG+LWHF IP    +    G
Sbjct: 239 HDVDRKVEKMFAEEFLCRKNLVKAVGRLWHFEIPAANVSQSSGG 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525164|ref|XP_003531197.1| PREDICTED: uncharacterized protein LOC100820087 [Glycine max]

 Score =  303 bits (775), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 150/235 (63%), Positives = 169/235 (71%), Gaps = 8/235 (3%)

Query: 51  PAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGL-APCNLLVFGLGHDSLMWASLN 109
           P +MQ  L AI+HYATS+ +PQ +L EI + FD L  L  P N LVFGLG DSLMWASLN
Sbjct: 59  PTSMQ--LKAILHYATSQIVPQQSLSEITITFDVLQSLHRPANFLVFGLGRDSLMWASLN 116

Query: 110 PRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLK 169
           P GTT+FLEED K    +   AP LR HTV YRT L EAD LMSSYR E  C P    L+
Sbjct: 117 PHGTTLFLEEDPKWFGIVTKEAPYLRAHTVRYRTQLREADSLMSSYRSEPACFPATATLR 176

Query: 170 GNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTH 229
           GN RCKL L+ LPD+VY +EWD+I ID P+GY+AEAPGRMA IF+AAVMAR RK  GVTH
Sbjct: 177 GNERCKLALHNLPDEVYEKEWDLIMIDAPKGYFAEAPGRMAAIFSAAVMARDRKGSGVTH 236

Query: 230 VFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAIPGKGQRGISVFC 284
           VFLHDVDRKVEK YAEEFLCRK+ VK VG+LWHF IPP      G   R  + FC
Sbjct: 237 VFLHDVDRKVEKVYAEEFLCRKHLVKGVGRLWHFEIPP-----MGNNTRDYARFC 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053495|ref|XP_002297842.1| predicted protein [Populus trichocarpa] gi|118483182|gb|ABK93495.1| unknown [Populus trichocarpa] gi|222845100|gb|EEE82647.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/221 (62%), Positives = 163/221 (73%)

Query: 56  TQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTI 115
           TQL +I+HYATS+ +PQ +L EI V FD L   +PCN LVFGLG DSLMW SLNP GTT+
Sbjct: 62  TQLQSILHYATSKIVPQQSLAEISVTFDVLKTRSPCNFLVFGLGFDSLMWTSLNPHGTTL 121

Query: 116 FLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCK 175
           FLEED K V TI+   P L  HTV Y T L EAD L+ +YR E  C P   +L+GN +C+
Sbjct: 122 FLEEDPKWVQTIVKNTPTLNAHTVQYLTQLKEADSLLKTYRSEPLCSPSKAYLRGNYKCR 181

Query: 176 LVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDV 235
           L L  LPD+VY++EWD+I ID PRGY+ EAPGRMA IF+AAVMAR RK  GVTHVFLHDV
Sbjct: 182 LALTGLPDEVYDKEWDLIMIDAPRGYFPEAPGRMAAIFSAAVMARERKGSGVTHVFLHDV 241

Query: 236 DRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAIPGKG 276
           +R+VEK +AEEFLCRKY VK VG+LWHF IPP A      G
Sbjct: 242 NRRVEKMFAEEFLCRKYLVKAVGRLWHFEIPPAANVSQSDG 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538083|ref|XP_003537534.1| PREDICTED: uncharacterized protein LOC100789499 [Glycine max]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/272 (56%), Positives = 181/272 (66%), Gaps = 9/272 (3%)

Query: 5   NRRFVVERPLILGALLTFAVTAAFLITGLSRTMKAS--IPRIYAIDSTP------AAMQT 56
           NR  V ER   +G  +   + A   ++   RT + S   P    I S         A   
Sbjct: 3   NRYLVPERRWFVGLAVVGLIGAVLFLSNAIRTSETSYVCPGALGIRSKTRTEFSYDASPI 62

Query: 57  QLLAIIHYATSRDIPQLTLPEIRVPFDALLGLA-PCNLLVFGLGHDSLMWASLNPRGTTI 115
           QL AI+HYATSR +PQ ++ EI++  D +  L  P N LVFGLGHDSLMWAS NP GTT+
Sbjct: 63  QLRAIMHYATSRVVPQQSVSEIKISLDVIKSLGRPINFLVFGLGHDSLMWASFNPGGTTV 122

Query: 116 FLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCK 175
           FLEED K VH+IL  AP LR HTV YRT L +A  L++SYR E  C P   +L+GN  CK
Sbjct: 123 FLEEDPKWVHSILKDAPGLRAHTVRYRTQLRDAKGLITSYRSEPSCSPTKAYLRGNEACK 182

Query: 176 LVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDV 235
           L L  LPD+VY  EWD+I ID P+GY+AEAPGRMA +F+AAVMAR RK  GVTHVFLHDV
Sbjct: 183 LALENLPDEVYETEWDMIMIDAPKGYFAEAPGRMAAVFSAAVMARNRKESGVTHVFLHDV 242

Query: 236 DRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPP 267
           DRKVEK YAEEFLC+K  VK VG+LWHF IPP
Sbjct: 243 DRKVEKVYAEEFLCKKNLVKGVGRLWHFEIPP 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569174|ref|XP_003552780.1| PREDICTED: uncharacterized protein LOC100791951 [Glycine max]

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 156/274 (56%), Positives = 183/274 (66%), Gaps = 15/274 (5%)

Query: 4   PNRRFVVERPLILGALLTFAVTAAFLITGLSRTMKAS--IPRIYAIDSTP------AAMQ 55
           P RR+ V       A++    TA FL   + RT + S   P    I S         A  
Sbjct: 8   PERRWFVAM-----AVVGLIATAMFLTNAI-RTSETSYLCPGALGIRSKTRTEFSYDASP 61

Query: 56  TQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLA-PCNLLVFGLGHDSLMWASLNPRGTT 114
            QL AI+HYATSR +PQ ++ EI++  D +  L  P N LVFGLGHDSLMWAS NP GTT
Sbjct: 62  IQLRAILHYATSRVVPQQSVSEIKISLDVIKSLGRPINFLVFGLGHDSLMWASFNPGGTT 121

Query: 115 IFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRC 174
           +FLEED K VH+IL  AP LR HTV YRT L +A  L++SYR E  C P   +L+GN  C
Sbjct: 122 VFLEEDPKWVHSILKDAPGLRAHTVRYRTQLRDAKGLLTSYRSEPSCSPTKAYLRGNEAC 181

Query: 175 KLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHD 234
           KL L  LPD+VY  EWD+I ID P+GY+AEAPGRMA +F+AAVMAR RK  GVTHVFLHD
Sbjct: 182 KLALENLPDEVYETEWDLIMIDAPKGYFAEAPGRMAAVFSAAVMARNRKGSGVTHVFLHD 241

Query: 235 VDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPG 268
           VDRKVEK YAEEFLCRK  VK VG+LWHF+IPP 
Sbjct: 242 VDRKVEKVYAEEFLCRKNLVKGVGRLWHFQIPPS 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2010449	289	AT1G27930 "AT1G27930" [Arabido	0.764	0.750	0.603	3.8e-69
TAIR|locus:2019519	291	AT1G67330 "AT1G67330" [Arabido	0.852	0.831	0.530	3.6e-66
TAIR|locus:2013066	295	AT1G71690 "AT1G71690" [Arabido	0.753	0.725	0.474	5.2e-49
TAIR|locus:2012350	282	GXM3 "glucuronoxylan methyltra	0.707	0.712	0.476	1.2e-44
TAIR|locus:2140518	290	GXM2 "glucuronoxylan methyltra	0.757	0.741	0.450	8.1e-44
TAIR|locus:2012728	297	GXMT1 "glucuronoxylan methyltr	0.714	0.683	0.454	1.7e-43
TAIR|locus:2047158	329	AT2G15440 "AT2G15440" [Arabido	0.757	0.653	0.384	8.9e-38
TAIR|locus:2074815	322	IRX15 "AT3G50220" [Arabidopsis	0.813	0.717	0.397	4.9e-37
TAIR|locus:2155518	317	IRX15-L "AT5G67210" [Arabidops	0.725	0.649	0.422	2.1e-36
TAIR|locus:2117378	315	AT4G24910 "AT4G24910" [Arabido	0.661	0.596	0.402	1.8e-32

TAIR|locus:2010449 AT1G27930 "AT1G27930" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 131/217 (60%), Positives = 157/217 (72%)

Query:    53 AMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRG 112
             A   QL AI+HYATS  +PQ  L EI + F+ L  LAP N LVFGLG DSLMWASLNPRG
Sbjct:    60 ATPIQLQAIVHYATSNVVPQQNLAEISISFNILKKLAPANFLVFGLGRDSLMWASLNPRG 119

Query:   113 TTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNT 172
              T+FLEED +    +   +P LR H V YRT L +AD L+ SY+ E  C P   +L+GN 
Sbjct:   120 KTLFLEEDLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPKCFPAKSYLRGNE 179

Query:   173 RCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFL 232
             +CKL L  LPD+ Y+ EWD++ +D P+GY+AEAPGRMA IF+AAVMAR RK  GVTHVFL
Sbjct:   180 KCKLALTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSAAVMARNRKKPGVTHVFL 239

Query:   233 HDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGA 269
             HDV+R+VEK +AEEFLCRKY V   G+LWHF IPP A
Sbjct:   240 HDVNRRVEKTFAEEFLCRKYRVNAAGRLWHFAIPPAA 276

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2019519 AT1G67330 "AT1G67330" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 131/247 (53%), Positives = 162/247 (65%)

Query:    33 LSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCN 92
             L  T K +   I    +TP     QL +I+HYATS  +PQ +  EI +  + L    PCN
Sbjct:    47 LCSTAKNTAASIAKYTATPI----QLQSIVHYATSHTVPQQSFEEISISLNVLKERLPCN 102

Query:    93 LLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLM 152
              LVFGLG DSLMWASLNP GTT+FLEED + +  +L  AP+LR H V YRTHL EA  L+
Sbjct:   103 FLVFGLGRDSLMWASLNPGGTTVFLEEDPEWIEAVLKDAPSLRAHHVQYRTHLSEAGRLL 162

Query:   153 SSYRYEKYCLPPHVH-LKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMAT 211
             S+Y+ E  CLP     ++ N +C L L  LPD+ Y+ EWD+I +D P+GY+ EAPGRMA 
Sbjct:   163 STYKNEPMCLPAKAFPIRYNEKCPLALTSLPDEFYDTEWDLIMVDAPKGYFPEAPGRMAA 222

Query:   212 IFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYA 271
             IF++A+MAR RK  G THVFLHDV+RKVE A+A EFLC KY V  VG+LWHF IP  A  
Sbjct:   223 IFSSAIMARNRKGDGTTHVFLHDVNRKVENAFANEFLCEKYKVNSVGRLWHFEIPNAANM 282

Query:   272 IPGKGQR 278
                 G R
Sbjct:   283 TDQPGDR 289

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2013066 AT1G71690 "AT1G71690" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 103/217 (47%), Positives = 139/217 (64%)

Query:    60 AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
             A++HYA+S   PQ TL EI V    L   +PCN LVFGLGHDSLMWA+LN  G TIFL+E
Sbjct:    75 ALVHYASSNVTPQQTLSEISVTKKELEKKSPCNFLVFGLGHDSLMWATLNHGGRTIFLDE 134

Query:   120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLN 179
             D   +H I  + P+L  + V Y+T + +A+ LM++ +  + C      L+ +T C+L L 
Sbjct:   135 DESWIHQIAEKFPSLESYHVRYKTKVRDAEALMAATKDREECRRVSTDLRVST-CELALK 193

Query:   180 ELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRG-VTHVFLHDVDRK 238
              LP+ VY  EWD+I +D P G++ EAPGRM+ I+TA ++AR RK     T VF+HDVDRK
Sbjct:   194 GLPEVVYETEWDLIMVDAPTGFHEEAPGRMSAIYTAGMIARRRKDEEETTAVFVHDVDRK 253

Query:   239 VEKAYAEEFLCRKYFVKVVGKLWHFRIPPGA-YAIPG 274
             VE  ++ EFLCR Y  K  G+L HF +P    Y + G
Sbjct:   254 VEDEFSMEFLCRDYMTKQEGRLRHFTVPSHRNYGVSG 290

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012350 GXM3 "glucuronoxylan methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 100/210 (47%), Positives = 129/210 (61%)

Query:    60 AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
             A+IHY+TS   PQ TL EI V    L   +PCN LVFGLGHDSLMW+SLN  G T+FLEE
Sbjct:    63 ALIHYSTSVITPQQTLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEE 122

Query:   120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTR---CKL 176
             D   +  I  R P L  + VTY + + +AD+L+   +       P     G+ R   C+L
Sbjct:   123 DEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGK------GPECTAIGDPRYSMCQL 176

Query:   177 VLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVD 236
              L  LP ++Y   WD+I +D P GYY EAPGRM  I+TA +MAR RK  G T VF+HDV+
Sbjct:   177 ALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVN 236

Query:   237 RKVEKAYAEEFLCRKYFVKVVGKLWHFRIP 266
             R++E  +++ FLC  Y  K  G+L HF IP
Sbjct:   237 REIEDKFSKAFLCEGYMKKQEGRLRHFIIP 266

GO:0005576 "extracellular region" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2140518 GXM2 "glucuronoxylan methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 100/222 (45%), Positives = 131/222 (59%)

Query:    49 STP---AAMQTQLL-AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLM 104
             STP     + T L  A++HY TS   PQ T  E+ V    L   +PCN LVFGLGHDSLM
Sbjct:    53 STPQQCTKLPTSLSDALVHYVTSEITPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLM 112

Query:   105 WASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPP 164
             WASLN  G T+FLEED   + T+  + P L  + V Y T + +++ LM   R E  C   
Sbjct:   113 WASLNHGGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTED-CKA- 170

Query:   165 HVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKS 224
              V    +++C L L   P DVY  +WDVI +D P GY+ EAPGRM+ I+TA ++AR R  
Sbjct:   171 -VSDPRDSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYD 229

Query:   225 RGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIP 266
              G T VF+HD++R VE  ++  FLC  Y  +  G+L HF IP
Sbjct:   230 GGETDVFVHDINRPVEDEFSVAFLCGGYMKEQQGRLRHFNIP 271

GO:0005576 "extracellular region" evidence=ISM

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2012728 GXMT1 "glucuronoxylan methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 94/207 (45%), Positives = 127/207 (61%)

Query:    60 AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
             A++HY TS   PQ T  E+ V    L   +PCN LVFGLGHDSLMWASLN  G T+F+EE
Sbjct:    76 ALVHYVTSNVTPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFIEE 135

Query:   120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLN 179
             D   +  +  + P L  + V Y T + ++D LM   R E+ C    V    N++C L L 
Sbjct:   136 DQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEE-CRS--VSDPRNSKCDLALK 192

Query:   180 ELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKV 239
             + P D Y  +WD+I +D P GY+ EAPGRM+ I+TA ++AR R+  G T VF+HDV+R V
Sbjct:   193 DFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNRED-GETDVFVHDVNRPV 251

Query:   240 EKAYAEEFLCRKYFVKVVGKLWHFRIP 266
             E  ++  FLC+ Y  +  G+L HF IP
Sbjct:   252 EDEFSATFLCKGYMREQNGRLRHFTIP 278

GO:0005739 "mitochondrion" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005976 "polysaccharide metabolic process" evidence=IDA

GO:0009808 "lignin metabolic process" evidence=IMP

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2047158 AT2G15440 "AT2G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 88/229 (38%), Positives = 138/229 (60%)

Query:    45 YAIDSTPAAMQTQ---LLAIIHYATSRDIPQLTLP--EIRVPFDALLGLAP-CNLLVFGL 98
             +++ S+P++       L A++HY TS   P  ++   E+    + +    P CNLL+FGL
Sbjct:    63 HSLSSSPSSSSLPPPVLAALLHY-TSSSPPNTSMSFLELSTISNIIHSHGPACNLLIFGL 121

Query:    99 GHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYE 158
              H+SL+W S+N +G T+F++E    V       P +  + V Y T + +A  L+  Y+  
Sbjct:   122 THESLLWRSINFQGRTVFVDESPYSVSKFEQSNPGVEAYEVVYSTKVSQAKKLLGYYKTR 181

Query:   159 KYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVM 218
               C P    L  +  CKL +N+LP+ VY  +WDVI IDGPRGY +++PGRMA IFT+AV+
Sbjct:   182 PECRPVQNLLFSD--CKLGINDLPNFVYEIDWDVILIDGPRGYASDSPGRMAPIFTSAVL 239

Query:   219 ARAR----KSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHF 263
             A+++    K++  T V +H+  RK+E+ Y+EEFLC +  ++VVG L HF
Sbjct:   240 AKSKDFGTKTKK-TDVLVHEFGRKIERVYSEEFLCEENLIEVVGDLGHF 287

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2074815 IRX15 "AT3G50220" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 99/249 (39%), Positives = 144/249 (57%)

Query:    30 ITGLSRTMKASIPRIYAIDSTPAA--------MQTQLL-AIIHYAT-SRDIPQLTLPEIR 79
             I   + ++ A++  +    STP+A        + T  + A++HYA+ S D   ++  E++
Sbjct:    52 IPSKNTSVAAAVAAVVTGGSTPSASSPISNSNLPTSAINALLHYASRSNDSFHMSYGEMK 111

Query:    80 VPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHT 138
                D L   AP CNLLVFGL H++L+W SLN  G T+F+EE+           P + V  
Sbjct:   112 SISDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFD 171

Query:   139 VTYRTHLYEADHLMSSYRYE--KYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFID 196
             V Y T  +EA  L+++ +      C P    L  +  CKL LN+LP+ VY+ +WDVIF+D
Sbjct:   172 VQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVIFVD 229

Query:   197 GPRGYYAEAPGRMATIFTAAVMARARKSRGV--THVFLHDVDRKVEKAYAEEFLCRKYFV 254
             GPRG   E PGRM++IFTAAV+AR++K  G   THVF+HD  R VE+   +EFLCR+  V
Sbjct:   230 GPRGDAHEGPGRMSSIFTAAVLARSKKG-GTPKTHVFVHDYYRDVERLCGDEFLCRENLV 288

Query:   255 KVVGKLWHF 263
             +    L H+
Sbjct:   289 ESNDLLAHY 297

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2155518 IRX15-L "AT5G67210" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 90/213 (42%), Positives = 127/213 (59%)

Query:    56 TQLLAIIHYAT-SRDIPQLTLPEIRVPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGT 113
             T + A++HYA+ S D   ++  E++   D L   +P CNLLVFGL H++L+W SLN  G 
Sbjct:    80 TAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGR 139

Query:   114 TIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRY--EKYCLPPHVHLKGN 171
             T+F+EE+           P + V  V Y T   EA  L+S+ +      C P    L  +
Sbjct:   140 TVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSD 199

Query:   172 TRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGV-THV 230
               CKL LN+LP+ VY+ +WDVI +DGPRG   + PGRM++IFTAAV+AR++K     THV
Sbjct:   200 --CKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHV 257

Query:   231 FLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHF 263
             F+HD  R VE+   +EFLCR+  V+    L H+
Sbjct:   258 FVHDYYRDVERLCGDEFLCRENLVESNDLLAHY 290

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2117378 AT4G24910 "AT4G24910" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 78/194 (40%), Positives = 113/194 (58%)

Query:    77 EIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARA-PA-L 134
             E+++  D +   +PCN+LVFG     LM +S+N RG T+ LE++   +    A   P   
Sbjct:   105 ELKLLSDTVTRRSPCNILVFGFAPQYLMLSSINTRGITVILEDEPAKIMIPKAEVNPNNT 164

Query:   135 RVHTVTY-RTHLYEADHLMSSYRYEKYCLPP--HVHLKGNTRCKLVLNELPDDVYNREWD 191
             R++++ Y +  +  A +L+   R    C P   + H +G++ CKL L +LP  V+N +WD
Sbjct:   165 RIYSLKYHQMEVRNAYNLLQHARANPACAPNMNNQH-QGSSDCKLELRDLPQQVHNTKWD 223

Query:   192 VIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRK 251
             VI +DGPRG   E PGRM +I+TAAV+AR   S   T VF+HDV R  EK  + EFLC++
Sbjct:   224 VIVVDGPRGDDLETPGRMGSIYTAAVLARKGSSNSTTDVFVHDVHRTAEKWLSWEFLCQE 283

Query:   252 YFVKVVGKLWHFRI 265
               V   G  W FRI
Sbjct:   284 NLVSAKGTFWKFRI 297


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.140   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      284       270   0.00097  114 3  11 22  0.41    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  207 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.60u 0.10s 21.70t   Elapsed:  00:00:01
  Total cpu time:  21.60u 0.10s 21.70t   Elapsed:  00:00:01
  Start:  Tue May 21 05:52:32 2013   End:  Tue May 21 05:52:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
TIGR01627	225	TIGR01627, A_thal_3515, uncharacterized plant-spec	3e-78
pfam04669	134	pfam04669, Polysacc_synt_4, Polysaccharide biosynt	2e-28

>gnl|CDD|130688 TIGR01627, A_thal_3515, uncharacterized plant-specific domain TIGR01627

 Score =  236 bits (604), Expect = 3e-78
 Identities = 94/207 (45%), Positives = 126/207 (60%), Gaps = 1/207 (0%)

Query: 60  AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
           A+ HY  S     L   E+++  D L   +PCN+LVFGL H  LMW+SLN RG T+F+EE
Sbjct: 10  ALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEE 69

Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLN 179
           +  ++       P  R+++V Y T +  A +L+   R    C P   H  G++ CKL L 
Sbjct: 70  EKIMIAKAEVNPPNTRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQ-GSSDCKLELR 128

Query: 180 ELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKV 239
           +LP  VYN +WDVI +DGPRG   E PGRM++I+TAAV+AR   S   T VF+HDV R V
Sbjct: 129 DLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGSTTDVFVHDVHRTV 188

Query: 240 EKAYAEEFLCRKYFVKVVGKLWHFRIP 266
           EK  + EFLC++  V+  G LWHFRI 
Sbjct: 189 EKWLSWEFLCQENLVEANGTLWHFRIK 215

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). Length = 225

>gnl|CDD|218202 pfam04669, Polysacc_synt_4, Polysaccharide biosynthesis

 Score =  105 bits (264), Expect = 2e-28
 Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 66/193 (34%)

Query: 77  EIRVPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALR 135
           E++    A+    P CNLLVFGLG  SL   +LN             +        P L 
Sbjct: 2   EMQWAVKAVEHAEPYCNLLVFGLGPSSLRLTALNDG-----------IYEKFRKAFPELE 50

Query: 136 VHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFI 195
            + V YRT + +AD L S+                               Y  +W  IF+
Sbjct: 51  AYHVAYRTKVLDADELKSAA------------------------------YKEKW-RIFV 79

Query: 196 DGPRGYYAEAPGRMATIFTAAVMARARKSRGVT---HVFLHDVDRKVEKAYAEEFLCRKY 252
           D P GY  +        + A  +AR+  S+G T    VF+H V          +FLC + 
Sbjct: 80  DAPEGYVED--------YNAGTLARSDASKGYTPENTVFVHRV----------QFLCIEI 121

Query: 253 FVKVVG--KLWHF 263
                G   L HF
Sbjct: 122 ARNREGLNDLVHF 134

This family of proteins plays a role in xylan biosynthesis in plant cell walls. Its precise role in xylan biosynthesis is unknown. Its function in other organisms is unknown. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
TIGR01627	225	A_thal_3515 uncharacterized plant-specific domain	100.0
PF04669	190	Polysacc_synt_4: Polysaccharide biosynthesis; Inte	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.73
PLN02823	336	spermine synthase	94.44
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	93.05
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	92.75
PLN02476	278	O-methyltransferase	92.58
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	92.58
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	91.24
PRK03612	521	spermidine synthase; Provisional	91.18
PRK00811	283	spermidine synthase; Provisional	90.61
PRK01581	374	speE spermidine synthase; Validated	90.1
PRK04457	262	spermidine synthase; Provisional	87.81
PLN02366	308	spermidine synthase	87.34
PLN02589	247	caffeoyl-CoA O-methyltransferase	82.5

>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627

Probab=100.00  E-value=1.7e-120  Score=814.55  Aligned_cols=218  Identities=43%  Similarity=0.730  Sum_probs=211.3

Q ss_pred             cHHHHHHHHHHhhcCCCCCCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCC
Q 048818           54 MQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPA  133 (284)
Q Consensus        54 ~~~~~~AlvHYAtsn~tpqqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~  133 (284)
                      ++..++|||||||||+|||||.+||+++++||++||||||||||||||||||+||||||||||||||++||+++++++|+
T Consensus         4 p~~~a~AlvhYatsn~t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~~~~p~   83 (225)
T TIGR01627         4 PLSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVNPPN   83 (225)
T ss_pred             chhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHhhcCCc
Confidence            44558999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHh
Q 048818          134 LRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIF  213 (284)
Q Consensus       134 leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIy  213 (284)
                      ||+|+|+|+|+++||++||+++|++|+|+|+|+.++ +|+|||||||||+||||++|||||||||+||+|||||||+|||
T Consensus        84 leay~V~Y~t~~~~a~~LL~~~~~~~~C~p~~~~~~-~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~aIy  162 (225)
T TIGR01627        84 TRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQG-SSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIY  162 (225)
T ss_pred             ceEEEEEeehhhhhHHHHHHHhccCCcccCCCCccc-cCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhhHH
Confidence            999999999999999999999998899999998665 8999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcCCCceeEEEecCChHHHHHHHHhhccccchhhcccceeeEEeCCCCCCC
Q 048818          214 TAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAI  272 (284)
Q Consensus       214 TAavmAR~r~~gg~TdVfVHDvdR~VE~~~s~eFLC~~nlv~~~grL~HF~Ip~~~~~~  272 (284)
                      |||||||+|++||+||||||||||+|||+||+||||++|||+++||||||+||++++.+
T Consensus       163 TAav~AR~r~~g~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~  221 (225)
T TIGR01627       163 TAAVLARKGSSGSTTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNAS  221 (225)
T ss_pred             HHHHHHHhccCCCCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCC
Confidence            99999999998778999999999999999999999999999999999999999998754

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).

>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins

Probab=100.00  E-value=1.2e-87  Score=592.03  Aligned_cols=185  Identities=52%  Similarity=0.898  Sum_probs=106.7

Q ss_pred             hhhhcHHHHhccCCC-CcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCCceeEEEeeecccccHHHHHHH
Q 048818           76 PEIRVPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSS  154 (284)
Q Consensus        76 ~Ei~~~~~vL~~raP-CNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~leay~V~Y~T~~~ea~~LL~~  154 (284)
                      .||+.++++|++++| |||||||||||||||+++||||||||||||++|++++++++|++++|+|+|+|++.++++||+.
T Consensus         1 ~E~~~a~~~l~~~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~~   80 (190)
T PF04669_consen    1 IEIAWAAKVLQHREPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLSK   80 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSSH
T ss_pred             CcHHHHHHHHHHhCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhCc
Confidence            599999999999998 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhcCCCce--eEEE
Q 048818          155 YRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVT--HVFL  232 (284)
Q Consensus       155 ~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~gg~T--dVfV  232 (284)
                      +|+ ++|+|+|+..  +|+|||||||||++||+++|||||||||+||+|+|||||+||||||||||+|+.++.|  ||||
T Consensus        81 ~~~-~~C~~~~~~~--~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~VfV  157 (190)
T PF04669_consen   81 ARS-PECRPVQNLR--FSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVFV  157 (190)
T ss_dssp             H------------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEEE
T ss_pred             ccc-cccccccccc--ccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEEE
Confidence            998 9999999963  9999999999999999999999999999999999999999999999999999987655  9999


Q ss_pred             ecCChHHHHHHHHhhccccchhhcccc--eeeE
Q 048818          233 HDVDRKVEKAYAEEFLCRKYFVKVVGK--LWHF  263 (284)
Q Consensus       233 HDvdR~VE~~~s~eFLC~~nlv~~~gr--L~HF  263 (284)
                      |||||+|||+||+||||.+|+++++|+  ||||
T Consensus       158 hdv~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF  190 (190)
T PF04669_consen  158 HDVDRPVEKWFSEEFLCIEILRNREGRNDLWHF  190 (190)
T ss_dssp             -HH----------HHHHHHHHHHHTTTTGGG--
T ss_pred             EcccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence            999999999999999999999999999  9999

; PDB: 2JYN_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.73  E-value=0.27  Score=46.33  Aligned_cols=156  Identities=18%  Similarity=0.277  Sum_probs=114.0

Q ss_pred             hhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCce--eEEEeeecccccHHHHH
Q 048818           77 EIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALR--VHTVTYRTHLYEADHLM  152 (284)
Q Consensus        77 Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~le--ay~V~Y~T~~~ea~~LL  152 (284)
                      |.-+-...+.+-.|=+.||-|+|--+.++..+.|.  -+-+..|=|+..|+-.++-.|...  +++=+-.-.+.|+.+.|
T Consensus        64 Eml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v  143 (282)
T COG0421          64 EMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL  143 (282)
T ss_pred             HHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence            44455555666667799999999999999999998  699999999999999998877765  44444445557777777


Q ss_pred             HHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhh---cCCC--c
Q 048818          153 SSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARAR---KSRG--V  227 (284)
Q Consensus       153 ~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~gg--~  227 (284)
                      +.      |                    +     -++|||++|.--   |+.||  .+.||.-..--.+   +.+|  .
T Consensus       144 ~~------~--------------------~-----~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi~v  187 (282)
T COG0421         144 RD------C--------------------E-----EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGIFV  187 (282)
T ss_pred             Hh------C--------------------C-----CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcEEE
Confidence            71      1                    1     168999999766   44444  4566665544333   3333  1


Q ss_pred             e---eEEEe-----cCChHHHHHHHHhhccccchhhcccceeeEEeCCC
Q 048818          228 T---HVFLH-----DVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPG  268 (284)
Q Consensus       228 T---dVfVH-----DvdR~VE~~~s~eFLC~~nlv~~~grL~HF~Ip~~  268 (284)
                      +   +-|.|     +.-|.++++|+..=...-.+-.-.+..|-|.+.+.
T Consensus       188 ~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~  236 (282)
T COG0421         188 AQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF  236 (282)
T ss_pred             EecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence            2   25666     58899999999888888888888888999999663

>PLN02823 spermine synthase

Probab=94.44  E-value=0.38  Score=46.20  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=67.1

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCce-eE-EEeeecccccHHHHHHHcccCC
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALR-VH-TVTYRTHLYEADHLMSSYRYEK  159 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~le-ay-~V~Y~T~~~ea~~LL~~~r~~~  159 (284)
                      .+....|-+.||.|+|--++....+.|.  .+-+.+|=|+.-++-.++-.|... ++ +=+-+-...|+.+.|+..    
T Consensus        98 l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~----  173 (336)
T PLN02823         98 LLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR----  173 (336)
T ss_pred             HhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC----
Confidence            3444579999999999888877777764  467899999999999888766321 11 112223345666655410    


Q ss_pred             CCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHH
Q 048818          160 YCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMA  219 (284)
Q Consensus       160 ~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmA  219 (284)
                                                 +-++|||++|.+.   |...|-....||.-.+.
T Consensus       174 ---------------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~  203 (336)
T PLN02823        174 ---------------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE  203 (336)
T ss_pred             ---------------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence                                       1259999999875   43333345688876554

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=93.05  E-value=0.37  Score=43.29  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhhcC--CCCCC--ChhhhhcHHHHhccCCCCcEEEecc--Cchhhhhhh-cCCCCceeEeccChhHHHHH
Q 048818           55 QTQLLAIIHYATSR--DIPQL--TLPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWAS-LNPRGTTIFLEEDSKLVHTI  127 (284)
Q Consensus        55 ~~~~~AlvHYAtsn--~tpqq--t~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~a-LN~gGrTvFLEEd~~~i~~v  127 (284)
                      +..++.+.+||-.+  ..++|  +.++-+.+..+++...|=++|-.|-  |..++.+++ +..+|+-+.+|-|+++++..
T Consensus        30 ~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A  109 (234)
T PLN02781         30 HELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG  109 (234)
T ss_pred             CHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence            34567777887755  33543  4444444444444455889999985  555565554 44579999999999999887


Q ss_pred             hhhC--CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCC
Q 048818          128 LARA--PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRG  200 (284)
Q Consensus       128 ~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~G  200 (284)
                      ++..  .+++ ..|  +-...+|.+.|..+..+++                          +-.+|+|++|++++
T Consensus       110 ~~n~~~~gl~-~~i--~~~~gda~~~L~~l~~~~~--------------------------~~~fD~VfiDa~k~  155 (234)
T PLN02781        110 LEFIKKAGVD-HKI--NFIQSDALSALDQLLNNDP--------------------------KPEFDFAFVDADKP  155 (234)
T ss_pred             HHHHHHcCCC-CcE--EEEEccHHHHHHHHHhCCC--------------------------CCCCCEEEECCCHH
Confidence            7643  2333 233  3345677777764432210                          12689999999873

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=92.75  E-value=0.4  Score=42.85  Aligned_cols=120  Identities=17%  Similarity=0.217  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhhcCC-CCCCC--hhhhhcHHHHhccCCCCcEEEecc--Cchhhhhh-hcCCCCceeEeccChhHHHHHh
Q 048818           55 QTQLLAIIHYATSRD-IPQLT--LPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWA-SLNPRGTTIFLEEDSKLVHTIL  128 (284)
Q Consensus        55 ~~~~~AlvHYAtsn~-tpqqt--~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~  128 (284)
                      +..++.|-+++..+. .++|+  ..+-+.+...++..-|-|.|-+|-  |.-++.|+ ++-.+|+-+=+|-|+++++..+
T Consensus         8 ~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~   87 (205)
T PF01596_consen    8 PELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR   87 (205)
T ss_dssp             THHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH
Confidence            444777888888765 55553  345555555555577999999975  77777777 5667899999999999988776


Q ss_pred             hhC--CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCC
Q 048818          129 ARA--PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYA  203 (284)
Q Consensus       129 ~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~p  203 (284)
                      +..  -+++ ..|++  ...+|.+.|..+..+..                          +-.+|+|.|||.++-++
T Consensus        88 ~~~~~ag~~-~~I~~--~~gda~~~l~~l~~~~~--------------------------~~~fD~VFiDa~K~~y~  135 (205)
T PF01596_consen   88 ENFRKAGLD-DRIEV--IEGDALEVLPELANDGE--------------------------EGQFDFVFIDADKRNYL  135 (205)
T ss_dssp             HHHHHTTGG-GGEEE--EES-HHHHHHHHHHTTT--------------------------TTSEEEEEEESTGGGHH
T ss_pred             HHHHhcCCC-CcEEE--EEeccHhhHHHHHhccC--------------------------CCceeEEEEcccccchh
Confidence            522  2332 23333  34778887775442211                          23689999999886544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=92.58  E-value=0.49  Score=44.63  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=72.0

Q ss_pred             HHHHHHHhhcCCCC--CCChhhhhcHHHHhccCCCCcEEEecc--Cchhhhhh-hcCCCCceeEeccChhHHHHHhhhC-
Q 048818           58 LLAIIHYATSRDIP--QLTLPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWA-SLNPRGTTIFLEEDSKLVHTILARA-  131 (284)
Q Consensus        58 ~~AlvHYAtsn~tp--qqt~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~~~~-  131 (284)
                      ++.|.+|+..+.-+  +.+.++-+.+..+++...|=++|=.|-  |.-++.++ ++..+|+-+=+|-|+++++..++.. 
T Consensus        85 L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~  164 (278)
T PLN02476         85 LRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE  164 (278)
T ss_pred             HHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence            44555565554223  345555566666666677889999976  44444333 3456899999999999988776543 


Q ss_pred             -CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCC
Q 048818          132 -PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGY  201 (284)
Q Consensus       132 -p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy  201 (284)
                       -+++ +.|+.  ...+|.+.|..+..+.                          .+-.+|+|+|||+++-
T Consensus       165 ~aGl~-~~I~l--i~GdA~e~L~~l~~~~--------------------------~~~~FD~VFIDa~K~~  206 (278)
T PLN02476        165 LAGVS-HKVNV--KHGLAAESLKSMIQNG--------------------------EGSSYDFAFVDADKRM  206 (278)
T ss_pred             HcCCC-CcEEE--EEcCHHHHHHHHHhcc--------------------------cCCCCCEEEECCCHHH
Confidence             3444 34433  3467777776443110                          0134899999999853

>TIGR00417 speE spermidine synthase

Probab=92.58  E-value=1.7  Score=39.61  Aligned_cols=51  Identities=20%  Similarity=0.322  Sum_probs=40.1

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCc
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPAL  134 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~l  134 (284)
                      .+....|-+.|+.|.|--.+....+.++  .+.+.+|-|+..++..++..|.+
T Consensus        67 l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~  119 (270)
T TIGR00417        67 LFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL  119 (270)
T ss_pred             hhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence            3445567899999999988877777775  57889999999999888765543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=91.24  E-value=0.57  Score=42.61  Aligned_cols=106  Identities=18%  Similarity=0.285  Sum_probs=68.2

Q ss_pred             HHhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCceeE--EEeeecccccHHHHHHHcccC
Q 048818           83 DALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALRVH--TVTYRTHLYEADHLMSSYRYE  158 (284)
Q Consensus        83 ~vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~leay--~V~Y~T~~~ea~~LL~~~r~~  158 (284)
                      -++....|-|.||.|+|--+..-..+.|.  .+...+|-||.-++-.++-+|....-  +=+.+....||.+.|+..   
T Consensus        70 ~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~---  146 (246)
T PF01564_consen   70 PLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET---  146 (246)
T ss_dssp             HHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS---
T ss_pred             HhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc---
Confidence            34445579999999999999998888886  67889999999888777644432110  011122346777777621   


Q ss_pred             CCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc
Q 048818          159 KYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK  223 (284)
Q Consensus       159 ~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~  223 (284)
                                             +++    ++|||++|.+.   |..|+-.  .||.-.....++
T Consensus       147 -----------------------~~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~~~  179 (246)
T PF01564_consen  147 -----------------------QEE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLCKR  179 (246)
T ss_dssp             -----------------------SST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHHHH
T ss_pred             -----------------------cCC----cccEEEEeCCC---CCCCccc--ccCHHHHHHHHh
Confidence                                   122    69999999988   4444433  777766655543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK03612 spermidine synthase; Provisional

Probab=91.18  E-value=1.2  Score=44.69  Aligned_cols=146  Identities=17%  Similarity=0.250  Sum_probs=82.6

Q ss_pred             cCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhh--hCCCcee--EE-EeeecccccHHHHHHHcccCC
Q 048818           87 GLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILA--RAPALRV--HT-VTYRTHLYEADHLMSSYRYEK  159 (284)
Q Consensus        87 ~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~--~~p~lea--y~-V~Y~T~~~ea~~LL~~~r~~~  159 (284)
                      .+.|-+.|+.|.|--...-..+.|+  .+-+.+|=|++-++..++  ..|++..  ++ =+.+-...|+.+.++.     
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-----  369 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-----  369 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence            3568999999999888776667775  489999999999998887  3333321  11 0111123455554431     


Q ss_pred             CCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhh---cCCCceeEE-----
Q 048818          160 YCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARAR---KSRGVTHVF-----  231 (284)
Q Consensus       160 ~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~gg~TdVf-----  231 (284)
                                           .+     -++|+|++|.|.-+.   |+ ....||.......+   |+|| .=|.     
T Consensus       370 ---------------------~~-----~~fDvIi~D~~~~~~---~~-~~~L~t~ef~~~~~~~L~pgG-~lv~~~~~~  418 (521)
T PRK03612        370 ---------------------LA-----EKFDVIIVDLPDPSN---PA-LGKLYSVEFYRLLKRRLAPDG-LLVVQSTSP  418 (521)
T ss_pred             ---------------------CC-----CCCCEEEEeCCCCCC---cc-hhccchHHHHHHHHHhcCCCe-EEEEecCCc
Confidence                                 11     158999999876332   22 13355554443333   2433 2121     


Q ss_pred             Eec--CChHHHHHHHHh-hccccch--hhcccceeeEEeCCCC
Q 048818          232 LHD--VDRKVEKAYAEE-FLCRKYF--VKVVGKLWHFRIPPGA  269 (284)
Q Consensus       232 VHD--vdR~VE~~~s~e-FLC~~nl--v~~~grL~HF~Ip~~~  269 (284)
                      .|+  .-.++.+...+. |-+..|.  +.+-| .|.|.+-+.+
T Consensus       419 ~~~~~~~~~i~~~l~~~gf~v~~~~~~vps~g-~w~f~~as~~  460 (521)
T PRK03612        419 YFAPKAFWSIEATLEAAGLATTPYHVNVPSFG-EWGFVLAGAG  460 (521)
T ss_pred             ccchHHHHHHHHHHHHcCCEEEEEEeCCCCcc-hhHHHeeeCC
Confidence            122  123456666666 5333332  23445 8889886543

>PRK00811 spermidine synthase; Provisional

Probab=90.61  E-value=2.4  Score=39.15  Aligned_cols=51  Identities=18%  Similarity=0.279  Sum_probs=40.8

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCC-C-CceeEeccChhHHHHHhhhCCCc
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNP-R-GTTIFLEEDSKLVHTILARAPAL  134 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~-g-GrTvFLEEd~~~i~~v~~~~p~l  134 (284)
                      .+....|-+.||.|.|--+..-..+.+ + .+-+.+|=|+.-++..++..|.+
T Consensus        71 ~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~  123 (283)
T PRK00811         71 LFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI  123 (283)
T ss_pred             HhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence            344456899999999999888877887 3 47799999999999888866643

>PRK01581 speE spermidine synthase; Validated

Probab=90.10  E-value=2.7  Score=41.70  Aligned_cols=147  Identities=20%  Similarity=0.276  Sum_probs=87.2

Q ss_pred             ccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCce-----eE-EEeeecccccHHHHHHHccc
Q 048818           86 LGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALR-----VH-TVTYRTHLYEADHLMSSYRY  157 (284)
Q Consensus        86 ~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~le-----ay-~V~Y~T~~~ea~~LL~~~r~  157 (284)
                      ....|=+.||.|.|--..+=..+.|.  ++-+-+|=|+.-++-.++ +|.+.     ++ +=+-+-.+.||.+.|..   
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~---  222 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSS---  222 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHh---
Confidence            34558899999999777666666654  688889999999888775 44432     11 11222234555555541   


Q ss_pred             CCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc---CCCc--e----
Q 048818          158 EKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK---SRGV--T----  228 (284)
Q Consensus       158 ~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~---~gg~--T----  228 (284)
                                             .     +-++|||++|.|....+    .....||...+...++   +||.  +    
T Consensus       223 -----------------------~-----~~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s  270 (374)
T PRK01581        223 -----------------------P-----SSLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTEDGAFVCQSNS  270 (374)
T ss_pred             -----------------------c-----CCCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence                                   0     12599999998763322    2477888776665543   4442  0    


Q ss_pred             eEEEecCChHHHHHHHHhhccccchh---hcccceeeEEeCCC
Q 048818          229 HVFLHDVDRKVEKAYAEEFLCRKYFV---KVVGKLWHFRIPPG  268 (284)
Q Consensus       229 dVfVHDvdR~VE~~~s~eFLC~~nlv---~~~grL~HF~Ip~~  268 (284)
                      -.+-.++-..+-+.+.+.|+--....   .+-|-+|=|.|.+.
T Consensus       271 p~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~  313 (374)
T PRK01581        271 PADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN  313 (374)
T ss_pred             hhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence            00111222335666677777554332   23466799998654

>PRK04457 spermidine synthase; Provisional

Probab=87.81  E-value=11  Score=34.68  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=36.5

Q ss_pred             CCCCcEEEeccCchhhh--hhhcCCCCceeEeccChhHHHHHhhhC
Q 048818           88 LAPCNLLVFGLGHDSLM--WASLNPRGTTIFLEEDSKLVHTILARA  131 (284)
Q Consensus        88 raPCNfLVFGLg~dslm--W~aLN~gGrTvFLEEd~~~i~~v~~~~  131 (284)
                      ..|-+.|+.|+|.-++.  |+...++++-+-+|-||..++..++.+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f  110 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF  110 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence            34788999999888764  667778889999999999999888764

>PLN02366 spermidine synthase

Probab=87.34  E-value=4.4  Score=38.50  Aligned_cols=148  Identities=18%  Similarity=0.236  Sum_probs=84.6

Q ss_pred             cCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCcee-E-EEeeecccccHHHHHHHcccCCCCC
Q 048818           87 GLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALRV-H-TVTYRTHLYEADHLMSSYRYEKYCL  162 (284)
Q Consensus        87 ~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~lea-y-~V~Y~T~~~ea~~LL~~~r~~~~C~  162 (284)
                      ...|=+.||.|.|.-.+.-..+.|.  .+-+-+|=|+.-|+-.++.+|.+.. + +=+.+-...+|.+.|+         
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~---------  159 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK---------  159 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh---------
Confidence            3458899999999887776666664  3667889899998888877665310 0 0011222244444443         


Q ss_pred             CCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc---CCCc--e---eEEEe-
Q 048818          163 PPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK---SRGV--T---HVFLH-  233 (284)
Q Consensus       163 p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~---~gg~--T---dVfVH-  233 (284)
                                       +.|    +-++|||++|++....|  +   ...||...+...++   +||.  +   ..+.| 
T Consensus       160 -----------------~~~----~~~yDvIi~D~~dp~~~--~---~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~  213 (308)
T PLN02366        160 -----------------NAP----EGTYDAIIVDSSDPVGP--A---QELFEKPFFESVARALRPGGVVCTQAESMWLHM  213 (308)
T ss_pred             -----------------hcc----CCCCCEEEEcCCCCCCc--h---hhhhHHHHHHHHHHhcCCCcEEEECcCCcccch
Confidence                             222    12599999999886544  1   33566555544432   4442  1   22332 


Q ss_pred             cCChHHHHHHHHhhc--cccch--hh-cccceeeEEeCCCC
Q 048818          234 DVDRKVEKAYAEEFL--CRKYF--VK-VVGKLWHFRIPPGA  269 (284)
Q Consensus       234 DvdR~VE~~~s~eFL--C~~nl--v~-~~grL~HF~Ip~~~  269 (284)
                      +.-+.+-+.+...|-  ..-|.  |- -.|-.|-|.+.+..
T Consensus       214 ~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~  254 (308)
T PLN02366        214 DLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE  254 (308)
T ss_pred             HHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence            333456666777771  22111  11 22457999996654

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=82.50  E-value=5.8  Score=36.69  Aligned_cols=119  Identities=15%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             HHHHHHHHhhcCCCCCC--ChhhhhcHHHHhccCCCCcEEEecc--Cchhhhhh-hcCCCCceeEeccChhHHHHHhhhC
Q 048818           57 QLLAIIHYATSRDIPQL--TLPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWA-SLNPRGTTIFLEEDSKLVHTILARA  131 (284)
Q Consensus        57 ~~~AlvHYAtsn~tpqq--t~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~~~~  131 (284)
                      .++.+.++|..+..|.|  +.++-+.+..+++...|=+.|-.|-  |.-++.++ ++..+|+-+=+|=|+++++..++..
T Consensus        45 ~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~  124 (247)
T PLN02589         45 SMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI  124 (247)
T ss_pred             HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence            46777888887655644  4666677777776677999999985  55555443 3456899999999999987666432


Q ss_pred             --CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCC
Q 048818          132 --PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYA  203 (284)
Q Consensus       132 --p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~p  203 (284)
                        -++. ..|.+  ...+|.+.|..+..+.                         -|+-.+|+|.|||-++-++
T Consensus       125 ~~ag~~-~~I~~--~~G~a~e~L~~l~~~~-------------------------~~~~~fD~iFiDadK~~Y~  170 (247)
T PLN02589        125 QKAGVA-HKIDF--REGPALPVLDQMIEDG-------------------------KYHGTFDFIFVDADKDNYI  170 (247)
T ss_pred             HHCCCC-CceEE--EeccHHHHHHHHHhcc-------------------------ccCCcccEEEecCCHHHhH
Confidence              2332 45544  3457777776443210                         1234599999999876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 56/332 (16%), Positives = 92/332 (27%), Gaps = 102/332 (30%)

Query: 1   MKPPNRRFVVERP-LILGALLTF--AVTAAFLITGLSRTMKASIPRIYAIDSTPAAMQTQ 57
           +   +    V     +   LL+    +   F+   L    K  +  I      P+ M   
Sbjct: 55  IMSKDA---VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 58  LLAIIHYATSRD--------IPQLTLP------EIRVPFDALLGLAPC-NLLVFGLG--- 99
                 Y   RD          +  +       ++R    ALL L P  N+L+ G+    
Sbjct: 112 ------YIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSG 162

Query: 100 ------------------HDSLMWASL-NPRGTTIFLEEDSKLVHTILARAPALRVHTVT 140
                                + W +L N       LE   KL++ I     +   H+  
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 141 YRTHLYEAD----HLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNRE-WDVIFI 195
            +  ++        L+ S  YE  CL             LVL     +V N + W+  F 
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYEN-CL-------------LVL----LNVQNAKAWNA-FN 263

Query: 196 DGPRGYYAEAPGRMATIFT---AAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKY 252
              +            + T     V      +   TH+ L      +     +  L  KY
Sbjct: 264 LSCK-----------ILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKY 310

Query: 253 FVKVVGKLWHFRIPPGAYAI-PGKGQRGISVF 283
                  L     P       P    R +S+ 
Sbjct: 311 LDCRPQDL-----PREVLTTNP----RRLSII 333

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 9/32 (28%)

Query: 35 RTMKASIPRIYAIDSTPAAMQTQLLAIIHYAT 66
          + ++AS+ ++YA DS PA      LAI   AT
Sbjct: 23 KKLQASL-KLYADDSAPA------LAI--KAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.5
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	92.83
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	90.9
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	89.75
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	86.92
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	83.64
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	83.29
2i7c_A	283	Spermidine synthase; transferase, structural genom	82.55

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.50  E-value=0.003  Score=54.99  Aligned_cols=164  Identities=19%  Similarity=0.191  Sum_probs=91.2

Q ss_pred             CCCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCC--Cc-eeEEEeeeccccc
Q 048818           71 PQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAP--AL-RVHTVTYRTHLYE  147 (284)
Q Consensus        71 pqqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p--~l-eay~V~Y~T~~~e  147 (284)
                      +.++.++.+.+...++  .|-|.|-+|-|. |-+|.|...+|+-+=+|-|++|++.+++..-  ++ +...|.+..  .+
T Consensus        14 ~~v~~~~~~~L~~~l~--~a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--gd   88 (202)
T 3cvo_A           14 LTMPPAEAEALRMAYE--EAEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--TD   88 (202)
T ss_dssp             CCSCHHHHHHHHHHHH--HCSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--CC
T ss_pred             ccCCHHHHHHHHHHhh--CCCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--eC
Confidence            3578888888877554  578999999997 6666665558999999999999998875321  11 123343331  11


Q ss_pred             HHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhh--c--ccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc
Q 048818          148 ADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVY--N--REWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK  223 (284)
Q Consensus       148 a~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evY--e--~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~  223 (284)
                      |.+.+      .-..|... -.     .-.+..++..+.  +  -..|+|+|||.++        ....+-  .+-+-| 
T Consensus        89 a~~~~------~wg~p~~~-~~-----~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~-  145 (202)
T 3cvo_A           89 IGPTG------DWGHPVSD-AK-----WRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSIT-  145 (202)
T ss_dssp             CSSBC------GGGCBSSS-TT-----GGGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCS-
T ss_pred             chhhh------cccccccc-hh-----hhhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcC-
Confidence            11000      01122111 00     011112222221  1  4599999999753        233333  233333 


Q ss_pred             CCCceeEEEecC-ChHHHHHHHHhhccccchhhcccceeeEEeCCC
Q 048818          224 SRGVTHVFLHDV-DRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPG  268 (284)
Q Consensus       224 ~gg~TdVfVHDv-dR~VE~~~s~eFLC~~nlv~~~grL~HF~Ip~~  268 (284)
                      .|  .=++++|| .|.-+.. .++||   .+++..||+-.|++.+.
T Consensus       146 ~G--G~Iv~DNv~~r~~y~~-v~~~~---~~~~~~~~~a~f~~~p~  185 (202)
T 3cvo_A          146 RP--VTLLFDDYSQRRWQHQ-VEEFL---GAPLMIGRLAAFQVEPQ  185 (202)
T ss_dssp             SC--EEEEETTGGGCSSGGG-GHHHH---CCCEEETTEEEEEECCC
T ss_pred             CC--eEEEEeCCcCCcchHH-HHHHH---hHHhhcCceEEEEeCCC
Confidence            32  34577885 5532211 12333   35688999999999554

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=92.83  E-value=0.32  Score=46.41  Aligned_cols=152  Identities=16%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             CCCcEEEeccCchhhhhhhcCCCC-ceeEeccChhHHHHHhhhCCCcee--EE----EeeecccccHHHHHHHcccCCCC
Q 048818           89 APCNLLVFGLGHDSLMWASLNPRG-TTIFLEEDSKLVHTILARAPALRV--HT----VTYRTHLYEADHLMSSYRYEKYC  161 (284)
Q Consensus        89 aPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~p~lea--y~----V~Y~T~~~ea~~LL~~~r~~~~C  161 (284)
                      .|=|.||.|+|--..+-..+.|.. +..-+|-||.-|+-.++-.|.+-.  ++    =+.+.-..||.+-|+.+.++   
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~---  281 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE---  281 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc---
Confidence            477999999999999988888754 677899999999988887775422  11    11333456777777643210   


Q ss_pred             CCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCch-hhHhhHHHHHHhhc---CCCc--e---eEEE
Q 048818          162 LPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRM-ATIFTAAVMARARK---SRGV--T---HVFL  232 (284)
Q Consensus       162 ~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM-~aIyTAavmAR~r~---~gg~--T---dVfV  232 (284)
                                               ..++|||++|.+.+.....|-.. ...||.-.+...++   .+|.  |   -++.
T Consensus       282 -------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~  336 (381)
T 3c6k_A          282 -------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL  336 (381)
T ss_dssp             -------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC
T ss_pred             -------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence                                     12599999998876554555444 46788766554433   3331  1   1234


Q ss_pred             ecCChHHHHHHHHhhcccc---ch--hhcccceeeEEeCCC
Q 048818          233 HDVDRKVEKAYAEEFLCRK---YF--VKVVGKLWHFRIPPG  268 (284)
Q Consensus       233 HDvdR~VE~~~s~eFLC~~---nl--v~~~grL~HF~Ip~~  268 (284)
                      ++..+.+++.+.+.|---+   +.  |-+-+..|=|.+-+.
T Consensus       337 ~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK  377 (381)
T 3c6k_A          337 TEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWK  377 (381)
T ss_dssp             HHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred             hhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEEC
Confidence            6666777777777652111   11  223334687777443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=89.75  E-value=0.85  Score=37.40  Aligned_cols=77  Identities=17%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             cHHHHHHHHHHhhcCCC-CCCChhhhhcHHHHhccCCCCcEEEeccCc--hhhhhhh-cCCCCceeEeccChhHHHHHhh
Q 048818           54 MQTQLLAIIHYATSRDI-PQLTLPEIRVPFDALLGLAPCNLLVFGLGH--DSLMWAS-LNPRGTTIFLEEDSKLVHTILA  129 (284)
Q Consensus        54 ~~~~~~AlvHYAtsn~t-pqqt~~Ei~~~~~vL~~raPCNfLVFGLg~--dslmW~a-LN~gGrTvFLEEd~~~i~~v~~  129 (284)
                      ++.-++++-+|+..+.. .+.+...-+.+..+++...|.++|=.|-|.  -++.++. ++++|+-+-+|-++..++.+++
T Consensus        22 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  101 (221)
T 3u81_A           22 PQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ  101 (221)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH
Confidence            33457888899886544 466666667777777777899999997755  4454544 4568899999999999988876


Q ss_pred             h
Q 048818          130 R  130 (284)
Q Consensus       130 ~  130 (284)
                      +
T Consensus       102 ~  102 (221)
T 3u81_A          102 M  102 (221)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=86.92  E-value=1.2  Score=40.95  Aligned_cols=121  Identities=17%  Similarity=0.165  Sum_probs=71.1

Q ss_pred             CCcEEEeccCchhhhhhhc--CCCCceeEeccChhHHHHHhhhCCCceeEEEeeecccccHHHHHHHcccCCCCCCCccC
Q 048818           90 PCNLLVFGLGHDSLMWASL--NPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVH  167 (284)
Q Consensus        90 PCNfLVFGLg~dslmW~aL--N~gGrTvFLEEd~~~i~~v~~~~p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~  167 (284)
                      |.+.|+.|.|--++.-..+  .++.+.+-+|=|+..++..++.++....-.|  +-...++.+.++              
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv--~v~~~Da~~~l~--------------  153 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRV--KIRVDDARMVAE--------------  153 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTE--EEEESCHHHHHH--------------
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCce--EEEECcHHHHHh--------------
Confidence            5599999999877665544  4677888999999999999988764211111  112355555554              


Q ss_pred             CCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhh---cCCCceeEEEec-CC----hHH
Q 048818          168 LKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARAR---KSRGVTHVFLHD-VD----RKV  239 (284)
Q Consensus       168 lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~gg~TdVfVHD-vd----R~V  239 (284)
                                  .+|    +-.+|+|++|.+.+..+  |   ...||...+...+   +.||.-=+-+.+ -+    +.+
T Consensus       154 ------------~~~----~~~fDvIi~D~~~~~~~--~---~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~  212 (317)
T 3gjy_A          154 ------------SFT----PASRDVIIRDVFAGAIT--P---QNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSE  212 (317)
T ss_dssp             ------------TCC----TTCEEEEEECCSTTSCC--C---GGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHH
T ss_pred             ------------hcc----CCCCCEEEECCCCcccc--c---hhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHH
Confidence                        111    23689999998876532  3   3345555444443   344532122221 12    345


Q ss_pred             HHHHHHhh
Q 048818          240 EKAYAEEF  247 (284)
Q Consensus       240 E~~~s~eF  247 (284)
                      .+.+.+.|
T Consensus       213 ~~tL~~vF  220 (317)
T 3gjy_A          213 LAGMMEVF  220 (317)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHC
Confidence            55666666

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=83.64  E-value=8.3  Score=33.55  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             cCCCCcEEEeccCchhhhhhhcCC-C-CceeEeccChhHHHHHhhhCC
Q 048818           87 GLAPCNLLVFGLGHDSLMWASLNP-R-GTTIFLEEDSKLVHTILARAP  132 (284)
Q Consensus        87 ~raPCNfLVFGLg~dslmW~aLN~-g-GrTvFLEEd~~~i~~v~~~~p  132 (284)
                      ...|-+.|+.|.|--.+.-..+.+ + ++-+.+|-|+..++..++..+
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~  120 (275)
T 1iy9_A           73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (275)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence            346899999999988887777766 3 688999999999998887654

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=83.29  E-value=2.7  Score=38.49  Aligned_cols=49  Identities=16%  Similarity=0.206  Sum_probs=39.7

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCC
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAP  132 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p  132 (284)
                      .+....|=|.||.|+|-.+.+-..+.|.  -+.+.+|=||.-|+-.++-.|
T Consensus        78 l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp  128 (294)
T 3o4f_A           78 LLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP  128 (294)
T ss_dssp             HHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             HhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence            3445568899999999999998888874  377889999999987776554

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=82.55  E-value=5.1  Score=34.97  Aligned_cols=48  Identities=17%  Similarity=0.140  Sum_probs=38.8

Q ss_pred             ccCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCCC
Q 048818           86 LGLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAPA  133 (284)
Q Consensus        86 ~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p~  133 (284)
                      ....|-++|+.|.|.-.+.-..+.+  +++-+.+|=|+.-++..++..+.
T Consensus        75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~  124 (283)
T 2i7c_A           75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  124 (283)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            3456889999999988877766665  46889999999999998887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	92.35
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	91.43
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	89.42
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	88.77
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	87.55
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	87.15
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	86.16
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	80.82
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	80.6
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	80.36

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.35  E-value=0.16  Score=43.18  Aligned_cols=48  Identities=21%  Similarity=0.215  Sum_probs=38.6

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCCCC-ceeEeccChhHHHHHhhhC
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNPRG-TTIFLEEDSKLVHTILARA  131 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~  131 (284)
                      .+....|-|.||.|+|--+..+..+.|+. +...+|=||.-|+-.++-+
T Consensus        67 l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f  115 (276)
T d1mjfa_          67 MLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI  115 (276)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred             hhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhh
Confidence            34456799999999999999999998865 5567899999998776543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.43  E-value=0.28  Score=39.97  Aligned_cols=77  Identities=18%  Similarity=0.205  Sum_probs=57.4

Q ss_pred             CcHHHHHHHHHHhhcCCCC-CCChhhhhcHHHHhccCCCCcEEEec--cCchhhhhh-hcCCCCceeEeccChhHHHHHh
Q 048818           53 AMQTQLLAIIHYATSRDIP-QLTLPEIRVPFDALLGLAPCNLLVFG--LGHDSLMWA-SLNPRGTTIFLEEDSKLVHTIL  128 (284)
Q Consensus        53 ~~~~~~~AlvHYAtsn~tp-qqt~~Ei~~~~~vL~~raPCNfLVFG--Lg~dslmW~-aLN~gGrTvFLEEd~~~i~~v~  128 (284)
                      .+...++++=.||..+.-+ +.+.+.=+.+..+++..-|=++|-+|  .|..++.|+ ++..||+-+=+|=++++++..+
T Consensus        19 ~p~~vl~~~~~~~~~~~~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~   98 (214)
T d2cl5a1          19 DPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQ   98 (214)
T ss_dssp             CHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHH
Confidence            3445588888888865433 34555556778888888899999998  588777775 3567899999999999988765


Q ss_pred             h
Q 048818          129 A  129 (284)
Q Consensus       129 ~  129 (284)
                      +
T Consensus        99 ~   99 (214)
T d2cl5a1          99 Q   99 (214)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=89.42  E-value=1.1  Score=38.80  Aligned_cols=152  Identities=16%  Similarity=0.224  Sum_probs=86.7

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCcee--E-EEeeecccccHHHHHHHcccC
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALRV--H-TVTYRTHLYEADHLMSSYRYE  158 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~lea--y-~V~Y~T~~~ea~~LL~~~r~~  158 (284)
                      .+....|=|.||.|+|-.+.+...+.+.  .+-.-+|=||.-|+-.++-+|....  + +=+-+--..||.+.|+..   
T Consensus        72 l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~---  148 (312)
T d1uira_          72 MLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---  148 (312)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---
T ss_pred             hhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc---
Confidence            3445568899999999999988888764  4778899999998877764432100  0 000011245666666521   


Q ss_pred             CCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHH---HHHhhcCCCc--eeE--E
Q 048818          159 KYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAV---MARARKSRGV--THV--F  231 (284)
Q Consensus       159 ~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAav---mAR~r~~gg~--TdV--f  231 (284)
                                                  +.+||||++|.+.-+..+.|.  ...||--.   ++|.=+.||.  +.+  .
T Consensus       149 ----------------------------~~~yDvIi~D~~dp~~~~~~~--~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~  198 (312)
T d1uira_         149 ----------------------------EERYDVVIIDLTDPVGEDNPA--RLLYTVEFYRLVKAHLNPGGVMGMQTGMI  198 (312)
T ss_dssp             ----------------------------CCCEEEEEEECCCCBSTTCGG--GGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred             ----------------------------CCcccEEEEeCCCcccccchh--hhhhhHHHHHHHHHhcCCCceEEEecCCc
Confidence                                        346999999997644444333  22555433   3333334442  222  1


Q ss_pred             Ee---cCChHHHHHHHHhhccccc---hhhcccceeeEEeCCC
Q 048818          232 LH---DVDRKVEKAYAEEFLCRKY---FVKVVGKLWHFRIPPG  268 (284)
Q Consensus       232 VH---DvdR~VE~~~s~eFLC~~n---lv~~~grL~HF~Ip~~  268 (284)
                      ..   ++.+.+-+.+.+.|--=..   -|-+-|.-|.|.+-+.
T Consensus       199 ~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~  241 (312)
T d1uira_         199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASD  241 (312)
T ss_dssp             CC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred             ccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEeC
Confidence            11   2334566677777732111   1223355688998553

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.77  E-value=0.26  Score=42.44  Aligned_cols=145  Identities=14%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             ccCCCCcEEEeccCchhhhhhhcCCCC--ceeEeccChhHHHHHhhhCCCcee--EEEeeecccccHHHHHHHcccCCCC
Q 048818           86 LGLAPCNLLVFGLGHDSLMWASLNPRG--TTIFLEEDSKLVHTILARAPALRV--HTVTYRTHLYEADHLMSSYRYEKYC  161 (284)
Q Consensus        86 ~~raPCNfLVFGLg~dslmW~aLN~gG--rTvFLEEd~~~i~~v~~~~p~lea--y~V~Y~T~~~ea~~LL~~~r~~~~C  161 (284)
                      ....|=|.||.|+|-.+.+...+.|.+  +.+.+|=|+.-|+-.++-+|....  -+-+.+....||.+-++        
T Consensus        77 ~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~--------  148 (290)
T d1xj5a_          77 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK--------  148 (290)
T ss_dssp             TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH--------
T ss_pred             hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh--------
Confidence            345688999999999999999998853  788999999999887765542210  01111222345555554        


Q ss_pred             CCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhh---cCCCceeEEEe-----
Q 048818          162 LPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARAR---KSRGVTHVFLH-----  233 (284)
Q Consensus       162 ~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~gg~TdVfVH-----  233 (284)
                                        +.++    .++|||++|.+.++.   |.  ...||--....-+   +++|   |||-     
T Consensus       149 ------------------~~~~----~~yDvIi~D~~dp~~---~~--~~L~t~eF~~~~~~~L~~~G---i~v~q~~s~  198 (290)
T d1xj5a_         149 ------------------NAAE----GSYDAVIVDSSDPIG---PA--KELFEKPFFQSVARALRPGG---VVCTQAESL  198 (290)
T ss_dssp             ------------------TSCT----TCEEEEEECCCCTTS---GG--GGGGSHHHHHHHHHHEEEEE---EEEEECCCT
T ss_pred             ------------------hccc----cCccEEEEcCCCCCC---cc--hhhCCHHHHHHHHHhcCCCc---EEEEecCCc
Confidence                              2222    369999999998543   22  5678865443333   3433   2221     


Q ss_pred             ----cCChHHHHHHHHhhc-cccch---hhc-ccceeeEEeCCC
Q 048818          234 ----DVDRKVEKAYAEEFL-CRKYF---VKV-VGKLWHFRIPPG  268 (284)
Q Consensus       234 ----DvdR~VE~~~s~eFL-C~~nl---v~~-~grL~HF~Ip~~  268 (284)
                          +.-+.+-+.+.+.|- ...|.   |-. .+-.|=|.+.+.
T Consensus       199 ~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~  242 (290)
T d1xj5a_         199 WLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCST  242 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEEC
T ss_pred             HHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeC
Confidence                222456677778884 44443   222 245888988443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.55  E-value=0.57  Score=41.17  Aligned_cols=108  Identities=14%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             hhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCcee-E-EEeeecccccHHHHH
Q 048818           77 EIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALRV-H-TVTYRTHLYEADHLM  152 (284)
Q Consensus        77 Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~lea-y-~V~Y~T~~~ea~~LL  152 (284)
                      |.-+-.-.+....|=|.||.|+|--+.+...+.|.  .+...+|=|+.-|+-.++-.|.... + +=+.+-...||.+-|
T Consensus        94 E~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l  173 (312)
T d2b2ca1          94 EMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL  173 (312)
T ss_dssp             HHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH
T ss_pred             HHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHH
Confidence            33333344556678899999999999999999986  5899999999999888776654321 0 011122245666666


Q ss_pred             HHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHH
Q 048818          153 SSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMAR  220 (284)
Q Consensus       153 ~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR  220 (284)
                      +..                               +.+||||++|.+.+..|  |   ...||---...
T Consensus       174 ~~~-------------------------------~~~yDvII~D~~dp~~~--~---~~L~t~eFy~~  205 (312)
T d2b2ca1         174 KNH-------------------------------KNEFDVIITDSSDPVGP--A---ESLFGQSYYEL  205 (312)
T ss_dssp             HHC-------------------------------TTCEEEEEECCC------------------HHHH
T ss_pred             HhC-------------------------------CCCCCEEEEcCCCCCCc--c---hhhhhHHHHHH
Confidence            411                               23599999999875432  2   34666544333

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=87.15  E-value=2.2  Score=35.20  Aligned_cols=119  Identities=14%  Similarity=0.156  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhcCCCCCC--ChhhhhcHHHHhccCCCCcEEEecc--Cchhhhhh-hcCCCCceeEeccChhHHHHHhhh
Q 048818           56 TQLLAIIHYATSRDIPQL--TLPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWA-SLNPRGTTIFLEEDSKLVHTILAR  130 (284)
Q Consensus        56 ~~~~AlvHYAtsn~tpqq--t~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~~~  130 (284)
                      ..++.|..++..+.-|.|  +..+-+.+..+++..-|=+.|-.|-  |.-++.++ ++..+|+-+=+|-|+++++..++.
T Consensus        24 ~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~  103 (227)
T d1susa1          24 EAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPV  103 (227)
T ss_dssp             THHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHH
Confidence            346678888877766643  3444555666666667999999986  55555554 677799999999999998876643


Q ss_pred             C--CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCC
Q 048818          131 A--PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYY  202 (284)
Q Consensus       131 ~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~  202 (284)
                      .  .+++ .+|.  -...+|.+.|..+-.                         +...+-.+|+|+|||=++.+
T Consensus       104 ~~~~g~~-~~i~--~~~g~a~~~L~~l~~-------------------------~~~~~~~fD~iFiDa~k~~y  149 (227)
T d1susa1         104 IKKAGVD-HKID--FREGPALPVLDEMIK-------------------------DEKNHGSYDFIFVDADKDNY  149 (227)
T ss_dssp             HHHTTCG-GGEE--EEESCHHHHHHHHHH-------------------------CGGGTTCBSEEEECSCSTTH
T ss_pred             HHHhccc-ccee--eeehHHHHHHHHHHh-------------------------ccccCCceeEEEeccchhhh
Confidence            2  2222 1222  233566666653211                         11234569999999977554

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=1.6  Score=37.23  Aligned_cols=149  Identities=14%  Similarity=0.199  Sum_probs=80.3

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCcee-E-EEeeecccccHHHHHHHcccCC
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALRV-H-TVTYRTHLYEADHLMSSYRYEK  159 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~lea-y-~V~Y~T~~~ea~~LL~~~r~~~  159 (284)
                      .+....|=+.||.|+|-.+.+=..+.|.  -+.+-+|=||.-++-.++-+|.... + +=+.+....||.+.|+.     
T Consensus        73 l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-----  147 (285)
T d2o07a1          73 LCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-----  147 (285)
T ss_dssp             HTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-----
T ss_pred             hhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc-----
Confidence            3444568899999999998888888773  4778899999998887765442110 0 01112234677777761     


Q ss_pred             CCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHH---HHhhcCCCc--eeEEEec
Q 048818          160 YCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVM---ARARKSRGV--THVFLHD  234 (284)
Q Consensus       160 ~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavm---AR~r~~gg~--TdVfVHD  234 (284)
                       |                         +-++|||++|.+.+..+  |   ...||---.   .|.=+.+|.  +..-..+
T Consensus       148 -~-------------------------~~~yDvIi~D~~~p~~~--~---~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~  196 (285)
T d2o07a1         148 -N-------------------------QDAFDVIITDSSDPMGP--A---ESLFKESYYQLMKTALKEDGVLCCQGECQW  196 (285)
T ss_dssp             -C-------------------------SSCEEEEEEECC----------------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             -C-------------------------CCCCCEEEEcCCCCCCc--c---cccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence             0                         12699999999886543  2   456664333   333234442  2222223


Q ss_pred             CC----hHHHHHHHHhhccccc-h--hhc-ccceeeEEeCCC
Q 048818          235 VD----RKVEKAYAEEFLCRKY-F--VKV-VGKLWHFRIPPG  268 (284)
Q Consensus       235 vd----R~VE~~~s~eFLC~~n-l--v~~-~grL~HF~Ip~~  268 (284)
                      .+    +.+-+.+.+.|-=-.. .  +.. .|..|=|.+.+.
T Consensus       197 ~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk  238 (285)
T d2o07a1         197 LHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSK  238 (285)
T ss_dssp             TCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             hhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEEC
Confidence            33    3445556666642111 1  112 267888888554

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=80.82  E-value=1.1  Score=34.89  Aligned_cols=77  Identities=12%  Similarity=0.067  Sum_probs=51.4

Q ss_pred             ChhhhhcHHHHhccC--CCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCCceeEEEeeecccccHHHH
Q 048818           74 TLPEIRVPFDALLGL--APCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHL  151 (284)
Q Consensus        74 t~~Ei~~~~~vL~~r--aPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~leay~V~Y~T~~~ea~~L  151 (284)
                      |..--..+++.|+.+  ..+++|=.|=|.-.+--.++..|.+-+++|-|+..++.++++.-.   +.+.-+....+++..
T Consensus        24 ~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~---~~~~~~v~~~~~d~~  100 (171)
T d1ws6a1          24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRR---TGLGARVVALPVEVF  100 (171)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH---HTCCCEEECSCHHHH
T ss_pred             cHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHh---hccccceeeeehhcc
Confidence            333345677788763  367888777777677677888899999999999999988765221   122223344566665


Q ss_pred             HH
Q 048818          152 MS  153 (284)
Q Consensus       152 L~  153 (284)
                      +.
T Consensus       101 ~~  102 (171)
T d1ws6a1         101 LP  102 (171)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.60  E-value=0.72  Score=39.92  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=38.0

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCCCC--ceeEeccChhHHHHHhhhC
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNPRG--TTIFLEEDSKLVHTILARA  131 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~gG--rTvFLEEd~~~i~~v~~~~  131 (284)
                      ++....|=|.||.|+|-...+-..+.|.+  +.+.+|=||.-|+-.++-.
T Consensus        84 l~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~  133 (295)
T d1inla_          84 MFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYL  133 (295)
T ss_dssp             HHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHC
T ss_pred             HhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence            34456799999999999999988888854  4667899999888766543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=80.36  E-value=0.86  Score=38.69  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=37.6

Q ss_pred             HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhC
Q 048818           84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARA  131 (284)
Q Consensus        84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~  131 (284)
                      .+....|=|.||.|+|-.+.+=..+.|.  .+...+|=||.-++-.++-+
T Consensus        70 l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~  119 (274)
T d1iy9a_          70 LFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFL  119 (274)
T ss_dssp             HHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHC
T ss_pred             hhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhC
Confidence            4445568899999999999887778764  36778999999988776644