Citrus Sinensis ID: 048830
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LXY5 | 581 | Pentatricopeptide repeat- | yes | no | 0.980 | 0.929 | 0.560 | 0.0 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.941 | 0.872 | 0.416 | 1e-121 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.931 | 0.850 | 0.394 | 1e-109 | |
| Q0WQW5 | 638 | Pentatricopeptide repeat- | no | no | 0.931 | 0.804 | 0.398 | 1e-109 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.920 | 0.616 | 0.379 | 1e-107 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.940 | 0.835 | 0.384 | 1e-106 | |
| Q9SN85 | 591 | Pentatricopeptide repeat- | no | no | 0.952 | 0.888 | 0.391 | 1e-106 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.925 | 0.819 | 0.375 | 1e-105 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.938 | 0.784 | 0.366 | 1e-105 | |
| Q9C6T2 | 606 | Pentatricopeptide repeat- | no | no | 0.931 | 0.846 | 0.373 | 1e-104 |
| >sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/569 (56%), Positives = 416/569 (73%), Gaps = 29/569 (5%)
Query: 11 GLNKARQAHEIHGEWLLNSY--------------AISVSSSLSYAQLLFNQIQ-NPQTQA 55
G N ++ +IH ++N A+SV+ SLS+AQLLF+ +P T
Sbjct: 14 GCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSD 73
Query: 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
WN LIR F+ S SPL +I +YN ML++S+SRPD FTF F LK+CER+K++ KC E+HG V
Sbjct: 74 WNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSV 133
Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
IRSG+ +V+T+L+R Y+ANG +E A VFD MP RDLVSWN +I C++ H +AL
Sbjct: 134 IRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQAL 193
Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
+Y+RM E V D +TLV LLSSCAHV ALNMG+ LHRIAC++ V+V NAL+DMY
Sbjct: 194 SMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMY 253
Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
AKCG+L++A VF+ MRKRDVL+WNSMI+GYGVHG G EAISFF++M+ +G P++ITFL
Sbjct: 254 AKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFL 313
Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS- 354
GLL GCSHQGLV+EGVE+F +M S+++L P +KHYGC+VDLYGRAG+LE +LE+I SS
Sbjct: 314 GLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSC 373
Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
DPVLWRTLLGSCKIHRN+E+GE+AMK LVQLEA +AGDYVL+ +IY+ D + A
Sbjct: 374 HEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASM 433
Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
RKLI+S+ ++T PGWSWIEIG+QVHKFVVDDK HP++ +IY +L E+++RA GY ++
Sbjct: 434 RKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPED 493
Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
S + + S+ L + HSEKLAIA+GL T GT+LRI KNLR S
Sbjct: 494 S-NRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVS 552
Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
A++R++IVRDRVR+HHF DG+CSC DYW
Sbjct: 553 KAFNREIIVRDRVRFHHFADGICSCNDYW 581
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Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/540 (41%), Positives = 332/540 (61%), Gaps = 21/540 (3%)
Query: 30 YAISVSSS--LSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
Y +S+ S +SYA +F++I+ P WN+LIR +A+ + + A Y M ++ L
Sbjct: 59 YLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVE 118
Query: 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
PDT T+ F +KA + + + +H VIRSG+ + V +L+ YA G + +A V
Sbjct: 119 PDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKV 178
Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206
FD MPE+DLV+WNS+I+ + + EAL LY M + + DGFT+V LLS+CA +GAL
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGY 266
+G +H ++G +++ N L+D+YA+CG ++ A +F M ++ +SW S+IVG
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 267 GVHGRGDEAISFFKQM-LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
V+G G EAI FK M G P ITF+G+L CSH G+V+EG EYF M Y ++P
Sbjct: 299 AVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEP 358
Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKN 383
I+H+GC+VDL RAG+++KA E I S P P V+WRTLLG+C +H + ++ E A
Sbjct: 359 RIEHFGCMVDLLARAGQVKKAYEYIK-SMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQ 417
Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
++QLE +GDYVLL+ +YA + V + RK + +G+K PG S +E+GN+VH+F++
Sbjct: 418 ILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLM 477
Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
DKSHP +D IY KL+E+ R + GY S V V E E + YHSEK+AIAF
Sbjct: 478 GDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEK--ENAVVYHSEKIAIAF 535
Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
L +TP+ + + +VKNLR S Y+R+++VRDR R+HHF++G CSC DYW
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/530 (39%), Positives = 317/530 (59%), Gaps = 17/530 (3%)
Query: 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
SS+SYA+ LF + P +NS+ R +++ +PL+ + +L + PD +TF
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGI-LPDNYTFPSL 135
Query: 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
LKAC KAL + ++LH ++ G + V V L+ Y +++AR VFD + E +
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCV 195
Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215
V +N++I+ Y + + EAL L+ M+ + + + TL+ +LSSCA +G+L++G ++H+
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKY 255
Query: 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275
A + F + V V AL+DM+AKCG+LD A +F +MR +D +W++MIV Y HG+ +++
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKS 315
Query: 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335
+ F++M PD ITFLGLL CSH G VEEG +YF MVS++ + P IKHYG +VD
Sbjct: 316 MLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVD 375
Query: 336 LYGRAGKLEKALEVIN--TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
L RAG LE A E I+ SP+ P+LWR LL +C H N+++ E + + +L+ + G
Sbjct: 376 LLSRAGNLEDAYEFIDKLPISPT-PMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGG 434
Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
DYV+L+ +YA K E V RK++K PG S IE+ N VH+F D
Sbjct: 435 DYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTK 494
Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
++R L+E++ K GY D S+V V + ++ E + YHSEKLAI FGL TP GT+
Sbjct: 495 LHRALDEMVKELKLSGYVPDTSMV-VHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTT 553
Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
+R+VKNLR S+ + R +++RD R+HHF DG CSCGD+W
Sbjct: 554 IRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/545 (39%), Positives = 324/545 (59%), Gaps = 32/545 (5%)
Query: 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMASLSRPDTFTFTF 94
S ++YA +F+ I+N + WN+LIRA A +S +A Y ML S PD TF F
Sbjct: 97 SDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPF 156
Query: 95 TLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD 154
LKAC + ++ +++H +++ G+ V V+ L+ Y + G ++ AR VFD MPER
Sbjct: 157 VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERS 216
Query: 155 LVSWNSIISCYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFL 212
LVSWNS+I + + AL+L+ M+ FE DG+T+ +LS+CA +G+L++G +
Sbjct: 217 LVSWNSMIDALVRFGEYDSALQLFREMQRSFEP---DGYTMQSVLSACAGLGSLSLGTWA 273
Query: 213 HRI---ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
H C++ V V N+L++MY KCG+L A VF M+KRD+ SWN+MI+G+ H
Sbjct: 274 HAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATH 333
Query: 270 GRGDEAISFFKQML--MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
GR +EA++FF +M+ P+S+TF+GLL C+H+G V +G +YF MMV Y ++P +
Sbjct: 334 GRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPAL 393
Query: 328 KHYGCLVDLYGRAGKLEKALE-VINTSSPSDPVLWRTLLGSC-KIHRNVEIGEIAMKNLV 385
+HYGC+VDL RAG + +A++ V++ D V+WR+LL +C K +VE+ E +N++
Sbjct: 394 EHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNII 453
Query: 386 QLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQV 438
+ + +G YVLL+ +YA V RKL+ +GI+ PG S IEI
Sbjct: 454 GTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGIS 513
Query: 439 HKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEK 498
H+F D SHP IY++L+ I R + IGY D S + ++++ E S HSE+
Sbjct: 514 HEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 573
Query: 499 LAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCS 546
LAIAFGL P T +RI KNLR S ++ ++IVRDRVR+HHF+DG CS
Sbjct: 574 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 633
Query: 547 CGDYW 551
C DYW
Sbjct: 634 CLDYW 638
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/525 (37%), Positives = 310/525 (59%), Gaps = 18/525 (3%)
Query: 42 QLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101
Q +F+++ +WNS+I+A+ + PL+AI + M ++ + +PD T +
Sbjct: 302 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI-QPDCLTLISLASILSQ 360
Query: 102 VKALNKCQELHGFVIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
+ + C+ + GF +R G + + + ++ YA G++++AR+VF+ +P D++SWN+
Sbjct: 361 LGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNT 420
Query: 161 IISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219
IIS Y Q F EA+++Y M E ++ + T V +L +C+ GAL G+ LH +
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 480
Query: 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
G V+V +L DMY KCG L+ A +F ++ + + + WN++I +G HG G++A+ F
Sbjct: 481 GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLF 540
Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
K+ML G PD ITF+ LL CSH GLV+EG F MM + Y + P +KHYGC+VD+YGR
Sbjct: 541 KEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGR 600
Query: 340 AGKLEKALEVINTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398
AG+LE AL+ I + S D +W LL +C++H NV++G+IA ++L ++E G +VLL
Sbjct: 601 AGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLL 660
Query: 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKL 458
+ +YA EGV R + G++ TPGWS +E+ N+V F +++HP + +YR+L
Sbjct: 661 SNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYREL 720
Query: 459 EEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVK 518
+ + K IGY D V +D E HSE+LAIAF L TP T++RI K
Sbjct: 721 TALQAKLKMIGYVPDHRFVL--QDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFK 778
Query: 519 NLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
NLR S R++IVRD R+HHF++G+CSCGDYW
Sbjct: 779 NLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 220/572 (38%), Positives = 309/572 (54%), Gaps = 54/572 (9%)
Query: 29 SYAISVSSS--LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSR 86
S+ IS +SS L YAQ++F+ P T WN +IR F+ S P +++ Y ML +S
Sbjct: 54 SFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH 113
Query: 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
+ +TF LKAC + A + ++H + + GYE V +L+ YA G + A +
Sbjct: 114 -NAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLL 172
Query: 147 FDNMPERDLVSWNSII-------------------------------SCYTQASFHLEAL 175
FD +PE D VSWNS+I S Y QA + EAL
Sbjct: 173 FDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEAL 232
Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
+L+ M+ DV D +L LS+CA +GAL G ++H + +G L+DMY
Sbjct: 233 QLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMY 292
Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
AKCG ++ A VF ++K+ V +W ++I GY HG G EAIS F +M G P+ ITF
Sbjct: 293 AKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 352
Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355
+L CS+ GLVEEG F+ M YNLKP I+HYGC+VDL GRAG L++A I P
Sbjct: 353 AVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQ-EMP 411
Query: 356 SDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413
P V+W LL +C+IH+N+E+GE + L+ ++ G YV A I+A K + A
Sbjct: 412 LKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAE 471
Query: 414 TRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK- 472
TR+L+K G+ PG S I + H+F+ D+SHP+ + I K + + + GY
Sbjct: 472 TRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPE 531
Query: 473 -DESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR---------- 521
+E L+ + +D E HSEKLAI +GL T GT +RI+KNLR
Sbjct: 532 LEEMLLDL---VDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTK 588
Query: 522 --SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S Y RD+++RDR R+HHFRDG CSCGDYW
Sbjct: 589 LISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/544 (39%), Positives = 311/544 (57%), Gaps = 19/544 (3%)
Query: 26 LLNSYAIS-VSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84
L+ A+S + ++Y+ +F+Q NP N++IRAF+ S +P + + + S
Sbjct: 49 FLSRLALSLIPRDINYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSS 108
Query: 85 SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144
+ + +F LK C + L ++HG + G+ ++ T LM Y+ A
Sbjct: 109 LPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDAC 168
Query: 145 SVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL---DGFTLVCLLSSCA 201
VFD +P+RD VSWN + SCY + + L L+++M+ + G DG T + L +CA
Sbjct: 169 KVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACA 228
Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
++GAL+ G +H E G ++ + N LV MY++CG++D A+ VF MR+R+V+SW +
Sbjct: 229 NLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTA 288
Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-R 320
+I G ++G G EAI F +ML G P+ T GLL CSH GLV EG+ +F M S
Sbjct: 289 LISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGE 348
Query: 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEI 379
+ +KP + HYGC+VDL GRA L+KA +I + D +WRTLLG+C++H +VE+GE
Sbjct: 349 FKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGER 408
Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
+ +L++L+A AGDYVLL Y+ E V R L+K I T PG S IE+ VH
Sbjct: 409 VISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVH 468
Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKL 499
+F+VDD SHP + IY+ L EI + K GY E + SE+ + YHSEKL
Sbjct: 469 EFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVA-EITSELHNLESEEEKGYALRYHSEKL 527
Query: 500 AIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547
AIAFG+ TP GT++R+ KNLR S Y R +IVRDR R+HHF+ G CSC
Sbjct: 528 AIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSC 587
Query: 548 GDYW 551
D+W
Sbjct: 588 NDFW 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/560 (37%), Positives = 316/560 (56%), Gaps = 50/560 (8%)
Query: 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
L YA +F+QIQNP +N LIR F+ P +A +Y ML + + PD TF F +K
Sbjct: 67 LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRI-WPDNITFPFLIK 125
Query: 98 ACERVKALNKCQELHGFVIRSGYE-------------------------------RCVVV 126
A ++ + ++ H ++R G++ R VV
Sbjct: 126 ASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVS 185
Query: 127 STNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186
T+++ GY G++E AR +FD MP R+L +W+ +I+ Y + + +A+ L+E M+ E V
Sbjct: 186 WTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGV 245
Query: 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246
+ +V ++SSCAH+GAL G + + ++ +G ALVDM+ +CG+++ A
Sbjct: 246 VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIH 305
Query: 247 VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306
VF + + D LSW+S+I G VHG +A+ +F QM+ GF P +TF +L CSH GL
Sbjct: 306 VFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGL 365
Query: 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS--SPSDPVLWRTL 364
VE+G+E + M + ++P ++HYGC+VD+ GRAGKL +A I P+ P+L L
Sbjct: 366 VEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPIL-GAL 424
Query: 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424
LG+CKI++N E+ E L++++ +G YVLL+ IYAC + + R ++K +K
Sbjct: 425 LGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVK 484
Query: 425 TTPGWSWIEIGNQVHKFVV-DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
PGWS IEI +++KF + DD+ HP+ I RK EEI+ + + IGY +
Sbjct: 485 KPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDE 544
Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIV 531
E E S HSEKLAIA+G+ T GT++RIVKNLR S Y R+LIV
Sbjct: 545 EEK--ESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIV 602
Query: 532 RDRVRYHHFRDGLCSCGDYW 551
RDR R+HHFR+G+CSC DYW
Sbjct: 603 RDRNRFHHFRNGVCSCRDYW 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/540 (36%), Positives = 313/540 (57%), Gaps = 23/540 (4%)
Query: 33 SVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD---- 88
S L A+ +F++I +W S+IR + + + L A+ + +L+ D
Sbjct: 122 STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFL 181
Query: 89 -TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA--ANGVIEAARS 145
+ + AC RV A + +H FVI+ G++R V V L+ YA G + AR
Sbjct: 182 DSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARK 241
Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVG 204
+FD + ++D VS+NSI+S Y Q+ EA +++ R+ + + V + TL +L + +H G
Sbjct: 242 IFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG 301
Query: 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIV 264
AL +G +H MG + V VG +++DMY KCG +++A F RM+ ++V SW +MI
Sbjct: 302 ALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIA 361
Query: 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324
GYG+HG +A+ F M+ +G P+ ITF+ +L CSH GL EG +F+ M R+ ++
Sbjct: 362 GYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVE 421
Query: 325 PGIKHYGCLVDLYGRAGKLEKALEVIN-TSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKN 383
PG++HYGC+VDL GRAG L+KA ++I D ++W +LL +C+IH+NVE+ EI++
Sbjct: 422 PGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVAR 481
Query: 384 LVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVV 443
L +L++++ G Y+LL+ IYA + V R R ++K+ G+ PG+S +E+ +VH F++
Sbjct: 482 LFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLI 541
Query: 444 DDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAF 503
D+ HP + IY L E+ + GY + S +V E+ E + HSEKLAIAF
Sbjct: 542 GDEEHPQREKIYEFLAELNRKLLEAGYVSNTS--SVCHDVDEEEKEMTLRVHSEKLAIAF 599
Query: 504 GLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
G+ T G+++ +VKNLR S R+ +VRD R+HHF+DG CSCGDYW
Sbjct: 600 GIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/530 (37%), Positives = 317/530 (59%), Gaps = 17/530 (3%)
Query: 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95
+S++YA +F I +P T +N++IR + +S +A+ +YN M M + PD FT+
Sbjct: 80 NSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEM-MQRGNEPDNFTYPCL 138
Query: 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL 155
LKAC R+K++ + +++HG V + G E V V +L+ Y G +E + +VF+ + +
Sbjct: 139 LKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTA 198
Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHR 214
SW+S++S E L L+ M E ++ + +V L +CA+ GALN+G+ +H
Sbjct: 199 ASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHG 258
Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274
++ V +LVDMY KCG LD A +F +M KR+ L++++MI G +HG G+
Sbjct: 259 FLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGES 318
Query: 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334
A+ F +M+ G PD + ++ +L CSH GLV+EG F M+ ++P +HYGCLV
Sbjct: 319 ALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLV 378
Query: 335 DLYGRAGKLEKALEVINT-SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393
DL GRAG LE+ALE I + + V+WRT L C++ +N+E+G+IA + L++L + + G
Sbjct: 379 DLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPG 438
Query: 394 DYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADM 453
DY+L++ +Y+ + + VARTR I G+K TPG+S +E+ + H+FV D+SHP
Sbjct: 439 DYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKE 498
Query: 454 IYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTS 513
IY+ L ++ + KF GY+ D L + + E+ ++ HS+K+AIAFGL TP G+
Sbjct: 499 IYKMLHQMEWQLKFEGYSPD--LTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSI 556
Query: 514 LRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
++I +NLR S+ Y R+++VRDR R+H F+ G CSC DYW
Sbjct: 557 IKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | ||||||
| 224139652 | 584 | predicted protein [Populus trichocarpa] | 0.992 | 0.936 | 0.674 | 0.0 | |
| 359487598 | 603 | PREDICTED: pentatricopeptide repeat-cont | 0.980 | 0.895 | 0.652 | 0.0 | |
| 296089864 | 585 | unnamed protein product [Vitis vinifera] | 0.980 | 0.923 | 0.652 | 0.0 | |
| 147838430 | 978 | hypothetical protein VITISV_020294 [Viti | 0.956 | 0.538 | 0.677 | 0.0 | |
| 449477795 | 579 | PREDICTED: pentatricopeptide repeat-cont | 0.954 | 0.908 | 0.633 | 0.0 | |
| 449470352 | 579 | PREDICTED: pentatricopeptide repeat-cont | 0.954 | 0.908 | 0.633 | 0.0 | |
| 15228954 | 581 | pentatricopeptide repeat-containing prot | 0.980 | 0.929 | 0.560 | 0.0 | |
| 297820424 | 651 | pentatricopeptide repeat-containing prot | 0.958 | 0.811 | 0.581 | 0.0 | |
| 359483655 | 613 | PREDICTED: pentatricopeptide repeat-cont | 0.952 | 0.856 | 0.428 | 1e-124 | |
| 356546516 | 591 | PREDICTED: pentatricopeptide repeat-cont | 0.938 | 0.874 | 0.424 | 1e-121 |
| >gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa] gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/562 (67%), Positives = 445/562 (79%), Gaps = 15/562 (2%)
Query: 3 LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRA 62
LKK +V +N Q H +LN A+S+S SL YAQ LF I NPQTQAWNS+IR
Sbjct: 25 LKKIQAHVIVN-GLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRG 83
Query: 63 FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYER 122
FAQS SP+QAIFYYN ML S+S PDTFTF+FTLKACER+KAL KC+E+HG +IR+GYER
Sbjct: 84 FAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYER 143
Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182
VVV T L+R Y NG +E AR VFDNMPERDLV+WN++ISCY+QA +H EAL++Y+ MR
Sbjct: 144 DVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMR 203
Query: 183 FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242
E+VG+DGFTLV LLSSC+HVGALNMG+ LHRIA E G + +V+VGNAL+DMYAKCG+LD
Sbjct: 204 NENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLD 263
Query: 243 SAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302
A VF+ M RD +WNSMIVG+GVHG GDEAI FF QML AG P+SI FLGLLCGCS
Sbjct: 264 GALEVFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCS 322
Query: 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDPVLW 361
HQGLVEEGVE+FH M S++N+KPGIKHYGC+VD+YGRAGKLEKALE+I S DPVLW
Sbjct: 323 HQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLW 382
Query: 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421
R LL S KIH+NV IGEIAM+NL QL A +AGD VLLATIYA DE+GVAR RKLIK
Sbjct: 383 RILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQGVARMRKLIKKQ 442
Query: 422 GIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSG 481
GIKTTPGWSWIE+ +QVH+FVVDDKSHPD++MIY+KLEE+ H+A GY +D+S G
Sbjct: 443 GIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFIFHG 502
Query: 482 SSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDL 529
S SE+ LE SS YHSEKLAIAFGLA TP+GTSLRIVKNLR S A++RD+
Sbjct: 503 SCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFNRDI 562
Query: 530 IVRDRVRYHHFRDGLCSCGDYW 551
IVRDR+R+HHF+ GLCSC DYW
Sbjct: 563 IVRDRLRFHHFKGGLCSCRDYW 584
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/573 (65%), Positives = 453/573 (79%), Gaps = 33/573 (5%)
Query: 11 GLNKARQAHEIHGEWLLNSY--------------AISVSSSLSYAQLLFNQIQNPQTQAW 56
G N R+ H+IH L+N Y A+SVS SL+YAQL+F++I NPQT AW
Sbjct: 32 GCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAW 91
Query: 57 NSLIRAFAQSLSPLQ--AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
NS+IR F+QS SPLQ AI +YNHML AS +RPDT+TF+F LKACE K KC+E+HGF
Sbjct: 92 NSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGF 151
Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
+IR GY++ VV+ TNL+R YA NG+IE A VF+ MP RDLVSWNS+ISCY Q H EA
Sbjct: 152 IIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 211
Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
LK+Y++MR +VG DGFTLV LLSSCAHVGAL+MG+ +HR A E VE+++VGNAL+DM
Sbjct: 212 LKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDM 271
Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
YAKCG+L SA +F+ M KRDV +WNSMIVGYGVHGRGDEAI+FF MLMAG P+SITF
Sbjct: 272 YAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITF 331
Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
LGLLCGCSHQGLV+EGV+YFHMM S +NLKPGIKHYGC+VDL+GRAGKL++ALEVI SS
Sbjct: 332 LGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIR-SS 390
Query: 355 PS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
PS DPVLWRTLLGSCKIHRNVEIGE+AM+NLVQL + AGD VLL+ IYA KD +GVA
Sbjct: 391 PSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVA 450
Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
R RKLI+S GIKTTPGWSWIE+G+QVH+FVVDDKSHPD+ IYRKLEE++HRA +GY
Sbjct: 451 RMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAM 510
Query: 473 DE-SLVAVSGSSSEDFL-EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
+E SLVA S+++++ E S++YHSEKLAIA+GLA TP+GTSL IVKNLR
Sbjct: 511 EESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFT 570
Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S+A+ R++IVRDRVR+HHF+ G CSC ++W
Sbjct: 571 KFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/573 (65%), Positives = 453/573 (79%), Gaps = 33/573 (5%)
Query: 11 GLNKARQAHEIHGEWLLNSY--------------AISVSSSLSYAQLLFNQIQNPQTQAW 56
G N R+ H+IH L+N Y A+SVS SL+YAQL+F++I NPQT AW
Sbjct: 14 GCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAW 73
Query: 57 NSLIRAFAQSLSPLQ--AIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
NS+IR F+QS SPLQ AI +YNHML AS +RPDT+TF+F LKACE K KC+E+HGF
Sbjct: 74 NSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGF 133
Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
+IR GY++ VV+ TNL+R YA NG+IE A VF+ MP RDLVSWNS+ISCY Q H EA
Sbjct: 134 IIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEA 193
Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
LK+Y++MR +VG DGFTLV LLSSCAHVGAL+MG+ +HR A E VE+++VGNAL+DM
Sbjct: 194 LKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDM 253
Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
YAKCG+L SA +F+ M KRDV +WNSMIVGYGVHGRGDEAI+FF MLMAG P+SITF
Sbjct: 254 YAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITF 313
Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
LGLLCGCSHQGLV+EGV+YFHMM S +NLKPGIKHYGC+VDL+GRAGKL++ALEVI SS
Sbjct: 314 LGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIR-SS 372
Query: 355 PS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412
PS DPVLWRTLLGSCKIHRNVEIGE+AM+NLVQL + AGD VLL+ IYA KD +GVA
Sbjct: 373 PSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVA 432
Query: 413 RTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTK 472
R RKLI+S GIKTTPGWSWIE+G+QVH+FVVDDKSHPD+ IYRKLEE++HRA +GY
Sbjct: 433 RMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAM 492
Query: 473 DE-SLVAVSGSSSEDFL-EKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR--------- 521
+E SLVA S+++++ E S++YHSEKLAIA+GLA TP+GTSL IVKNLR
Sbjct: 493 EESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFT 552
Query: 522 ---SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S+A+ R++IVRDRVR+HHF+ G CSC ++W
Sbjct: 553 KFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/546 (67%), Positives = 444/546 (81%), Gaps = 19/546 (3%)
Query: 24 EWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQ--AIFYYNHMLM 81
E LLN A+SVS SL+YAQL+F++I NPQT AWNS+IR F+QS SPLQ AI +YNHML
Sbjct: 434 EKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLS 493
Query: 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141
AS +RPDT+TF+F LKACE K KC+E+HGF+IR GY++ VV+ TNL+R YA NG+IE
Sbjct: 494 ASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIE 553
Query: 142 AARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCA 201
A VF+ MP RDLVSWNS+ISCY Q H EALK+Y++MR +VG DGFTLV LLSSCA
Sbjct: 554 TAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCA 613
Query: 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS 261
HVGAL+MG+ +HR A E VE+++VGNAL+DMYAKCG+L SA +F+ M KRDV +WNS
Sbjct: 614 HVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNS 673
Query: 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321
MIVGYGVHGRGDEAI+FF MLMAG P+SITFLGLLCGCSHQGLV+EGV+YFHMM S +
Sbjct: 674 MIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEF 733
Query: 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEI 379
NLKPGIKHYGC+VDL+GRAGKL++ALEVI SSPS DPVLWRTLLGSCKIHRNVEIGE+
Sbjct: 734 NLKPGIKHYGCMVDLFGRAGKLKEALEVIR-SSPSQHDPVLWRTLLGSCKIHRNVEIGEM 792
Query: 380 AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
AM+NLVQL + AGD VLL+ IYA KD +GVAR RKLI+S GIKTTPGWSWIE+G+QVH
Sbjct: 793 AMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVH 852
Query: 440 KFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE-SLVAVSGSSSEDFL-EKSSAYHSE 497
+FVVDDKSHPD+ IYRKLEE++HRA +GY +E SLVA S+++++ E S++YHSE
Sbjct: 853 RFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSE 912
Query: 498 KLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLC 545
KLAIA+GLA TP+GTSL IVKNLR S A+ R++IVRDRVR+HHFR G C
Sbjct: 913 KLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVRFHHFRGGHC 972
Query: 546 SCGDYW 551
SC ++W
Sbjct: 973 SCKEFW 978
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein At3g56550-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/538 (63%), Positives = 424/538 (78%), Gaps = 12/538 (2%)
Query: 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
LLN AISVS SL+YAQLLF+Q++ PQT+AWNS+IR FAQS SP+ AI +YN M+ S S
Sbjct: 42 LLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFS 101
Query: 86 RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
PDTFTF+F LKACER+KA KC+E+HG VIR GY+ V+V TNL++ Y+A G++ AR
Sbjct: 102 IPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQ 161
Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
VFD MP RDLV+WN++ISC++Q H EAL+ Y +MR E+V +DGFTLV L+SSCAH+GA
Sbjct: 162 VFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGA 221
Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
LN+G+ +HR A E G +S+YVGNAL+DMYAKCG+LD A +F RM+++D+ +WNSMIVG
Sbjct: 222 LNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVG 281
Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
YGVHGRG EAI F+QML A P+ +TFLGLLCGCSHQGLV+EGV+YF++M S++ LKP
Sbjct: 282 YGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKP 341
Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
+KHYGCLVDLYGRAGKL+KALE+++ SS +D VLWR LLGSCKIH+NV IGEIAM L
Sbjct: 342 EVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLS 401
Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
+L A SAGD +LLATIYA KD+ GVAR RK+IKS G KTTPGWSWIEIG QVHKFVVDD
Sbjct: 402 ELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDD 461
Query: 446 KSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGL 505
KSH + +Y KL E++H+A F GY DES+ ++ S+ + L+ S YHSEKLAIAFGL
Sbjct: 462 KSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGL 521
Query: 506 ATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
A T DGT +RIVKNLR S+A++R++IVRDRVR+HHF+ G CSC DYW
Sbjct: 522 ARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein At3g56550-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/538 (63%), Positives = 423/538 (78%), Gaps = 12/538 (2%)
Query: 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLS 85
LLN AISVS SL+YAQLLF+Q++ PQT+AWNS+IR FAQS SP+ AI +YN M+ S S
Sbjct: 42 LLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFS 101
Query: 86 RPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARS 145
PDTFTF+F LKACER+KA KC+E+HG VIR GY+ V+V TNL++ Y+A G + AR
Sbjct: 102 IPDTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQ 161
Query: 146 VFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205
VFD MP RDLV+WN++ISC++Q H EAL+ Y +MR E+V +DGFTLV L+SSCAH+GA
Sbjct: 162 VFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGA 221
Query: 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
LN+G+ +HR A E G +S+YVGNAL+DMYAKCG+LD A +F RM+++D+ +WNSMIVG
Sbjct: 222 LNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVG 281
Query: 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325
YGVHGRG EAI F+QML A P+ +TFLGLLCGCSHQGLV+EGV+YF++M S++ LKP
Sbjct: 282 YGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKP 341
Query: 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385
+KHYGCLVDLYGRAGKL+KALE+++ SS +D VLWR LLGSCKIH+NV IGEIAM L
Sbjct: 342 EVKHYGCLVDLYGRAGKLDKALEIVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLS 401
Query: 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDD 445
+L A SAGD +LLATIYA KD+ GVAR RK+IKS G KTTPGWSWIEIG QVHKFVVDD
Sbjct: 402 ELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDD 461
Query: 446 KSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGL 505
KSH + +Y KL E++H+A F GY DES+ ++ S+ + L+ S YHSEKLAIAFGL
Sbjct: 462 KSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGL 521
Query: 506 ATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
A T DGT +RIVKNLR S+A++R++IVRDRVR+HHF+ G CSC DYW
Sbjct: 522 ARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana] gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/569 (56%), Positives = 416/569 (73%), Gaps = 29/569 (5%)
Query: 11 GLNKARQAHEIHGEWLLNSY--------------AISVSSSLSYAQLLFNQIQ-NPQTQA 55
G N ++ +IH ++N A+SV+ SLS+AQLLF+ +P T
Sbjct: 14 GCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSD 73
Query: 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFV 115
WN LIR F+ S SPL +I +YN ML++S+SRPD FTF F LK+CER+K++ KC E+HG V
Sbjct: 74 WNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSV 133
Query: 116 IRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEAL 175
IRSG+ +V+T+L+R Y+ANG +E A VFD MP RDLVSWN +I C++ H +AL
Sbjct: 134 IRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQAL 193
Query: 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235
+Y+RM E V D +TLV LLSSCAHV ALNMG+ LHRIAC++ V+V NAL+DMY
Sbjct: 194 SMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMY 253
Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
AKCG+L++A VF+ MRKRDVL+WNSMI+GYGVHG G EAISFF++M+ +G P++ITFL
Sbjct: 254 AKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFL 313
Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS- 354
GLL GCSHQGLV+EGVE+F +M S+++L P +KHYGC+VDLYGRAG+LE +LE+I SS
Sbjct: 314 GLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSC 373
Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
DPVLWRTLLGSCKIHRN+E+GE+AMK LVQLEA +AGDYVL+ +IY+ D + A
Sbjct: 374 HEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASM 433
Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
RKLI+S+ ++T PGWSWIEIG+QVHKFVVDDK HP++ +IY +L E+++RA GY ++
Sbjct: 434 RKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPED 493
Query: 475 SLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------S 522
S + + S+ L + HSEKLAIA+GL T GT+LRI KNLR S
Sbjct: 494 S-NRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVS 552
Query: 523 IAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
A++R++IVRDRVR+HHF DG+CSC DYW
Sbjct: 553 KAFNREIIVRDRVRFHHFADGICSCNDYW 581
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/554 (58%), Positives = 415/554 (74%), Gaps = 26/554 (4%)
Query: 12 LNKARQAHE---IHG--------EWLLNSYAISVSSSLSYAQLLFNQIQ-NPQTQAWNSL 59
+NK R+ H I+G LL A+SV+ SLSYAQLLF++ +P T AWN L
Sbjct: 18 MNKLRKIHSHVIINGLHHHPSIFNHLLRFCAVSVNGSLSYAQLLFDRFDSDPSTSAWNYL 77
Query: 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
IR F+ S SPL I YYN ML++S+SRPD FTF+F LKACER++ + KC ELHG VIRSG
Sbjct: 78 IRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCLELHGSVIRSG 137
Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179
+ +VSTNL+R Y+ANG +E A VFD MP RDLVSWN++ISC++ A H +A +Y
Sbjct: 138 FLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMISCFSHAGLHHQAFSMYS 197
Query: 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239
RM E V +D +T+V LLSSCAHV ALNMG+ LHRIAC++ SV+V NAL+DMYAKCG
Sbjct: 198 RMANEGVCVDAYTIVALLSSCAHVSALNMGVMLHRIACDIRCESSVFVCNALIDMYAKCG 257
Query: 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299
+L++A VF MRKRDVL+WNSMI+GYGVHG G EAISFF++M+ +G P+++TFLGLL
Sbjct: 258 SLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAVTFLGLLL 317
Query: 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS-PSDP 358
GCSHQGLV+EGVE+F +M S+++L P +KHYGC+VDL+GRAG+LEKALE+I+TSS DP
Sbjct: 318 GCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGRAGQLEKALEMIHTSSCHEDP 377
Query: 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418
VLWRTLLGSCKIHRN+E+GE+AMK LVQLEA +AGDYVL+ +IY+ D +G A RKLI
Sbjct: 378 VLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQGFASMRKLI 437
Query: 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVA 478
+S+ ++T PGWSWIEIG+QVHKFV+DDK HP++ +IY +L E+++RA GY ++S
Sbjct: 438 RSHDLRTIPGWSWIEIGDQVHKFVIDDKMHPESALIYSELGEVINRAILAGYKPEDS-NR 496
Query: 479 VSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYS 526
+ + S+ LE + HSEKLAIA+GL T GT+LRI KNLR S A++
Sbjct: 497 TAHTLSDRCLESADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFN 556
Query: 527 RDLIVRDRVRYHHF 540
R++IVRDRVR+H F
Sbjct: 557 REIIVRDRVRFHQF 570
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/542 (42%), Positives = 336/542 (61%), Gaps = 17/542 (3%)
Query: 23 GEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA 82
G++L+ + +S S +SYA +F+QIQNP WN++IR +A+S +P+ A+ Y M ++
Sbjct: 76 GKYLIFTL-LSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVS 134
Query: 83 SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142
+ PDT T+ F LKA ++ + + +++H IR+G+E V V L+ YAA G E+
Sbjct: 135 CIE-PDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAES 193
Query: 143 ARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
A +F+ M ER+LV+WNS+I+ Y EAL L+ M V DGFT+V LLS+CA
Sbjct: 194 AHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAE 253
Query: 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM 262
+GAL +G H ++G +++ GNAL+D+YAKCG++ A VF M ++ V+SW S+
Sbjct: 254 LGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSL 313
Query: 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322
IVG V+G G EA+ FK++ G P ITF+G+L CSH G+V+EG +YF M Y
Sbjct: 314 IVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYG 373
Query: 323 LKPGIKHYGCLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381
+ P I+HYGC+VDL GRAG +++A E I N + V+WRTLLG+C IH ++ +GE+A
Sbjct: 374 IVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVAR 433
Query: 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKF 441
L+QLE +GDYVLL+ +YA + V + R+ + G+K TPG S +E+ N++H+F
Sbjct: 434 AQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEF 493
Query: 442 VVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAI 501
V+ D+SHP + IY KL EI K GY S V E E + +YHSEK+AI
Sbjct: 494 VMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEK--ETALSYHSEKIAI 551
Query: 502 AFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGD 549
AF L T G +R+VKNLR S + R+++VRDR R+HHF+DG CSC D
Sbjct: 552 AFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKD 611
Query: 550 YW 551
YW
Sbjct: 612 YW 613
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/533 (42%), Positives = 331/533 (62%), Gaps = 16/533 (3%)
Query: 32 ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91
+S+S+ +SYA +F I NP WN++IR +A+S +P A +Y M+++ + PDT T
Sbjct: 62 VSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCV-EPDTHT 120
Query: 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP 151
+ F LKA + + + + +H IR+G+E V V +L+ YAA G E+A VF+ M
Sbjct: 121 YPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMK 180
Query: 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211
ERDLV+WNS+I+ + EAL L+ M E V DGFT+V LLS+ A +GAL +G
Sbjct: 181 ERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRR 240
Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271
+H ++G ++ +V N+L+D+YAKCG + A VFS M +R+ +SW S+IVG V+G
Sbjct: 241 VHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGF 300
Query: 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331
G+EA+ FK+M G P ITF+G+L CSH G+++EG EYF M + P I+HYG
Sbjct: 301 GEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYG 360
Query: 332 CLVDLYGRAGKLEKALEVI-NTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
C+VDL RAG +++A E I N + V+WRTLLG+C IH ++ +GEIA +L+ LE
Sbjct: 361 CMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPK 420
Query: 391 SAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPD 450
+GDYVLL+ +YA + V R+ + +G+K TPG+S +E+GN+V++F + D+SHP
Sbjct: 421 HSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQ 480
Query: 451 ADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPD 510
+ +Y LE+I K GY + V E E++ +YHSEK+AIAF L TP
Sbjct: 481 SQDVYALLEKITELLKLEGYVPHTANVLADIEEEEK--EQALSYHSEKVAIAFMLLNTPP 538
Query: 511 GTSLRIVKNLRSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
GT +R++KNLR A Y R++++RDR R+HHFR G CSC DYW
Sbjct: 539 GTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | ||||||
| TAIR|locus:2102514 | 581 | AT3G56550 [Arabidopsis thalian | 0.909 | 0.862 | 0.590 | 4.8e-165 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.914 | 0.847 | 0.418 | 4.3e-109 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.912 | 0.788 | 0.402 | 2.7e-100 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.907 | 0.631 | 0.374 | 2.9e-99 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.896 | 0.600 | 0.384 | 2.8e-98 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.914 | 0.835 | 0.389 | 2.5e-97 | |
| TAIR|locus:2079187 | 591 | AT3G47530 "AT3G47530" [Arabido | 0.914 | 0.852 | 0.403 | 3.2e-97 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.916 | 0.766 | 0.369 | 1.4e-96 | |
| TAIR|locus:2034456 | 606 | AT1G31920 [Arabidopsis thalian | 0.912 | 0.830 | 0.375 | 9.7e-96 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.914 | 0.680 | 0.371 | 1.2e-95 |
| TAIR|locus:2102514 AT3G56550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1606 (570.4 bits), Expect = 4.8e-165, P = 4.8e-165
Identities = 304/515 (59%), Positives = 390/515 (75%)
Query: 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109
+P T WN LIR F+ S SPL +I +YN ML++S+SRPD FTF F LK+CER+K++ KC
Sbjct: 68 DPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL 127
Query: 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQAS 169
E+HG VIRSG+ +V+T+L+R Y+ANG +E A VFD MP RDLVSWN +I C++
Sbjct: 128 EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVG 187
Query: 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229
H +AL +Y+RM E V D +TLV LLSSCAHV ALNMG+ LHRIAC++ V+V N
Sbjct: 188 LHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSN 247
Query: 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289
AL+DMYAKCG+L++A VF+ MRKRDVL+WNSMI+GYGVHG G EAISFF++M+ +G P
Sbjct: 248 ALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRP 307
Query: 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349
++ITFLGLL GCSHQGLV+EGVE+F +M S+++L P +KHYGC+VDLYGRAG+LE +LE+
Sbjct: 308 NAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEM 367
Query: 350 INTSS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408
I SS DPVLWRTLLGSCKIHRN+E+GE+AMK LVQLEA +AGDYVL+ +IY+ D
Sbjct: 368 IYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDA 427
Query: 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFI 468
+ A RKLI+S+ ++T PGWSWIEIG+QVHKFVVDDK HP++ +IY +L E+++RA
Sbjct: 428 QAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILA 487
Query: 469 GYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------- 521
GY K E + + S+ L + HSEKLAIA+GL T GT+LRI KNLR
Sbjct: 488 GY-KPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHS 546
Query: 522 -----SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S A++R++IVRDRVR+HHF DG+CSC DYW
Sbjct: 547 FTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 219/523 (41%), Positives = 322/523 (61%)
Query: 45 FNQIQNP-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103
F++I+ P WN+LIR +A+ + + A Y M ++ L PDT T+ F +KA +
Sbjct: 76 FSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMA 135
Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
+ + +H VIRSG+ + V +L+ YA G + +A VFD MPE+DLV+WNS+I+
Sbjct: 136 DVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVIN 195
Query: 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
+ + EAL LY M + + DGFT+V LLS+CA +GAL +G +H ++G
Sbjct: 196 GFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR 255
Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
+++ N L+D+YA+CG ++ A +F M ++ +SW S+IVG V+G G EAI FK M
Sbjct: 256 NLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYME 315
Query: 284 MA-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
G P ITF+G+L CSH G+V+EG EYF M Y ++P I+H+GC+VDL RAG+
Sbjct: 316 STEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQ 375
Query: 343 LEKALEVINTSSPSDP--VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400
++KA E I S P P V+WRTLLG+C +H + ++ E A ++QLE +GDYVLL+
Sbjct: 376 VKKAYEYIK-SMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSN 434
Query: 401 IYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEE 460
+YA + V + RK + +G+K PG S +E+GN+VH+F++ DKSHP +D IY KL+E
Sbjct: 435 MYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKE 494
Query: 461 IMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNL 520
+ R + GY S V V E E + YHSEK+AIAF L +TP+ + + +VKNL
Sbjct: 495 MTGRLRSEGYVPQISNVYVDVEEEEK--ENAVVYHSEKIAIAFMLISTPERSPITVVKNL 552
Query: 521 RSIA------------YSRDLIVRDRVRYHHFRDGLCSCGDYW 551
R A Y+R+++VRDR R+HHF++G CSC DYW
Sbjct: 553 RVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
Identities = 216/537 (40%), Positives = 321/537 (59%)
Query: 45 FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFY-YNHMLMASLSRPDTFTFTFTLKACERVK 103
F+ I+N + WN+LIRA A +S + F Y ML S PD TF F LKAC +
Sbjct: 106 FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 165
Query: 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS 163
++ +++H +++ G+ V V+ L+ Y + G ++ AR VFD MPER LVSWNS+I
Sbjct: 166 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 225
Query: 164 CYTQASFHLEALKLYERMR--FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA---CE 218
+ + AL+L+ M+ FE DG+T+ +LS+CA +G+L++G + H C+
Sbjct: 226 ALVRFGEYDSALQLFREMQRSFEP---DGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCD 282
Query: 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF 278
+ V V N+L++MY KCG+L A VF M+KRD+ SWN+MI+G+ HGR +EA++F
Sbjct: 283 VDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNF 342
Query: 279 FKQML--MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
F +M+ P+S+TF+GLL C+H+G V +G +YF MMV Y ++P ++HYGC+VDL
Sbjct: 343 FDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDL 402
Query: 337 YGRAGKLEKALEVINTSSPSDP--VLWRTLLGSC-KIHRNVEIGEIAMKNLVQL----EA 389
RAG + +A++++ S P P V+WR+LL +C K +VE+ E +N++ E+
Sbjct: 403 IARAGYITEAIDMV-MSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNES 461
Query: 390 AS---AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446
++ +G YVLL+ +YA V RKL+ +GI+ PG S IEI H+F D
Sbjct: 462 SNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDT 521
Query: 447 SHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLA 506
SHP IY++L+ I R + IGY D S + ++++ E S HSE+LAIAFGL
Sbjct: 522 SHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLI 581
Query: 507 TTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
P T +RI KNLR S ++ ++IVRDRVR+HHF+DG CSC DYW
Sbjct: 582 NLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 195/521 (37%), Positives = 301/521 (57%)
Query: 45 FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
F + + P A+N++I + + ++ + LM S +R + T + +
Sbjct: 279 FREFRKPDIVAYNAMIHGYTSNGETELSLSLFKE-LMLSGARLRSSTLVSLVPVSGHLML 337
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
+ +HG+ ++S + VST L Y+ IE+AR +FD PE+ L SWN++IS
Sbjct: 338 I---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394
Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
YTQ +A+ L+ M+ + + T+ C+LS+CA +GAL++G ++H + F S
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454
Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
+YV AL+ MYAKCG++ A +F M K++ ++WN+MI GYG+HG+G EA++ F +ML
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514
Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
+G P +TFL +L CSH GLV+EG E F+ M+ RY +P +KHY C+VD+ GRAG L+
Sbjct: 515 SGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQ 574
Query: 345 KALEVINTSS--PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
+AL+ I S P V W TLLG+C+IH++ + + L +L+ + G +VLL+ I+
Sbjct: 575 RALQFIEAMSIEPGSSV-WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIH 633
Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
+ ++ A R+ K + PG++ IEIG H F D+SHP IY KLE++
Sbjct: 634 SADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLE 693
Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
+ + GY + E+ +A+ E+ E HSE+LAIAFGL T GT +RI+KNLR
Sbjct: 694 GKMREAGY-QPETELALHDVEEEE-RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRV 751
Query: 522 -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S R ++VRD R+HHF+DG+CSCGDYW
Sbjct: 752 CLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 197/512 (38%), Positives = 304/512 (59%)
Query: 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
+WNS+I+A+ + PL+AI + M ++ + +PD T ++ + C+ + GF
Sbjct: 315 SWNSIIKAYELNEQPLRAISLFQEMRLSRI-QPDCLTLISLASILSQLGDIRACRSVQGF 373
Query: 115 VIRSG-YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173
+R G + + + ++ YA G++++AR+VF+ +P D++SWN+IIS Y Q F E
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE 433
Query: 174 ALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232
A+++Y M E ++ + T V +L +C+ GAL G+ LH + G V+V +L
Sbjct: 434 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 493
Query: 233 DMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292
DMY KCG L+ A +F ++ + + + WN++I +G HG G++A+ FK+ML G PD I
Sbjct: 494 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 553
Query: 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352
TF+ LL CSH GLV+EG F MM + Y + P +KHYGC+VD+YGRAG+LE AL+ I +
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613
Query: 353 SS-PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411
S D +W LL +C++H NV++G+IA ++L ++E G +VLL+ +YA EGV
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 673
Query: 412 ARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYT 471
R + G++ TPGWS +E+ N+V F +++HP + +YR+L + + K IGY
Sbjct: 674 DEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYV 733
Query: 472 KDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------SIAY 525
D V E E HSE+LAIAF L TP T++RI KNLR S+
Sbjct: 734 PDHRFVLQDVEDDEK--EHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTK 791
Query: 526 ------SRDLIVRDRVRYHHFRDGLCSCGDYW 551
R++IVRD R+HHF++G+CSCGDYW
Sbjct: 792 FISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 203/521 (38%), Positives = 309/521 (59%)
Query: 45 FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
F + P +NS+ R +++ +PL+ + +L + PD +TF LKAC KA
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGIL-PDNYTFPSLLKACAVAKA 144
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
L + ++LH ++ G + V V L+ Y +++AR VFD + E +V +N++I+
Sbjct: 145 LEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITG 204
Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224
Y + + EAL L+ M+ + + + TL+ +LSSCA +G+L++G ++H+ A + F +
Sbjct: 205 YARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY 264
Query: 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284
V V AL+DM+AKCG+LD A +F +MR +D +W++MIV Y HG+ ++++ F++M
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRS 324
Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
PD ITFLGLL CSH G VEEG +YF MVS++ + P IKHYG +VDL RAG LE
Sbjct: 325 ENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLE 384
Query: 345 KALEVINTS--SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402
A E I+ SP+ P+LWR LL +C H N+++ E + + +L+ + GDYV+L+ +Y
Sbjct: 385 DAYEFIDKLPISPT-PMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLY 443
Query: 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIM 462
A K E V RK++K PG S IE+ N VH+F D ++R L+E++
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503
Query: 463 HRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR- 521
K GY D S+V V + ++ E + YHSEKLAI FGL TP GT++R+VKNLR
Sbjct: 504 KELKLSGYVPDTSMV-VHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRV 562
Query: 522 -----------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S+ + R +++RD R+HHF DG CSCGD+W
Sbjct: 563 CRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
|
|
| TAIR|locus:2079187 AT3G47530 "AT3G47530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 212/526 (40%), Positives = 302/526 (57%)
Query: 45 FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
F+Q NP N++IRAF+ S +P + + + S + + +F LK C +
Sbjct: 69 FSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGD 128
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
L ++HG + G+ ++ T LM Y+ A VFD +P+RD VSWN + SC
Sbjct: 129 LLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSC 188
Query: 165 YTQASFHLEALKLYERMRFEDVGL---DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221
Y + + L L+++M+ + G DG T + L +CA++GAL+ G +H E G
Sbjct: 189 YLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGL 248
Query: 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQ 281
++ + N LV MY++CG++D A+ VF MR+R+V+SW ++I G ++G G EAI F +
Sbjct: 249 SGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNE 308
Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS-RYNLKPGIKHYGCLVDLYGRA 340
ML G P+ T GLL CSH GLV EG+ +F M S + +KP + HYGC+VDL GRA
Sbjct: 309 MLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRA 368
Query: 341 GKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399
L+KA +I + D +WRTLLG+C++H +VE+GE + +L++L+A AGDYVLL
Sbjct: 369 RLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLL 428
Query: 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLE 459
Y+ E V R L+K I T PG S IE+ VH+F+VDD SHP + IY+ L
Sbjct: 429 NTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLA 488
Query: 460 EIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSA--YHSEKLAIAFGLATTPDGTSLRIV 517
EI + K GY E + SE+ EK A YHSEKLAIAFG+ TP GT++R+
Sbjct: 489 EINQQLKIAGYVA-EITSELHNLESEE--EKGYALRYHSEKLAIAFGILVTPPGTTIRVT 545
Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
KNLR S Y R +IVRDR R+HHF+ G CSC D+W
Sbjct: 546 KNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 195/528 (36%), Positives = 308/528 (58%)
Query: 45 FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD-----TFTFTFTLKAC 99
F++I +W S+IR + + + L A+ + +L+ D + + AC
Sbjct: 134 FDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISAC 193
Query: 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV--IEAARSVFDNMPERDLVS 157
RV A + +H FVI+ G++R V V L+ YA G + AR +FD + ++D VS
Sbjct: 194 SRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253
Query: 158 WNSIISCYTQASFHLEALKLYERM-RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216
+NSI+S Y Q+ EA +++ R+ + + V + TL +L + +H GAL +G +H
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQV 313
Query: 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAI 276
MG + V VG +++DMY KCG +++A F RM+ ++V SW +MI GYG+HG +A+
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373
Query: 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336
F M+ +G P+ ITF+ +L CSH GL EG +F+ M R+ ++PG++HYGC+VDL
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433
Query: 337 YGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395
GRAG L+KA ++I D ++W +LL +C+IH+NVE+ EI++ L +L++++ G Y
Sbjct: 434 LGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYY 493
Query: 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIY 455
+LL+ IYA + V R R ++K+ G+ PG+S +E+ +VH F++ D+ HP + IY
Sbjct: 494 MLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIY 553
Query: 456 RKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLR 515
L E+ + GY + S +V E+ E + HSEKLAIAFG+ T G+++
Sbjct: 554 EFLAELNRKLLEAGYVSNTS--SVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVN 611
Query: 516 IVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
+VKNLR S R+ +VRD R+HHF+DG CSCGDYW
Sbjct: 612 VVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:2034456 AT1G31920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 196/522 (37%), Positives = 312/522 (59%)
Query: 45 FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
F I +P T +N++IR + +S +A+ +YN M+ + PD FT+ LKAC R+K+
Sbjct: 89 FRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRG-NEPDNFTYPCLLKACTRLKS 147
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
+ + +++HG V + G E V V +L+ Y G +E + +VF+ + + SW+S++S
Sbjct: 148 IREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSA 207
Query: 165 YTQASFHLEALKLYERMRFE-DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE 223
E L L+ M E ++ + +V L +CA+ GALN+G+ +H
Sbjct: 208 RAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISEL 267
Query: 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283
++ V +LVDMY KCG LD A +F +M KR+ L++++MI G +HG G+ A+ F +M+
Sbjct: 268 NIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI 327
Query: 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343
G PD + ++ +L CSH GLV+EG F M+ ++P +HYGCLVDL GRAG L
Sbjct: 328 KEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLL 387
Query: 344 EKALEVINTSSP--SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
E+ALE I S P + V+WRT L C++ +N+E+G+IA + L++L + + GDY+L++ +
Sbjct: 388 EEALETIQ-SIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNL 446
Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
Y+ + + VARTR I G+K TPG+S +E+ + H+FV D+SHP IY+ L ++
Sbjct: 447 YSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQM 506
Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
+ KF GY+ D + + ++ E+ E+ HS+K+AIAFGL TP G+ ++I +NLR
Sbjct: 507 EWQLKFEGYSPDLTQILLN-VDEEEKKERLKG-HSQKVAIAFGLLYTPPGSIIKIARNLR 564
Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S+ Y R+++VRDR R+H F+ G CSC DYW
Sbjct: 565 MCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 194/522 (37%), Positives = 308/522 (59%)
Query: 45 FNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA 104
F++I +WN++I +A++ + +A+ + M+ ++ RPD T + AC + +
Sbjct: 223 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVVSACAQSGS 281
Query: 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISC 164
+ +++H ++ G+ + + L+ Y+ G +E A +F+ +P +D++SWN++I
Sbjct: 282 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG 341
Query: 165 YTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM--GFV 222
YT + + EAL L++ M + T++ +L +CAH+GA+++G ++H + G
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401
Query: 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282
+ + +L+DMYAKCG++++A VF+ + + + SWN+MI G+ +HGR D + F +M
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461
Query: 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342
G PD ITF+GLL CSH G+++ G F M Y + P ++HYGC++DL G +G
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGL 521
Query: 343 LEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401
++A E+IN D V+W +LL +CK+H NVE+GE +NL+++E + G YVLL+ I
Sbjct: 522 FKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNI 581
Query: 402 YACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461
YA VA+TR L+ G+K PG S IEI + VH+F++ DK HP IY LEE+
Sbjct: 582 YASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 641
Query: 462 MHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR 521
+ G+ D S V E++ E + +HSEKLAIAFGL +T GT L IVKNLR
Sbjct: 642 EVLLEKAGFVPDTS--EVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLR 699
Query: 522 ------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
S Y R++I RDR R+HHFRDG+CSC DYW
Sbjct: 700 VCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LXY5 | PP284_ARATH | No assigned EC number | 0.5606 | 0.9800 | 0.9294 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 551 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-131 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-118 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-52 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-41 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-36 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 8e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 402 bits (1035), Expect = e-131
Identities = 208/571 (36%), Positives = 314/571 (54%), Gaps = 47/571 (8%)
Query: 12 LNKARQAHEIHGEWLLNSYAISVSSSLSYAQL------------LFNQIQNPQTQAWNSL 59
L R E+HG + +A+ VS S Q+ +F++++ +W ++
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG 119
I + ++ P +A+ Y M ++S PD T L AC + L+ +LH R G
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVS-PDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIIS--CYTQASFHLEALKL 177
VVV+ L+ Y+ I+ A VF N+PE+D++SW SII+ F EAL
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF--EALIF 477
Query: 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMG--IFLHRIACEMGFVESVYVGNALVDMY 235
+ +M + + TL+ LS+CA +GAL G I H + +GF ++ NAL+D+Y
Sbjct: 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF--DGFLPNALLDLY 534
Query: 236 AKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL 295
+CG ++ A+ F+ ++DV+SWN ++ GY HG+G A+ F +M+ +G +PD +TF+
Sbjct: 535 VRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS- 354
LLC CS G+V +G+EYFH M +Y++ P +KHY C+VDL GRAGKL +A IN
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653
Query: 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414
DP +W LL +C+IHR+VE+GE+A +++ +L+ S G Y+LL +YA + VAR
Sbjct: 654 TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713
Query: 415 RKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDE 474
RK ++ NG+ PG SW+E+ +VH F+ DD+SHP I LE + K G E
Sbjct: 714 RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773
Query: 475 SLVAVSGSSSEDFLEKSSAY----HSEKLAIAFGLATTPDGTSLRIVKNL---------- 520
SSS D +E S HSE+LAIAFGL T G + + KNL
Sbjct: 774 -------SSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTV 826
Query: 521 RSIAYS--RDLIVRDRVRYHHFRDGLCSCGD 549
+ I+ R++ VRD ++HHF+DG CSCGD
Sbjct: 827 KFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 365 bits (939), Expect = e-118
Identities = 180/526 (34%), Positives = 283/526 (53%), Gaps = 20/526 (3%)
Query: 41 AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
A+ LF+++ +W ++I + + +A F + S + TF L+A
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREA-FALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
+ + Q+LH V+++G VS L+ Y+ G IE AR VFD MPE+ V+WNS
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS 295
Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
+++ Y + EAL LY MR V +D FT ++ + + L H G
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 221 FVESVYVGN-ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFF 279
F V N ALVD+Y+K G ++ A VF RM +++++SWN++I GYG HGRG +A+ F
Sbjct: 356 F-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414
Query: 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339
++M+ G P+ +TFL +L C + GL E+G E F M + +KP HY C+++L GR
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
Query: 340 AGKLEKALEVINTSSPSDPV--LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397
G L++A +I +P P +W LL +C+IH+N+E+G +A + L + +YV+
Sbjct: 475 EGLLDEAYAMIR-RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533
Query: 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRK 457
L +Y + + A+ + +K G+ P +WIE+ Q H F D+ HP + IY+K
Sbjct: 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQK 593
Query: 458 LEEIMHRAKFIGYTKDESLVAVSGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIV 517
L+E+M GY +E+ + E+ + S YHSEKLAIAFGL T + T L+I
Sbjct: 594 LDELMKEISEYGYVAEENELLPDVDEDEE--KVSGRYHSEKLAIAFGLINTSEWTPLQIT 651
Query: 518 KNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSCGDYW 551
++ R ++ R+++VRD R+HHF+ G CSCGDYW
Sbjct: 652 QSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 3e-52
Identities = 109/329 (33%), Positives = 179/329 (54%), Gaps = 12/329 (3%)
Query: 41 AQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE 100
A+L+F+++ +WN++I + ++ L+ + + M S+ PD T T + ACE
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD-PDLMTITSVISACE 299
Query: 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160
+ +E+HG+V+++G+ V V +L++ Y + G A VF M +D VSW +
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359
Query: 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220
+IS Y + +AL+ Y M ++V D T+ +LS+CA +G L++G+ LH +A G
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFK 280
+ V V NAL++MY+KC +D A VF + ++DV+SW S+I G ++ R EA+ FF+
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479
Query: 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----CLVDL 336
QML+ P+S+T + L C+ G + G E + + L+ GI G L+DL
Sbjct: 480 QMLLT-LKPNSVTLIAALSACARIGALMCGKE-----IHAHVLRTGIGFDGFLPNALLDL 533
Query: 337 YGRAGKLEKALEVINTSSPSDPVLWRTLL 365
Y R G++ A N S D V W LL
Sbjct: 534 YVRCGRMNYAWNQFN-SHEKDVVSWNILL 561
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 4e-51
Identities = 107/322 (33%), Positives = 170/322 (52%), Gaps = 3/322 (0%)
Query: 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGF 114
+WN L+ +A++ +A+ Y+ ML A + RPD +TF L+ C + L + +E+H
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDLARGREVHAH 212
Query: 115 VIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEA 174
V+R G+E V V L+ Y G + +AR VFD MP RD +SWN++IS Y + LE
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272
Query: 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234
L+L+ MR V D T+ ++S+C +G +G +H + GF V V N+L+ M
Sbjct: 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332
Query: 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294
Y G+ A VFSRM +D +SW +MI GY +G D+A+ + M PD IT
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354
+L C+ G ++ GV+ H + R L + L+++Y + ++KALEV +
Sbjct: 393 ASVLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
Query: 355 PSDPVLWRTLL-GSCKIHRNVE 375
D + W +++ G +R E
Sbjct: 452 EKDVISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 5e-41
Identities = 95/317 (29%), Positives = 158/317 (49%), Gaps = 8/317 (2%)
Query: 91 TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM 150
T+ ++AC +K++ + ++ V SG+E + ++ + G++ AR +FD M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 151 PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG-FTLVCLLSSCAHVGALNMG 209
PER+L SW +II A + EA L+ R +ED T V +L + A +G+ G
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALF-REMWEDGSDAEPRTFVVMLRASAGLGSARAG 243
Query: 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVH 269
LH + G V +V AL+DMY+KCG+++ A CVF M ++ ++WNSM+ GY +H
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
G +EA+ + +M +G D TF ++ S L+E + H + R I
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA-HAGLIRTGFPLDIVA 362
Query: 330 YGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389
LVDLY + G++E A V + + + W L+ H G A++ ++ A
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH---GRGTKAVEMFERMIA 419
Query: 390 AS-AGDYV-LLATIYAC 404
A ++V LA + AC
Sbjct: 420 EGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 9e-36
Identities = 92/312 (29%), Positives = 137/312 (43%), Gaps = 2/312 (0%)
Query: 57 NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI 116
NS +RA QA+ M + D + + CE +A+ + + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVP-VDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 117 RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176
S V + ++ + G + A VF MPERDL SWN ++ Y +A + EAL
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 177 LYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236
LY RM + V D +T C+L +C + L G +H GF V V NAL+ MY
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 237 KCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLG 296
KCG++ SA VF RM +RD +SWN+MI GY +G E + F M PD +T
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356
++ C G G E H V + + L+ +Y G +A +V +
Sbjct: 294 VISACELLGDERLGRE-MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 357 DPVLWRTLLGSC 368
D V W ++
Sbjct: 353 DAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 8e-11
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 427 PGWSWIEIGNQVHKFVVDDKSHP---DADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSS 483
PG W E K + D SHP + K+E ++ K IG+ D +
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTSKEELFQRIKVEGVVPETKEIGHDVD-AEEFRDNGI 55
Query: 484 SEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR-------------SIAYSRDLI 530
L A H+EK A+A+GL TT RI+K L+ + R++I
Sbjct: 56 KGKLL----ASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 531 VRDRVRYHHFR 541
VRD R+HHF+
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303
DV+++N++I GY G+ +EA+ F +M G P+ T+ L+ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 54/222 (24%)
Query: 196 LLSSCAHVGALNMGIFLHRIACEM---GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252
L+S+CA G ++ + + EM G +V+ AL+D A+ G + AF + MR
Sbjct: 478 LISTCAKSGKVDA---MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 253 KRDV----LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP---DSITFLGLLCGCSHQG 305
++V + +N++I G G D A +M A HP D IT L+ C++ G
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM-KAETHPIDPDHITVGALMKACANAG 593
Query: 306 LVEEGVEYFHMMVSRYNLK-----------------------------------PGIKHY 330
V+ E + M+ YN+K P +
Sbjct: 594 QVDRAKEVYQMI-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 331 GCLVDLYGRAGKLEKALEVINTSS----PSDPVLWRTLLGSC 368
LVD+ G AG L+KA E++ + V + +L+G+C
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291
++N++I G GR +EA+ FK+M G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 43/204 (21%), Positives = 94/204 (46%), Gaps = 7/204 (3%)
Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGALNMGIF 211
D V +N++IS Q+ A + M+ E + D T+ L+ +CA+ G ++
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV----LSWNSMIVGYG 267
++++ E + V V+ ++ G+ D A ++ M+K+ V + +++++ G
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327
G D+A + G ++++ L+ CS+ ++ +E + + S L+P +
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTV 719
Query: 328 KHYGCLVDLYGRAGKLEKALEVIN 351
L+ +L KALEV++
Sbjct: 720 STMNALITALCEGNQLPKALEVLS 743
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344
AG D + L+ C+ G V+ E FH MV+ ++ + +G L+D RAG++
Sbjct: 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVA 524
Query: 345 KALE----VINTSSPSDPVLWRTLLGSCKIHRNVEIGEI--AMKNLVQLEAASA---GDY 395
KA + + + D V++ L+ +C + G + A L +++A + D+
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACG-----QSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 396 VLL-ATIYACTKDEEGVARTR---KLIKSNGIKTTP 427
+ + A + AC + V R + ++I IK TP
Sbjct: 580 ITVGALMKACANAGQ-VDRAKEVYQMIHEYNIKGTP 614
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287
++NS+I GY G+ +EA+ FK+M G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKR----DVLSWNSMIVGY 266
N L+D Y K G ++ A +F+ M+KR +V +++ +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202
D+V++N++I Y + EALKL+ M+ + + +T L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 156 VSWNSIISCYTQASFHLEALKLYERMRFEDV 186
V++NS+IS Y +A EAL+L++ M+ + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPER----DLVSWNSIISCY 165
VV L+ GY G +E A +F+ M +R ++ +++ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.46 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.11 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.11 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.1 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.07 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.01 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.01 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.93 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.93 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.86 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.6 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.47 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.46 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.38 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.29 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.21 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.91 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.87 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.84 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.78 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.76 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.69 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.62 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.62 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.62 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.54 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.54 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.52 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.43 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.39 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.37 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.28 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.27 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.27 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.24 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.23 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.22 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.21 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.19 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.15 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.13 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.12 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.11 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.09 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.06 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.01 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.01 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.95 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.93 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.9 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.79 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.75 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.73 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.72 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.68 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.39 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.38 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.2 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.15 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.03 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.85 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.82 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.69 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.65 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.58 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.57 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.44 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.41 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.38 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.37 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.35 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.32 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.2 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.11 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.11 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.09 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.02 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.99 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.94 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.68 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.56 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.28 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.04 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.93 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.93 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.91 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.55 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.41 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.21 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.98 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.34 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.34 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.86 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.85 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.83 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.66 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.25 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.95 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.44 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.22 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.95 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.94 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.94 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.51 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.14 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.68 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.52 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.45 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.38 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.31 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.63 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.52 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.37 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 87.12 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.75 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.72 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.61 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.59 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.39 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.37 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.27 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.48 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.45 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 85.35 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.29 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.22 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.06 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.51 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.41 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 84.36 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.94 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.67 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.54 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.18 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.16 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.92 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.88 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.83 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 82.22 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.71 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.22 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.96 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.14 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-115 Score=930.39 Aligned_cols=542 Identities=33% Similarity=0.599 Sum_probs=535.0
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 81 (551)
++++|..+. +.|+.||+.+||.|+++|+++ |++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+
T Consensus 142 a~~l~~~m~--~~g~~~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 142 VKAVYWHVE--SSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHH--HhCCCcchHHHHHHHHHHhcC--CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578898886 789999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHH
Q 048830 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161 (551)
Q Consensus 82 ~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 161 (551)
.|+. ||..||+.++.+|++.|..+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|+++|+++||+|
T Consensus 218 ~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l 296 (697)
T PLN03081 218 DGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296 (697)
T ss_pred hCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 241 (551)
|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..+.+.|+.||..++++|+++|+++|++
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 242 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+
T Consensus 377 ~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 377 EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
|+.|+..+|++|+++|++.|++++|.+++++ |+. +..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~-~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRR-APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 9999999999999999999999999999999 776 9999999999999999999999999999999999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCccCCCccccc
Q 048830 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~ 479 (551)
++|++.|+|++|.++++.|+++|+.+.||+|||++++++|.|++||.+||+.++|++.+.++..+|++.||.||+.+++|
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~ 615 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP 615 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHhhhhhhhhHHHHHHHHHhcCCCCCCeeeEecccc------------cccccceEEEecCCcccccCCCcCCC
Q 048830 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547 (551)
Q Consensus 480 ~~~~~~~~~~~~~~~~se~la~~~~~~~~~~~~~~~i~kn~r------------s~~~~r~i~~~d~~~~h~f~~g~csc 547 (551)
|+ ++++++..+.+||||||+|||||+||||+||||+|||| |+++||+|||||++|||||+||+|||
T Consensus 616 ~~--~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc 693 (697)
T PLN03081 616 DV--DEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSC 693 (697)
T ss_pred cc--cHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccc
Confidence 99 99999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCC
Q 048830 548 GDYW 551 (551)
Q Consensus 548 ~~~w 551 (551)
||||
T Consensus 694 ~d~w 697 (697)
T PLN03081 694 GDYW 697 (697)
T ss_pred cccC
Confidence 9999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-109 Score=907.39 Aligned_cols=537 Identities=37% Similarity=0.673 Sum_probs=527.5
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 81 (551)
|+++|+.+. +.|+.||+.+||+||.+|+++ |++++|.++|++|+.||+++||++|.+|.+.|++++|+++|++|.+
T Consensus 307 a~~l~~~~~--~~g~~~d~~~~n~Li~~y~k~--g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVV--KTGFAVDVSVCNSLIQMYLSL--GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHH--HhCCccchHHHHHHHHHHHhc--CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 678999987 889999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHH
Q 048830 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161 (551)
Q Consensus 82 ~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 161 (551)
.|+. ||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+|
T Consensus 383 ~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~m 461 (857)
T PLN03077 383 DNVS-PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461 (857)
T ss_pred hCCC-CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 241 (551)
|.+|.+.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+.|+.++..++|+|+++|+++|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 242 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+
T Consensus 541 ~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 541 NYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999998778
Q ss_pred CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
|+.|+..+|++|+++|++.|++++|.+++++ |+. |..+|++|+.+|+.+|+.+.++.+.+++++++|+++..|..|+
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINK-MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 9999999999999999999999999999999 876 9999999999999999999999999999999999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCccCCCccccc
Q 048830 400 TIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAV 479 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~ 479 (551)
++|+..|+|++|.++++.|+++|++++||+|||++++++|.|.+||.+||+.++|+..|+++..+|++.||.||+..++
T Consensus 699 n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~- 777 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM- 777 (857)
T ss_pred HHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCCChHHhhhhhhhhHHHHHHHHHhcCCCCCCeeeEecccc------------cccccceEEEecCCcccccCCCcCCC
Q 048830 480 SGSSSEDFLEKSSAYHSEKLAIAFGLATTPDGTSLRIVKNLR------------SIAYSRDLIVRDRVRYHHFRDGLCSC 547 (551)
Q Consensus 480 ~~~~~~~~~~~~~~~~se~la~~~~~~~~~~~~~~~i~kn~r------------s~~~~r~i~~~d~~~~h~f~~g~csc 547 (551)
++ +||+||..+++||||||+|||||+||||+||||+|||| |++++|||||||++|||||+||+|||
T Consensus 778 ~~--~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc 855 (857)
T PLN03077 778 DE--IEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSC 855 (857)
T ss_pred cc--cHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccC
Confidence 55 67889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CC
Q 048830 548 GD 549 (551)
Q Consensus 548 ~~ 549 (551)
||
T Consensus 856 ~d 857 (857)
T PLN03077 856 GD 857 (857)
T ss_pred CC
Confidence 98
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=560.00 Aligned_cols=418 Identities=27% Similarity=0.451 Sum_probs=406.2
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 81 (551)
|+++|+.++ +.|+.||+.++|+||.+|+++ |++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|..
T Consensus 206 ~~~~~~~~~--~~g~~~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 206 GREVHAHVV--RFGFELDVDVVNALITMYVKC--GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred HHHHHHHHH--HcCCCcccchHhHHHHHHhcC--CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 678999987 889999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHH
Q 048830 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSI 161 (551)
Q Consensus 82 ~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l 161 (551)
.|+. ||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||+|
T Consensus 282 ~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 282 LSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred cCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 241 (551)
|.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++|+|+++|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 242 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~- 518 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT- 518 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999986 59999999999999999999999999999999876
Q ss_pred CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc-CCCcchHHHHHH
Q 048830 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE-AASAGDYVLLAT 400 (551)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~ 400 (551)
|+.++..++++|+++|+++|++++|.++|++ ++.|..+|++++.+|.++|+.++|..+|++|.+.+ .+|..+|..++.
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHh-cCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 9999999999999999999999999999999 66699999999999999999999999999999876 345789999999
Q ss_pred HhhhcCChhHHHHHHHHHH-hCCCccCC
Q 048830 401 IYACTKDEEGVARTRKLIK-SNGIKTTP 427 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~-~~g~~~~~ 427 (551)
+|++.|++++|.++|+.|+ +.|+.|+.
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999999998 68998864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-58 Score=494.48 Aligned_cols=419 Identities=16% Similarity=0.214 Sum_probs=386.9
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ----NPQTQAWNSLIRAFAQSLSPLQAIFYYN 77 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 77 (551)
|.++|..+. +.|+.||+.+||.||.+|+++ |++++|.++|++|. .||..+||+||.+|++.|++++|+++|+
T Consensus 456 A~~lf~~M~--~~Gl~pD~~tynsLI~~y~k~--G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 456 ALRVLRLVQ--EAGLKADCKLYTTLISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred HHHHHHHHH--HcCCCCCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 567888886 889999999999999999999 99999999999997 6899999999999999999999999999
Q ss_pred HHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---
Q 048830 78 HMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR--SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--- 152 (551)
Q Consensus 78 ~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--- 152 (551)
+|...|+. ||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|++++|.++|++|.+
T Consensus 532 ~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 532 IMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999998 9999999999999999999999999999987 57899999999999999999999999999999975
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 048830 153 -RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231 (551)
Q Consensus 153 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 231 (551)
|+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|++|
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 307 (551)
|.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999999995 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCccchhhhhHHHh----hcC-------------------CHHHHHHHHhhcCCC----CHHH
Q 048830 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG----RAG-------------------KLEKALEVINTSSPS----DPVL 360 (551)
Q Consensus 308 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~~~~----~~~~ 360 (551)
++|.++|++|.+. |+.||..+|++|+.++. +++ ..++|..+|++|... |..+
T Consensus 771 e~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 771 DVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999776 99999999999997643 222 246789999884333 9999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhh-cCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCc
Q 048830 361 WRTLLGSCKIHRNVEIGEIAMKNLVQL-EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPG 428 (551)
Q Consensus 361 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 428 (551)
|+.++.++...+..+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|...|+.|+..
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999998888888888888888776543 355678999999988432 368999999999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=492.30 Aligned_cols=418 Identities=17% Similarity=0.224 Sum_probs=387.7
Q ss_pred hhhhhhHhhhhccC-CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048830 3 LKKHARYVGLNKAR-QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLM 81 (551)
Q Consensus 3 ~~~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 81 (551)
.+++..+. +.|+ .++..+++.++..|.+. |.+++|..+|+.|+.||..+||.+|.+|++.|++++|.++|++|.+
T Consensus 390 l~Lfd~M~--~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 390 IDLLEDME--KRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHHHHHH--hCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 45666665 5664 57888889999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC----CChhH
Q 048830 82 ASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE----RDLVS 157 (551)
Q Consensus 82 ~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~ 157 (551)
.|+. ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+
T Consensus 466 ~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 466 AGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred cCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999964 89999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh--CCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 048830 158 WNSIISCYTQASFHLEALKLYERMRF--EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMY 235 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 235 (551)
||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|+++|.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 99999999999999999999999976 6789999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 236 AKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999997 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
++|++|.+. ++.||..+|++||.+|++.|++++|.++|++ |.. |..+|++++.+|.+.|++++|..++++|.+
T Consensus 705 ~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e-M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 705 ELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSE-MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999765 9999999999999999999999999999998 432 999999999999999999999999999998
Q ss_pred hc-CCCcchHHHHHHHhh----hcC-------------------ChhHHHHHHHHHHhCCCccCC
Q 048830 387 LE-AASAGDYVLLATIYA----CTK-------------------DEEGVARTRKLIKSNGIKTTP 427 (551)
Q Consensus 387 ~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~a~~~~~~m~~~g~~~~~ 427 (551)
.+ ..+..+|..|+.+|. +++ ..++|..+|++|.+.|+.|+.
T Consensus 783 ~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 783 DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 76 345677888876643 222 236799999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=480.61 Aligned_cols=407 Identities=23% Similarity=0.337 Sum_probs=375.7
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcC-CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS-LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN 129 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 129 (551)
++..+|+++|.+|.+.|++++|+++|+.|...+ .. ||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 466799999999999999999999999999875 55 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHH
Q 048830 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 209 (551)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048830 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289 (551)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (551)
.+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHH
Q 048830 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSC 368 (551)
Q Consensus 290 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~ 368 (551)
|..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++|+++|+++|++++|.++|++ |+. |..+|++|+.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDR-MPRKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CCCCCeeeHHHHHHHH
Confidence 9999999999999999999999999999876 9999999999999999999999999999999 666 999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhhc-CCCcchHHHHHHHhhhcCChhHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEEecCC
Q 048830 369 KIHRNVEIGEIAMKNLVQLE-AASAGDYVLLATIYACTKDEEGVARTRKLIKS-NGIKTTPGWSWIEIGNQVHKFVVDDK 446 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~~~~~~~ 446 (551)
.++|+.++|.++|++|.+.+ .+|..+|..++.+|++.|+.++|.++|+.|.+ .|+.|+...... ++....
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~~l~ 473 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIELLG 473 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHHHHH
Confidence 99999999999999999876 44688999999999999999999999999975 688876432110 112223
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCccCCCc
Q 048830 447 SHPDADMIYRKLEEIMHRAKFIGYTKDES 475 (551)
Q Consensus 447 ~~~~~~~~~~~l~~l~~~~~~~g~~p~~~ 475 (551)
..+..+++.+ .++++++.|+..
T Consensus 474 r~G~~~eA~~-------~~~~~~~~p~~~ 495 (697)
T PLN03081 474 REGLLDEAYA-------MIRRAPFKPTVN 495 (697)
T ss_pred hcCCHHHHHH-------HHHHCCCCCCHH
Confidence 3444444443 345567888753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-26 Score=253.25 Aligned_cols=397 Identities=13% Similarity=0.058 Sum_probs=314.8
Q ss_pred cCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh
Q 048830 15 ARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT 91 (551)
Q Consensus 15 g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~ 91 (551)
..++++.+++.+...|... |++++|...|+++. +.+...+..+...+...|++++|...|+++....+ .+..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~ 535 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGK--GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP--KNLRA 535 (899)
T ss_pred hCCCCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CcHHH
Confidence 3456788899999999999 99999999998753 44667788888889999999999999999988764 46778
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhc
Q 048830 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQA 168 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 168 (551)
+..+...+.+.|+.++|...+.++.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+..+|..+...|...
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 8888888888999999999998888764 55667778888889999999999998888764 4567888888888889
Q ss_pred CChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 048830 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVF 248 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 248 (551)
|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..++..+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998887653 3455667778888888888999988888888754 345677888888888888888888888
Q ss_pred HhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 048830 249 SRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325 (551)
Q Consensus 249 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 325 (551)
+.+.+ .+...+..+...+...|++++|...|+++... .|+..++..+..++.+.|++++|...++.+.+. .+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~ 768 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPN 768 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 88764 35667777888888888888888888888775 355566777778888888888888888887653 334
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
+...+..+...|...|++++|.+.|++++.. ++.+++.+...+...|+ ++|+..++++++..|+++..+..++.+|
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 6677777888888888888888888774433 77777888888877777 7788888888888888887777888888
Q ss_pred hhcCChhHHHHHHHHHHhCCC
Q 048830 403 ACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~g~ 423 (551)
...|++++|.++++++.+.+.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888887776554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=250.60 Aligned_cols=391 Identities=13% Similarity=0.013 Sum_probs=337.3
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l 95 (551)
+......++..|.+. |++++|..+++.+. +++..+|+.+...+...|++++|...|+++.+..+ .+...+..+
T Consensus 430 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l 505 (899)
T TIGR02917 430 LGRADLLLILSYLRS--GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANL 505 (899)
T ss_pred chhhHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHH
Confidence 345666788889999 99999999998775 34677899999999999999999999999988764 456677788
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChH
Q 048830 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHL 172 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 172 (551)
...+...|++++|.+.++.+.+.. +.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|+++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 888999999999999999998875 56778889999999999999999999988754 45567888999999999999
Q ss_pred HHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 173 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
+|+.+++++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999997643 5567788999999999999999999999998865 3457788889999999999999999999876
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccc
Q 048830 253 K---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329 (551)
Q Consensus 253 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 329 (551)
+ .+..+|..++..+...|++++|..+++.+.+.. +++...+..+...+...|++++|...|+.+.. ..|+..+
T Consensus 663 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 738 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQN 738 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchH
Confidence 4 467889999999999999999999999998875 55667788888899999999999999999875 3566677
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
+..++.++.+.|++++|.+.+++++.. +..++..+...|...|+.++|...|+++++..|+++..+..++.++...|
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 888999999999999999988874433 88899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 048830 407 DEEGVARTRKLIKSN 421 (551)
Q Consensus 407 ~~~~a~~~~~~m~~~ 421 (551)
+ ++|..+++++.+.
T Consensus 819 ~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 819 D-PRALEYAEKALKL 832 (899)
T ss_pred c-HHHHHHHHHHHhh
Confidence 9 8899999988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-26 Score=184.60 Aligned_cols=94 Identities=53% Similarity=0.849 Sum_probs=84.9
Q ss_pred ceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCccCCCccccccCCCChHHh--------hhhhhhhHHHH
Q 048830 428 GWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSEDFL--------EKSSAYHSEKL 499 (551)
Q Consensus 428 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~--------~~~~~~~se~l 499 (551)
||||+++ |.|++|+.+||+. ++..++...||.|++..++|++ +++++ +..+.+|||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~d~~~~~~~~~~HSEKl 67 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDV--DEEEKHDYDEEEKEESLCYHSEKL 67 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCc--hhhhhhhcccccchhhhhccHHHH
Confidence 7899876 9999999999988 4566778889999999999988 55544 66899999999
Q ss_pred HHHHHhcCCCCCCeeeEeccc-c------------cccccceEEEecCCcccccC
Q 048830 500 AIAFGLATTPDGTSLRIVKNL-R------------SIAYSRDLIVRDRVRYHHFR 541 (551)
Q Consensus 500 a~~~~~~~~~~~~~~~i~kn~-r------------s~~~~r~i~~~d~~~~h~f~ 541 (551)
|+||||+++ ||+||+ | |+++||+|+|||++|||||+
T Consensus 68 Aiafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 68 AIAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 999999998 999999 8 99999999999999999997
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=189.31 Aligned_cols=375 Identities=16% Similarity=0.120 Sum_probs=252.2
Q ss_pred cHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH-HHH
Q 048830 21 IHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT-FTL 96 (551)
Q Consensus 21 ~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~-~ll 96 (551)
.+|.-+.+.+-.. |++++|..+++.+. +..+..|..+..++...|+.+.|.+.|.+.++.+ |+..... .+.
T Consensus 117 e~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lg 191 (966)
T KOG4626|consen 117 EAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchh
Confidence 3555566666666 77777777777554 2356677777777777777777777777776654 5444332 223
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCC---hhHHHHHHHHHHhcCChHH
Q 048830 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD---LVSWNSIISCYTQASFHLE 173 (551)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~ 173 (551)
......|++++|...+.+.++.. +.=...|+.|...+-..|++..|+.-|++...-| ..+|-.|...|...+.+++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 33334577777777777666642 2224456777777777777777777777766522 3456677777777777777
Q ss_pred HHHHHHHhhhCCcccC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 174 ALKLYERMRFEDVGLD-GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 174 A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
|+..|.+.... .|+ ...+..+...|-..|.++.|...+++.++. .|+ +..|+.|..++-..|++.+|.+.+.+.
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 77777666543 343 345556666666777777777777777764 344 567777777777777777777777766
Q ss_pred CC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-
Q 048830 252 RK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG- 326 (551)
Q Consensus 252 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 326 (551)
.. ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|...+++.+ .++|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchH
Confidence 53 2455667777777777777777777777665 34443 556777777777777777777777765 56675
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
...|+.+...|-..|+.+.|.+.+.+++.. -....+.|...|...|+..+|+..|+.++++.|+.|.+|-.++.++.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 566777777777777777777777776665 34556777777777777777777777777777777777777777666
Q ss_pred hcCChhH
Q 048830 404 CTKDEEG 410 (551)
Q Consensus 404 ~~g~~~~ 410 (551)
--.+|.+
T Consensus 502 ~vcdw~D 508 (966)
T KOG4626|consen 502 IVCDWTD 508 (966)
T ss_pred HHhcccc
Confidence 6666655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=182.44 Aligned_cols=360 Identities=14% Similarity=0.104 Sum_probs=311.5
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-HHHHHH
Q 048830 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV-VSTNLM 131 (551)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li 131 (551)
..+|..+...+-..|++++|+.+++.|.+..+ -....|..+..++...|+.+.|.+.|...++. .|+.. ..+.+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 34688899999999999999999999999875 36778999999999999999999999999875 45544 344556
Q ss_pred HHHHhCCCHHHHHHHhccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC-HHHHHHHHHHHHhcCChH
Q 048830 132 RGYAANGVIEAARSVFDNMPE--RD-LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD-GFTLVCLLSSCAHVGALN 207 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~ 207 (551)
...-..|++++|...|.+..+ |. .++|+.|...+..+|+...|++.|++..+. .|+ ...|..+.+.|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 666778999999998877665 33 468999999999999999999999998764 455 347889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 208 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
.|...+..+.... +....++..|...|...|.++-|+..+++..+ | -..+|+.|..++...|++.+|...|.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998887753 23467888899999999999999999999875 3 357999999999999999999999999988
Q ss_pred cCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHH
Q 048830 285 AGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPV 359 (551)
Q Consensus 285 ~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 359 (551)
. .|+ ....+.|...+...|.++.|..+|.... .+.|. ....+.|...|-.+|++++|+.-|++++.. -..
T Consensus 349 l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 L--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred h--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 5 455 4788999999999999999999999886 45665 577889999999999999999999998877 567
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
.++.+...|...|+.+.|...+.+++..+|.-+.++..|+.+|-.+|+..+|+.-++...+....
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 78999999999999999999999999999999999999999999999999999999988774443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-19 Score=186.51 Aligned_cols=389 Identities=11% Similarity=-0.026 Sum_probs=285.6
Q ss_pred HHHHHHHHcCCCCChHHHHHHHhcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 048830 24 EWLLNSYAISVSSSLSYAQLLFNQIQ--NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101 (551)
Q Consensus 24 ~~li~~~~~~~~g~~~~A~~lf~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~ 101 (551)
..+-..|.+. |++++|...|++.. .|+...|..+..+|...|++++|++.++..++..+ .+...+..+..++..
T Consensus 131 k~~G~~~~~~--~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 131 KEKGNKAYRN--KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 3455667777 89999999998754 46777888888889999999999999999887764 355678888888899
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C--------------------------
Q 048830 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R-------------------------- 153 (551)
Q Consensus 102 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-------------------------- 153 (551)
.|++++|..-+..+...+-..+... ..++.-+........+...++.-+. +
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999887766654431112111 1111111111111222222221111 0
Q ss_pred -Ch---hHHHHHHHHH---HhcCChHHHHHHHHHhhhCC-ccc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 048830 154 -DL---VSWNSIISCY---TQASFHLEALKLYERMRFED-VGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES 224 (551)
Q Consensus 154 -~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 224 (551)
+. ..+..+...+ ...+++++|++.|++..+.+ ..| +...+..+...+...|++++|...++.+++.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00 0011111111 12368999999999998765 234 34567777788889999999999999998864 223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 301 (551)
...|..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 66888899999999999999999998754 467889999999999999999999999998853 23456677888899
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHH-------HHHHHHHHHHhc
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPV-------LWRTLLGSCKIH 371 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~-------~~~~ll~~~~~~ 371 (551)
.+.|++++|...|+...+. .+.+...+..+..+|...|++++|.+.|++++.. +.. .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999753 2235778899999999999999999999986654 111 122222334456
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
|++++|...++++++++|++...+..++.++...|++++|.+.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-19 Score=199.81 Aligned_cols=385 Identities=13% Similarity=0.057 Sum_probs=285.2
Q ss_pred HHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH----------
Q 048830 27 LNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT---------- 93 (551)
Q Consensus 27 i~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~---------- 93 (551)
-..+... |++++|...|++.. +.+...+..+...|.+.|++++|+..|++..+..+..++...+.
T Consensus 276 G~~~~~~--g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3456667 99999999998754 34778888999999999999999999999887764312211121
Q ss_pred --HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhc
Q 048830 94 --FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQA 168 (551)
Q Consensus 94 --~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 168 (551)
.....+.+.|++++|...++++++.. +.+...+..+..+|...|++++|++.|++..+ .+...+..+...|. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 22345678899999999999999874 45677788889999999999999999998764 34556666777664 4
Q ss_pred CChHHHHHHHHHhhhCCcc--------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 169 SFHLEALKLYERMRFEDVG--------LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
++.++|+.+++.+...... .....+..+...+...|++++|.+.++++++... .+..++..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 5788888888765432110 0112344556677788999999999999888652 346677788889999999
Q ss_pred HHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---------hHHHHHHHHhccCCHH
Q 048830 241 LDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI---------TFLGLLCGCSHQGLVE 308 (551)
Q Consensus 241 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~ 308 (551)
+++|...|+++.+ | +...+..+...+...|+.++|+..++.+......++.. .+..+...+...|+.+
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999988743 3 55556556666777888999988888764332222211 1234556677888888
Q ss_pred HHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 385 (551)
+|..+++. .+++...+..+...|.+.|++++|++.|++++.. +...+..++..+...|+.++|+..++++.
T Consensus 591 eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88887761 2335566777888888888999988888875544 78888888888888888999988888888
Q ss_pred hhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 386 QLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 386 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+..|+++..+..++.++...|++++|.++++++....
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888888999888888876543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-18 Score=194.96 Aligned_cols=391 Identities=13% Similarity=0.040 Sum_probs=312.0
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--CC---hhhHHHH------------HHHHHcCCChhHHHHHHHHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--PQ---TQAWNSL------------IRAFAQSLSPLQAIFYYNHML 80 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--~~---~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~ 80 (551)
.+...+..|...|.+. |++++|...|++..+ |+ ...|..+ ...+.+.|++++|+..|++..
T Consensus 301 ~~~~a~~~Lg~~~~~~--g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 301 KDSEALGALGQAYSQQ--GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3677888999999999 999999999987642 32 2223322 345778999999999999999
Q ss_pred HcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCC------
Q 048830 81 MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD------ 154 (551)
Q Consensus 81 ~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------ 154 (551)
...+ .+...+..+...+...|++++|.+.|+++++.. +.+...+..+...|. .++.++|..+++.++...
T Consensus 379 ~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 379 QVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 8865 466678888899999999999999999999864 445667777888775 467899999998876421
Q ss_pred ------hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCccc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 048830 155 ------LVSWNSIISCYTQASFHLEALKLYERMRFEDVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227 (551)
Q Consensus 155 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 227 (551)
...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...++.+++.. +.+...
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 224556778888999999999999999875 34 45567778889999999999999999998754 234555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC----CH---------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKR----DV---------LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 294 (551)
+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.++|+.+++. .+++...+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~ 606 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRID 606 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHH
Confidence 556666778899999999999988642 11 1123456678899999999999882 24455677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHh
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKI 370 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~ 370 (551)
..+...+.+.|+.++|...|+.+.+. .| +...+..++.+|...|++++|++.+++.+.. +...+..+..++..
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 78888999999999999999999863 45 6788899999999999999999999985443 67788888899999
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcc------hHHHHHHHhhhcCChhHHHHHHHHHH-hCCCcc
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAG------DYVLLATIYACTKDEEGVARTRKLIK-SNGIKT 425 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~ 425 (551)
.|++++|...++++++..|+++. .+..++.++...|++++|...+++.. ..|+.|
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999998766543 56667999999999999999998774 345543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-20 Score=183.73 Aligned_cols=297 Identities=14% Similarity=0.080 Sum_probs=168.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCC-C------hhHHHHHHHHHHhcCC
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER-D------LVSWNSIISCYTQASF 170 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~------~~~~~~li~~~~~~g~ 170 (551)
.+...|++++|...|.++.+.. +.+..++..+...|.+.|++++|..+++.+... + ...+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777776653 334556666667777777777777776665431 1 1345666666666677
Q ss_pred hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 171 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
+++|+.+|.++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 777777776665532 23445566666666666666666666666655432221100
Q ss_pred cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--cc
Q 048830 251 MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--IK 328 (551)
Q Consensus 251 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 328 (551)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~ 250 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSE 250 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHH
Confidence 00112333344444455555555555444421 112233444444555555555555555555432 121 23
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh--
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC-- 404 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 404 (551)
++..++.+|.+.|++++|.+.++++... +...+..++..+...|++++|..+++++++..|+++ .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 3445555555555555555555552222 333445666777777778888888888888888765 34444444432
Q ss_pred -cCChhHHHHHHHHHHhCCCccCCc
Q 048830 405 -TKDEEGVARTRKLIKSNGIKTTPG 428 (551)
Q Consensus 405 -~g~~~~a~~~~~~m~~~g~~~~~~ 428 (551)
.|+.+++..++++|.++++.++|.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC
Confidence 558888888888888888888876
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-19 Score=180.48 Aligned_cols=290 Identities=14% Similarity=0.044 Sum_probs=174.1
Q ss_pred HHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHhccC
Q 048830 30 YAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD---TFTFTFTLKACERVK 103 (551)
Q Consensus 30 ~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd---~~~~~~ll~~~~~~~ 103 (551)
+... |++++|...|.++. +.+..+|..+...+.+.|++++|+.+++.+...+.. ++ ...+..+...+...|
T Consensus 45 ~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLN--EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL-TREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhc--CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHCC
Confidence 3444 66777777776654 224445666666667777777777777766654321 11 134555666666667
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCC--C------hhHHHHHHHHHHhcCChHHHH
Q 048830 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER--D------LVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 104 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~------~~~~~~li~~~~~~g~~~~A~ 175 (551)
++++|..+|..+.+.. +++..+++.++.+|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 7777777776666542 344556666667777777777777766666431 1 113445555666667777777
Q ss_pred HHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 048830 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-- 253 (551)
Q Consensus 176 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 253 (551)
..|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.++.+|.+.|++++|.+.++++.+
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7776665532 2223455556666666677777777776666543322244556666667777777777776666542
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCCCCc
Q 048830 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH---QGLVEEGVEYFHMMVSRYNLKPGI 327 (551)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~ 327 (551)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.|++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 44445566666666677777777777666654 5666666666655443 34666666666666654 555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-18 Score=182.36 Aligned_cols=394 Identities=7% Similarity=-0.058 Sum_probs=301.8
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l 95 (551)
++...+-.+...... |+.++|.++|....+ .+...+..+...+...|++++|+.+|++.+...+ .+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~--g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWA--GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHH
Confidence 444556667777888 999999999987653 3455689999999999999999999999988764 456667788
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChH
Q 048830 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHL 172 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 172 (551)
...+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 888999999999999999999873 55666 88899999999999999999998875 3 4556777888888999999
Q ss_pred HHHHHHHHhhhCCcccCHH------HHHHHHHHHH-----hcCCh---HHHHHHHHHHHHh-CCCCchh-H-HHH---HH
Q 048830 173 EALKLYERMRFEDVGLDGF------TLVCLLSSCA-----HVGAL---NMGIFLHRIACEM-GFVESVY-V-GNA---LV 232 (551)
Q Consensus 173 ~A~~~~~~m~~~~~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~-~-~~~---li 232 (551)
+|+..++.... .|+.. ....++.... ..+++ ++|.+.++.+.+. ...|+.. . ... .+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99999987664 33320 1111222221 12233 6778888888764 2233221 1 111 13
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC---Hh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHhccC
Q 048830 233 DMYAKCGNLDSAFCVFSRMRKRD---VL-SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP---DSITFLGLLCGCSHQG 305 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g 305 (551)
.++...|++++|++.|+.+.+.+ +. .-..+...|...|++++|+..|+++....... .......+..++...|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 34467799999999999998632 11 22225778999999999999999987643111 1234566777889999
Q ss_pred CHHHHHHHHHHhHHhcC----------CCCC---ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 048830 306 LVEEGVEYFHMMVSRYN----------LKPG---IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCK 369 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~ 369 (551)
++++|..+++.+..... -.|+ ...+..+..++...|++++|+++++++... +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999975311 0122 123456778899999999999999985443 8999999999999
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..|++++|+..++++++++|+++..+..++..+...|++++|..+++.+.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-18 Score=180.66 Aligned_cols=348 Identities=10% Similarity=-0.031 Sum_probs=273.6
Q ss_pred CChHHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHH
Q 048830 36 SSLSYAQLLFNQIQNP------QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ 109 (551)
Q Consensus 36 g~~~~A~~lf~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~ 109 (551)
.+++--.-.|...++. +..-.--++..+.++|++++|+.+++..+...+. +...+..++.+....|+++.|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHH
Confidence 4555555555554421 2222344567788999999999999999888754 3444555566677799999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCc
Q 048830 110 ELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDV 186 (551)
Q Consensus 110 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 186 (551)
..++.+.+.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+.....
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 9999999874 55677888899999999999999999998865 3567888999999999999999999998876532
Q ss_pred ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHH
Q 048830 187 GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMI 263 (551)
Q Consensus 187 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 263 (551)
.+. ..+.. +..+...|++++|...++.+.+....++......+..++.+.|++++|...|++..+ .+...+..+.
T Consensus 176 ~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 176 PRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 222 22222 345788999999999999988765444455556667889999999999999998764 3677888899
Q ss_pred HHHHhcCChHH----HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHh
Q 048830 264 VGYGVHGRGDE----AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYG 338 (551)
Q Consensus 264 ~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 338 (551)
..|...|++++ |+..|++..... +.+...+..+...+...|++++|...+++..+. .| +...+..+..+|.
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 99999999986 899999998753 234567888899999999999999999998753 45 4566778899999
Q ss_pred hcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 339 RAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+.|++++|.+.+++++.. +...+..+..++...|+.++|...|+++++..|++.
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999985544 444455566788999999999999999999998864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-17 Score=177.41 Aligned_cols=326 Identities=11% Similarity=-0.014 Sum_probs=269.2
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHH
Q 048830 89 TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCY 165 (551)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 165 (551)
......++..+.+.|+++.|..++...+... +.+......++......|++++|...|+++.+ .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778889999999999999998874 44455666677778889999999999999875 3566788999999
Q ss_pred HhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048830 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245 (551)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 245 (551)
...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+......+ ...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998752 3345577788889999999999999999887765333 3333333 3478899999999
Q ss_pred HHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH----HHHHHHHh
Q 048830 246 CVFSRMRKR----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE----GVEYFHMM 317 (551)
Q Consensus 246 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~ 317 (551)
..++.+.+. +...+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++ |...|+.+
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987653 33445556778899999999999999999863 3345677788899999999986 89999988
Q ss_pred HHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 318 VSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 318 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.+ +.| +...+..+..++.+.|++++|...+++++.. +...+..+..++...|++++|...++++++.+|+++.
T Consensus 277 l~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 277 LQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred Hh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 75 456 5778899999999999999999999986654 7888899999999999999999999999999999887
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 394 DYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
.+..++.++...|++++|...+++..+..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77778999999999999999999876543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-16 Score=169.99 Aligned_cols=369 Identities=8% Similarity=-0.067 Sum_probs=285.4
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQI---QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l 95 (551)
+...+..+...+.+. |++++|..+|++. .+.+...+..+...+...|++++|+..+++.....+ .+.. +..+
T Consensus 48 ~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~l 122 (765)
T PRK10049 48 PARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP--DKAN-LLAL 122 (765)
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHH
Confidence 444688888999999 9999999999984 345677788899999999999999999999998864 3455 8888
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CCh------hHHHHHHHHHH--
Q 048830 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDL------VSWNSIISCYT-- 166 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~------~~~~~li~~~~-- 166 (551)
..++...|+.++|...++++.+.. +.+...+..+..++.+.|..+.|.+.++.... |+. .....++....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 888999999999999999999974 45666777788899999999999999998776 211 11222232222
Q ss_pred ---hcCCh---HHHHHHHHHhhhC-CcccCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHHhCCC-CchhHHHHHHH
Q 048830 167 ---QASFH---LEALKLYERMRFE-DVGLDGF-TLV----CLLSSCAHVGALNMGIFLHRIACEMGFV-ESVYVGNALVD 233 (551)
Q Consensus 167 ---~~g~~---~~A~~~~~~m~~~-~~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~ 233 (551)
..+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.++|...++.+.+.+.+ |+. ....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 22234 7789899888754 2233321 111 1144556779999999999999987632 322 2233578
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCH---h
Q 048830 234 MYAKCGNLDSAFCVFSRMRKRD-------VLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-----------FHPDS---I 292 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~ 292 (551)
+|...|++++|...|+++.+.+ ...+..+..++...|++++|..+++++.... -.|+. .
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 9999999999999999976422 2345667778899999999999999998752 12332 2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCK 369 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~ 369 (551)
.+..+...+...|++++|+..++++... .+-+...+..+..++...|++++|++.+++++.. +...+..++..+.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 4456777888999999999999999753 3336788899999999999999999999986655 7788888888999
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
..|++++|+.+++++++..|+++.+..
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999986543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-15 Score=163.88 Aligned_cols=212 Identities=9% Similarity=0.035 Sum_probs=162.9
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQ 281 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (551)
+++++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555454444432 3433333344445678888888888887653 3445566667778888888888888888
Q ss_pred HHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---C
Q 048830 282 MLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---D 357 (551)
Q Consensus 282 m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 357 (551)
..... |+. ..+..+.......|++++|...+++..+ +.|+...+..+..++.+.|++++|+..+++++.. +
T Consensus 568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 87753 433 3333344455566999999999998874 4677888999999999999999999999986655 8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
...++.+..++...|+.++|+..++++++++|+++..+..++.++...|++++|...+++..+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999999999999999999999999999987643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-16 Score=165.60 Aligned_cols=358 Identities=11% Similarity=-0.015 Sum_probs=262.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYA 135 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 135 (551)
+......+.+.|++++|+..|++.+... |+...|..+..++.+.|++++|...+...++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4456678899999999999999988754 788889999999999999999999999999864 446778888999999
Q ss_pred hCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhC---------------------------C
Q 048830 136 ANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFE---------------------------D 185 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------~ 185 (551)
..|++++|+..|..... .+......++..+........+...+..-... .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999987765432 11111111111111110011111111100000 0
Q ss_pred cccCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHhC-CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CH
Q 048830 186 VGLDG-FTLVCLLSS---CAHVGALNMGIFLHRIACEMG-FVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DV 256 (551)
Q Consensus 186 ~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~ 256 (551)
..|+. ..+..+... ....+.+++|.+.++.+++.+ ..| ....++.+...|...|++++|...|++..+ | +.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 00000 000000000 012357889999999998865 223 456788889999999999999999998764 3 45
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVD 335 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 335 (551)
.+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+..++ +.| +...+..+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~ 441 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHH
Confidence 688888999999999999999999998753 33467888899999999999999999999975 455 5677888899
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH-------HHHHhhhc
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL-------LATIYACT 405 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~ 405 (551)
++.+.|++++|+..|++++.. ++..|+.+...+...|++++|+..|+++++++|.+...+.. ....+...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999986554 78899999999999999999999999999999875443322 12234456
Q ss_pred CChhHHHHHHHHHHhC
Q 048830 406 KDEEGVARTRKLIKSN 421 (551)
Q Consensus 406 g~~~~a~~~~~~m~~~ 421 (551)
|++++|..++++....
T Consensus 522 ~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 522 QDFIEAENLCEKALII 537 (615)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999987664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-15 Score=156.46 Aligned_cols=387 Identities=11% Similarity=-0.008 Sum_probs=276.7
Q ss_pred HHHcCCCCChHHHHHHHhcCCC--CCh-hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh
Q 048830 29 SYAISVSSSLSYAQLLFNQIQN--PQT-QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKAL 105 (551)
Q Consensus 29 ~~~~~~~g~~~~A~~lf~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~ 105 (551)
...+. |+++.|+..|++..+ |+. .....++..+...|+.++|+..+++...... ........+...+...|++
T Consensus 43 i~~r~--Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n--~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARA--GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMN--ISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhC--CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCCH
Confidence 34466 999999999988763 332 1233888888888999999999999872111 1222333335577788999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHh--cCChHHHHHHHHHhhh
Q 048830 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ--ASFHLEALKLYERMRF 183 (551)
Q Consensus 106 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 183 (551)
++|.++++++.+.. +.++.++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999998874 45577777888899999999999999999876433322224444444 5666669999999987
Q ss_pred CCcccCHHHHHHHHHHHHhcCChHHHHHH------------------------------------------------HHH
Q 048830 184 EDVGLDGFTLVCLLSSCAHVGALNMGIFL------------------------------------------------HRI 215 (551)
Q Consensus 184 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~------------------------------------------------~~~ 215 (551)
.. +-+...+.....++.+.|-...|.++ ++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 63 22344444455555544443333322 222
Q ss_pred HHHh-CCCCc-hhH-HHH---HHHHHHhcCCHHHHHHHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 216 ACEM-GFVES-VYV-GNA---LVDMYAKCGNLDSAFCVFSRMRKR----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 216 ~~~~-g~~~~-~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
+... +..|. ... ..+ .+-++.+.|+..++++.|+.+..+ ...+--++..+|...+++++|+.+|+.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 2221 11121 111 222 244667889999999999999843 2335567889999999999999999998764
Q ss_pred C-----CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---ccchhhhhHHHhhcCCHHHHH
Q 048830 286 G-----FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN----------LKPG---IKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 286 g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~ 347 (551)
. ..++......|..++...+++++|..+++.+.+... -.|+ ...+..++..+.-.|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 122333457889999999999999999999976311 0122 233445678888999999999
Q ss_pred HHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 348 EVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 348 ~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+++.... |...+..+...+...|.+..|+..++.+..++|++..+...++.++...|+|++|..+.+.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999984333 99999999999999999999999999999999999999999999999999999999988776543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-14 Score=157.02 Aligned_cols=381 Identities=11% Similarity=0.005 Sum_probs=289.1
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHH--HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRA--FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 103 (551)
++..+.+. +.++.|.++.+ ..+.+.. ..++. ....+...++...+..|.+..+ -+......+--...+.|
T Consensus 319 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 319 TLPVLLKE--GQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQEP--ANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHhc--cHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcc
Confidence 36777888 88888887754 3322332 23332 3344667777777778877643 24444444444566789
Q ss_pred ChHHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhCCC---HHHHHHHhc-------------------------cCCC-
Q 048830 104 ALNKCQELHGFVIRS-G-YERCVVVSTNLMRGYAANGV---IEAARSVFD-------------------------NMPE- 152 (551)
Q Consensus 104 ~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~~~-------------------------~m~~- 152 (551)
+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+-. ....
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 999999999988762 1 12345566688899988877 333333311 1111
Q ss_pred --C--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 048830 153 --R--DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228 (551)
Q Consensus 153 --~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 228 (551)
+ +...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 2 56678888888877 8999999988877654 477665555566667899999999999987654 3445556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSM---IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG 305 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 305 (551)
..+..++.+.|+.++|.+.|++..+.++..++.. .......|++++|+..+++..+. .|+...+..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 7778889999999999999998876443333333 33344559999999999999975 577888999999999999
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 306 LVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
++++|...+++... ..| +...+..+...+...|++++|++.+++++.. ++..+..+..++...|++++|+..+
T Consensus 624 ~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 624 NVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999974 456 5778888999999999999999999986654 8999999999999999999999999
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 382 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
+++++++|++..+....+.......+++.|.+.+++.-..++.
T Consensus 701 ~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 701 RLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999988877665443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-13 Score=146.67 Aligned_cols=364 Identities=10% Similarity=-0.034 Sum_probs=275.7
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhH-HHH--HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 048830 22 HGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAW-NSL--IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98 (551)
Q Consensus 22 ~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~ 98 (551)
++ .++..+... |+.++|+..+++...|+...+ ..+ ...|...|++++|+++|+++.+..+. |...+..++..
T Consensus 71 v~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~ 145 (822)
T PRK14574 71 VD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMT 145 (822)
T ss_pred HH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Confidence 44 888999999 999999999999876644433 333 45788889999999999999998863 45666777888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~ 175 (551)
+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++.+ | +...+..+..++.+.|-...|+
T Consensus 146 y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 146 QADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 89999999999999998875 45655565565666556777669999988864 3 3444455555555444444444
Q ss_pred HHHH------------------------------------------------Hhhh-CCcccCHH-H----HHHHHHHHH
Q 048830 176 KLYE------------------------------------------------RMRF-EDVGLDGF-T----LVCLLSSCA 201 (551)
Q Consensus 176 ~~~~------------------------------------------------~m~~-~~~~p~~~-t----~~~ll~~~~ 201 (551)
++.. .+.. .+-.|... . ..=.+-++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 3333 3222 11113221 1 123455677
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHhHHHHHHHHHHhcCCh
Q 048830 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---------DVLSWNSMIVGYGVHGRG 272 (551)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~ 272 (551)
..++..++...++.+...+.+....+-.++.++|...+++++|..+|..+... +......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 88999999999999998887656778899999999999999999999997532 233356788999999999
Q ss_pred HHHHHHHHHHHHcCC-----------CCC--Hh-hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHH
Q 048830 273 DEAISFFKQMLMAGF-----------HPD--SI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLY 337 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 337 (551)
++|..+++++...-. .|| -. .+..++..+.-.|++.+|++.++.+.. ..| |......+.+++
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIY 460 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 999999999997311 122 22 344566778899999999999999975 345 888899999999
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
...|.+.+|++.++.+... +..+....+.++...+++++|..+.+.+++..|+++.+-
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999773322 778888888999999999999999999999999988543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-14 Score=141.81 Aligned_cols=395 Identities=12% Similarity=0.035 Sum_probs=270.0
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCC------hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh-
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQ------TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT- 89 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~- 89 (551)
..||++.|.|.+.|--. |++..+..+...+...+ ..+|-.+.++|-..|++++|...|.+..... ||.
T Consensus 267 ~~nP~~l~~LAn~fyfK--~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK--KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD---NDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhc--ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC---CCCc
Confidence 46888889999988887 99999988887665322 3457888899999999999999998887765 444
Q ss_pred -hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC----CHHHHHHHhccCCCC---ChhHH---
Q 048830 90 -FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG----VIEAARSVFDNMPER---DLVSW--- 158 (551)
Q Consensus 90 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~~---~~~~~--- 158 (551)
..+..+...+...|+++.+...|+.+.+. .+.+..+...|...|+..+ ..+.|..++.+..++ |..+|
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34556788899999999999999999886 3566777777777777765 445566555544332 23333
Q ss_pred -----------------------------------HHHHHHHHhcCChHHHHHHHHHhhhC---CcccCHH------HHH
Q 048830 159 -----------------------------------NSIISCYTQASFHLEALKLYERMRFE---DVGLDGF------TLV 194 (551)
Q Consensus 159 -----------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~------t~~ 194 (551)
|.+...+...|++.+|...|.+.... ...+|.. +--
T Consensus 421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 421 AQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 33333444445555555555544332 1222221 111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC
Q 048830 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGR 271 (551)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 271 (551)
.+...+-..++.+.|.+.|..+.+.. +.-+..|-.|+.+....+...+|...+..... .|+..|+.+...+.....
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 12222334445555555555555432 11122222222222233455666666666543 566777777778888888
Q ss_pred hHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHH
Q 048830 272 GDEAISFFKQMLMA-GFHPDSITFLGLLCGCSH------------QGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLY 337 (551)
Q Consensus 272 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 337 (551)
+..|.+-|...... ...+|..+..+|.+.|.+ .+..++|+++|.+.++ ..| |...-+.+.-.+
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVL 656 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhh
Confidence 88888877766553 234677777778776643 2346778888887764 344 788888899999
Q ss_pred hhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHH
Q 048830 338 GRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a 411 (551)
+..|++.+|.++|.+ +.. +..+|-.+...|...|++-.|++.|+..++.- .+++.+...|+.++.+.|++.+|
T Consensus 657 A~kg~~~~A~dIFsq-VrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQ-VREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhccCchHHHHHHHH-HHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999998 443 66889999999999999999999999999864 45688899999999999999999
Q ss_pred HHHHHHHHhCC
Q 048830 412 ARTRKLIKSNG 422 (551)
Q Consensus 412 ~~~~~~m~~~g 422 (551)
.+.........
T Consensus 736 k~~ll~a~~~~ 746 (1018)
T KOG2002|consen 736 KEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHhC
Confidence 99887776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-13 Score=136.40 Aligned_cols=327 Identities=13% Similarity=0.044 Sum_probs=236.2
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 048830 70 LQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVI----RSGYERCVVVSTNLMRGYAANGVIEAARS 145 (551)
Q Consensus 70 ~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 145 (551)
+.|..++.+..+..+ .|...|..+...+-. ++...++.++..+. ..+-++.+.+.|.+...+...|+++.|..
T Consensus 397 d~a~~~l~K~~~~~~--~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTP--VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHhccc--ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 334444444333332 344444444444333 23333344444433 34555777888888999999999999999
Q ss_pred HhccCCC-------CCh------hHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcCChHHHHH
Q 048830 146 VFDNMPE-------RDL------VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVGALNMGIF 211 (551)
Q Consensus 146 ~~~~m~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~ 211 (551)
.|+.... +|. .+-..+...+-..++.+.|.+.|....+. .|.-+ .|..++......+...+|..
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHH
Confidence 9976542 222 12333566667778999999999999875 35544 34444423334577888998
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHh------------cCChHH
Q 048830 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----RDVLSWNSMIVGYGV------------HGRGDE 274 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------------~g~~~~ 274 (551)
.+..+.+.. ..++.+++.+.+.|.+..++..|.+-|..+.+ +|+.+.-+|...|.+ .+..++
T Consensus 552 ~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 888888754 55778888888899999999999997776643 455555566665432 346788
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcC
Q 048830 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354 (551)
Q Consensus 275 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 354 (551)
|+++|.+..... +-|...-+.+.-.++..|++..|..+|.+..+. ..-...+|-.+..+|..+|++-.|+++|+..+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888753 446678888999999999999999999999774 33455678899999999999999999999866
Q ss_pred CC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc
Q 048830 355 PS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 355 ~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 405 (551)
.. +..+.+.|..++...|.+.+|...+..+..+.|.++..-..++-+..+.
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 55 8889999999999999999999999999999999998776666555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-12 Score=132.31 Aligned_cols=329 Identities=15% Similarity=0.099 Sum_probs=237.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhcc---CCCCChhHHHHHHHHHHhcCChHHHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN---MPERDLVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~ 175 (551)
....|++++|..++.++++.. +.+...|..|..+|-..|+.+++...+-. +...|...|-.+..-..+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334488888888888888764 55677788888888888888887776533 23356677888877778888888888
Q ss_pred HHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCCHHHHHHHHHhc
Q 048830 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG----NALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 176 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
-.|.+..+.. +++...+.--...|-+.|+...|...+.++.....+.|..-. -..+..|...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888877653 344445555566677788888888888888776533232222 23355666677777787777766
Q ss_pred CC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------------------CCHhhHHHHHH
Q 048830 252 RK-----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH---------------------------PDSITFLGLLC 299 (551)
Q Consensus 252 ~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------------------------p~~~t~~~ll~ 299 (551)
.. -+...++.++..|.....++.|......+...... ++... ..+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 53 23456777888888888888888887777662222 22222 12223
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCc
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~ 373 (551)
++.+....+....+.....+. ...| ++..|.-+.++|.+.|++.+|+.+|...... +..+|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 344555555555555555443 5444 5788999999999999999999999983333 88899999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeE
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSW 431 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 431 (551)
++.|.+.|++++.+.|++..+-..|+.+|.+.|+.++|.+++..|...+....+++.|
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999999887444333355555
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-12 Score=117.69 Aligned_cols=353 Identities=12% Similarity=0.066 Sum_probs=222.1
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH
Q 048830 48 IQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127 (551)
Q Consensus 48 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 127 (551)
..+++..+|..||.++++-...+.|.+++++......+ .+..+||.+|.+-. +...+++..+|....+.||..|+
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhH
Confidence 33456678889999999888889999999988877776 88889998887643 33447888888888889999999
Q ss_pred HHHHHHHHhCCCHHHHHHHh----ccCC----CCChhHHHHHHHHHHhcCChHH-HHHHHHHhhh----CCccc----CH
Q 048830 128 TNLMRGYAANGVIEAARSVF----DNMP----ERDLVSWNSIISCYTQASFHLE-ALKLYERMRF----EDVGL----DG 190 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~----~~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~p----~~ 190 (551)
|+++.+.++.|.++.|.+.+ .+|+ +|...+|..+|..+.+.+++.+ |.....+... ..++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 99999999999887765544 4443 4788888888888888877755 3334444332 22222 44
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHhHH
Q 048830 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMG----FVES---VYVGNALVDMYAKCGNLDSAFCVFSRMRK----RDVLSW 259 (551)
Q Consensus 191 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~ 259 (551)
.-|...+..|....+.+.|.+++..+.... +.|+ ..-|..+..+.+.....+.-...|+.|.. |+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 567788888888888888888877654321 1222 23455666777777777777778877763 566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh
Q 048830 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339 (551)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 339 (551)
..++.+....|.++-.-++|.+|+..|..-+...- +.++..+... ...|+...-..+-....+
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~-k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARD-KLHPLTPEREQLQVAFAK 499 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcC-CCCCCChHHHHHHHHHHH
Confidence 67777777777787777788877776532222221 2222223221 222221111111111111
Q ss_pred c-CCHHHHHHH-HhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc---CCCcc--hHHHHHHHhhhcCChh
Q 048830 340 A-GKLEKALEV-INTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE---AASAG--DYVLLATIYACTKDEE 409 (551)
Q Consensus 340 ~-g~~~~A~~~-~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~ 409 (551)
+ -++.++.+. ..+ +.. .....+..+..+.+.|..++|-+++..+.+.+ |..|. +..-+.+.-.......
T Consensus 500 ~aad~~e~~e~~~~R-~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 500 CAADIKEAYESQPIR-QRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHHHhhHHH-HHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 1 011111111 111 211 56666677777777888888888887776543 33332 2334555555667777
Q ss_pred HHHHHHHHHHhCCC
Q 048830 410 GVARTRKLIKSNGI 423 (551)
Q Consensus 410 ~a~~~~~~m~~~g~ 423 (551)
.|...++.|...+.
T Consensus 579 qA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 579 QAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHcCc
Confidence 78888887765544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-15 Score=143.76 Aligned_cols=254 Identities=15% Similarity=0.094 Sum_probs=106.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS-SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 239 (551)
+...+.+.|++++|++++++......+|+...|..++. .+...++.+.|...++.+.+.+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 34555566666666666644333322344444443332 334456666777777766665422 45556666666 5778
Q ss_pred CHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 048830 240 NLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316 (551)
Q Consensus 240 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 316 (551)
++++|.+++...-+ +++..+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877766532 456667777888888888888888888877532 345666777788888888999999999988
Q ss_pred hHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhh---cCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 317 MVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINT---SSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 317 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
.++. .| |......++..+...|+.+++.++++. ..+.|+..|..+..++...|+.++|...++++.+.+|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 8753 56 467778888888888988886666654 2344788899999999999999999999999999999999
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 393 GDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
.....++.++...|+.++|.+++++.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-10 Score=113.46 Aligned_cols=407 Identities=11% Similarity=0.038 Sum_probs=315.1
Q ss_pred cCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC------CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC
Q 048830 15 ARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ------NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88 (551)
Q Consensus 15 g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd 88 (551)
|+.-+..-|-.=...+-+. |..-.+..+..... +.--.+|+.-...|.+.+.++-|..+|...++..+ -+
T Consensus 474 gv~i~rdqWl~eAe~~e~a--gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp--~k 549 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDA--GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP--CK 549 (913)
T ss_pred ceeecHHHHHHHHHHHhhc--CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc--ch
Confidence 3344444444444444444 44444444443321 12234677777788888888888888888877654 35
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHH
Q 048830 89 TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCY 165 (551)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 165 (551)
...|......=-..|..+.-..++++++... +.....|-....-+-..|++..|+.++.+.-+ .+...|-+-+..-
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle 628 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLE 628 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 5566666666666788888888888888763 44555666666777888999999998887754 3556788888888
Q ss_pred HhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048830 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245 (551)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 245 (551)
..+.++++|..+|.+.... .|+...|.--++.---.+..++|.+++++.++. ++.-...|-.+...+-+.++++.|.
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988764 567666666666666678999999999988885 3444678888899999999999999
Q ss_pred HHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 048830 246 CVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322 (551)
Q Consensus 246 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 322 (551)
+.|..-.+ | .+..|-.+...--+.|+.-.|..++++....+ +-|...|...|..-.+.|+.+.|..++.+.++ .
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--e 782 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--E 782 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 99887664 3 45678888888888899999999999988764 44667888999999999999999999999887 4
Q ss_pred CCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 323 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
.+.+...|..-|.+..+.++-..+.+.+++ -+.|+.+.-+....+....+++.|...|.++++.+|++..+|..+...+
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkk-ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 556778888888888888887777777777 6669999889999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhCCCccCCceeEEEEC
Q 048830 403 ACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIG 435 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~ 435 (551)
...|.-++-.+++.+... -.|..|..|+.+.
T Consensus 862 l~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 999999988888887765 4566677776443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-12 Score=126.31 Aligned_cols=284 Identities=13% Similarity=-0.002 Sum_probs=148.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhCCCHHHH
Q 048830 66 SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST--NLMRGYAANGVIEAA 143 (551)
Q Consensus 66 ~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~y~~~g~~~~A 143 (551)
.|++++|.+.+......... | ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-P-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-h-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 46666666555554333211 1 112222233335556666666666666543 33332221 224455566666666
Q ss_pred HHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 048830 144 RSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220 (551)
Q Consensus 144 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 220 (551)
...++++.+ .+......+...|.+.|++++|++++..+.+.+..++.. ...+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~----------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE----------------------- 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH-----------------------
Confidence 666655543 234455555566666666666666666665544332111 11000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048830 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL 297 (551)
Q Consensus 221 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 297 (551)
..+|..++.......+.+...++++.+++ .++.....+...+...|+.++|..++++..+. .||... .+
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VL 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HH
Confidence 01222223323333344555555555542 35556666666667777777777777666653 333321 12
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHH
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVE 375 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~ 375 (551)
+.+....++.+++.+..+...++ .+-|...+.++..++.+.|++++|.+.|++++.. +...+..|...+...|+.+
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 33333446667777776666543 1224445666677777777777777777765544 5555566667777777777
Q ss_pred HHHHHHHHHHhh
Q 048830 376 IGEIAMKNLVQL 387 (551)
Q Consensus 376 ~a~~~~~~~~~~ 387 (551)
+|...+++.+.+
T Consensus 379 ~A~~~~~~~l~~ 390 (398)
T PRK10747 379 EAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhh
Confidence 777777776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.1e-13 Score=129.99 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=220.9
Q ss_pred CHHHHHHHhccCCC--CCh-hHHHHHHHHHHhcCChHHHHHHHHHhhhCCc--ccCHHHHHHHHHHHHhcCChHHHHHHH
Q 048830 139 VIEAARSVFDNMPE--RDL-VSWNSIISCYTQASFHLEALKLYERMRFEDV--GLDGFTLVCLLSSCAHVGALNMGIFLH 213 (551)
Q Consensus 139 ~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 213 (551)
...+|...|..+++ +|+ .....+..+|...+++++|.++|+..++... .-+-.+|.+.+-.+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46789999988765 344 3445678899999999999999999876421 12455787777655322 122222
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048830 214 -RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289 (551)
Q Consensus 214 -~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (551)
+.+++. -+..+.+|.++.++|.-.++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+.... +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 223332 2445899999999999999999999999998753 567888888889999999999999998875 344
Q ss_pred CH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHH
Q 048830 290 DS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTL 364 (551)
Q Consensus 290 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 364 (551)
.. ..|..+...|.+.++++.|+-.|+.+. .+.| +......+...+.+.|+.|+|++++++|+.. |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 43 567778889999999999999999886 6778 6777888899999999999999999997765 66666666
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
+..+...+++++|...++++.++-|++...|..++.+|-+.|+.+.|..-|.-|.+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 77788889999999999999999999999999999999999999999999887766443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-11 Score=114.09 Aligned_cols=349 Identities=13% Similarity=0.051 Sum_probs=222.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--HHH
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV--STN 129 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 129 (551)
|..-+-...-.+.+.|....|++.|......-+ ..-..|.-|...+. +.+.+ ..+.. |.+.|... ---
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P--~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP--WFWSAWLELSELIT---DIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC--cchHHHHHHHHhhc---hHHHH----HHHHh-cCcccchHHHHHH
Confidence 333333333445556666677777766654432 23333433333222 22221 11111 22221111 112
Q ss_pred HHHHHHhCCCHHHHHHHhccCCC---CChh-HHHHHHHHHHhcCChHHHHHHHHHhhhCCc--ccCHHHHHHHHHHHHhc
Q 048830 130 LMRGYAANGVIEAARSVFDNMPE---RDLV-SWNSIISCYTQASFHLEALKLYERMRFEDV--GLDGFTLVCLLSSCAHV 203 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~ 203 (551)
+..+|....+.+++..-.+.... |+.. .-+....+.-...++++|+.+|+++.+... --|-.||+.++-+-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 33444444555555554444332 2211 122223334455677777777777766531 12455676666443222
Q ss_pred CChH-HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHH
Q 048830 204 GALN-MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFF 279 (551)
Q Consensus 204 ~~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 279 (551)
..+. .|..++ .+- +--+.+...+.+-|+-.++.++|...|++..+- ....|+.|..-|....+...|++-+
T Consensus 313 skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2211 111111 111 223456677788888888999999999987753 4578999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC--
Q 048830 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-- 356 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 356 (551)
+..++-. +-|...|-.|.++|.-.+.+.-|+-+|++.. .++| |...|.+|.++|.+.+++++|++-|.+++..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9998853 5577889999999999999999999999885 5667 7889999999999999999999999987766
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh-------cCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 357 -DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-------EAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 357 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+...+..|...+-+.++.++|...|++-++. +|....+-..|+.-+.+.+++++|..+-....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4488889999999999999999999998873 23334455568888999999999988765543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=124.07 Aligned_cols=274 Identities=12% Similarity=0.043 Sum_probs=202.1
Q ss_pred CCCHHHHHHHhccCCCC--ChhH-HHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHH--HHHHHHHhcCChHHHHH
Q 048830 137 NGVIEAARSVFDNMPER--DLVS-WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV--CLLSSCAHVGALNMGIF 211 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~ 211 (551)
.|+++.|++.+...++. ++.. |-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 68888888888766542 2233 322334447888888898888888753 45544333 33556778888999998
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---H--------hHHHHHHHHHHhcCChHHHHHHHH
Q 048830 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD---V--------LSWNSMIVGYGVHGRGDEAISFFK 280 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~ 280 (551)
.++.+.+.. +-++.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888865 3457788888899999999999998888887521 1 133444444445555666677777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---C
Q 048830 281 QMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---D 357 (551)
Q Consensus 281 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 357 (551)
.+... .+.+......+..++...|+.++|..+++...+. .|+... .++.+....++.+++.+.+++..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3456777888999999999999999999988753 444421 1233334569999999888764433 8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+..+...|...+++++|...|+++++.+|++ ..+..++.++.+.|+.++|..++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999985 5688999999999999999999986643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-11 Score=124.17 Aligned_cols=289 Identities=10% Similarity=-0.027 Sum_probs=144.5
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 048830 65 QSLSPLQAIFYYNHMLMASLSRPDT-FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA 143 (551)
Q Consensus 65 ~~g~~~~A~~l~~~m~~~~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 143 (551)
..|+++.|.+.+.+..+.. |+. ..+-....+....|+.+.|.+.+....+....+...+.-.....+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3455555555555544432 322 222233344445555555555555554432111112222234455555555555
Q ss_pred HHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 048830 144 RSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220 (551)
Q Consensus 144 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 220 (551)
...++.+.+ | +..++..+...+.+.|++++|.+++..+.+.++.++......-..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a--------------------- 231 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA--------------------- 231 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---------------------
Confidence 555555443 2 3334445555555555555555555555554322111110000000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH---
Q 048830 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF--- 294 (551)
Q Consensus 221 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--- 294 (551)
+..++..-......+...+.+...++ .++..+..+...+...|+.++|.+++++..+. .||....
T Consensus 232 -------~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 232 -------EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -------HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 11111111111223334444444443 36666666777777777777777777777664 3333311
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHh--hcCCC--CHHHHHHHHHHHHh
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVIN--TSSPS--DPVLWRTLLGSCKI 370 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~--~~~~~~~ll~~~~~ 370 (551)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+ .+... +...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 111112233466677777777666542222222455577777777777777777777 33332 55566677777777
Q ss_pred cCcHHHHHHHHHHHHh
Q 048830 371 HRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~ 386 (551)
.|+.++|.+++++.+.
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777655
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=132.17 Aligned_cols=255 Identities=17% Similarity=0.128 Sum_probs=82.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF-TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 137 (551)
+...+.+.|++++|++++.+....... |+.. -|..+...+...++.+.|.+.++++...+ +.++..+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~-~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAP-PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 345566667777777776544333211 3333 33334444455666777777777776654 2244555555555 566
Q ss_pred CCHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC-cccCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048830 138 GVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLSSCAHVGALNMGIFLHR 214 (551)
Q Consensus 138 g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 214 (551)
+++++|.++++..-+ ++...+..++..+.+.++++++..+++...... .+++...|......+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777666655432 445556666666777777777777777655322 23455556666666667777777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 215 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
++++.. +.|..+.+.++..+...|+.+++.+++.... ..|+..|..+..+|...|+.++|+.+|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 777654 2245566667777777777776555555443 2455666667777777777777777777766542 3355
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.+...+..++...|+.++|.++..++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 566666667777777777776666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-11 Score=114.23 Aligned_cols=212 Identities=12% Similarity=0.119 Sum_probs=173.9
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 048830 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISF 278 (551)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 278 (551)
-.|+.-.+.+-++.+++....+ ...|--+..+|....+.++..+.|++..+ .|+.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 3577888888888888865433 33377778889999999999999998764 4667788778888888999999999
Q ss_pred HHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-
Q 048830 279 FKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS- 356 (551)
Q Consensus 279 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 356 (551)
|++.+.. .|+ ...|..+..+.-+.+.+++++..|++..++ ++.-+++|+.....+..++++++|.+.|+.+|..
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999875 444 467777777778899999999999999874 5556889999999999999999999999987765
Q ss_pred --------C--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 357 --------D--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 357 --------~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+ +.+..+++..- -.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 22223333222 34899999999999999999999999999999999999999999998754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-10 Score=110.86 Aligned_cols=389 Identities=14% Similarity=0.084 Sum_probs=305.1
Q ss_pred HHHHHHcCCCCChHHHHHHHhcC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHH----HHcCCCCCChhhHHHHHHH
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQI---QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHM----LMASLSRPDTFTFTFTLKA 98 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~~~~~pd~~~~~~ll~~ 98 (551)
|.-+|++. .-++.|.+++++. .+.+...|.+-...--.+|+.+...++..+- ...|+. .|...|..=..+
T Consensus 412 LwlAlarL--etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~-i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 412 LWLALARL--ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE-INRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee-ecHHHHHHHHHH
Confidence 44456666 6677888887654 3567888888887778889888888877654 456776 888888888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERC--VVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLE 173 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 173 (551)
|-..|.+-.+..+....+..|+... -.+|+.-...|.+.+.++-|+.+|....+ .+...|...+..--..|..++
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 8888999999999988888886543 45788888889999999999999987765 456678777776677788999
Q ss_pred HHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 048830 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK 253 (551)
Q Consensus 174 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 253 (551)
...+|++....- +-....+.....-.-..|++..|..++..+.+... .+..+|-+-+..-....+++.|..+|.+...
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 999999887652 33333444444555567999999999999988753 3678888889999999999999999998763
Q ss_pred --CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch
Q 048830 254 --RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330 (551)
Q Consensus 254 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 330 (551)
+....|.--+...-..+..++|++++++..+. -|+- ..|..+.+.+-+.++++.|...|..-.+ ..+-.+..|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 67777877777777789999999999988874 5665 5667777788888999999988876543 233357778
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC-----------------
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA----------------- 390 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----------------- 390 (551)
-.|.++=-+.|.+-.|..+++++.-. +...|-..+..-.+.|+.+.|..+..++++--|.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 88888888999999999999884433 8999999999999999999999999998875554
Q ss_pred -------------CcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 391 -------------SAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 391 -------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
||-....++.++....+++.|++.|.+..+.+.
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344566777888888889999999988876544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-12 Score=125.25 Aligned_cols=245 Identities=13% Similarity=0.071 Sum_probs=194.5
Q ss_pred CChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHH-HH
Q 048830 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF--VESVYVGNALVDMYAKCGNLDS-AF 245 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~-A~ 245 (551)
-+..+|+..|.+... .+.-+.....-+..+|...+++++++++|+.+.+... ..+..+|.+.+--+-+.=.+.- |.
T Consensus 333 y~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 356789999988443 3444456777788999999999999999999887531 2346677776654433222211 22
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 048830 246 CVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324 (551)
Q Consensus 246 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (551)
.+. .+....+.+|-++..+|.-+++.+.|++.|++.+.. .| ...+|+.+..-+.....+|.|...|+..+ ++.
T Consensus 412 ~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~ 485 (638)
T KOG1126|consen 412 DLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVD 485 (638)
T ss_pred HHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCC
Confidence 222 223356789999999999999999999999999874 56 56888888888888899999999999775 344
Q ss_pred C-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 325 P-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 325 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
| +-..|..|.-.|.++++++.|+-.|+++++. +.+....+...+.+.|+.|+|+.++++++.++|.|+-.-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4 2334445778899999999999999998877 77888888899999999999999999999999999999999999
Q ss_pred HhhhcCChhHHHHHHHHHHh
Q 048830 401 IYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~ 420 (551)
++...+++++|...++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 99999999999999999986
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-10 Score=117.78 Aligned_cols=250 Identities=14% Similarity=0.003 Sum_probs=152.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
..+.+.|+++.|.+.+.+..+.. |+.. .-......+...|+++.|...++.+.+.. +-+..+...+..+|...|+
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 33444455555555555443321 2221 12222344444555555555555555543 2234445555555555555
Q ss_pred HHHHHHHHHhcCCC---CHhHHH----HHHHHHHhcCChHHHHHHHHHHHHcCC---CCCHhhHHHHHHHHhccCCHHHH
Q 048830 241 LDSAFCVFSRMRKR---DVLSWN----SMIVGYGVHGRGDEAISFFKQMLMAGF---HPDSITFLGLLCGCSHQGLVEEG 310 (551)
Q Consensus 241 ~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a 310 (551)
+++|.+.+....+. +...+. ....++...+..+++.+.+..+..... +.+...+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 55555555555431 222121 111122233333444445555554321 13677888888999999999999
Q ss_pred HHHHHHhHHhcCCCCCccc---hhhhhHHHhhcCCHHHHHHHHhhcCCC---CH--HHHHHHHHHHHhcCcHHHHHHHHH
Q 048830 311 VEYFHMMVSRYNLKPGIKH---YGCLVDLYGRAGKLEKALEVINTSSPS---DP--VLWRTLLGSCKIHRNVEIGEIAMK 382 (551)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~ll~~~~~~g~~~~a~~~~~ 382 (551)
.+.+++..++ .|+... .....-.....++.+++.+.++++.+. |+ ....++...|.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999864 344321 111222223457888888888775544 77 788899999999999999999999
Q ss_pred --HHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 383 --NLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 383 --~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
...+..|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 360 ~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 360 NVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 577777874 457799999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-11 Score=114.51 Aligned_cols=344 Identities=15% Similarity=0.095 Sum_probs=230.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC------------CC
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYE------------RC 123 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~ 123 (551)
.|.+--.+.+.|.++.|+..|+...+.. ||..+-..|+-++...|+.++..+.|.+|+..... |+
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3344445788899999999999888765 77766555555555678889999999988764322 22
Q ss_pred hhHHHHHHH-----HHHhCC--CHHHHH----HHhccCCCCChhH---HH------------------HHHHHHHhcCCh
Q 048830 124 VVVSTNLMR-----GYAANG--VIEAAR----SVFDNMPERDLVS---WN------------------SIISCYTQASFH 171 (551)
Q Consensus 124 ~~~~~~li~-----~y~~~g--~~~~A~----~~~~~m~~~~~~~---~~------------------~li~~~~~~g~~ 171 (551)
....+.-+. -.-+.. +.++++ ++..-+..|+-.. |. .-...|.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 222222221 111111 122222 2222222222110 11 012357899999
Q ss_pred HHHHHHHHHhhhCCcccCHHHHH--HHHH---------------------------H-------HHhcCChHHHHHHHHH
Q 048830 172 LEALKLYERMRFEDVGLDGFTLV--CLLS---------------------------S-------CAHVGALNMGIFLHRI 215 (551)
Q Consensus 172 ~~A~~~~~~m~~~~~~p~~~t~~--~ll~---------------------------~-------~~~~~~~~~a~~~~~~ 215 (551)
+.|++++.-..+..-+.-...-+ +++. + ....|++++|...+.+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999988775543221111111 1111 0 1124678888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 292 (551)
.+...-.-....|| +.-.+-+.|++++|.+.|-++. ..++...-.+...|....+..+|++++.+.... ++.|+.
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 77654222222333 3445677889999999887764 356666777778888888999999988776653 455667
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcC--CCCHHHHHHHHHH-H
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSS--PSDPVLWRTLLGS-C 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~-~ 368 (551)
.+.-|...|-+.|+-.+|.+.+-.- |..-| +.++..-|..-|....-+++|+.+|+++- ..+..-|..++.. +
T Consensus 594 ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 8888889999999999998887644 34445 88888889999999999999999999833 2288999998855 5
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
++.|++++|..+|+++.+.-|.+....-.|.+++...|.
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 778999999999999999999999999999998888875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-10 Score=109.07 Aligned_cols=253 Identities=15% Similarity=0.112 Sum_probs=185.3
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCC
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF--VESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 240 (551)
.+|....+.+++++-.......|++-+...-+-...+.-...++++|+.+|+.+.+..+ -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444455666666666666666544444444444444556677777777777776532 1134455555433322222
Q ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 241 LDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 241 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
+.--....-.+.+--+.|.-.+..-|.-.++.++|...|++..+. .|.. ..|+.+..-|....+...|.+-++.++
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 221111112222333445555667788889999999999999985 4444 567777788999999999999999997
Q ss_pred hcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 320 RYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 320 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
.+.| |-..|-.|.++|.-.+...-|+-+|+++... |...|.+|...|.+.++.++|+..|++++..+..+..+|
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 4566 8899999999999999999999999986654 999999999999999999999999999999988888999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 396 VLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..|+.+|.+.++.++|...+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-09 Score=104.20 Aligned_cols=401 Identities=11% Similarity=0.035 Sum_probs=233.8
Q ss_pred chhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--CC-hhhHHHHHHHHHcCCChhHHHHHHHH
Q 048830 2 GLKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--PQ-TQAWNSLIRAFAQSLSPLQAIFYYNH 78 (551)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 78 (551)
+|+++.+.+-+ =..++..|-..+.+=.++ ..+..|+.+|++... |- -..|-..+..=-.-|+...|.++|++
T Consensus 92 ARSv~ERALdv---d~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 92 ARSVFERALDV---DYRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHhc---ccccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34555555422 234566666677777777 777777777775431 11 12344334333444666666666666
Q ss_pred HHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C---
Q 048830 79 MLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R--- 153 (551)
Q Consensus 79 m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~--- 153 (551)
-..-. ||...|.+.++.=.+.+..+.|..+++..+- ..|++..|--....=.++|.+..|.++|+...+ .
T Consensus 167 W~~w~---P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 167 WMEWE---PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHcCC---CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 55443 6666666666666666666666666666654 246666666666666666666666666654432 1
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHhhhC-------------------------------------------CcccC
Q 048830 154 -DLVSWNSIISCYTQASFHLEALKLYERMRFE-------------------------------------------DVGLD 189 (551)
Q Consensus 154 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------------------------~~~p~ 189 (551)
+...+++...-=.++..++.|.-+|.-..+. .-+-|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 1112222222222223333333333222111 01223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--hHHHHHHHH--------HHhcCCHHHHHHHHHhcCC--C-CH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV--YVGNALVDM--------YAKCGNLDSAFCVFSRMRK--R-DV 256 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~--------y~~~g~~~~A~~~~~~~~~--~-~~ 256 (551)
-.++--.+..-...|+.+...++++.++..- +|-. ..|...|.. -....+.+.+.++|+...+ | ..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 3444445555555677777777777766542 3311 112221111 1234566666777665543 1 22
Q ss_pred h----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchh
Q 048830 257 L----SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYG 331 (551)
Q Consensus 257 ~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 331 (551)
. .|-....--.++.+...|.+++...+ |..|-..+|...|..-.+.+.++....+++..+ ...| +..+|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHH
Confidence 2 23333334446677777777777665 457778888888887778888888888888876 3455 567777
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh---
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA--- 403 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--- 403 (551)
.....-...|+.+.|..+|+-++.. ....|.+.|..-...|.++.|..+|+++++..+..+ ++...+..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~ 554 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhcccc
Confidence 7777777788888888888776654 466777788777888888888888888888776644 5665554433
Q ss_pred --hcC-----------ChhHHHHHHHHHH
Q 048830 404 --CTK-----------DEEGVARTRKLIK 419 (551)
Q Consensus 404 --~~g-----------~~~~a~~~~~~m~ 419 (551)
..| ....|+++|++..
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 334 4566777777664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.3e-11 Score=110.37 Aligned_cols=421 Identities=13% Similarity=0.056 Sum_probs=276.5
Q ss_pred HHHHHHHcCCCCChHHHHHHHhcCCC----CChhh-HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh----HHHH
Q 048830 25 WLLNSYAISVSSSLSYAQLLFNQIQN----PQTQA-WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT----FTFT 95 (551)
Q Consensus 25 ~li~~~~~~~~g~~~~A~~lf~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~----~~~l 95 (551)
.|..-|.-. ....+|+..++-+.. ||.-. --.+-..+.+...+.+|++.|+-.+..-+. .+..+ .+.+
T Consensus 206 nlaqqy~~n--dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps-ink~~rikil~ni 282 (840)
T KOG2003|consen 206 NLAQQYEAN--DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS-INKDMRIKILNNI 282 (840)
T ss_pred HHHHHhhhh--HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc-cchhhHHHHHhhc
Confidence 344455555 667788888875543 22211 123445677888899999999776654322 33333 3344
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC----------------CChhHHH
Q 048830 96 LKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE----------------RDLVSWN 159 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------------~~~~~~~ 159 (551)
.-.+.+.|+++.|...|++..+. .|+..+--.|+-++..-|+-++..+.|.+|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 44578899999999999999875 58887766788888888999999999988752 2333333
Q ss_pred H-----HHHHHHhcC--ChHHHHHHHHHhhhCCcccCHHH-------------HHH--------HHHHHHhcCChHHHHH
Q 048830 160 S-----IISCYTQAS--FHLEALKLYERMRFEDVGLDGFT-------------LVC--------LLSSCAHVGALNMGIF 211 (551)
Q Consensus 160 ~-----li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t-------------~~~--------ll~~~~~~~~~~~a~~ 211 (551)
. ++.-+-+.+ +.++++-.-.++...-+.||-.. +.. -..-+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2 222222222 22333333333333333443210 110 1123567899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHH------------------------------------HhcCCHHHHHHHHHhcCCCC
Q 048830 212 LHRIACEMGFVESVYVGNALVDMY------------------------------------AKCGNLDSAFCVFSRMRKRD 255 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y------------------------------------~~~g~~~~A~~~~~~~~~~~ 255 (551)
++.-..+..-.......|.|-..+ ...|++++|.+.|.+....|
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 988776654322222222222111 13578889999998888777
Q ss_pred HhHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchh
Q 048830 256 VLSWNSMI---VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYG 331 (551)
Q Consensus 256 ~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 331 (551)
...-.+|. -.+-..|+.++|++.|-++..- +.-+...+..+.+.|-...+..+|++++.+.. .+.| |+.+..
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ils 596 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILS 596 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHH
Confidence 65544443 3567789999999999887653 23456677778888888899999999988774 4455 788999
Q ss_pred hhhHHHhhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCCh
Q 048830 332 CLVDLYGRAGKLEKALEVINTS---SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 408 (551)
.|.++|-+.|+-..|.+..-.. .|.+..+..-|...|....-.+++...|+++--+.|+-..-...++.++-+.|++
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999998875431 3448888777888888888899999999999989998665556677888899999
Q ss_pred hHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHH
Q 048830 409 EGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEI 461 (551)
Q Consensus 409 ~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 461 (551)
..|..+++...++- ..+..|--. ..-++|+..-.+..+...+|+++
T Consensus 677 qka~d~yk~~hrkf-pedldclkf------lvri~~dlgl~d~key~~klek~ 722 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKF-PEDLDCLKF------LVRIAGDLGLKDAKEYADKLEKA 722 (840)
T ss_pred HHHHHHHHHHHHhC-ccchHHHHH------HHHHhccccchhHHHHHHHHHHH
Confidence 99999999886542 222222100 00123455555666666666554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-10 Score=106.68 Aligned_cols=349 Identities=14% Similarity=0.141 Sum_probs=240.9
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ----NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~ 92 (551)
+....++..||...||. ...+.|..++++.. +-+..+||.+|.+-. +....++..+|...... ||..|+
T Consensus 204 PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~-Pnl~Tf 276 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMT-PNLFTF 276 (625)
T ss_pred CCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcC-CchHhH
Confidence 45778999999999999 99999999998765 346778898886543 23337899999999998 999999
Q ss_pred HHHHHHHhccCChHH----HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH-HHHHhccCCC------------CCh
Q 048830 93 TFTLKACERVKALNK----CQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA-ARSVFDNMPE------------RDL 155 (551)
Q Consensus 93 ~~ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~m~~------------~~~ 155 (551)
|.++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++..+.. .|.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 46788899999999999999999999999888754 4444443321 244
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhC---C-cccCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 048830 156 VSWNSIISCYTQASFHLEALKLYERMRFE---D-VGLDG---FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228 (551)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~-~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 228 (551)
..+..-+..|.+..+.+-|.++-.-.... . +.|+. .-|..+..+.++....+.-...|+.++-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 56677777777888888887775544321 1 23332 24556777888888999999999999888788888898
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHhccC
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI---TFLGLLCGCSHQG 305 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g 305 (551)
.-++.+..-.|.++-..+++..+..- ...-+.+--++++..|......|+.. -+.....-|+ ..
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~------------ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad 503 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEY------------GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA-AD 503 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHh------------hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HH
Confidence 89999888888888888888765532 11222233345555566555555433 2333322221 11
Q ss_pred CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHH---HHHHHHHhcCcHHHH
Q 048830 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWR---TLLGSCKIHRNVEIG 377 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~---~ll~~~~~~g~~~~a 377 (551)
-.+.....-.++. ..+......+++.-++.|.|+.++|.+++.-.... -....| -|+..-...++...|
T Consensus 504 ~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 504 IKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1111222222332 22334455778888899999999999988762122 122233 444556667777788
Q ss_pred HHHHHHHHhhc
Q 048830 378 EIAMKNLVQLE 388 (551)
Q Consensus 378 ~~~~~~~~~~~ 388 (551)
..+++-+...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 88877776554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-09 Score=103.16 Aligned_cols=384 Identities=11% Similarity=0.074 Sum_probs=291.7
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048830 36 SSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112 (551)
Q Consensus 36 g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~ 112 (551)
+++..|+++|++.. .++...|-..+..=.++.....|..++++....-+. .|..-|. -+..=-..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyK-Y~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYK-YIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHH-HHHHHHHhcccHHHHHHH
Confidence 67888999999765 467888988999999999999999999999876544 4544332 222334569999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCH
Q 048830 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP--ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190 (551)
Q Consensus 113 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 190 (551)
+.-.+ ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--....=.+.|+...|..+|....+. -.|.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 99877 68999999999999999999999999999865 599999999998889999999999999887653 2223
Q ss_pred HHHHHHHHHH----HhcCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH--------HhcCC---C
Q 048830 191 FTLVCLLSSC----AHVGALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVF--------SRMRK---R 254 (551)
Q Consensus 191 ~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~--------~~~~~---~ 254 (551)
..-..+..++ .....++.|..++..++..=... ....|..+...--+-|+.....+.. +.+.+ -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 3333333344 45667888999999988863221 1456666666666667765544433 22222 2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-------hHHHHHHH---HhccCCHHHHHHHHHHhHHhcCCC
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI-------TFLGLLCG---CSHQGLVEEGVEYFHMMVSRYNLK 324 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~ 324 (551)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+ -....+++.+.++|+..++ +.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lI 396 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LI 396 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hc
Confidence 5678888888888889999999999999875 566331 12111112 2357889999999999875 44
Q ss_pred C-CccchhhhhHHH----hhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 325 P-GIKHYGCLVDLY----GRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 325 p-~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
| ...|+..+--+| .++.++..|.+++..++.. -..++...|..-.+.+++|....+|++.++-+|.+-.++..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 5 556666555555 4788999999999887766 67788888888889999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHhCCCccCCce
Q 048830 398 LATIYACTKDEEGVARTRKLIKSNGIKTTPGW 429 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 429 (551)
.+..-...|+++.|+.+|+...+.....-|..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 99999999999999999998877654443443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8e-10 Score=112.92 Aligned_cols=180 Identities=11% Similarity=-0.002 Sum_probs=117.8
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048830 36 SSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112 (551)
Q Consensus 36 g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~ 112 (551)
|++++|.+++.++. +.+...|.+|...|-+.|+.++++..+-..-...+ -|...|..+..-..+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p--~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP--KDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHhcccHHHHHHHH
Confidence 78888888887765 34667788888888888888888777655544443 45567777777777888888888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCCh--------hHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 048830 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDL--------VSWNSIISCYTQASFHLEALKLYERMRFE 184 (551)
Q Consensus 113 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (551)
.++++.. +++...+---...|-+.|+...|..-|.++.+.+. ..--.++..|...++-+.|++.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 8888764 45555555566778888888888777776654221 11122345555666667777777665542
Q ss_pred -CcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 185 -DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 185 -~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
+-..+..+++.++..+.....++.+.........
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 1223344555666666666666666665555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-10 Score=102.80 Aligned_cols=263 Identities=15% Similarity=0.151 Sum_probs=169.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCCHHH
Q 048830 66 SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC---VVVSTNLMRGYAANGVIEA 142 (551)
Q Consensus 66 ~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~ 142 (551)
+.++++|.++|-+|.+... -+..+-.+|.+.|-+.|.++.|..+|+.+.++.--+. ......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4678999999999998653 3445566788889999999999999999987421111 2244567788999999999
Q ss_pred HHHHhccCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH----HHHHHHHHHHhcCChHHHHHHHHH
Q 048830 143 ARSVFDNMPERD---LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF----TLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 143 A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
|+.+|..+.+.+ ..+...|+..|....+|++|++.-+++.+.+-.+..+ -|.-+...+....+++.|...+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887633 3466778999999999999999998888766555433 233444444556677777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV----LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
+.+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|.+.|+.++....+.++.+....++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 76654 22344444566677777777777777777665443 24455566677777777777766666664322222
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
-..+...-....-.+.|..++.+-++ -+|+...+..|++.
T Consensus 285 --~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~ 324 (389)
T COG2956 285 --ELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDY 324 (389)
T ss_pred --HHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHh
Confidence 22222222222233444444333322 24666555555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-10 Score=104.16 Aligned_cols=286 Identities=12% Similarity=0.004 Sum_probs=184.7
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH
Q 048830 65 QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAAR 144 (551)
Q Consensus 65 ~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 144 (551)
-.|++.+|+.+..+-.+.+.. ....|..-..+.-..|+.+.+-.++.++-+..-.++..++-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 368888888888876666542 234555666677777888888888888777543566666777777788888888887
Q ss_pred HHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 048830 145 SVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221 (551)
Q Consensus 145 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 221 (551)
.-++++.+ .++........+|.+.|++.....++.+|.+.|+--|+.. .+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~---------- 226 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR---------- 226 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH----------
Confidence 77665543 5667777788888888888888888888887775433321 00
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048830 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298 (551)
Q Consensus 222 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 298 (551)
....+|+.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ..+
T Consensus 227 -le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 227 -LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred -HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 0122344444444444444444445555552 35666666777777888888888888887777666652 222
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~ 376 (551)
-.+.+.++.+.-++..+.-.+.++-.| ..+..|...|.+.+.+.+|.+.|+.+++. +...|+-+..++.+.|+.++
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 345566666666666666655444444 45566666666666666666666665555 66666666666666666666
Q ss_pred HHHHHHHHHh
Q 048830 377 GEIAMKNLVQ 386 (551)
Q Consensus 377 a~~~~~~~~~ 386 (551)
|....++.+.
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-11 Score=109.89 Aligned_cols=196 Identities=14% Similarity=0.083 Sum_probs=158.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
....+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667778888888888888888887653 346677788888888999999999998888753 3345667777888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
+...|++++|...++...+..........+..+...+...|++++|.+.+++++.. +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988764222224456777888899999999999999885554 677888889999999999999
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...++++.+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-10 Score=109.85 Aligned_cols=262 Identities=13% Similarity=0.031 Sum_probs=212.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048830 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALV 232 (551)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 232 (551)
.++...-.-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .+....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 455555666677778899999999999887653 455555666666788888877777776677665 345678899999
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 309 (551)
--|.-.|+.++|++.|.+...- -...|-.+...|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 9999999999999999987643 3468999999999999999999999887764 12223334445567888999999
Q ss_pred HHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC----------CHHHHHHHHHHHHhcCcHHHHH
Q 048830 310 GVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS----------DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 310 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
|.++|.+.. ++-| |+..++-+.-.....+.+.+|..+|+.++.. -..+++.|..+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999885 6777 6777777877788889999999999875522 3456888999999999999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..+++++.+.|.++.+|..++-+|...|+.+.|...|.+...
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-09 Score=98.68 Aligned_cols=319 Identities=12% Similarity=0.074 Sum_probs=191.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CChh------HHHHHHH
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLV------SWNSIIS 163 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~------~~~~li~ 163 (551)
+|..=++.+ -.++.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||.. +...|..
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 343333333 2478899999999998843 44566777899999999999999999988765 5432 3455677
Q ss_pred HHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcC
Q 048830 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV----YVGNALVDMYAKCG 239 (551)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g 239 (551)
-|...|-++.|..+|..+.+.+. --.....-++..|-...+|++|..+-..+.+.+-++.. ..|.-|...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 88899999999999998877542 23345667788888888888888888888876644432 23444555555556
Q ss_pred CHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 048830 240 NLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316 (551)
Q Consensus 240 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 316 (551)
+.+.|..++.+..+. .+.+--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++..++..
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666666665432 22233334455666666666666666666653333334455555666666666666666655
Q ss_pred hHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 317 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
+.+. .++...-..+.+ .-....-.+.|...+.+-+...|.-...|.
T Consensus 275 ~~~~---~~g~~~~l~l~~-------------------------------lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 275 AMET---NTGADAELMLAD-------------------------------LIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred HHHc---cCCccHHHHHHH-------------------------------HHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 5432 222222222222 222223344455555555555565333333
Q ss_pred HHHHHhh--hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCC
Q 048830 397 LLATIYA--CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDK 446 (551)
Q Consensus 397 ~l~~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~ 446 (551)
.+-.-.. ..|++.+...++..|....++..|.+..-.-+=+.|.|.-.+.
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CP 372 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCP 372 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCC
Confidence 3332222 3356777788888887666666655433333334455543333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-10 Score=113.31 Aligned_cols=230 Identities=21% Similarity=0.206 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEM-----GF-VESV-YVGNALVDMYAKCGNLDSAFCVFSRMRK--------R 254 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~ 254 (551)
..|...+...|...|+++.|..+++..++. |. .|.. ...+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346777889999999999999999988775 21 2332 2344577899999999999999998752 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 048830 255 ---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-----GF-HPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK 324 (551)
Q Consensus 255 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (551)
-..+++.|..+|...|++++|..++++..+- |. .|+. .-++.+...|...+.+++|..+++...+.+.-.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357788888999999999999888876541 22 2333 335667778899999999999999887765422
Q ss_pred C--C----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Q 048830 325 P--G----IKHYGCLVDLYGRAGKLEKALEVINTSSPS-----------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387 (551)
Q Consensus 325 p--~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 387 (551)
| + ..+++.|..+|...|++++|++++++++.. .....+.|...|.+.++.++|..+|.....+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2 2 467899999999999999999999886643 3556778889999999999999999888764
Q ss_pred ----cCCC---cchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 388 ----EAAS---AGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 388 ----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+|+. ..+|..|+.+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 4578899999999999999999988764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-09 Score=100.35 Aligned_cols=276 Identities=14% Similarity=0.106 Sum_probs=198.3
Q ss_pred CCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHH
Q 048830 137 NGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 213 (551)
.|++..|+++..+-.+ ..+..|..-+.+-.+.|+.+.+-.++.+.-+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777777777766443 2333444445556667778888887777766533455556666666677777778887777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 214 RIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD-----------VLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 214 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
..+.+.+ +-++.+......+|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777765 3356677777888888888888888888877532 246777777666666666655666665
Q ss_pred HHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhc---CCCCHH
Q 048830 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS---SPSDPV 359 (551)
Q Consensus 283 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~ 359 (551)
... .+-+...-.+++.-+.+.|+.++|.++..+..++ +.+|+. ..++ ...+-++...-++..++. .|.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 543 3445556667888889999999999999999887 666662 1111 223444444433333332 555999
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+.+|...|.+++.+.+|...++.++...|. ...|..++.++.+.|+.++|...+++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999998887 77999999999999999999999987763
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-09 Score=113.46 Aligned_cols=260 Identities=12% Similarity=-0.016 Sum_probs=186.0
Q ss_pred CChhHHHHHHHHHHh-----cCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHH---------hcCChHHHHHHHHHHH
Q 048830 153 RDLVSWNSIISCYTQ-----ASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCA---------HVGALNMGIFLHRIAC 217 (551)
Q Consensus 153 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 217 (551)
.+...|...+.+-.. .+.+++|+.+|++..+. .|+.. .+..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556566665322 13467899999998764 45443 4444444333 2244789999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-h
Q 048830 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI-T 293 (551)
Q Consensus 218 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 293 (551)
+.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 875 33577888888999999999999999998764 3 4667888899999999999999999999885 44432 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCK 369 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~ 369 (551)
+..++..+...|++++|...++++.+. ..| +...+..+..+|...|++++|...+.+..+. +...++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566688999999999988653 235 3455777888899999999999999984444 4555666667777
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
..| +.|...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4788888887775433333333477788888888877766 7776543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=83.70 Aligned_cols=50 Identities=38% Similarity=0.656 Sum_probs=47.5
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 048830 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303 (551)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 303 (551)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.8e-12 Score=83.84 Aligned_cols=50 Identities=32% Similarity=0.515 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 153 RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-09 Score=104.80 Aligned_cols=387 Identities=15% Similarity=0.045 Sum_probs=232.5
Q ss_pred hccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCC----ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC
Q 048830 13 NKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNP----QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD 88 (551)
Q Consensus 13 ~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd 88 (551)
..|+.|+.++|.+||.-||.. |+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+. . |-
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~--gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e-p~ 82 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTK--GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E-PL 82 (1088)
T ss_pred HhcCCCchhhHHHHHHHHccc--CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C-Cc
Confidence 679999999999999999999 9999998 88877632 3445677777766666665544 2 66
Q ss_pred hhhHHHHHHHHhccCChHH---HHHHHHHHH----HhCC-----------------CCChhHHHHHHHHHHhCCCHHHHH
Q 048830 89 TFTFTFTLKACERVKALNK---CQELHGFVI----RSGY-----------------ERCVVVSTNLMRGYAANGVIEAAR 144 (551)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~y~~~g~~~~A~ 144 (551)
..||..|+.+|...||+.. .++.+..+. ..|+ -||.. ..+....-.|-++.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 6677777777777776543 222111111 1111 11211 1222222333344444
Q ss_pred HHhccCC---------------------------------C-CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCH
Q 048830 145 SVFDNMP---------------------------------E-RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190 (551)
Q Consensus 145 ~~~~~m~---------------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 190 (551)
+++..++ + ++..+|.+.+.+-.-+|+.+.|..++.+|++.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 4432222 1 56777888888888888899999999999888888888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH-----------HHHhcCC------
Q 048830 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC-----------VFSRMRK------ 253 (551)
Q Consensus 191 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~-----------~~~~~~~------ 253 (551)
.-|..++-+ .++...+..+..-|...|+.|+..|+.-.+-...++|....+.+ +...+..
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 877777654 77777788888888888888888777655544444332211100 0000000
Q ss_pred -----------------------CCHhHHHHHHHHHH--------------------hcCC-----hHHHHHHHHHHHHc
Q 048830 254 -----------------------RDVLSWNSMIVGYG--------------------VHGR-----GDEAISFFKQMLMA 285 (551)
Q Consensus 254 -----------------------~~~~~~~~li~~~~--------------------~~g~-----~~~A~~~~~~m~~~ 285 (551)
....+|...+...- ..|+ ...+.++|.+....
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 00112222111100 0110 11122333322110
Q ss_pred ----------C-------------------CCCCHh----------------------------hHHHHHHHHhccCCHH
Q 048830 286 ----------G-------------------FHPDSI----------------------------TFLGLLCGCSHQGLVE 308 (551)
Q Consensus 286 ----------g-------------------~~p~~~----------------------------t~~~ll~~~~~~g~~~ 308 (551)
| ..||.. .-+.++..|+..-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 112111 1122333333333333
Q ss_pred HHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
+++..-+.. +. -.- ...|..||+.+.....++.|..+.++ +.. |..-+..+.+...+++....+..++
T Consensus 477 K~l~~~eky-e~-~lf--~g~ya~Li~l~~~hdkle~Al~~~~e-~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 477 KILCDEEKY-ED-LLF--AGLYALLIKLMDLHDKLEYALSFVDE-IDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHH-HH-HHh--hhHHHHHhhhHHHHHHHHHHHhchhh-hcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 333322222 11 111 25688999999999999999999988 544 6667788889999999999999999
Q ss_pred HHHHhhc---CCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 382 KNLVQLE---AASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 382 ~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
+.+.+.- |.......-+.+.-+..|+.+...++.+-+...|+..
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8887743 3334566677888888999999999999998888866
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-09 Score=109.25 Aligned_cols=85 Identities=18% Similarity=0.120 Sum_probs=50.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhh
Q 048830 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333 (551)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 333 (551)
+++.++.+.+.+-.-.|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..++..|... |+.|+.+|+.-.
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 56666666666666666666666666666666666666655555544 55555555555555443 666666666655
Q ss_pred hHHHhhcCC
Q 048830 334 VDLYGRAGK 342 (551)
Q Consensus 334 i~~~~~~g~ 342 (551)
+-.+...|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 555444444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-08 Score=95.88 Aligned_cols=339 Identities=12% Similarity=0.018 Sum_probs=215.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD-TFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRG 133 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~ 133 (551)
+.+...-|.++|++++|++.|.+.+... || +.-|.....+|...|+++++.+--...++. .|+ +..+.--..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 3444556788899999999999988765 77 677888888888899998888877776663 444 3345555567
Q ss_pred HHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH---------hhhC--CcccCHHHHHHHHHHHHh
Q 048830 134 YAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER---------MRFE--DVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~--~~~p~~~t~~~ll~~~~~ 202 (551)
+-..|++++|..= +|-..+..++....-.--+.+++.+ |.+. .+-|......+....+..
T Consensus 193 ~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 193 HEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 7777777776532 1222223332222222222222221 1211 233444444443333311
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcC-------CCC---------HhHHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC-GNLDSAFCVFSRMR-------KRD---------VLSWNSMIVG 265 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~-------~~~---------~~~~~~li~~ 265 (551)
.-.+ .+...+...|...-..+=..|... ..+..|...+.+-. ..+ ..+...-..-
T Consensus 264 ~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 264 DPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred cccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 0000 000000001111111111111110 12233333322211 111 2222222334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLE 344 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 344 (551)
+.-.|+.-.|.+-|+..+.....++.. |.-+...|....+.++.++.|+... .+.| ++.+|..-.+++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHH
Confidence 556789999999999999864333332 7777788999999999999999886 4666 6888999999999999999
Q ss_pred HHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 345 KALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 345 ~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+|..=|++++.. ++..|-.+.-+..+.+.+++++..|+...+.-|+.+..|...+.++..++++++|.+.++...+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999997766 6666767777777788999999999999999999999999999999999999999999998865
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-09 Score=98.01 Aligned_cols=192 Identities=13% Similarity=-0.021 Sum_probs=113.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
...+..+...+...|++++|.+.|++.....+ .+...+..+...+...|++++|.+.++...+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 45677777788888888888888888776653 345566677777777888888888887777654 344556666667
Q ss_pred HHHhCCCHHHHHHHhccCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChH
Q 048830 133 GYAANGVIEAARSVFDNMPE-----RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207 (551)
Q Consensus 133 ~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 207 (551)
.|...|++++|.+.|++... .....+..+...+...|++++|...|.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777766543 122345555555666666666666666555432 112334444445555555555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 048830 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFS 249 (551)
Q Consensus 208 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 249 (551)
+|...++...+. .+.+...+..+...+...|+.++|..+++
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555554443 12223333344444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-09 Score=109.24 Aligned_cols=208 Identities=11% Similarity=-0.054 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh---------ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 69 PLQAIFYYNHMLMASLSRPDTFTFTFTLKACE---------RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 69 ~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
.++|+.+|++..+..+ -+...|..+..++. ..+++++|...++++++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4566677776666553 12334443333322 1233566666666666543 3345555556666666666
Q ss_pred HHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 048830 140 IEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 140 ~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
+++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 6666666665543 2 23455556666666666666666666665532 2211 122223334445555666666555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
+.+...+.++..+..+..+|...|+.++|.+.+.++... +...++.+...|...| ++|...++.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 554332223334455555555566666666655554431 2223333444444444 24444444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=99.32 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=157.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048830 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238 (551)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 238 (551)
+.|..+|.+.|.+.+|...|+.-.+. .|-..||..+-.+|.+..+++.|..++.+-++. ++-++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777777778777777777776654 455556666777777777777777777766654 233444444555666666
Q ss_pred CCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 048830 239 GNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315 (551)
Q Consensus 239 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 315 (551)
++.++|.++++...+ .++.+...+..+|...++++-|+.+|+++...|+. +...|+.+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777766654 24444445555666667777777777777666643 44555666666666666666666555
Q ss_pred HhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 316 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
+.... .-.|+ + -..+|..|.....-.||+..|.+.|+-++..+|++..++
T Consensus 383 RAlst-at~~~------------------~-----------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 383 RALST-ATQPG------------------Q-----------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHHhh-ccCcc------------------h-----------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 55432 11111 1 355677777777788999999999999999999999999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 396 VLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+.|+-.-.+.|++++|..+++..++..
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999887643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-07 Score=88.30 Aligned_cols=365 Identities=8% Similarity=-0.020 Sum_probs=241.8
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHhcCCCC-ChhhHHHHHHHHHcCCC--hhH-------------HHHHHHHHHHcCCC
Q 048830 22 HGEWLLNSYAISVSSSLSYAQLLFNQIQNP-QTQAWNSLIRAFAQSLS--PLQ-------------AIFYYNHMLMASLS 85 (551)
Q Consensus 22 ~~~~li~~~~~~~~g~~~~A~~lf~~~~~~-~~~~~~~li~~~~~~g~--~~~-------------A~~l~~~m~~~~~~ 85 (551)
.--..+..|-.. ++-+.|.....+.++. ...--|.|+.-+-+.|- .++ |++.+.-..+.++.
T Consensus 99 ~~r~~aecy~~~--~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 99 QRRRAAECYRQI--GNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHH--ccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 444566677777 7888888888777653 33333444443333321 111 12222222222211
Q ss_pred -------------C-CChhhHHHHHHHHhc--cCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCCHHHHHHHhc
Q 048830 86 -------------R-PDTFTFTFTLKACER--VKALNKCQELHGFVIRS-GYERCVVVSTNLMRGYAANGVIEAARSVFD 148 (551)
Q Consensus 86 -------------~-pd~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 148 (551)
. |+..+....+.+++. .++-..+.+.+..+... -++.|+....++.++|...|+.++|+..|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 1 333344444555443 34444555555544433 367788889999999999999999999999
Q ss_pred cCCCCChhHHHH---HHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 048830 149 NMPERDLVSWNS---IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESV 225 (551)
Q Consensus 149 ~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 225 (551)
+...-|+.+... -.-.+.+.|+++....+...+.... +-....|-.-+..+-..++++.|..+-++.++.. +-+.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccc
Confidence 876544333222 2333457788888777777665432 1222233333344446677888888877777654 2234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH-HHH
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMR--K-RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL-CGC 301 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~ 301 (551)
..+-.-...+...|++++|.-.|+... . -+..+|.-++.+|...|+..+|..+-+..... ++-+..+...+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 444444567788899999999998765 3 47889999999999999999999887766653 334555555442 223
Q ss_pred h-ccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHH
Q 048830 302 S-HQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 302 ~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a 377 (551)
. ...--++|..+++..+ .+.|+ ....+.+..++...|..+++..++++.+.. |....+.|...++..+.+++|
T Consensus 414 ~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 2233578999888775 56775 566678888999999999999999997766 999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcch
Q 048830 378 EIAMKNLVQLEAASAGD 394 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~ 394 (551)
...|..++.++|++..+
T Consensus 491 m~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHhcCccchHH
Confidence 99999999999997543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-08 Score=99.06 Aligned_cols=396 Identities=13% Similarity=0.032 Sum_probs=263.7
Q ss_pred CCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH
Q 048830 16 RQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92 (551)
Q Consensus 16 ~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~ 92 (551)
+.-|+.+|..|.-+..++ |+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-.......+|...+
T Consensus 319 ~qnd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 456889999999999999 999999999997653 356679999999999999999999998877665331344444
Q ss_pred HHHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhC-----------CCHHHHHHHhccCCC---C
Q 048830 93 TFTLKACE-RVKALNKCQELHGFVIRSG--Y--ERCVVVSTNLMRGYAAN-----------GVIEAARSVFDNMPE---R 153 (551)
Q Consensus 93 ~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~~---~ 153 (551)
-..-+.|. +.+.++++..+-.+++... . ...+..|..+.-+|... ....++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444454 4577888888777776621 1 12233444455455432 123456666766643 2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchhHHHHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALV 232 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li 232 (551)
|+.+--.+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++.+|..+.+..... |. |-.....-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhh
Confidence 333333345557788899999999999888766777778888888888889999999888776653 21 111111111
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------------------------------CC-HhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRK-------------------------------RD-VLSWNSMIVGYGVHGRGDEAISFFK 280 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~~~g~~~~A~~~~~ 280 (551)
..-..-++.++|......+.. .+ +.++..+..- .. -+...+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-~a-~~~~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-VA-SQLKSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-HH-hhhhhcccccc
Confidence 111223444444332222110 01 1122221111 11 01000000000
Q ss_pred HHHHcCCC--CCH------hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHh
Q 048830 281 QMLMAGFH--PDS------ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVIN 351 (551)
Q Consensus 281 ~m~~~g~~--p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (551)
|...-+. |+. ..+......+...+..++|...+.+.. ++.| ....|......+...|.+++|.+.|.
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111122 221 124455567788899999998888775 4445 67778888889999999999999998
Q ss_pred hcCCC---CHHHHHHHHHHHHhcCcHHHHHH--HHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 352 TSSPS---DPVLWRTLLGSCKIHRNVEIGEI--AMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 352 ~~~~~---~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.++.. ++.+..++...+...|+...|.. ++..+++.+|.++..|..|+.++.+.|+.++|...|......
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 86654 88889999999999999888888 999999999999999999999999999999999999877653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-09 Score=92.18 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHH
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDL 336 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 336 (551)
...+.-+|.+.|+...|..-+++..+. .|+ ..++..+...|.+.|..+.|.+.|+... .+.| +..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 445667788888888888888888875 444 4677778888888888888888888886 4566 56778888888
Q ss_pred HhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHH
Q 048830 337 YGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 337 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 411 (551)
+|..|++++|...|++++.. -..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++.+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88888999999998887765 6778888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 048830 412 ARTRKLIKSNGI 423 (551)
Q Consensus 412 ~~~~~~m~~~g~ 423 (551)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-09 Score=101.25 Aligned_cols=147 Identities=11% Similarity=-0.044 Sum_probs=71.1
Q ss_pred cCChHHHHHHHHHhhhCC-cccC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 048830 168 ASFHLEALKLYERMRFED-VGLD--GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSA 244 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 244 (551)
.+..+.++.-+.++.... ..|+ ...|......+...|+.++|...+..+++.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345555666665555321 1121 1234444445555566666666555555543 22345555555555566666666
Q ss_pred HHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 245 FCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 245 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
.+.|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+..
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 555555532 2 3345555555555555555555555555543 233221111111222344555555555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-08 Score=93.57 Aligned_cols=221 Identities=7% Similarity=-0.115 Sum_probs=127.9
Q ss_pred CCCHHHHHHHhccCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHH
Q 048830 137 NGVIEAARSVFDNMPE-------RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 209 (551)
.+..+.++.-+.++.. .....|..+...|...|++++|...|++..+.. +.+...|..+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3555666666655543 113457777777888888888888888777643 23456777777788888888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048830 210 IFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287 (551)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (551)
...++.+++... .+..++..+..+|...|++++|.+.|+...+ |+..............++.++|...|++.... .
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 888888877542 2356677777778888888888888877654 32211111122234566788888888665533 2
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q 048830 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGS 367 (551)
Q Consensus 288 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 367 (551)
.|+... ..+. ....|+...+ +.++.+.+. +..++. + -+.....|..+...
T Consensus 196 ~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~--~~~~~~--------------------l----~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 196 DKEQWG-WNIV--EFYLGKISEE-TLMERLKAG--ATDNTE--------------------L----AERLCETYFYLAKY 245 (296)
T ss_pred CccccH-HHHH--HHHccCCCHH-HHHHHHHhc--CCCcHH--------------------H----HHHHHHHHHHHHHH
Confidence 333221 1222 2223444333 234444321 111100 0 00123456666666
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+...|+.++|...|+++++.+|.
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCc
Confidence 66777777777777777777654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-07 Score=92.09 Aligned_cols=286 Identities=13% Similarity=0.037 Sum_probs=199.8
Q ss_pred HHHHHcCCCCChHHHHHHHhcCCC--CChhh-HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-c-
Q 048830 27 LNSYAISVSSSLSYAQLLFNQIQN--PQTQA-WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACE-R- 101 (551)
Q Consensus 27 i~~~~~~~~g~~~~A~~lf~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~-~- 101 (551)
...+... |++++|+..++.-.. .|..+ .......+.+.|+.++|...|..++..+ ||...|-..+..+. .
T Consensus 11 ~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhh
Confidence 4566778 999999999987543 45444 4556688999999999999999999988 67776655555444 1
Q ss_pred ----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH-HHHHHhccCCCCCh-hHHHHHHHHHHhcCChHHHH
Q 048830 102 ----VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE-AARSVFDNMPERDL-VSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 102 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~ 175 (551)
..+.+...++++.+...- |.......+.-.+..-..+. .+...+..+..+.+ .+++.|-..|.......-..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 235677788888876652 33322222222222222333 34444455555554 46777777777665555556
Q ss_pred HHHHHhhhC----C----------cccCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhc
Q 048830 176 KLYERMRFE----D----------VGLDG--FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES-VYVGNALVDMYAKC 238 (551)
Q Consensus 176 ~~~~~m~~~----~----------~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~ 238 (551)
+++...... + -.|.. .++..+...|-..|+.++|.++.+..++.. |+ +..|..-...|-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 666655322 1 12333 355666777889999999999999999874 44 77888889999999
Q ss_pred CCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh--------HHHHHHHHhccCCH
Q 048830 239 GNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSIT--------FLGLLCGCSHQGLV 307 (551)
Q Consensus 239 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~~~~~~g~~ 307 (551)
|++.+|.+.++....- |-..=+-.+..+.+.|+.++|.+++......+..|-... ......+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999988764 444556677788999999999999999988765443322 24556789999999
Q ss_pred HHHHHHHHHhHHhc
Q 048830 308 EEGVEYFHMMVSRY 321 (551)
Q Consensus 308 ~~a~~~~~~~~~~~ 321 (551)
..|++.|..+.+.+
T Consensus 322 ~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 322 GLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-08 Score=95.27 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=122.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 60 i~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
.+-+-..+++++..++++...+..+ ++...+..=|..+...|+..+-..+=..+++. .|..+.+|-++.--|.-.|.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 3344555666666666666666554 34444444444555555555544444444443 34455566666666666666
Q ss_pred HHHHHHHhccCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 140 IEAARSVFDNMPERD---LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIA 216 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 216 (551)
..+|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+. ++-..--+.-+.--|.+.++.+.|.++|.++
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 666666665544322 235666666666666666666655443321 0111111122223344555666666666555
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048830 217 CEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR----------DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286 (551)
Q Consensus 217 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (551)
.... +.|+.+.+-+.-+....+.+.+|..+|+....+ -..+++.+..+|.+.+.+++|+..|++.....
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 5432 334555555555555555555555555543310 11223334444444444444444444444321
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 287 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
+-|..|+.++.-.|...|+++.|...|.+.
T Consensus 486 -~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 486 -PKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred -CCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 223334444444444444444444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-06 Score=83.51 Aligned_cols=389 Identities=12% Similarity=0.059 Sum_probs=230.8
Q ss_pred cHHHHHHHHHHcCCCCChHHHHHHHhcCC-----CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 048830 21 IHGEWLLNSYAISVSSSLSYAQLLFNQIQ-----NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFT 95 (551)
Q Consensus 21 ~~~~~li~~~~~~~~g~~~~A~~lf~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l 95 (551)
..|-..+....+. |++..-+..|++.. ..-...|...+......|-++-++.+|++-++..+ ..-.--
T Consensus 103 RIwl~Ylq~l~~Q--~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P-----~~~eey 175 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQ--GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP-----EAREEY 175 (835)
T ss_pred HHHHHHHHHHHhc--chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH-----HHHHHH
Confidence 3444455555566 78888888887532 12345688888888888888888888888877543 234455
Q ss_pred HHHHhccCChHHHHHHHHHHHHh------CCCCChhHHHHHHHHHHhCCCHH---HHHHHhccCCC--CC--hhHHHHHH
Q 048830 96 LKACERVKALNKCQELHGFVIRS------GYERCVVVSTNLMRGYAANGVIE---AARSVFDNMPE--RD--LVSWNSII 162 (551)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~~~~m~~--~~--~~~~~~li 162 (551)
+..++..+++++|.+.+...+.. ..+.+-..|..+-+..++.-+.- ....+++.+.. +| ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 66667778888887777665421 11333444444444444433221 12233333332 22 23466666
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCccc---------------------------------CHH-------HHHHHHH----
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGL---------------------------------DGF-------TLVCLLS---- 198 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p---------------------------------~~~-------t~~~ll~---- 198 (551)
.-|.+.|.+++|.++|++....-+.. +.. +|..+++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 66666666666666655543221110 000 1111110
Q ss_pred --------------------HHHhcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 199 --------------------SCAHVGALNMGIFLHRIACEMGFVES------VYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 199 --------------------~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
.-...|+..+....+.++++. +.|. ...|..+.+.|-..|+++.|..+|++..
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 001123344445556555553 1221 3467788899999999999999999987
Q ss_pred CCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----------CCHh------hHHHHHHHHhccCCHH
Q 048830 253 KRD-------VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-----------PDSI------TFLGLLCGCSHQGLVE 308 (551)
Q Consensus 253 ~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~------t~~~ll~~~~~~g~~~ 308 (551)
+-+ ..+|-.-...-.++.+++.|+.++++.....-. +... .|...+..--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 632 245666666667888999999988877642111 1111 2333333334456777
Q ss_pred HHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHh---cCcHHHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKI---HRNVEIGEIA 380 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~---~g~~~~a~~~ 380 (551)
....+++.+..-.-..|.+ .-.....+-...-++++.++|+++++. --.+|++.+.-+.+ ....+.|..+
T Consensus 495 stk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 7788888876542223332 122223344567789999999998877 45678887755543 3479999999
Q ss_pred HHHHHhhcCCCc--chHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 381 MKNLVQLEAASA--GDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 381 ~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
|+++++.-|+.. ..|...+..-.+-|....|.+++++..
T Consensus 573 FEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 573 FEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999877532 344555555566688888888888753
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-09 Score=95.16 Aligned_cols=220 Identities=13% Similarity=-0.002 Sum_probs=110.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--CChhH-HHHHHHHHHhcCC
Q 048830 94 FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVS-WNSIISCYTQASF 170 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~-~~~li~~~~~~g~ 170 (551)
.+.++|.+.|.+.+|...++..++. .|-+.+|..|-.+|.+-.+...|+.+|.+-.+ |-.+| ..-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3444555555555555555444443 33444444455555555555555555544433 22222 2334444444555
Q ss_pred hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 171 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
.++|+++|+...+.. ..+.....++...|.-.++++.|..++..+++.|.. ++..|+.+.-+|.-.+++|-+...|.+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555554432 223334444444444555555555555555555532 455555555555555555555555554
Q ss_pred cC----CCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 251 MR----KRD--VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 251 ~~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.. .++ ...|-.+.......|+..-|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++...
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 33 122 2345555555555566666666665554432 1223455555555566666666666666553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=101.53 Aligned_cols=229 Identities=19% Similarity=0.148 Sum_probs=152.2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CCChh-HHHHHHHHHHhCCCHHHHHHHhccCCC----------
Q 048830 90 FTFTFTLKACERVKALNKCQELHGFVIRS-----GY-ERCVV-VSTNLMRGYAANGVIEAARSVFDNMPE---------- 152 (551)
Q Consensus 90 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~---------- 152 (551)
.+...+...|...|+++.|..+++..++. |. .|.+. ..+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35566888899999999999999888765 21 22322 234466788888888888888877642
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhC-----Cc-ccCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHh---CC
Q 048830 153 R-DLVSWNSIISCYTQASFHLEALKLYERMRFE-----DV-GLDGF-TLVCLLSSCAHVGALNMGIFLHRIACEM---GF 221 (551)
Q Consensus 153 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~ 221 (551)
| -..+++.|...|.+.|++++|..+++...+. |. .|+.. -++.+...|...+.+++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 2346778888888888888887777765321 11 12222 4555666777888888888887766552 11
Q ss_pred CCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 048830 222 VES----VYVGNALVDMYAKCGNLDSAFCVFSRMRKR-----------DVLSWNSMIVGYGVHGRGDEAISFFKQMLM-- 284 (551)
Q Consensus 222 ~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 284 (551)
.++ ..+++.|...|.+.|++++|+++|++.... .-...+.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 121 356778888888888888888888776421 123556677777777777777777765432
Q ss_pred --cCC-CCCH-hhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 285 --AGF-HPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 285 --~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.|. .|+. .+|..|...|...|+++.|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 1232 567777777777777777777776664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-05 Score=79.09 Aligned_cols=141 Identities=22% Similarity=0.194 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCCHHHHHHHHH--------HhHHhcCCCCCccchhhhhHHHhhc
Q 048830 271 RGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGLVEEGVEYFH--------MMVSRYNLKPGIKHYGCLVDLYGRA 340 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~ 340 (551)
.+.+|.+++...-+. .|+. ......+......|+++.|.+++. .+.+. +. .+.+...++.+|.+.
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKI 430 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhc
Confidence 466777777766654 3443 444556666788999999999998 44321 33 344566788888888
Q ss_pred CCHHHHHHHHhhcCC-------C---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 341 GKLEKALEVINTSSP-------S---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 341 g~~~~A~~~~~~~~~-------~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
++-+.|..++.+++. . -..+|.-+...-.++|+.++|..+++++++.+|++..+...+..+|++. +.+.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHH
Confidence 876666666655332 2 2334444455556789999999999999999999999999999999988 5666
Q ss_pred HHHHHHH
Q 048830 411 VARTRKL 417 (551)
Q Consensus 411 a~~~~~~ 417 (551)
|..+-+.
T Consensus 510 a~~l~k~ 516 (652)
T KOG2376|consen 510 AESLSKK 516 (652)
T ss_pred HHHHhhc
Confidence 6665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-06 Score=83.23 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHh-
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS---MIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCS- 302 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~- 302 (551)
|..+++.--..|-++....+++++.+--+.|-.. ....+-.+.-++++.+.|++-+..--.|+. ..|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 3334444445566666666666655422111111 112233455566777776665544334554 33444444332
Q ss_pred --ccCCHHHHHHHHHHhHHhcCCCCCc--cchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCc
Q 048830 303 --HQGLVEEGVEYFHMMVSRYNLKPGI--KHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 303 --~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~ 373 (551)
....++.|..+|++.++ +.+|.. ..|-.....=-+-|....|..+++++-.. -...||..|.--...=-
T Consensus 560 rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 24478999999999987 666642 22222223334568888899999884433 45567777743322222
Q ss_pred HHHHHHHHHHHHhhcCCCc--chHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 374 VEIGEIAMKNLVQLEAASA--GDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+.....+|+++++.-|++. ......+.+-.+.|..+.|+.++.--.+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 4456788999998877753 3445667888889999999999875544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-07 Score=90.96 Aligned_cols=370 Identities=12% Similarity=0.057 Sum_probs=249.6
Q ss_pred HHcCCCCChHHHHHHHhcC---CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCCh
Q 048830 30 YAISVSSSLSYAQLLFNQI---QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD-TFTFTFTLKACERVKAL 105 (551)
Q Consensus 30 ~~~~~~g~~~~A~~lf~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd-~~~~~~ll~~~~~~~~~ 105 (551)
.... |+++.|..+|... .++|-+-|+.-..+|+..|++++|++=-.+-++.. |+ ...|+....++...|++
T Consensus 12 a~s~--~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 12 AFSS--GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hccc--ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccH
Confidence 3445 9999999999753 35688889999999999999999998777776665 54 35788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhcc------CCC-C------ChhHHHHHHHHHHhc----
Q 048830 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN------MPE-R------DLVSWNSIISCYTQA---- 168 (551)
Q Consensus 106 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~------m~~-~------~~~~~~~li~~~~~~---- 168 (551)
++|...|.+-++.. +.+...++.|.+++.-. . .+-+.|.. +.. | ....|..++..+-++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999988864 55677888888887111 0 11111111 000 0 112233333332211
Q ss_pred ------CChHHHHHHHHHh-----hhCC-------ccc------------C----------HHHHHHHHHHHHhcCChHH
Q 048830 169 ------SFHLEALKLYERM-----RFED-------VGL------------D----------GFTLVCLLSSCAHVGALNM 208 (551)
Q Consensus 169 ------g~~~~A~~~~~~m-----~~~~-------~~p------------~----------~~t~~~ll~~~~~~~~~~~ 208 (551)
.+...|...+... ...+ ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 1111222211110 0001 111 0 1123456667777778888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH----------hHHHHHHHHHHhcCChHHHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDV----------LSWNSMIVGYGVHGRGDEAISF 278 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~ 278 (551)
+.+-+....... .+..-++....+|...|.+.++...-+...+..- .+...+..+|...++++.|+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 888888888765 5666777788889998888877766555433211 1223344567777889999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc-cchhhhhHHHhhcCCHHHHHHHHhhcCCC-
Q 048830 279 FKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI-KHYGCLVDLYGRAGKLEKALEVINTSSPS- 356 (551)
Q Consensus 279 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 356 (551)
|.+....-..||.. .+....+++....+... -+.|.. .-...=...+.+.|++.+|...|.+++..
T Consensus 321 ~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 98876654444432 22233444444443332 334432 11122266778899999999999987766
Q ss_pred --CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 357 --DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 357 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|...|....-+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.|++..+.+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999887654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-07 Score=80.81 Aligned_cols=190 Identities=16% Similarity=0.061 Sum_probs=128.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhcc
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQ 304 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 304 (551)
.-|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|+.+.|.+.|++.... .|+ ....|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence 34556677777777777777776642 3456777777777777777777777777664 343 35556666666777
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
|.+++|.+.|+.........--..+|..++-+-.++|+++.|.+.|++++.. .+...-.+.......|++-.|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 7777777777777655222223556777777777777777777777775554 5556666666677777777777777
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 382 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
++.....+.........+.+-...|+.+.+.++-..+.+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777776666666777777777777777777766665554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.2e-08 Score=94.07 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=176.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 048830 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAI 276 (551)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 276 (551)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999988876 34688999999999999999999999998875 35667777788899999999999
Q ss_pred HHHHHHHHcCCC--------CCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHH
Q 048830 277 SFFKQMLMAGFH--------PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALE 348 (551)
Q Consensus 277 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (551)
..+++-+....+ ++..+-.. ..+.....+....++|-.+....+..+|+.+...|.-+|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887654210 01110000 12233334556677777776666766788889999999999999999999
Q ss_pred HHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 349 VINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 349 ~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
-|+.++.. |...||-|...+....+.++|+.+|.+++++.|.-..+...|+-.|...|.+++|.+.|-...
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99987766 999999999999999999999999999999999999999999999999999999999886654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-07 Score=91.75 Aligned_cols=263 Identities=15% Similarity=0.065 Sum_probs=154.1
Q ss_pred HHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-----
Q 048830 165 YTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC----- 238 (551)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~----- 238 (551)
+...|++++|++.+.+-.. ..+|.. .+......+.+.|+.++|..++..+++.++ .+..-|..|..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccccc
Confidence 3445555555555544222 122322 233334444555555555555555555441 2233333333333111
Q ss_pred CCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 048830 239 GNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315 (551)
Q Consensus 239 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 315 (551)
.+.+...++|+++.. |...+...+.-.+.....+ ..+..++..+...|+++ +|+.|-..|....+.+-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 134455555555543 1111111111111111112 23445666677777654 44444445555555555555555
Q ss_pred HhHHhc-------------CCCCCc--cchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 316 MMVSRY-------------NLKPGI--KHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 316 ~~~~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
...... .-.|+. .++.-+.+.|-..|++++|++++++++.. .+..|..-...+...|++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 544321 012333 24456678888999999999999988876 677788888999999999999
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCC-----ceeEEE
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTP-----GWSWIE 433 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----~~s~~~ 433 (551)
...++.+.++++.|...-.-.+..+.++|+.++|.+++....+.+..+.. .|.|.+
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 99999999999998888888888899999999999999988776653332 456753
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-07 Score=89.31 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=99.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCCH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH----QGLV 307 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~ 307 (551)
..+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. . +..+...+..++.. ...+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCchhH
Confidence 34566677777777777655 45555566677788888888888888888763 2 33444444444432 3357
Q ss_pred HHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcH-HHHHHHHHH
Q 048830 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNV-EIGEIAMKN 383 (551)
Q Consensus 308 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~-~~a~~~~~~ 383 (551)
.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++.+++.. ++.+...++......|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 888888888754 34456666777777777777777777777776655 666666666666666666 666777777
Q ss_pred HHhhcCCCc
Q 048830 384 LVQLEAASA 392 (551)
Q Consensus 384 ~~~~~p~~~ 392 (551)
+....|+.|
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-06 Score=76.54 Aligned_cols=380 Identities=11% Similarity=0.044 Sum_probs=239.7
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHH-HHHH
Q 048830 23 GEWLLNSYAISVSSSLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF-TLKA 98 (551)
Q Consensus 23 ~~~li~~~~~~~~g~~~~A~~lf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~-ll~~ 98 (551)
+++.+--+.+. .++++|.+++..-.+ ++....+.|..+|-...++..|-.+|+++-... |...-|.. -...
T Consensus 13 ftaviy~lI~d--~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRD--ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHH--hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 45566666777 899999999875543 366678888899999999999999999987654 55544432 2344
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHH----HHHHhCCCHHHHHHHhccCC-CCChhHHHHHHHHHHhcCChHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERCVVVSTNLM----RGYAANGVIEAARSVFDNMP-ERDLVSWNSIISCYTQASFHLE 173 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~ 173 (551)
+-+.+.+..|+.+...|... ++ ..+-.+ ......+++..+..+.++.+ +.+..+.+.......+.|++++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 55677888888888777432 22 222222 22346789999999999999 4677777777777889999999
Q ss_pred HHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-------------chh--------HHHHHH
Q 048830 174 ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE-------------SVY--------VGNALV 232 (551)
Q Consensus 174 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------------~~~--------~~~~li 232 (551)
|++-|+...+-+---....|+..+..| +.++.+.|.+...+++++|+.. |+. .-++++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999987755444556787766544 6788999999999999887532 111 112233
Q ss_pred -------HHHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 233 -------DMYAKCGNLDSAFCVFSRMRK-----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 233 -------~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
..+.+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-+.+.. +-...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 345678899999999988874 3667665543322 2345555555555555543 2345788888888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCC-CCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHH--HHHHhcCc--
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLK-PGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLL--GSCKIHRN-- 373 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll--~~~~~~g~-- 373 (551)
||+..-++.|-.++.+-... ... .+...|+.|=....-.-..++|.+-++. +.. ....-...+ .--+..++
T Consensus 320 yCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~-La~~l~~kLRklAi~vQe~r~~~dd~ 397 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKLDG-LAGMLTEKLRKLAIQVQEARHNRDDE 397 (459)
T ss_pred HhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 99888888887776543211 111 1233333322222334456666665555 322 000111111 11111111
Q ss_pred -HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 374 -VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 374 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...+.+-+++.+++- -.+...-+..|.+..++..+.++|..-.+
T Consensus 398 a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 398 AIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 223334444444443 12455667788888999999999876554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-05 Score=79.95 Aligned_cols=197 Identities=11% Similarity=-0.044 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH---
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT-FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN--- 129 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--- 129 (551)
..|..+...+...|+++.+...+.+........++..... .....+...|++++|...++...+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 3455555666666667766666666554433212222111 11223445677777777777777652 334434331
Q ss_pred HHHHHHhCCCHHHHHHHhccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCCh
Q 048830 130 LMRGYAANGVIEAARSVFDNMPE--RD-LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 206 (551)
+.......+..+.+.+.++.... |+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 12222234455555555544222 21 2233444556677777777777777776643 23344556666667777777
Q ss_pred HHHHHHHHHHHHhCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 207 NMGIFLHRIACEMGFV-ESV--YVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~-~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
++|...++...+.... ++. ..+..+...+...|++++|..+|++..
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777766654321 221 234456667777777777777777754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-06 Score=79.84 Aligned_cols=354 Identities=10% Similarity=0.042 Sum_probs=192.2
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--------------hC-------
Q 048830 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR--------------SG------- 119 (551)
Q Consensus 61 ~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------~g------- 119 (551)
.++.+-|++++|+..|.-+....- |+...+..+.-..--.|.+.+|.++-...-+ .+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 455666666666666666555332 4444444444333334555555444322110 00
Q ss_pred ----CCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--CChhHHHH-HHHHHHhcCChHHHHHHHHHhhhCCcccCHHH
Q 048830 120 ----YERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNS-IISCYTQASFHLEALKLYERMRFEDVGLDGFT 192 (551)
Q Consensus 120 ----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 192 (551)
+..+..-.-+|..+..-.-.+++|++++.++.. |+....|. |.-+|.+..-++-+.++++--.+. -||. |
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-t 219 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-T 219 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-H
Confidence 011112223444444444567788888877764 44444443 445667777777777766655543 2332 2
Q ss_pred HHHHHHHHHh----cCChHHHH--H----------HHHHHHHhCC------------CC-----chhHHHHHHHHHHhcC
Q 048830 193 LVCLLSSCAH----VGALNMGI--F----------LHRIACEMGF------------VE-----SVYVGNALVDMYAKCG 239 (551)
Q Consensus 193 ~~~ll~~~~~----~~~~~~a~--~----------~~~~~~~~g~------------~~-----~~~~~~~li~~y~~~g 239 (551)
+..=+.+|.. .|+..+.+ . ..+.+.+.++ -| -+..--.|+--|.+.+
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccc
Confidence 2222333321 12111111 1 1122222211 01 1122334555677888
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCCHHHHH
Q 048830 240 NLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR-------GDEAISFFKQMLMAGFHPDSI-TFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 240 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~ 311 (551)
++.+|..+..++....+.-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.. --.++.+++.-...+++.+
T Consensus 300 dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 300 DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 88888888887765555444433333444443 333444444433444443332 2334555566666788888
Q ss_pred HHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHH-HHHHhcCcHHHHHHHHHHHHh
Q 048830 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLL-GSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~ 386 (551)
-+++.+.. |=..-|. .--.+.++++..|.+.+|+++|-+ +.. |..+|.+++ .+|...+..+.|..+ +++
T Consensus 380 ~YlnSi~s-YF~NdD~-Fn~N~AQAk~atgny~eaEelf~~-is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk 453 (557)
T KOG3785|consen 380 TYLNSIES-YFTNDDD-FNLNLAQAKLATGNYVEAEELFIR-ISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLK 453 (557)
T ss_pred HHHHHHHH-HhcCcch-hhhHHHHHHHHhcChHHHHHHHhh-hcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHh
Confidence 88887743 2222233 333578889999999999999877 544 677777666 566777888776554 455
Q ss_pred hc-CCC-cchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 387 LE-AAS-AGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 387 ~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
.+ |.+ -......++-|.+.+.+--|.+.|..+...+..|
T Consensus 454 ~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 454 TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44 332 2334466788889999888999998887755544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-05 Score=78.51 Aligned_cols=388 Identities=12% Similarity=0.048 Sum_probs=214.8
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048830 36 SSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELH 112 (551)
Q Consensus 36 g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~ 112 (551)
|+.++|........ ..+-+.|..+.-.+-...++++|+..|......+. -|...+.-+.-.-++.++++......
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 67777777666443 24556677776666667777777777777776653 34444444443344556666666666
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-----CChhHHHHH------HHHHHhcCChHHHHHHHHHh
Q 048830 113 GFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-----RDLVSWNSI------ISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 113 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m 181 (551)
..+.+.. +.....|..+..++.-.|+...|..+.++... ++...+... .....+.|..++|++.+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 6655542 33445566666666677777777766654432 333333222 23345566667776666544
Q ss_pred hhCCcccCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHH-HHHHhcCCC--CH
Q 048830 182 RFEDVGLDGFTL-VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLDSAF-CVFSRMRKR--DV 256 (551)
Q Consensus 182 ~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~-~~~~~~~~~--~~ 256 (551)
... ..|...+ ..-...+.+.+++++|..++..++... ||..-| -.+..++.+-.+.-++. .+|....+. -.
T Consensus 212 e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 212 EKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 321 1222222 223344556777777777777777653 444333 33444444333333333 455544321 00
Q ss_pred hHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH----HHHHHHHhHHhcC---------
Q 048830 257 LSWNSMIVGYGVHG-RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE----GVEYFHMMVSRYN--------- 322 (551)
Q Consensus 257 ~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~--------- 322 (551)
..-.-+--...... -.+..-.++..+...|++|-...+.+| |-.....+- +..+...+ ...|
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L-~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSL-SGTGMFNFLDDGK 363 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhc-ccccCCCcccccc
Confidence 00000000011111 223334456666677766533333333 322221111 11111111 1111
Q ss_pred -CCCCcc--chhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHH---HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 323 -LKPGIK--HYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL---LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 323 -~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
-+|... ++-.++..|-+.|+++.|..+++.++...+..+... ...+...|++++|...++.+.+++..|...-.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 134433 345678888999999999999999887744444333 47788899999999999999999866554443
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHhCCCcc-----CCceeEEEE
Q 048830 397 LLATIYACTKDEEGVARTRKLIKSNGIKT-----TPGWSWIEI 434 (551)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~s~~~~ 434 (551)
--+.-..++++.++|.++.....+.|..- +..|.|..+
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 45666778899999999998887766421 235777644
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.5e-06 Score=93.12 Aligned_cols=323 Identities=12% Similarity=0.002 Sum_probs=205.9
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC----C----C--h--hHHHHHHHHHHh
Q 048830 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE----R----D--L--VSWNSIISCYTQ 167 (551)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~----~--~--~~~~~li~~~~~ 167 (551)
...|+++.+...+..+.......++.........+...|++++|...++.... . + . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666655442111122233334455666788999998888765421 1 1 1 112223345667
Q ss_pred cCChHHHHHHHHHhhhCCcccCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhc
Q 048830 168 ASFHLEALKLYERMRFEDVGLDG----FTLVCLLSSCAHVGALNMGIFLHRIACEM----GF-VESVYVGNALVDMYAKC 238 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~ 238 (551)
.|++++|...+++....-...+. .....+...+...|++++|...+...... |. .........+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999887653111121 23344555667899999999998887753 21 11123456677788899
Q ss_pred CCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HhhHHHHHHHHhc
Q 048830 239 GNLDSAFCVFSRMRK-------R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--GFHPD--SITFLGLLCGCSH 303 (551)
Q Consensus 239 g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~ 303 (551)
|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 1 1223445556677789999999999887653 11222 2344455667788
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCccch-----hhhhHHHhhcCCHHHHHHHHhhcCCC---CH----HHHHHHHHHHHhc
Q 048830 304 QGLVEEGVEYFHMMVSRYNLKPGIKHY-----GCLVDLYGRAGKLEKALEVINTSSPS---DP----VLWRTLLGSCKIH 371 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~ll~~~~~~ 371 (551)
.|+.+.|...++..............+ ...+..+...|+.+.|..++...... .. ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875421111111111 11224455689999999998773332 11 1244566788889
Q ss_pred CcHHHHHHHHHHHHhhcC------CCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 372 RNVEIGEIAMKNLVQLEA------ASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|+.++|...+++++.... ....++..++.++...|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999987531 123467788999999999999999998887643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-05 Score=89.32 Aligned_cols=361 Identities=9% Similarity=-0.077 Sum_probs=227.3
Q ss_pred HHHHHHHcCCCCChHHHHHHHhcCCCCChhh--HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcc
Q 048830 25 WLLNSYAISVSSSLSYAQLLFNQIQNPQTQA--WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102 (551)
Q Consensus 25 ~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~ 102 (551)
.....|... |++.+|..........+... .......+...|++..+...++.+...... .+..........+...
T Consensus 346 raa~~~~~~--g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~-~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 346 AAAEAWLAQ--GFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLL-ENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHC--CCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHh-cCcchHHHHHHHHHHC
Confidence 334445556 77777766665554432211 111223455677877777777665322111 2222233344445677
Q ss_pred CChHHHHHHHHHHHHhCC------CCC--hhHHHHHHHHHHhCCCHHHHHHHhccCCC----CCh----hHHHHHHHHHH
Q 048830 103 KALNKCQELHGFVIRSGY------ERC--VVVSTNLMRGYAANGVIEAARSVFDNMPE----RDL----VSWNSIISCYT 166 (551)
Q Consensus 103 ~~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~ 166 (551)
|+++++...+......-- .+. ......+...+...|++++|...+++..+ .+. .+++.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 899999999888765311 111 12223344566789999999998876532 222 34566777788
Q ss_pred hcCChHHHHHHHHHhhhC----Cc-ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCC--C-chhHHHHHHHH
Q 048830 167 QASFHLEALKLYERMRFE----DV-GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM----GFV--E-SVYVGNALVDM 234 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~ 234 (551)
..|++++|...+.+.... |- .+...++..+...+...|+++.|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999887642 11 111234455666778899999999998877653 221 1 23345566677
Q ss_pred HHhcCCHHHHHHHHHhcCC------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhH-----HHHHHH
Q 048830 235 YAKCGNLDSAFCVFSRMRK------R--DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PDSITF-----LGLLCG 300 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~~ 300 (551)
+...|++++|...+++... + ....+..+...+...|+.++|...+.+....... .....+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 8888999999999887642 1 1334555667788999999999999888652111 111111 112234
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCcc----chhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIK----HYGCLVDLYGRAGKLEKALEVINTSSPS---------DPVLWRTLLGS 367 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ll~~ 367 (551)
+...|+.+.|..++...... . ..... .+..+..++...|+.++|...+++++.. ...+...+..+
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 45578999999998765421 1 11111 1345677788999999999999885543 23456666788
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+...|+.++|...+.+++++...
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999997643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-05 Score=76.36 Aligned_cols=173 Identities=10% Similarity=0.003 Sum_probs=81.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhh-HHHhh-cC
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV-DLYGR-AG 341 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g 341 (551)
..+...|++++|.-.|+..+... +.+...|..|+.+|...|.+.+|.-.-+...+ -+..+..+.+.+. ..+.. ..
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCch
Confidence 34444555555555555544421 22334555555555555555555444444332 1222333333221 11111 11
Q ss_pred CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 342 KLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 342 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
--++|.+++++++.. -....+.+...|...|..+.+..++++.+...|+ ...+..|+..+...+.+.+|...|...
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 124455555554443 2223333444455555555555555555554444 334555555555555555555555444
Q ss_pred HhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048830 419 KSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466 (551)
Q Consensus 419 ~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 466 (551)
. ...|+.+...+-+..+.+.|+
T Consensus 498 L--------------------------r~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 498 L--------------------------RQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred H--------------------------hcCccchHHHHHHHHHHhccC
Confidence 3 334556666667777776665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-06 Score=81.20 Aligned_cols=298 Identities=9% Similarity=0.012 Sum_probs=138.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCCh-hHHHHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHH
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSGY-ERCV-VVSTNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCY 165 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 165 (551)
.|..+...+...++.+.+...+....+... .++. .........+...|++++|.+.+++..+ | |...++. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 445555555556666666555555544321 1121 1122223345566777777766665443 2 2233332 1122
Q ss_pred Hh----cCChHHHHHHHHHhhhCCcccCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 166 TQ----ASFHLEALKLYERMRFEDVGLDG-FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 166 ~~----~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
.. .+....+.+.+.. .....|+. .....+...+...|++++|...++...+.. +.+...+..+...|...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22 2333334443333 11122222 222334445556666666666666666643 2234455556666666666
Q ss_pred HHHHHHHHHhcCC-----CCH--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhH-H--HHHHHHhccCCHHH
Q 048830 241 LDSAFCVFSRMRK-----RDV--LSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPDSITF-L--GLLCGCSHQGLVEE 309 (551)
Q Consensus 241 ~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~~~ 309 (551)
+++|...+++..+ ++. ..|..+...+...|++++|..++++...... .+..... . .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 6666666665443 111 1233455556666666666666666543211 0111111 0 11111222222222
Q ss_pred HHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Q 048830 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387 (551)
Q Consensus 310 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 387 (551)
+.++ +++........+. ..........++...|+.+.|...++.+...
T Consensus 244 ~~~w------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 244 GDRW------------------------------EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHH------------------------------HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2111 1111111000000 1111123444555566666666666665542
Q ss_pred c-C--------CCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 388 E-A--------ASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 388 ~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
. . .........+.++...|++++|.+.+.......
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 294 ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 1 124455677888899999999999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.5e-08 Score=91.05 Aligned_cols=241 Identities=9% Similarity=-0.039 Sum_probs=158.6
Q ss_pred HHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 048830 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 243 (551)
-+.-.|++..++.-.+ .....-..+..+...+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777776555 222222223344555667777777765433 3332322 5555555555444433355566
Q ss_pred HHHHHHhcC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 244 AFCVFSRMR-KR----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 244 A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
+..-+++.. ++ +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665543 22 2222222234566789999999988652 345666678889999999999999999995
Q ss_pred HhcCCCCCccchhhhhHH----HhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 319 SRYNLKPGIKHYGCLVDL----YGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.+..|. +...|..+ +.-.+.+.+|..+|++ +.. ++.+.+.+..+....|++++|+.+++++++.+|.
T Consensus 159 ---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~E-l~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 159 ---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEE-LSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp ---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHH-HHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred ---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 344443 33334443 3334579999999998 433 7888888999999999999999999999999999
Q ss_pred CcchHHHHHHHhhhcCCh-hHHHHHHHHHHh
Q 048830 391 SAGDYVLLATIYACTKDE-EGVARTRKLIKS 420 (551)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 420 (551)
++.+...++-+....|+. +.+.+++.+++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999999998 667788888775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-05 Score=81.84 Aligned_cols=320 Identities=11% Similarity=0.063 Sum_probs=190.2
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
..+-+++|..+|.+. ..+....+.|+. .-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh
Confidence 334445555554432 233333333333 235556666665555544 5688899988889999988888744
Q ss_pred hhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------
Q 048830 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK------- 253 (551)
Q Consensus 181 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------- 253 (551)
. -|...|..++..+.+.|.+++-.+.+..+.+..-.|.. -+.||-+|++.+++.+-+++...-..
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVG 1201 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHh
Confidence 3 35668888999999999999988888888776655543 46788889988888877665532110
Q ss_pred ----------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 254 ----------------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 254 ----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
.++..|..+...+...|+++.|...-++. -+..||..+-.+|...+.+..|. |
T Consensus 1202 drcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i 1270 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I 1270 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h
Confidence 13445556666666666666666554432 24567777777777666554432 2
Q ss_pred HHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcch
Q 048830 318 VSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394 (551)
Q Consensus 318 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 394 (551)
.- ..+.....-..-|+..|...|.+++-+.+++.++.. ....|+-|.-.|.+.. +++-.+.++-.... ..
T Consensus 1271 CG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vN 1343 (1666)
T KOG0985|consen 1271 CG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VN 1343 (1666)
T ss_pred cC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cc
Confidence 11 122234445667788888888888888888776555 5666666666666553 44444444433321 11
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048830 395 YVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466 (551)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 466 (551)
.--+++++..+..|.+..-++..-.+.+-. ...+++- -...+.|.+..+|..++..+.--.+
T Consensus 1344 ipKviRA~eqahlW~ElvfLY~~y~eyDNA---a~tmm~h-------~teaw~~~~FKdii~kVaNvElyYk 1405 (1666)
T KOG0985|consen 1344 IPKVIRAAEQAHLWSELVFLYDKYEEYDNA---ALTMMEH-------PTEAWDHGQFKDIITKVANVELYYK 1405 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHhC-------ChhhhhhhhHHHHHHHHhhHHHHHH
Confidence 224566777777777777666554432110 0001000 0123457777777776665544443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-05 Score=73.61 Aligned_cols=328 Identities=11% Similarity=0.068 Sum_probs=183.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHH
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF-TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVV-STNLMRGYA 135 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~ 135 (551)
-+-..+.-.|++..|+.-|...++.+ |+.+ ++-.-...|...|+-.-|..=+..+++. .||-.. ..--...+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d---p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD---PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 45566677788888888888877644 3322 3333344566777777777777777663 566432 112234567
Q ss_pred hCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
+.|.++.|..-|+.+.+.++.- +....++.+.-..++-. .....+..+...|+...|......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 8888888888887776532200 00001111110011111 111122233345555555555555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 292 (551)
+++.. +.|...+..-..+|...|++..|+.-+.... ..+..+.--+-..+-..|+.+.++...++..+ +.||..
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 55542 3455555555666666666666655444332 23444444455555566666666666655554 345542
Q ss_pred hHHHH-------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCHHHHHHHHhhcC
Q 048830 293 TFLGL-------------LCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKLEKALEVINTSS 354 (551)
Q Consensus 293 t~~~l-------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 354 (551)
..... +......+.+.++....+...+. .|. ...+..+-.++...|++.+|++.-.+++
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 21110 11123345566666666655542 333 3445556677778888888887766644
Q ss_pred CC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 355 PS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 355 ~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
.. |+.++.--..+|.....++.|+.-|+++.+.++++..+-.- .+.|.++.++..+++.
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRDY 396 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccchH
Confidence 44 67777777888888889999999999999998887544332 3555555555544443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00011 Score=74.96 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHH-HHH
Q 048830 120 YERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT-LVC 195 (551)
Q Consensus 120 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ 195 (551)
+.-|+.+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+.+.-....-.|+..+ +..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455777777777788888888888888877653 3445677788888888887778887776554332343332 222
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHH
Q 048830 196 LLSSCA-HVGALNMGIFLHRIACE 218 (551)
Q Consensus 196 ll~~~~-~~~~~~~a~~~~~~~~~ 218 (551)
.-..|. +.+..+++..+-.+++.
T Consensus 399 asklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHH
Confidence 222222 33444554444444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-05 Score=79.87 Aligned_cols=356 Identities=15% Similarity=0.098 Sum_probs=228.6
Q ss_pred CCccHHHHHHH--HHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcC--------CCCC
Q 048830 18 AHEIHGEWLLN--SYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS--------LSRP 87 (551)
Q Consensus 18 ~~~~~~~~li~--~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------~~~p 87 (551)
-|..+-.++++ .|..- |+++.|.+-.+.+. +-..|..|.+.+.+..+.+-|.-.+-.|.... ...|
T Consensus 724 Cd~~TRkaml~FSfyvti--G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTI--GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEe--ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 36666677765 46666 99999988777664 46789999999999999988887777664321 1113
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CChhHHHHHHHHHH
Q 048830 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSIISCYT 166 (551)
Q Consensus 88 d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~ 166 (551)
+ .+=..+.-.....|.+++|+.+|.+..+.. .|=..|...|.+++|.++-+.-.. .=-.||..-..-+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 222222233457899999999999987743 355678889999999988654322 11235655666666
Q ss_pred hcCChHHHHHHHHHhhhC----------Cc---------ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 048830 167 QASFHLEALKLYERMRFE----------DV---------GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~----------~~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 227 (551)
..++.+.|++.|++.... .. ..|...|.-...-+-..|..+.|..+|..+..
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 678888888888764211 10 12333333333444456666777666665543
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh-----
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS----- 302 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----- 302 (551)
|-+++...|-.|+.++|-++-++- .|..+.-.+...|-..|++.+|+..|-+.+. |...|+.|-
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMK 1009 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHH
Confidence 344556666678888877776653 3666667788899999999999999987653 223333222
Q ss_pred ----------ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh------------cCCC--CH
Q 048830 303 ----------HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT------------SSPS--DP 358 (551)
Q Consensus 303 ----------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~------------~~~~--~~ 358 (551)
...+.-.|-++|++. |.. ...-+.+|-++|.+.+|+++--+ -+.. |+
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 222344455555544 211 22345678888888888876311 1222 77
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh------h----------------cCCC---------cchHHHHHHHhhhcCC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQ------L----------------EAAS---------AGDYVLLATIYACTKD 407 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~----------------~p~~---------~~~~~~l~~~~~~~g~ 407 (551)
...+--...+..+.++++|..++-.+.+ + -|.. ......++..+.++|.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 7777777888888888888877655432 1 1211 2256789999999999
Q ss_pred hhHHHHHHH
Q 048830 408 EEGVARTRK 416 (551)
Q Consensus 408 ~~~a~~~~~ 416 (551)
+..|.+-|.
T Consensus 1161 Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1161 YHAATKKFT 1169 (1416)
T ss_pred hHHHHHHHh
Confidence 888877653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.4e-06 Score=81.71 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHhcC
Q 048830 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR--DVLSWNSMIVGYGVHG 270 (551)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g 270 (551)
|..+...|+..|+++.|+++|.+. ..++--|++|.+.|++++|.++-.+...| .+..|-+-..-+-.+|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhc
Confidence 333444444444444444444321 12233344455555555555444444333 2223333333344444
Q ss_pred ChHHHHHHH
Q 048830 271 RGDEAISFF 279 (551)
Q Consensus 271 ~~~~A~~~~ 279 (551)
++.+|.++|
T Consensus 839 kf~eaeqly 847 (1636)
T KOG3616|consen 839 KFAEAEQLY 847 (1636)
T ss_pred chhhhhhee
Confidence 444444444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.7e-07 Score=94.58 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=172.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR--------DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 294 (551)
.....|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+.- -....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 34677888888899999999999999987642 34579999988888898889999999998742 223567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHH
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGSCK 369 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~ 369 (551)
..|..-|.+.+..++|.++++.|.++++ .....|...++.+.+..+-++|..++.++|.. ......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999999877 66778999999999999999999999987765 5666677777888
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
++|+.+.+..+|+..+.-.|.....|..++++-.+.|..+.++.+|++....++.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999999999999999887755
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-06 Score=78.23 Aligned_cols=304 Identities=13% Similarity=0.060 Sum_probs=166.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--CChhHHHH-HHHHHHhc
Q 048830 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNS-IISCYTQA 168 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~ 168 (551)
+.+++..+.+..+++.|.+++..-.+.. +.+..-.+.|..+|....++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3344444445555666666555544432 22444455555666666666666666665543 22222211 23344456
Q ss_pred CChHHHHHHHHHhhhCCcccCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048830 169 SFHLEALKLYERMRFEDVGLDGFTLVCLLSS--CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 246 (551)
+.+..|+++...|... |+...-..-+.+ ..+.+++..+..+.++.-. ..+..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHH
Confidence 6677777776666542 221111111111 1233444455554444322 1233444444455567777777777
Q ss_pred HHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH----HHHHHHhccCCHHHHHHHHHHhH
Q 048830 247 VFSRMRK----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFL----GLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 247 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
-|+...+ ....+||.-+. ..+.|+++.|+++..++++.|++-.+..-. -.+.+ ...|+. ..+....+
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~Sal 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQSAL 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHHHH
Confidence 7776654 34456665443 345677788888888777776542211000 00000 000000 00000000
Q ss_pred HhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+..++.-...+.+.|+++.|.+-+.. ||. |+++...+.-.- ..+++..+.+-++-+++++|-.+
T Consensus 241 --------~eAfNLKaAIeyq~~n~eAA~eaLtD-mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 241 --------VEAFNLKAAIEYQLRNYEAAQEALTD-MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred --------HHHhhhhhhhhhhcccHHHHHHHhhc-CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCCh
Confidence 11223333446688999999999999 776 788877665332 34556667777788888999888
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHH
Q 048830 393 GDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
.++..+.-.|++..-++-|..++-+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 9999999999999888888887643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.4e-05 Score=75.16 Aligned_cols=351 Identities=13% Similarity=0.052 Sum_probs=216.9
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 048830 63 FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142 (551)
Q Consensus 63 ~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 142 (551)
+..-|+-++|....+.-...++ .+.+.|..+.-.+-...++++|...|..+++.+ +.|..++.-|.-.-++-|+++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence 3345777888888877776655 466677777766777788888888888888865 5566677666666667777776
Q ss_pred HHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC-cccCHHHHHHHHH------HHHhcCChHHHHHH
Q 048830 143 ARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFED-VGLDGFTLVCLLS------SCAHVGALNMGIFL 212 (551)
Q Consensus 143 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~------~~~~~~~~~~a~~~ 212 (551)
....-.+..+ .....|...+.++.-.|++..|..+.++..+.. -.|+...|.-... .....|.++.|.+.
T Consensus 128 ~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 128 YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 6555554443 345678888888888899999999888887654 2466555543332 33456777777766
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHH-HHHHHhcCChHHHH-HHHHHHHHcCCC
Q 048830 213 HRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSM-IVGYGVHGRGDEAI-SFFKQMLMAGFH 288 (551)
Q Consensus 213 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~~g~~ 288 (551)
....... +......-.+-.+.+.+.+++++|..++..+.. ||-..|.-. ..++..--+.-+++ .+|....+. .
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y 284 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--Y 284 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--C
Confidence 5544332 122233344556778888999999999998875 444444443 34443333333444 566655543 2
Q ss_pred CCHhhHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHH---H-HHHHHhh-----cCC---
Q 048830 289 PDSITFLGL-LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE---K-ALEVINT-----SSP--- 355 (551)
Q Consensus 289 p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~---~-A~~~~~~-----~~~--- 355 (551)
|....-..+ ++........+..-.++..+.++ |+++- +..+...|-.-...+ + +..+... ++.
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 221111111 11111222233444555555554 65442 222333332211111 1 0111111 111
Q ss_pred -----C-CHHHHHH--HHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 356 -----S-DPVLWRT--LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 356 -----~-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
. .+..|.. +...+-..|+++.|+...+.++..-|.-+..|..-++++...|..++|..++++.++.+.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 1 3444544 557788899999999999999999999899999999999999999999999999887554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-06 Score=77.51 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=109.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3456777777665443322221 11 0122356667777777766542 23367888888899999999
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGSC-KIHRN--VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
+++|...|++++.. +...+..+..++ ...|+ .++|..+++++++.+|+++.++..++..+...|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998886655 888888888864 67676 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 048830 417 LIKSNG 422 (551)
Q Consensus 417 ~m~~~g 422 (551)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-06 Score=78.57 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=124.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----h
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD-V---LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI----T 293 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 293 (551)
....+..++..|.+.|++++|...|+++.+ |+ . .+|..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 455667778888888999999998887754 22 2 46677788888889999999999988875 33322 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCc-cchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHH
Q 048830 294 FLGLLCGCSHQ--------GLVEEGVEYFHMMVSRYNLKPGI-KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTL 364 (551)
Q Consensus 294 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 364 (551)
+..+..++.+. |+.++|.+.|+.+.+. .|+. ..+..+... +..... .. .....+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~---~~-------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNR---LA-------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHH---HH-------HHHHHH
Confidence 44455555544 6778888888888754 3432 122211111 001100 00 112245
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
...+...|+++.|...++++++..|++ +..+..++.+|...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667888999999999999999997765 468899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-08 Score=59.57 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=29.6
Q ss_pred ccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC
Q 048830 14 KARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ 49 (551)
Q Consensus 14 ~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~ 49 (551)
.|+.||.++||+||+.|++. |++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~--G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKA--GRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHC--CCHHHHHHHHHhCc
Confidence 37889999999999999998 99999999998884
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0001 Score=74.49 Aligned_cols=260 Identities=15% Similarity=0.128 Sum_probs=185.4
Q ss_pred HHHHHhCCCHHHHHHHhccCCCCChh--HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHH
Q 048830 131 MRGYAANGVIEAARSVFDNMPERDLV--SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208 (551)
Q Consensus 131 i~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 208 (551)
+.+-.....+.+|+.+++.+..+++. -|..+..-|...|+++.|.++|.+.- .+.-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34455667888888888888876554 37778889999999999999996542 35567788999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (551)
|.++-.+. .|.......|-+-..-.-+.|++.+|+++|-.+..|+. .|..|-++|..+..+++.++-.
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC-----
Confidence 98876554 34555666777777778889999999999999888875 4778999999999998887643
Q ss_pred CCH--hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-C-----HHH
Q 048830 289 PDS--ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-D-----PVL 360 (551)
Q Consensus 289 p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-----~~~ 360 (551)
||. .|-..+..-+-..|++..|...|-+.- -|.+-+++|-..+.+++|.++-+. -.. | ...
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakt-egg~n~~k~v~fl 946 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKT-EGGANAEKHVAFL 946 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhc-cccccHHHHHHHH
Confidence 333 466667777888999999998877663 267788899999999999888764 221 2 222
Q ss_pred HHH------HHHHHHhcCcHHHHHHHH------HHHHh---h--cCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 361 WRT------LLGSCKIHRNVEIGEIAM------KNLVQ---L--EAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 361 ~~~------ll~~~~~~g~~~~a~~~~------~~~~~---~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|.. ....+.++|-++.|.... +-++. + ...-+..+..++..+...|++++|-+-+-+..+.+
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 221 122334445444444321 11111 1 12235677888888999999999999887766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00019 Score=71.15 Aligned_cols=340 Identities=12% Similarity=0.044 Sum_probs=193.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 60 IRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 60 i~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
++-+.++|++++|+....+++..++ -|...+..=+-+..+.+.+++|+.+.+.-.. ...+..-+-.-..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 4566778888888888888887663 3445555556667778888888744332111 01111111122334457888
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG-FTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
.|+|...++....-|..+...-...+-+.|++++|+.+|+.+.+.+..--. ..-..++.+-+.. .+. .+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HHHh
Confidence 999999888655555545555566777889999999999998776543211 1222222211111 010 1122
Q ss_pred hCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC-----Hh-----HHHHHHHHHHhcCChHHHHHH
Q 048830 219 MGFVES--VYVGNALVDMYAKCGNLDSAFCVFSRMR--------KRD-----VL-----SWNSMIVGYGVHGRGDEAISF 278 (551)
Q Consensus 219 ~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~~ 278 (551)
....|+ -..+-.....+...|++.+|+++++... ..| +. .---|.-.+...|+-++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 222221 1222223455678899999999988772 111 11 122344567788999999999
Q ss_pred HHHHHHcCCCCCHhh----HHHHHHHHhccCCH-H-HHHHHHHHhHHhc----------CCCCCccchhhhhHHHhhcCC
Q 048830 279 FKQMLMAGFHPDSIT----FLGLLCGCSHQGLV-E-EGVEYFHMMVSRY----------NLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 279 ~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~-~-~a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~~~g~ 342 (551)
+...+... .+|... -|.|+ +...-.++ + .++..++...... .-.-....-++++.+| .+.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 99988874 445422 22222 22221111 1 1111121111000 0001111223344444 455
Q ss_pred HHHHHHHHhhcCCC--CHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhhcCCC-cchHHHHHHHhhhcCChhHHHHHHH
Q 048830 343 LEKALEVINTSSPS--DPVLWRTLLGSCKI--HRNVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 343 ~~~A~~~~~~~~~~--~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
.+.+.++-.+ +|. -...+..++..+.+ ......+..++....+..|.+ ..+...++......|+|+.|.+++.
T Consensus 323 ~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6778888777 776 34555666654422 224777888888888888886 5566778888999999999999998
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.6e-07 Score=75.24 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC
Q 048830 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP 355 (551)
Q Consensus 277 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 355 (551)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. +.| +...|..+..++.+.|++++|...|++++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 23443 33455666777777777777777653 344 566667777777777777777777777554
Q ss_pred C---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 356 S---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 356 ~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
. ++..|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 77777778888888888888888888888888888777766665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00057 Score=63.36 Aligned_cols=304 Identities=9% Similarity=0.039 Sum_probs=186.0
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHH---HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH-HHHHHHhc
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLI---RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT-FTLKACER 101 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~-~ll~~~~~ 101 (551)
|-+.+.-. |++.+|+.-|....+-|...|-++. ..|..-|+...|+.=|.+.++.. ||-..-. .-...+.+
T Consensus 44 lGk~lla~--~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 44 LGKELLAR--GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHh--hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhchhhhh
Confidence 33444445 8888999988888777777777765 57888899999999999888764 7754321 22345678
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 048830 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 102 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (551)
.|.+++|..=|+.+++.. |+..+ ...++.+.--.++-..+ ...+..+.-.|+...|+.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHH
Confidence 999999999999998864 32211 11222222112221111 12233344455555666555555
Q ss_pred hhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh----
Q 048830 182 RFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL---- 257 (551)
Q Consensus 182 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---- 257 (551)
.+.. +-|...|..-..+|...|.+..|..-+..+.+.. ..++...--+-..+...|+.+.+....++..+-|+.
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 5432 2344444555555555666655555555544433 123334444455555666666666665555432211
Q ss_pred --HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCCHhh---HHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048830 258 --SWNSM---------IVGYGVHGRGDEAISFFKQMLMAGFHPDSIT---FLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323 (551)
Q Consensus 258 --~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (551)
.|-.+ +......++|.++++..+...+.......++ +..+-.++...+.+.+|++...+.+ .+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~ 336 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DI 336 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hc
Confidence 11111 2234567888888888888777532212233 4445566778899999999998886 67
Q ss_pred CCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 324 KPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 324 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
.|+ +.++.--.++|.-...+++|+.-|+.+...
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 775 888888888999889999999999885543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-05 Score=81.75 Aligned_cols=176 Identities=13% Similarity=-0.006 Sum_probs=118.4
Q ss_pred hhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHH
Q 048830 4 KKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHML 80 (551)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 80 (551)
.+|..+.+++... .=...|..|-..|... .+...|.+.|+..- ..+..++......|++..+++.|..+.-..-
T Consensus 477 al~ali~alrld~-~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 477 ALHALIRALRLDV-SLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHhccc-chhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4566665443321 1123677777888877 78888999998654 4577788889999999999999988833222
Q ss_pred HcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHH
Q 048830 81 MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNS 160 (551)
Q Consensus 81 ~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 160 (551)
+......-...|....-.+...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|++...-++..|..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 221100111223333344667788888888888888764 5577889999999999999999999998877643333221
Q ss_pred ---HHHHHHhcCChHHHHHHHHHhhh
Q 048830 161 ---IISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 161 ---li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
....-+..|.+.+|+..+.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22234567889999888877643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=57.59 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=25.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 220 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777888888888888888888888877774
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-05 Score=75.77 Aligned_cols=76 Identities=11% Similarity=0.009 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC----------
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKIH----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK---------- 406 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------- 406 (551)
+++.++..+++.. |...|+.+...+... ++..+|...+.+++..+|.++.+...|+.+|+...
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 3455555443433 888898888888773 34566888888888888999999999999998743
Q ss_pred --------ChhHHHHHHHHHH
Q 048830 407 --------DEEGVARTRKLIK 419 (551)
Q Consensus 407 --------~~~~a~~~~~~m~ 419 (551)
..++|.++++.+.
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hccccccccHHHHHHHHHHHH
Confidence 2367888888774
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.3e-06 Score=87.62 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=105.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchhh
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGC 332 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 332 (551)
++..+-.|.....+.|..++|+.+++...+. .||. .....+...+.+.+.+++|....++... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 4677777888888888888888888888874 6665 4566777788888888888888888764 455 4666777
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
+..++...|++++|.++|++++.. +...|.++..++...|+.++|...|+++++...+....|..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 788888888888888888886633 67888888888888888888888888888876544444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00015 Score=67.31 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=137.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHH
Q 048830 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGN-----ALVDMYAKCGNLDSAFCVFSRMRK-----RDVLSWNSMIVGYG 267 (551)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 267 (551)
--|.+.+++.+|..+...+.- ..|...+.. ++..-......+.-|.+.|+-+-+ ..+..-.+|.+.+.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred eeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 345677788777776654321 112222222 222222222345667777776543 23334556777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CCccchh-hhhHHHhhcCCHHH
Q 048830 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-PGIKHYG-CLVDLYGRAGKLEK 345 (551)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~-~li~~~~~~g~~~~ 345 (551)
-..++++.+-+++....--.. |...-..+.++.+..|.+.+|+++|-.+. +.+ .|..+|. .|..+|.+++.++-
T Consensus 371 L~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 788899999888887765333 33333457889999999999999998774 333 3455555 56688999999999
Q ss_pred HHHHHhhcCCC--CHHHHHHH-HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 346 ALEVINTSSPS--DPVLWRTL-LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 346 A~~~~~~~~~~--~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|.+++-+ +.. +..+.-.+ ..-|.+.+.+--|-++|..+-.++|. |..| .|+-.....+|..+....
T Consensus 447 AW~~~lk-~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW---------eGKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 447 AWDMMLK-TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW---------EGKRGACAGLFRQLANHK 515 (557)
T ss_pred HHHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc---------CCccchHHHHHHHHHcCC
Confidence 9999988 666 44444334 47799999999999999999888887 4333 344455566676665544
Q ss_pred CccCC
Q 048830 423 IKTTP 427 (551)
Q Consensus 423 ~~~~~ 427 (551)
-.|.|
T Consensus 516 ~~~~p 520 (557)
T KOG3785|consen 516 TDPIP 520 (557)
T ss_pred CCCCc
Confidence 44444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-06 Score=74.51 Aligned_cols=106 Identities=7% Similarity=-0.046 Sum_probs=91.9
Q ss_pred HHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc
Q 048830 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 388 (551)
.+++..+ .+.|+. +..+...+...|++++|...|++++.. +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455554 345553 556788899999999999999986655 88999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 389 AASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 389 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
|+++.++..++.++...|+.++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.5e-06 Score=83.15 Aligned_cols=190 Identities=19% Similarity=0.162 Sum_probs=155.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 221 FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 221 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
++|-...-..+...+.+.|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566678889999999999999999974 4788889999999999999999988887 48999999999988
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
.....-+++|+++++....+ .-..+.....+.++++++.+.|+..+.. ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888889999988866432 1112222334478899999988876665 677888888888889999999
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
...|...+.++|++...|+.+..+|.+.|+-.+|...+++..+-+..+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999998887766433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-05 Score=82.25 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=176.3
Q ss_pred HHHHHHHcCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhC-C---CCChhHHHHHHHHHHhCCCHHHHHHHhcc
Q 048830 75 YYNHMLMASLSRPDT-FTFTFTLKACERVKALNKCQELHGFVIRSG-Y---ERCVVVSTNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 75 l~~~m~~~~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
=|++..... ||. ..|..-+......+++++|+++.+++++.= + ..-..+|.++++.-..-|.-+...++|++
T Consensus 1446 Dferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1446 DFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344444443 554 567777888888999999999999988641 1 12245788888888888888888999998
Q ss_pred CCC-CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-Cchh
Q 048830 150 MPE-RD-LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV-ESVY 226 (551)
Q Consensus 150 m~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~ 226 (551)
..+ -| ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.=.. -...
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 876 23 456889999999999999999999999874 3455667888888888888889999999988886322 1355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHH
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGC 301 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~ 301 (551)
...-.+.+-.++|+.+.+..+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.+..-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 666677788899999999999998874 24678999999999999999999999999998887765 4455555544
Q ss_pred hccCCHHH
Q 048830 302 SHQGLVEE 309 (551)
Q Consensus 302 ~~~g~~~~ 309 (551)
.+.|+-+.
T Consensus 1682 k~~Gde~~ 1689 (1710)
T KOG1070|consen 1682 KSHGDEKN 1689 (1710)
T ss_pred HhcCchhh
Confidence 44455433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-05 Score=72.33 Aligned_cols=153 Identities=10% Similarity=0.122 Sum_probs=114.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
+-.|.+.|+++.+....+.+..+. ..|...++.++++..+++..... +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788777655544332221 01223566778888887777653 456677888888899999999999
Q ss_pred HHHHHhHHhcCCCC-CccchhhhhHH-HhhcCC--HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 048830 312 EYFHMMVSRYNLKP-GIKHYGCLVDL-YGRAGK--LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNL 384 (551)
Q Consensus 312 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 384 (551)
..|++..+ +.| +...+..+..+ +...|+ .++|.+++++++.. +...+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998864 455 67777788876 467777 58999999886655 8889999999999999999999999999
Q ss_pred HhhcCCCcchHH
Q 048830 385 VQLEAASAGDYV 396 (551)
Q Consensus 385 ~~~~p~~~~~~~ 396 (551)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987665443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=80.78 Aligned_cols=214 Identities=12% Similarity=0.102 Sum_probs=143.7
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHH
Q 048830 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC 200 (551)
Q Consensus 121 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 200 (551)
+|-...-..+...+...|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444445566777788888888888888775 4577777788888888888877777665 367777777777776
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHH
Q 048830 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAIS 277 (551)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 277 (551)
.+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-....+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 6666667777666654332 1112222223457777777777765432 34567777777777777777777
Q ss_pred HHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 278 FFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 278 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+- + .-+...|...+....+.|.+++|.+.+.+
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 7777665 35554 56777777777777777777777777653 3 33445566666666777777777777766
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=82.64 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=49.3
Q ss_pred HHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 345 KALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 345 ~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.|..-+.+++.. +..+|+.|.-. ..-|++.-|...|-+....+|.+..+|..++-.+.+..+++-|...|.+.+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 455555554444 66666666655 4456666666677677777777777777777777777777777777766654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00021 Score=73.27 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=139.2
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC-------------CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCC
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN-------------PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASL 84 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~-------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 84 (551)
.+..+|..+.+|+.+. .+++-|.-.+..|.+ ++ ..=....-...+-|..++|+.+|++-.+.+
T Consensus 755 kS~~vW~nmA~McVkT--~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D- 830 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKT--RRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD- 830 (1416)
T ss_pred hhhHHHHHHHHHhhhh--ccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 4677899999999999 999999888888753 21 111122223456688899999998877643
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC------------
Q 048830 85 SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE------------ 152 (551)
Q Consensus 85 ~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------ 152 (551)
.|=+.|...|.+++|.++-+.=-+..+ ..+|..-..-+-..++.+.|++.|++...
T Consensus 831 ---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 831 ---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred ---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 244556678999999887554322222 22344444445556778888887765432
Q ss_pred -----------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 048830 153 -----------RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF 221 (551)
Q Consensus 153 -----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 221 (551)
+|...|.-....+-..|+.+.|+.+|...+. |-++.+..|-.|+.++|.++-++ .
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s-- 964 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S-- 964 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c--
Confidence 3555555566666677999999999887653 44566666778888888877654 2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 222 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
-|.....-|..+|-..|++.+|...|-+..
T Consensus 965 -gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 -GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 355666678888888888888888887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.9e-06 Score=80.16 Aligned_cols=244 Identities=13% Similarity=0.025 Sum_probs=179.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLD 242 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 242 (551)
.-+.+.|+..+|.-.|+...+.. +-+...|..|...-+..++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678899999999998887653 3345577778888888888888999888888864 335778888888899999999
Q ss_pred HHHHHHHhcCCCC-HhHHHHHH---------HHHHhcCChHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 243 SAFCVFSRMRKRD-VLSWNSMI---------VGYGVHGRGDEAISFFKQMLM-AGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 243 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
.|.+.|+...... ...|...- ..+..........++|-++.. .+..+|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999988763210 00000000 112222234455666666655 454467777777777788899999999
Q ss_pred HHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Q 048830 312 EYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387 (551)
Q Consensus 312 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 387 (551)
..|+.++ ..+| |...|+-|.-.++...+.++|+.-|++++.. -+.++..|.-.|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999997 4677 6889999999999999999999999997776 6778889999999999999999999999987
Q ss_pred cCCC----------cchHHHHHHHhhhcCChhHH
Q 048830 388 EAAS----------AGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 388 ~p~~----------~~~~~~l~~~~~~~g~~~~a 411 (551)
.+.+ ..+|..|=.++.-.++.|-+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 6441 13555555556656655533
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0018 Score=68.22 Aligned_cols=300 Identities=12% Similarity=0.042 Sum_probs=193.8
Q ss_pred hhhhhhHhhhhccCC--CCccHHHHHHHHHHcCCCCChHHHHHHHhcCC-CCChhh-----HHHHH--------------
Q 048830 3 LKKHARYVGLNKARQ--AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ-NPQTQA-----WNSLI-------------- 60 (551)
Q Consensus 3 ~~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~-~~~~~~-----~~~li-------------- 60 (551)
|++-++++ +.++. .|+.-.+..+.++... +-..+-.++++++. ++++++ -|.||
T Consensus 967 RqLiDqVv--~tal~E~~dPe~vS~tVkAfMta--dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~Y 1042 (1666)
T KOG0985|consen 967 RQLIDQVV--QTALPETQDPEEVSVTVKAFMTA--DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEY 1042 (1666)
T ss_pred HHHHHHHH--HhcCCccCChHHHHHHHHHHHhc--CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHH
Confidence 45556665 56663 4666677788999998 88899999998764 333322 12222
Q ss_pred -------------HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH
Q 048830 61 -------------RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVS 127 (551)
Q Consensus 61 -------------~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 127 (551)
.....++-+++|..+|++.- .+......++.- -++++.|.++-+.. ..+.+|
T Consensus 1043 I~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vW 1107 (1666)
T KOG0985|consen 1043 INRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVW 1107 (1666)
T ss_pred HHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHH
Confidence 22334444566666665432 344444444432 35556665544332 345678
Q ss_pred HHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChH
Q 048830 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALN 207 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 207 (551)
+.+..+-.+.|.+.+|++-|-+. .|+..|...+....+.|.|++-++++...++..-.|... +.++-+|++.+++.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHH
Confidence 88999999999999998887554 456678888999999999999998887777666556544 35777888888877
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------------------------CCCHhHHHHHH
Q 048830 208 MGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR------------------------KRDVLSWNSMI 263 (551)
Q Consensus 208 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li 263 (551)
+-+.+.. .|+..-...+.+-+...|.++.|.-+|..+. ..+..+|-..-
T Consensus 1184 elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1184 ELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred HHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 6665542 3444444444555555555555554444432 13567888887
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA 340 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 340 (551)
.+|...+.+.-| +|-...+.....-.-.|+..|...|-+++-+.+++..+ |+.. ....|+-|.-+|.+-
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc
Confidence 777776655433 34333444556667789999999999999999988664 6554 456677777777654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-05 Score=66.88 Aligned_cols=117 Identities=9% Similarity=0.053 Sum_probs=97.1
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
....-.+...+...|++++|..+|+-.... +...|-.|...|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444555666778899999999999873322 88999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048830 404 CTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 466 (551)
..|+.+.|.+.|+...... ..+|+..++.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999886521 135777777777777666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=74.38 Aligned_cols=181 Identities=12% Similarity=-0.003 Sum_probs=125.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHh---HH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV-E-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVL---SW 259 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~ 259 (551)
.....+......+...|+++.|...++.+.+.... | ....+..+..+|.+.|++++|...|+++.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34557777888899999999999999999886421 1 124677889999999999999999999864 2 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch
Q 048830 260 NSMIVGYGVH--------GRGDEAISFFKQMLMAGFHPDSI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330 (551)
Q Consensus 260 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 330 (551)
..+..++... |+.++|.+.|+++... .|+.. ....+... .. .. ... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHH-H--------HHH
Confidence 5566666654 7899999999999875 45442 22111110 00 00 000 0 011
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 389 (551)
..+...|.+.|++++|...+++++.. ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667788889999998888775432 356788888999999999999988877766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-05 Score=69.17 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=60.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCc
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~ 373 (551)
.+....+.|++..|...+.+... .-++|...|+.+.-+|.+.|++++|..-|.++++. ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444555555555555555532 22334555555555555555555555555443333 55555555555555555
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHH
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 414 (551)
.+.|+.++.......+.+..+-..|..+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555555555555555555555555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=7e-05 Score=80.12 Aligned_cols=169 Identities=7% Similarity=0.030 Sum_probs=101.2
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHh
Q 048830 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQ 167 (551)
Q Consensus 88 d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 167 (551)
+...+..|+..+...+++++|.++.+...+.. +.....|-.+...|.+.++.+.+.-+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 44566677777777777777777777555532 22233333344456666664444333 23333334
Q ss_pred cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048830 168 ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCV 247 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 247 (551)
..++.-+..+...|... .-+...+-.+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 44443333344444432 2233456667777777777777777777777766 44677777777777777 77777777
Q ss_pred HHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 248 FSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 248 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
+.+. +..|...+++.++.++|.++...
T Consensus 172 ~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 172 LKKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 6653 23355666777777777777764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00014 Score=71.37 Aligned_cols=343 Identities=14% Similarity=0.064 Sum_probs=201.9
Q ss_pred HHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCC
Q 048830 61 RAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC-VVVSTNLMRGYAANGV 139 (551)
Q Consensus 61 ~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~ 139 (551)
.+....|+++.|+.+|-+.....+ +|...|+.=..+++..|++++|.+=-.+.++. .|+ +.-|+-+..+..-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 355678999999999999988876 78899999999999999999998776666654 454 4568888888888999
Q ss_pred HHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH----hhhCCc-----ccCHHHHHHHHHHHHhc----
Q 048830 140 IEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYER----MRFEDV-----GLDGFTLVCLLSSCAHV---- 203 (551)
Q Consensus 140 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~-----~p~~~t~~~ll~~~~~~---- 203 (551)
+++|+..|.+-.+ .|...++-+..++... . ++.+.|.. +...+. ......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999987665 3445566666665111 0 01111110 000000 00112233333222110
Q ss_pred ---CChHHHHHHHHHHHH--------hC-------CCC------------c----------hhHHHHHHHHHHhcCCHHH
Q 048830 204 ---GALNMGIFLHRIACE--------MG-------FVE------------S----------VYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 204 ---~~~~~a~~~~~~~~~--------~g-------~~~------------~----------~~~~~~li~~y~~~g~~~~ 243 (551)
.+.+...+.+..+.. .+ ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 001111111111100 00 011 0 0112345555566666677
Q ss_pred HHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----HhhHHHHHHHHhccCCHHHHHHHHH
Q 048830 244 AFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP--D----SITFLGLLCGCSHQGLVEEGVEYFH 315 (551)
Q Consensus 244 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~~~~~~g~~~~a~~~~~ 315 (551)
|.+.+....+ .++.-++....+|...|.+.+....-.+..+.|..- | ...+..+..++.+.++++.|..+|+
T Consensus 243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 7666665543 333445555566777776666666555555544211 1 1122234445666677777777777
Q ss_pred HhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHH---HHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 316 MMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVL---WRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 316 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+.+..+ -.|+ .+.+....+++....+. ... ++.. -..-...+.+.|++..|...|.+++..+|+|
T Consensus 323 kaLte~-Rt~~---------~ls~lk~~Ek~~k~~e~-~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 323 KALTEH-RTPD---------LLSKLKEAEKALKEAER-KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHhhhh-cCHH---------HHHHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 765542 2222 22333344444444433 221 2111 1222566788999999999999999999999
Q ss_pred cchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 392 AGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+..|...+-+|.+.|.+..|.+--+...+.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999998865555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00041 Score=62.18 Aligned_cols=174 Identities=14% Similarity=0.071 Sum_probs=105.4
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
+.+.+.......+......-...|...|++++|.+.......-+....+ ...+.+..+.+-|...+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3344444333333333333445677888888888887774333333333 34455667778888888888763 255
Q ss_pred hhHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHH
Q 048830 292 ITFLGLLCGCSH----QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTL 364 (551)
Q Consensus 292 ~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 364 (551)
.|.+-|..++.+ .+.+..|.-+|++|.. ...|+..+.+...-+....|++++|..+++.++.. ++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 677766666543 4567788888888854 35667666777777777777777777777765655 55555555
Q ss_pred HHHHHh-cCcHHHHHHHHHHHHhhcCCCc
Q 048830 365 LGSCKI-HRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 365 l~~~~~-~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+..-.. ..+.+.-.+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 543333 3344455566666666666543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0002 Score=69.62 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=93.4
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
.+...|.++.|+..++.+.+. .+-|+.......+.+.+.++.++|.+.+++++.. ....+-++..++.+.|+.++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 345578888888888888653 3335666677788888888998888888886655 56777788888888888888
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
|+..++.....+|++|..|..|+.+|...|+..++...+.++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888888888888888888777777766554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.6e-06 Score=69.36 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=78.2
Q ss_pred CCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 323 LKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 323 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
..| +......+...+...|++++|.+.++.+... +...|..+...+...|+++.|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 344 3444556667777778888888777764332 777888888888888889999999998888889888899999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988877664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00091 Score=64.36 Aligned_cols=223 Identities=9% Similarity=0.038 Sum_probs=111.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 238 (551)
+-..+...++.++|+.+..++++. .|+.. .+..--.++...+ .++++...++.+.+... .+..+|+....++.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 333444455556666666555542 33332 2222223333344 34556666665555432 2333454444344444
Q ss_pred CCH--HHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc---CC----
Q 048830 239 GNL--DSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ---GL---- 306 (551)
Q Consensus 239 g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~---- 306 (551)
|+. +++..+++++.+ +|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 442 445555555543 45566666666666666777777777777665422 334444433333332 11
Q ss_pred HHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc----CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC------
Q 048830 307 VEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA----GKLEKALEVINTSSPS---DPVLWRTLLGSCKIHR------ 372 (551)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g------ 372 (551)
.+....+...++. ..| +...|+-+..+|... ++..+|.+++.+.+.. +......|+..|....
T Consensus 199 ~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 199 RDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhh
Confidence 2344555544443 234 456666666666552 3345566666553332 4555555666655421
Q ss_pred ------------cHHHHHHHHHHHHhhcCC
Q 048830 373 ------------NVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 373 ------------~~~~a~~~~~~~~~~~p~ 390 (551)
..++|..+++.+-+.+|-
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235666666666544554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00012 Score=77.58 Aligned_cols=132 Identities=12% Similarity=0.101 Sum_probs=112.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-hhHH
Q 048830 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-ITFL 295 (551)
Q Consensus 220 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 295 (551)
....+...+-.|.......|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+. ....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3556788899999999999999999999999874 4 5667888899999999999999999999985 5665 5556
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
.+..++.+.|++++|..+|+++... .| +...+..+..++-..|+.++|...|++++..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777889999999999999999762 34 4778899999999999999999999996655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.001 Score=71.50 Aligned_cols=276 Identities=12% Similarity=0.031 Sum_probs=161.7
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhh-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH
Q 048830 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFT-FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVST 128 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 128 (551)
+.+...|..|+..|...+++++|.++.+...+.. |+... |-.+...+.+.++...+..+ .+... .+...-|+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~ 100 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWA 100 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchh
Confidence 3466778888888888888888888888776665 44332 22222245555555555444 22221 11111122
Q ss_pred HHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHH
Q 048830 129 NLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNM 208 (551)
Q Consensus 129 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 208 (551)
.+-..|.+-|++. .+..++-.+..+|-+.|+.++|..+|+++.+.. +-|....+.+...++.. ++++
T Consensus 101 ~ve~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 101 IVEHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred HHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2222222222211 123366678888888888888888888888776 45666777788888877 8888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GF 287 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 287 (551)
|.+++..+++. |...+++..+.+++.++..-++.-. +.-..+.+.+... |.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~-------------d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDF-------------DFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccc-------------hHHHHHHHHHHhhhcc
Confidence 88888777664 5666788888888887765443322 2222333333322 22
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhh----cCCHHHHHHHHhhcCCCCHHHHH
Q 048830 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGR----AGKLEKALEVINTSSPSDPVLWR 362 (551)
Q Consensus 288 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 362 (551)
.--..++..+-..|....+++++..+++.+++ ..| |.....-++..|.. ...+++.+++
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~------------- 283 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYKEKYKDHSLLEDYLKM------------- 283 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHHHHccCcchHHHHHHH-------------
Confidence 22334555566677778888888888888864 444 44445555555541 1222222222
Q ss_pred HHHHHHHhc-CcHHHHHHHHHHHHhhcCCCc
Q 048830 363 TLLGSCKIH-RNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 363 ~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+..... .++..+..-|++.+..++.+-
T Consensus 284 ---s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 284 ---SDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred ---hccccCCccHHHHHHHHHHHeeecCCCE
Confidence 112222 456777777777777766653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.008 Score=59.43 Aligned_cols=393 Identities=12% Similarity=0.075 Sum_probs=227.9
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--P-QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~ 93 (551)
+.|+.+|+.||.-+.. ..+++++..++++.. | ....|..-|..-....+++....+|.+.+..- .+...|.
T Consensus 17 P~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHH
Confidence 4588899999998765 589999999998863 3 56789999999999999999999999988654 4555555
Q ss_pred HHHHHHhc-cCChHHH----HHHHHHH-HHhCCCCCh-hHHHHHHHH---------HHhCCCHHHHHHHhccCCC-C---
Q 048830 94 FTLKACER-VKALNKC----QELHGFV-IRSGYERCV-VVSTNLMRG---------YAANGVIEAARSVFDNMPE-R--- 153 (551)
Q Consensus 94 ~ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~~-~~~~~li~~---------y~~~g~~~~A~~~~~~m~~-~--- 153 (551)
.-|+---+ .++...+ .+.|+.. .+.|+.+-. ..|+..++. |....+++..+++++++.. |
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 55543222 2333332 2333333 345544432 345555443 3444567778888887754 1
Q ss_pred ------ChhHHHHHHHHH-------HhcCChHHHHHHHHHhhh--CCcccCHHH---------------HHHHH------
Q 048830 154 ------DLVSWNSIISCY-------TQASFHLEALKLYERMRF--EDVGLDGFT---------------LVCLL------ 197 (551)
Q Consensus 154 ------~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~~t---------------~~~ll------ 197 (551)
|-..|..=|+.. -+...+..|.+++++... .|+.-...+ +..+|
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 222221111111 112233444444444321 111100000 10011
Q ss_pred -------------------------------------------HHHHhcCC-------hHHHHHHHHHHHHhCCCCchhH
Q 048830 198 -------------------------------------------SSCAHVGA-------LNMGIFLHRIACEMGFVESVYV 227 (551)
Q Consensus 198 -------------------------------------------~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~ 227 (551)
..+...|+ -+++..+++..+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111122 1223333333332211222222
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHH
Q 048830 228 GNALVDMYAKC---GNLDSAFCVFSRMRK----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP-DSITFLGLLC 299 (551)
Q Consensus 228 ~~~li~~y~~~---g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 299 (551)
|.++.+.--.. ...+.....+++... .-..+|-.+|..-.+..-...|..+|.+..+.+..+ +....++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 22222111000 112333333333321 123456677777777888889999999999988777 5567777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCc
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~ 373 (551)
.+| +++.+.|.++|+.-.+++|-.| .--...++-+...++-..|..+|++.++. ...+|..++..-..-|+
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 666 5788999999998887765444 23356777788889989999999986655 45889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC----cchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 374 VEIGEIAMKNLVQLEAAS----AGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
...+..+-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 488 L~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999988888766522 123334556666666654444433333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6e-05 Score=67.44 Aligned_cols=156 Identities=12% Similarity=-0.061 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 048830 57 NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136 (551)
Q Consensus 57 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 136 (551)
..+-..+...|+-+.+..+......... -|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 4444555566666666666555443322 244444456666666677777766666665543 5666666666666777
Q ss_pred CCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHH
Q 048830 137 NGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLH 213 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 213 (551)
.|+++.|..-|.+..+ .+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+.-+....|++++|+.+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777766666665543 345556666666666677777776666665543 224444445555566666666666665
Q ss_pred HHH
Q 048830 214 RIA 216 (551)
Q Consensus 214 ~~~ 216 (551)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-06 Score=51.55 Aligned_cols=35 Identities=40% Similarity=0.736 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=76.02 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=93.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH 371 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~ 371 (551)
.+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+++.. +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555566667777777777777543 244 3445666666677777777777765543 666677777889999
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
++++.|+.+.+++.+..|.+-.+|..|+.+|...|++++|...++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.018 Score=60.53 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCcHH---HHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccC
Q 048830 360 LWRTLLGSCKIHRNVE---IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 426 (551)
+-+.|+..|++.++.. +|+-+++..+...|.|+..-..|+.+|+-.|-+..|.+.++.+.-+.|..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 4567778888887754 677777888888899999999999999999999999999998876666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00066 Score=66.18 Aligned_cols=143 Identities=20% Similarity=0.153 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL-LCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVD 335 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 335 (551)
.+--....+...|+.++|+..++.+... .||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3333444566789999999999998875 6776666554 4578899999999999999974 5675 556667889
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
+|.+.|++.+|..+++..... |+..|..|..+|...|+..++... .+..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 999999999999999874433 999999999999999998877654 455778899999999
Q ss_pred HHHHHHHhCC
Q 048830 413 RTRKLIKSNG 422 (551)
Q Consensus 413 ~~~~~m~~~g 422 (551)
......+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9998887653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.2e-06 Score=51.28 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCH
Q 048830 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDG 190 (551)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 190 (551)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.3e-05 Score=62.94 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=84.6
Q ss_pred HHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 278 FFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 278 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
++++.... .|+. .....+...+...|++++|...|+.+... .+.+...+..+...|.+.|++++|...+++++..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444442 4433 44556667777888888888888887653 2336677788888888888888888888875444
Q ss_pred ---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 357 ---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 357 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
+...+..+...+...|+.+.|...++++++++|+++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7788888888999999999999999999999998765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00011 Score=71.95 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 048830 57 NSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136 (551)
Q Consensus 57 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 136 (551)
.+|+..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+.++. .+.+......-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 455666777788888888888887764 44 3344667777777778888888887765 34566666667777888
Q ss_pred CCCHHHHHHHhccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 137 NGVIEAARSVFDNMPE--RD-LVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 137 ~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
.++.+.|.++.+++.+ |+ -.+|..|..+|.+.|+++.|+..+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888765 43 4578888888888888888888887764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.7e-06 Score=49.27 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhCCccc
Q 048830 156 VSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188 (551)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 188 (551)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=48.68 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP 289 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 289 (551)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=61.55 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--ccchhh
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD---SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--IKHYGC 332 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 332 (551)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344444444 2555555555555555532 111 122222334455555555555555555443 21111 112223
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKN 383 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~ 383 (551)
|...+...|++++|+..++. .+. .+..+..+...+...|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444445555555555444 222 333333333444444444444444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.9e-05 Score=58.03 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=73.7
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
+..+...+...|++++|..++++++.. +...+..+...+...++++.|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888774443 55677778888888899999999999999988888888889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 048830 407 DEEGVARTRKLIKS 420 (551)
Q Consensus 407 ~~~~a~~~~~~m~~ 420 (551)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.028 Score=55.80 Aligned_cols=369 Identities=9% Similarity=0.073 Sum_probs=216.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 130 (551)
-|+.+|+.||+-+..+ ..+++.+.++++...-+ -....|..-+..-...++++..+.+|.+.+..-+ +...|..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 4899999999977666 89999999999986543 3456778888888899999999999999887644 45555544
Q ss_pred HHHHH-hCCCHHHH----HHHhcc------CCCCChhHHHHHHHH---------HHhcCChHHHHHHHHHhhhCCccc--
Q 048830 131 MRGYA-ANGVIEAA----RSVFDN------MPERDLVSWNSIISC---------YTQASFHLEALKLYERMRFEDVGL-- 188 (551)
Q Consensus 131 i~~y~-~~g~~~~A----~~~~~~------m~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~~p-- 188 (551)
++--- ..|+...+ .+.|+- |.-..-..|+.-+.- |..+.+.+...++|+++....+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 43221 22333322 122221 112334456665543 345556677788888886532211
Q ss_pred ----CHHHHHHHHHHHH-------hcCChHHHHHHHHHHHH--hCCCCchh---------------HHHHHHHHHHhcCC
Q 048830 189 ----DGFTLVCLLSSCA-------HVGALNMGIFLHRIACE--MGFVESVY---------------VGNALVDMYAKCGN 240 (551)
Q Consensus 189 ----~~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~g~~~~~~---------------~~~~li~~y~~~g~ 240 (551)
|-.+|-.-++... ....+..|.++++++.. .|+.-+.. .|-.+|.-=-..+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222322222221 22334556666666544 23221111 12222221110000
Q ss_pred ------HH--HHHHHHHhcCC---CCHhHHHH-------HHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHhhHH
Q 048830 241 ------LD--SAFCVFSRMRK---RDVLSWNS-------MIVGYGVHGR-------GDEAISFFKQMLMAGFHPDSITFL 295 (551)
Q Consensus 241 ------~~--~A~~~~~~~~~---~~~~~~~~-------li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~ 295 (551)
.- ...=+++.... -.+..|-- .-..+...|+ -+++..+++.....-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000000 00111110 0112233333 455666666655532233444444
Q ss_pred HHHHHHh---ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHH
Q 048830 296 GLLCGCS---HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLWRTLLGS 367 (551)
Q Consensus 296 ~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~ 367 (551)
.+...-- .....+....+++++.....++|+. +|-.+++.-.|..-+..|+.+|.++-+. ++.+.++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4333211 1113566677778777766666765 6778888888999999999999883332 77788888887
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTT 426 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 426 (551)
++ .+|.+.|.++|+--++.-+++|..-...+.-+...|+-..++.+|++....++.++
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 76 56889999999999999999888777888889999999999999999987755543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.3e-05 Score=55.96 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC-ChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK-DEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 420 (551)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999999988764
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0011 Score=66.54 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHcCCChhHHHHH---------HHHHHHcCCCCCChhhHHHHHHHHhccCChHHHH--HHHHHHHHhCCCC
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFY---------YNHMLMASLSRPDTFTFTFTLKACERVKALNKCQ--ELHGFVIRSGYER 122 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l---------~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~g~~~ 122 (551)
+.+.+-+-.|...|.+++|..+ ++.+-... .+...++..=++|.+..+..--+ .-++++.+.|-.|
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A---LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA---LEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHHH---HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3344445556666777666543 11111111 23334444555666655544322 2345566777667
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
+... +...++-.|.+.+|-++|.+ +|.-..|+++|.+|+
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence 7654 45667778889998888755 455555666665553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=58.38 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNS---MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
|.-+.-+...+|+.+.|..+++.+..+-+.++.. -..-+-..|++++|+++++.+.+.. +.|.+++-.=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3344444555666666666666654321111111 1122445677888888888877764 44556665555555556
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhc---CcHHHHH
Q 048830 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGSCKIH---RNVEIGE 378 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~---g~~~~a~ 378 (551)
|+.-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--+++.+ |.++..+..+...+.-. .+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 666677777776665 345577778888888888888888877777633 22666666666554332 3677788
Q ss_pred HHHHHHHhhcCCCcc
Q 048830 379 IAMKNLVQLEAASAG 393 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~ 393 (551)
..|.+++++.|.+..
T Consensus 212 kyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 212 KYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHhChHhHH
Confidence 888888888875443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0053 Score=55.29 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHhcCCC-CHhHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH
Q 048830 235 YAKCGNLDSAFCVFSRMRKR-DVLSWNSMIVGYG----VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 309 (551)
+.+..+.+-|.+.+++|.+- +-.+.+.|..++. -.+...+|.-+|++|-++ ..|+..+.+....++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 33444445555555555442 2223332332222 223455555555555543 35555555555555555555555
Q ss_pred HHHHHHHhHH
Q 048830 310 GVEYFHMMVS 319 (551)
Q Consensus 310 a~~~~~~~~~ 319 (551)
|..+++..+.
T Consensus 226 Ae~lL~eaL~ 235 (299)
T KOG3081|consen 226 AESLLEEALD 235 (299)
T ss_pred HHHHHHHHHh
Confidence 5555555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00096 Score=56.48 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=77.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHH
Q 048830 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF---TFTFTLKACERVKALNKCQELHGFVIRSGYERC--VVVSTN 129 (551)
Q Consensus 55 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ 129 (551)
.|..++..+ ..++...+...++.+...... +.. ....+...+...|++++|...|+.+......|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS--SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 345555555 367777777777777776532 212 233344566777888888888888877652222 123444
Q ss_pred HHHHHHhCCCHHHHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 130 LMRGYAANGVIEAARSVFDNMPER--DLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
|..++...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777778888888887765442 234455666777777888777777764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.7e-05 Score=72.67 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=77.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCc
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~ 373 (551)
...+...|+++.|...|+++++ ..| +...|..+..+|.+.|++++|+..+++++.. +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4556667888888888888874 344 5667777788888888888888888875554 67778888888888888
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
+++|+..|+++++++|+++.....+..+..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888888777666554433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=57.81 Aligned_cols=90 Identities=14% Similarity=0.027 Sum_probs=46.5
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHh
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIY 402 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 402 (551)
.++..+.+.|++++|.+.|++++.. ....+..+..++...|+++.|...++.++...|++ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444444445555555444442221 12334445555555566666666666666555543 33455566666
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 048830 403 ACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~ 421 (551)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 6666666666666655543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0015 Score=58.18 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=136.7
Q ss_pred cCCHHHHHHHHHhcCC--------CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhccCCH
Q 048830 238 CGNLDSAFCVFSRMRK--------RDV-LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGL-LCGCSHQGLV 307 (551)
Q Consensus 238 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~ 307 (551)
..+.++..+++.++.. ++. ..|..++-+....|+.+-|...++++...- |...-...| ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 3578888888888753 232 234455667778899999999999988863 554322222 2224457899
Q ss_pred HHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 048830 308 EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS---SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNL 384 (551)
Q Consensus 308 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 384 (551)
++|.++++.++++ -+.|..++.-=+-+.-..|+--+|++-+..- .+.|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999864 2336777776666677778777777655442 4449999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHhhhcCC---hhHHHHHHHHHHhCCC
Q 048830 385 VQLEAASAGDYVLLATIYACTKD---EEGVARTRKLIKSNGI 423 (551)
Q Consensus 385 ~~~~p~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~ 423 (551)
+-..|.+|..+..++..+.-.|. .+-|++++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999888775 5667778877766443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00084 Score=63.71 Aligned_cols=133 Identities=10% Similarity=0.068 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG-CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2233444433333 33357788899999999886 4446677889999
Q ss_pred HHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 336 LYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
.+.+.|+.+.|..+|++++.. ...+|...+..-.+.|+.+....+.+++.+.-|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999998876 345999999999999999999999999999888744
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00036 Score=56.66 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHH
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGS 367 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~ 367 (551)
..+...+...|++++|...|+.+.+.+.-.| ....+..+..++.+.|++++|.+.+++++.. ...++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444455555555555555543311111 1223344555555555555555555543221 23456666677
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
+...|+.+.|...++++++..|+++....
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 77778888888888888888887765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.8e-05 Score=45.39 Aligned_cols=31 Identities=35% Similarity=0.641 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGF 287 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 287 (551)
++||+++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777788888888888888887777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=8e-05 Score=53.15 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=50.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...+...|++++|+..++++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999888653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0003 Score=64.74 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=89.7
Q ss_pred CC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 324 KP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH---RNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 324 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
.| |.+.|..|...|.+.|+++.|..-|.++... ++..+..+..++... ....++..+++++++++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 7899999999999999999999999887665 888888888776443 3577899999999999999999999
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 397 LLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
.|+-.+...|++.+|...|+.|.+.....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998865443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.3e-05 Score=45.19 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 83 (551)
++||++|++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 467777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=67.14 Aligned_cols=108 Identities=14% Similarity=0.085 Sum_probs=85.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNV 374 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~ 374 (551)
.-..+.+++.+|...|..++ .+.| |..-|..=..+|.+.|.++.|.+-.+.++.. ....|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 34677889999999999987 4677 6677777888999999999999988887777 455677788999999999
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChh
Q 048830 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 409 (551)
++|++.|+++++++|++......|-.+-.+.+...
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998866555555444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00073 Score=59.15 Aligned_cols=130 Identities=14% Similarity=0.207 Sum_probs=88.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchh
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD--SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYG 331 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 331 (551)
....+..+...+...|++++|...|++.......|. ...+..+...+.+.|++++|...+++..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445677777788888888888888888876543332 35677777888888888888888888764 334 455566
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
.+..+|...|+...+..-++.+ ...+++|...++++++.+|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777666555444331 123567888888888888875 5555555555554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00025 Score=64.88 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=72.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCC
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 342 (551)
.-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+..+ .+.| ....|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 34667788888888888888752 3345666677778888888888888777665 4566 36788888888888888
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHH
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGS 367 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~ 367 (551)
+++|.+.|++++.. +...+..|-.+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 88888888887766 55444444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.001 Score=63.28 Aligned_cols=155 Identities=10% Similarity=-0.025 Sum_probs=102.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccc-------------h
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH-------------Y 330 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~ 330 (551)
.++...|++++|...--...+.. ..+......-..++--.++.+.|...|++.+ .+.|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 35666777777776655555432 1111111111123334567777777777665 34454221 1
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
..=.+-..+.|++.+|.+.|.+++.. +...|........+.|+.++|+.-.+.+++++|.-..+|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11223445788888898888887765 45556667777788899999999999999988888888888888888
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 048830 404 CTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~g 422 (551)
..++|++|.+-++...+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 8899999988887765543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=61.35 Aligned_cols=92 Identities=9% Similarity=-0.156 Sum_probs=73.2
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
...|..++..+...|++++|...|++++.. ...+|..+...+...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777788888888888876433 23578888899999999999999999999999998888888888
Q ss_pred Hhh-------hcCChhHHHHHHHHH
Q 048830 401 IYA-------CTKDEEGVARTRKLI 418 (551)
Q Consensus 401 ~~~-------~~g~~~~a~~~~~~m 418 (551)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888777666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00054 Score=67.43 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=75.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA 340 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 340 (551)
....+...|++++|+..|+++++.. +-+...|..+..+|...|++++|...++.++. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999863 33557788888899999999999999999975 455 577888899999999
Q ss_pred CCHHHHHHHHhhcCCC
Q 048830 341 GKLEKALEVINTSSPS 356 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~ 356 (551)
|++++|...|++++..
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999986655
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.8e-05 Score=56.75 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHH
Q 048830 340 AGKLEKALEVINTSSPS-----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 414 (551)
.|+++.|+.++++.+.. +...|..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555666555552222 233445566777777777777777777 666666666666778888888888888887
Q ss_pred HHH
Q 048830 415 RKL 417 (551)
Q Consensus 415 ~~~ 417 (551)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=51.84 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=49.3
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
+...+.+.|++++|.+.|++++.. +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888875554 788888999999999999999999999999999875
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00072 Score=56.74 Aligned_cols=86 Identities=9% Similarity=0.062 Sum_probs=75.9
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChh
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 409 (551)
..-+...|++++|..+|.- +-. +...|..|...|...++++.|...|..+..++++||.++...+.+|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~-L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRF-LCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHH-HHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3344578889999888876 322 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048830 410 GVARTRKLIKS 420 (551)
Q Consensus 410 ~a~~~~~~m~~ 420 (551)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0028 Score=55.22 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchhh
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD--SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGC 332 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 332 (551)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++..... .| ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 34566667777777888888888887776432221 246777777788888888888888777642 33 2344445
Q ss_pred hhHHHh-------hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 333 LVDLYG-------RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 333 li~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+...|. ..|++++|...+++ |...+++.++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~------------------------a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQ------------------------AAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHH------------------------HHHHHHHHHHhCccc
Confidence 555555 45555555544444 677788888888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0005 Score=65.23 Aligned_cols=128 Identities=9% Similarity=0.036 Sum_probs=95.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMM---VSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DP 358 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~ 358 (551)
..|..|.+.|.-.|+++.|+...+.= .+.+|-.. ....+..|.+++.-.|+++.|.+.|+..+.. ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777788899988776642 23344443 3466778899999999999999988762221 56
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhc------CCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLE------AASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
.+..+|..+|....+++.|+..+.+-+.+- .....++..|+++|...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 677788899988899999998888766532 2246688999999999999999988776543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0088 Score=56.97 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCH
Q 048830 227 VGNALVDMYAKC-GNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-----PDS 291 (551)
Q Consensus 227 ~~~~li~~y~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~ 291 (551)
++..+...|-+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-.. ++.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455566666 777777777766542 11 234455667778888888888888877664322 122
Q ss_pred h-hHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCC--ccchhhhhHHHhh--cCCHHHHHHHHhhcCCC-CHHHHHHH
Q 048830 292 I-TFLGLLCGCSHQGLVEEGVEYFHMMVSRY-NLKPG--IKHYGCLVDLYGR--AGKLEKALEVINTSSPS-DPVLWRTL 364 (551)
Q Consensus 292 ~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~l 364 (551)
. .|...+-++...|++..|.+.++...... ++..+ ......|++++-. ...+++|..-|++ +.. |..--..|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~-~~~ld~w~~~~l 274 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS-ISRLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT-SS---HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc-cCccHHHHHHHH
Confidence 1 22333335555678888888887765321 11111 2334455555533 4456777777777 544 54443333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00058 Score=59.77 Aligned_cols=80 Identities=11% Similarity=-0.026 Sum_probs=58.0
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 401 (551)
..+..+...|...|++++|...|++++.. ....|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666666666666654422 135677777888888888888888888888888888888888888
Q ss_pred hhhcCC
Q 048830 402 YACTKD 407 (551)
Q Consensus 402 ~~~~g~ 407 (551)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 887776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.003 Score=65.00 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
++..|.++.......|++++|...++++++++| +...|..++.++...|+.++|...+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 556666666555666777777777777777777 36677777777777777777777777765543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00058 Score=52.28 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHh
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 338 (551)
|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+. .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4455556666666666666666665542 222244555555556666666666666655432 1112234444444555
Q ss_pred hcCCHHHHHHHHhh
Q 048830 339 RAGKLEKALEVINT 352 (551)
Q Consensus 339 ~~g~~~~A~~~~~~ 352 (551)
..|++++|...+.+
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 55555555544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.11 Score=50.68 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=102.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch-hhh
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY-GCL 333 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 333 (551)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-... -||...| ...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456777777777888889999999999888 6677888888887666 47888899999876654 2444333 345
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---C--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---D--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
+.-+.+.++-+.|..+|+.+++. + ..+|..++..-..-|+...+..+-+++.++-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 56677888999999999976666 3 6788899988888999998888888888888774
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.12 Score=50.41 Aligned_cols=373 Identities=10% Similarity=0.033 Sum_probs=189.0
Q ss_pred HcCCCCChHHHHHHHhcCCCC---C------hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH--H
Q 048830 31 AISVSSSLSYAQLLFNQIQNP---Q------TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA--C 99 (551)
Q Consensus 31 ~~~~~g~~~~A~~lf~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~--~ 99 (551)
.+. +++.+|.++|.++-.. + .+.-+.+|++|..+ +.+.....+....+.. | ...|..+..+ +
T Consensus 17 qkq--~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 17 QKQ--KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF---G-KSAYLPLFKALVA 89 (549)
T ss_pred HHH--hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc---C-CchHHHHHHHHHH
Confidence 455 8899999999876521 2 22345677777655 3444444444444432 3 3455555555 3
Q ss_pred hccCChHHHHHHHHHHHHh--CCC------------CChhHHHHHHHHHHhCCCHHHHHHHhccCCC--------CChhH
Q 048830 100 ERVKALNKCQELHGFVIRS--GYE------------RCVVVSTNLMRGYAANGVIEAARSVFDNMPE--------RDLVS 157 (551)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~~ 157 (551)
-+.+.+.+|.+.+..-... +.. +|...-+..+..+...|++.+++.++++|.+ -++.+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4678888888887766543 221 2223335667778889999999988888753 47777
Q ss_pred HHHHHHHHHhc--------CC-------hHHHHHHHHHhhhC------CcccCHHHHHHHHHHHHhcC--ChHHHHHHHH
Q 048830 158 WNSIISCYTQA--------SF-------HLEALKLYERMRFE------DVGLDGFTLVCLLSSCAHVG--ALNMGIFLHR 214 (551)
Q Consensus 158 ~~~li~~~~~~--------g~-------~~~A~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~ 214 (551)
||.++-.+.++ .. ++.++-+..+|... .+-|....+..++....-.. +..--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 87754443322 11 22222223333221 22344444444443332111 1111112222
Q ss_pred HHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH--
Q 048830 215 IACEMGFVES-VYVGNALVDMYAKCGNLDSAFCVFSRM--------RKRDVLSWNSMIVGYGVHGRGDEAISFFKQML-- 283 (551)
Q Consensus 215 ~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 283 (551)
.-...-+.|+ .-+...|+.-+.+ +.+++..+-+.+ .+.=+.++..++....+.++..+|-+.+.-+.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 2222222232 1122233333322 222221111111 11222344444444444444444444443332
Q ss_pred ------------------------------------------HcCCCCCHh-hHHHHH---HHHhccCC-HHHHHHHHHH
Q 048830 284 ------------------------------------------MAGFHPDSI-TFLGLL---CGCSHQGL-VEEGVEYFHM 316 (551)
Q Consensus 284 ------------------------------------------~~g~~p~~~-t~~~ll---~~~~~~g~-~~~a~~~~~~ 316 (551)
...+ |.. -...|+ .-+.+.|. -++|.++++.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 2211 110 001111 12233343 6677777776
Q ss_pred hHHhcCCCC-Cccchhhhh----HHHhhc---CCHH---HHHHHHhh-cCCC----CHHHHHHHHHH--HHhcCcHHHHH
Q 048830 317 MVSRYNLKP-GIKHYGCLV----DLYGRA---GKLE---KALEVINT-SSPS----DPVLWRTLLGS--CKIHRNVEIGE 378 (551)
Q Consensus 317 ~~~~~~~~p-~~~~~~~li----~~~~~~---g~~~---~A~~~~~~-~~~~----~~~~~~~ll~~--~~~~g~~~~a~ 378 (551)
+.+ +.| |..+-+.+. ..|..+ ..+. +-..++++ +++. +...-|.|..| +..+|++.++.
T Consensus 406 il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 406 ILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 653 333 332222211 112111 1111 11122222 2232 56666777755 67899999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
..-.-+.+..| ++.+|..++-+.....++++|..++..+
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999999 7999999999999999999999999764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0002 Score=51.53 Aligned_cols=53 Identities=9% Similarity=0.050 Sum_probs=46.5
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
...|++++|...++++++.+|+++.....++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999877653
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0074 Score=57.50 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CH-HHHHHHHHHHHh
Q 048830 305 GLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DP-VLWRTLLGSCKI 370 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~ll~~~~~ 370 (551)
|++++|.+.|++..+-+..... ..++..+...+.+.|++++|.++|++.... +. ..+-..+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 4555555555544432211111 233444555566666666666666542111 01 111122234445
Q ss_pred cCcHHHHHHHHHHHHhhcCC
Q 048830 371 HRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~ 390 (551)
.||...|...+++....+|.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTT
T ss_pred cCCHHHHHHHHHHHHhhCCC
Confidence 66777777777777776664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00047 Score=50.43 Aligned_cols=58 Identities=7% Similarity=-0.082 Sum_probs=52.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
...+...++++.|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999999887644
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0014 Score=55.58 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=56.8
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----CHHHH
Q 048830 288 HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLK-PGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----DPVLW 361 (551)
Q Consensus 288 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 361 (551)
.|+...-..|..+....|+..+|...|++... |+- -|....-.+.++....+++.+|...+++.|+. .+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44444444455555555555555555555443 222 23444444444444555555555554443322 23333
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHH
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
-.+...+...|....|+..|+.++.--|. +..-...+..+.++|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 33444455555555555555555544443 3333344444555554444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.015 Score=49.54 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=69.7
Q ss_pred CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC--CcchH
Q 048830 322 NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA--SAGDY 395 (551)
Q Consensus 322 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 395 (551)
.+.|++..-..|..++.+.|+..+|...|++++.. |....-.+.++....++...|...++++.+-+|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45566666666777777777777777777765544 6666666667777777777777777777776654 45666
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 396 VLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
..++..|...|++++|+..|+...+.-..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 667777777777777777776665544333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00021 Score=51.61 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=49.2
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhhcC
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHR-NVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 389 (551)
...|..+...+...|++++|+..|++++.. +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666777777778888888777775544 7778888888888888 78899999999888887
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=62.29 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=101.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh-cCCHHHHHHHHhhcCCC---CHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR-AGKLEKALEVINTSSPS---DPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~~~~~ll~~ 367 (551)
.+|..++...-+.+..+.|..+|.++.+. -..+..+|.....+-.. .++.+.|.++|+.++.. +...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888999999999999743 22345556666666444 56777799999997766 99999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCc---chHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...++.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766544 58889999999999999999999888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0086 Score=50.15 Aligned_cols=103 Identities=7% Similarity=-0.084 Sum_probs=71.5
Q ss_pred HhcCC-CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 048830 45 FNQIQ-NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC 123 (551)
Q Consensus 45 f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 123 (551)
+..+. +.+....-.+...+.+.|++++|..+|+.+....+ -+..-|-.|..++-..|++++|...|....... +.|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~dd 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDA 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 34444 44555555666667777888888888887777664 355556667777777788888888888777765 456
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHhccC
Q 048830 124 VVVSTNLMRGYAANGVIEAARSVFDNM 150 (551)
Q Consensus 124 ~~~~~~li~~y~~~g~~~~A~~~~~~m 150 (551)
+..+-.+..+|...|+.+.|++.|+..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777777777777777777777654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.055 Score=52.03 Aligned_cols=151 Identities=13% Similarity=-0.022 Sum_probs=96.9
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhcCCHHHHHHHHHhcCCCCHh---------------HHHHH
Q 048830 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALV--DMYAKCGNLDSAFCVFSRMRKRDVL---------------SWNSM 262 (551)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 262 (551)
+...++.++|.++-..+.+... ...+..++ .++.-.++.+.|...|++...-|+. .|..=
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 3556777777776666665431 12222222 2344456777788888776643322 22223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHh
Q 048830 263 IVGYGVHGRGDEAISFFKQMLMA---GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYG 338 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 338 (551)
..-..++|++.+|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.--+... .+.|. +..|..-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHH
Confidence 34456789999999999888763 345566667777777888899999888877665 34443 344444455666
Q ss_pred hcCCHHHHHHHHhhcCCC
Q 048830 339 RAGKLEKALEVINTSSPS 356 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~ 356 (551)
..++|++|.+-|+++|+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 678889999988887776
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00019 Score=43.22 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0057 Score=60.58 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=80.9
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC----CChhHHHH
Q 048830 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRS--GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE----RDLVSWNS 160 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~ 160 (551)
.+...+..+++.+....+++.+..++-..... ....-+.+..+++..|.+.|..+.+..+++.=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 45666777777777777777777777666543 1222234455777777777777777777766544 77777777
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhc
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV 203 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 203 (551)
|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777766666777777666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0064 Score=62.66 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=101.2
Q ss_pred CCCHhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 048830 253 KRDVLSWNSMIVGYGV--HG---RGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQ--------GLVEEGVEYFHMMV 318 (551)
Q Consensus 253 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~--------g~~~~a~~~~~~~~ 318 (551)
..|..+|...+.+... .+ ...+|..+|++..+. .|+. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3588899999988544 32 377999999999985 6775 4555544444322 12334444444432
Q ss_pred HhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.......+...|..+.-.+...|++++|...+++++.. +...|..+...+...|+.++|...+++++.++|.+|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21112335577888877777889999999999997776 7778888899999999999999999999999999885
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00028 Score=50.82 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=35.1
Q ss_pred hcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 339 RAGKLEKALEVINTSS---PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
..|++++|.++|++++ |.+..++..+..+|...|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4455666666555532 22566666666666666666666666666666666655444443
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00075 Score=50.97 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=53.1
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHH
Q 048830 269 HGRGDEAISFFKQMLMAGF-HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 269 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 346 (551)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++.. ...| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5778888888888887532 124445555778888888888888888772 2333 234444557778888888888
Q ss_pred HHHHhh
Q 048830 347 LEVINT 352 (551)
Q Consensus 347 ~~~~~~ 352 (551)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0067 Score=47.17 Aligned_cols=80 Identities=11% Similarity=-0.102 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCc-ccCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 048830 158 WNSIISCYTQASFHLEALKLYERMRFEDV-GLDGFTLVCLLSSCAHVG--------ALNMGIFLHRIACEMGFVESVYVG 228 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 228 (551)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+...+|+.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999887653 244566788899999999999999
Q ss_pred HHHHHHHHh
Q 048830 229 NALVDMYAK 237 (551)
Q Consensus 229 ~~li~~y~~ 237 (551)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.063 Score=49.68 Aligned_cols=172 Identities=10% Similarity=0.039 Sum_probs=102.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCH-hH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRK--RDV-LS---WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH- 303 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 303 (551)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|...+++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445567777788777777754 221 11 223456677788888888888888774211111233333333221
Q ss_pred -c---------------CC---HHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHH
Q 048830 304 -Q---------------GL---VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRT 363 (551)
Q Consensus 304 -~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 363 (551)
. .+ ...|...|+.+++++ |+ ..-..+|...+.. +.. -..---.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~-l~~~la~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVF-LKDRLAKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHH-HHHHHHHHHHH
Confidence 1 11 234445555555442 22 2334445443333 221 0111113
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
....|.+.|.+..|..-++.+++.-|+. +.+...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4566888999999999999999988775 4567788999999999999999887654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.023 Score=51.16 Aligned_cols=181 Identities=12% Similarity=0.004 Sum_probs=118.5
Q ss_pred hhhhhhHhhhhccCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--CChh--------hHHHHHHHHHcCCChhHH
Q 048830 3 LKKHARYVGLNKARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--PQTQ--------AWNSLIRAFAQSLSPLQA 72 (551)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--~~~~--------~~~~li~~~~~~g~~~~A 72 (551)
|-+|+.+.. .. |+ -+++|++.+.-. .-+++-...|+.-.. ..+. .-+.++..+.-.|.+.-.
T Consensus 125 R~lhAe~~~-~l---gn--pqesLdRl~~L~--~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 125 RILHAELQQ-YL---GN--PQESLDRLHKLK--TVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred HHHHHHHHH-hc---CC--cHHHHHHHHHHH--HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhh
Confidence 345666642 22 22 367788777765 556666666654322 2232 335667777777888888
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-----HHHHHHHHHHhCCCHHHHHHHh
Q 048830 73 IFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV-----VSTNLMRGYAANGVIEAARSVF 147 (551)
Q Consensus 73 ~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~y~~~g~~~~A~~~~ 147 (551)
+.++.+..+...+ .++...+.+.+.-.+.|+.+.|...|+...+..-..|.. +.-.....|.-..++..|.+.|
T Consensus 197 ~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 8888888887765 677777788888888889888888888777643233333 3333344566677888888888
Q ss_pred ccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHH
Q 048830 148 DNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLV 194 (551)
Q Consensus 148 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 194 (551)
++++. .|++.-|.-.-+..-.|+..+|++....|.+. .|...+-.
T Consensus 276 ~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 88776 45555665555566678888888888888764 34444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0049 Score=47.89 Aligned_cols=81 Identities=7% Similarity=-0.013 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK--------ALNKCQELHGFVIRSGYERCVVVS 127 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 127 (551)
-...|..+...+++...-.+|+.+.+.|+..|+..+|+.++.+.++.. .+-..+.+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 345566677779999999999999999993399999999999887653 244567889999999999999999
Q ss_pred HHHHHHHHh
Q 048830 128 TNLMRGYAA 136 (551)
Q Consensus 128 ~~li~~y~~ 136 (551)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.011 Score=47.75 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=65.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHh
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYG 338 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 338 (551)
...++-..|+.++|+.+|++....|...+. ..+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999988866553 4666778888899999999999998876532211 1222223445677
Q ss_pred hcCCHHHHHHHHhh
Q 048830 339 RAGKLEKALEVINT 352 (551)
Q Consensus 339 ~~g~~~~A~~~~~~ 352 (551)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888887765
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0043 Score=54.44 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=73.5
Q ss_pred HHHHHhc--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-------------
Q 048830 245 FCVFSRM--RKRDVLSWNSMIVGYGV-----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ------------- 304 (551)
Q Consensus 245 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 304 (551)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455554 45677777777777764 466777777888888888888888898888887542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 305 ---GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 305 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
.+.+-|++++++|. .+|+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 13567899999994 46999999999999999877764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.11 Score=53.31 Aligned_cols=151 Identities=10% Similarity=0.068 Sum_probs=90.6
Q ss_pred CChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHhccCChHHHHHH
Q 048830 36 SSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD----TFTFTFTLKACERVKALNKCQEL 111 (551)
Q Consensus 36 g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd----~~~~~~ll~~~~~~~~~~~a~~~ 111 (551)
|++++|++++-.|..+|.. |..+.+-|++-...++++. |....| ...++.+...++....++.|.+.
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777787777777776654 4555666666666655532 211011 13566677777777777777776
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH
Q 048830 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191 (551)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 191 (551)
+..-.. . ...+.+|.+..++++-+.+-+.+++. ....-.|...+...|.-++|.+.|-+-- .|
T Consensus 819 Y~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p--- 881 (1189)
T KOG2041|consen 819 YSYCGD------T---ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP--- 881 (1189)
T ss_pred HHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc---
Confidence 654321 1 23566666666777766666666653 3344567777777888888777764331 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 048830 192 TLVCLLSSCAHVGALNMGIFLHR 214 (551)
Q Consensus 192 t~~~ll~~~~~~~~~~~a~~~~~ 214 (551)
...+..|...+++.+|.++-+
T Consensus 882 --kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 134456777777777766544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0049 Score=49.67 Aligned_cols=86 Identities=10% Similarity=-0.041 Sum_probs=61.8
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC---CcchHHHHHHHhh
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA---SAGDYVLLATIYA 403 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 403 (551)
+..++-..|+.++|+.+|++++.. -...+-.+.+.++..|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555667777777777765543 1334555667888888888888888888887777 6666677778888
Q ss_pred hcCChhHHHHHHHHH
Q 048830 404 CTKDEEGVARTRKLI 418 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m 418 (551)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889988888877543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0057 Score=60.54 Aligned_cols=120 Identities=8% Similarity=-0.021 Sum_probs=97.4
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-C-----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHH
Q 048830 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-R-----DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192 (551)
Q Consensus 119 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 192 (551)
+.+.+......+++......+++.+..++-+... | -..+..++++.|.+.|..++++.++..=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3455666777788888888888888888766653 1 123456999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048830 193 LVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC 238 (551)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 238 (551)
++.+|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877766766666666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=42.46 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
.+|..+..+|...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999998888764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.35 Score=46.63 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 309 (551)
.-+.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-..+... .- .+.-|-.++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHH
Confidence 3355556778888888888888878888888888888888888876665432 11 34777888888888888888
Q ss_pred HHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 310 GVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 310 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 88877653 124567888888888888776444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.013 Score=49.64 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=73.1
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
....++.+.+...++.+...+.-++ +... ..-+......+++ . -......++..+...|+++.|.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~-~--~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRE-L--YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHH-H--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHH-H--HHHHHHHHHHHHHhccCHHHHH
Confidence 3456778888888888776543222 2111 1112222222222 0 1235556777888999999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH-----hCCCccC
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK-----SNGIKTT 426 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~ 426 (551)
..+++++..+|.+...|..++.+|...|+..+|.+.++.+. +.|+.|.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 99999999999999999999999999999999999998774 3577764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.19 Score=46.48 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=32.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHh
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVIN 351 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (551)
+..-|.+.|.+..|..-++.+++.+.-.| ..+....++.+|...|..++|.++..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44456666666666666666666554333 34445556666666666666655543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.65 Score=49.38 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHh-----cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 236 AKCGNLDSAFCVFSR-----MRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
...|++++|.+++.. ...-+...-+.-+..+...+++.+..++-.++...
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 344555555555521 11123333333444455555555555555555554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.049 Score=49.11 Aligned_cols=133 Identities=10% Similarity=-0.077 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchh-----
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG----- 331 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----- 331 (551)
...+.++..+.-.|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+. .-..+-...+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3455667777777888888888888888765666677778888888899999999999877554 2222222222
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
.....|.-+.++.+|...+++ ++. |+..-|.-.-+..-.|+...|.+..+.+.+..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~-i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTE-ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhh-ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 333445566777777777776 433 55555554444455677777777777777777663
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.063 Score=52.15 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---C----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRKR---D----VLSWNSMIVGYGV---HGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 299 (551)
.|+-.|....+++...++.+.+... + ...--...-++-+ .|+.++|+.++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677888888888888877653 1 1111223344555 7888888888888666556777777777766
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHH----HHH--------hhcC-CC-
Q 048830 300 GCSH---------QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL----EVI--------NTSS-PS- 356 (551)
Q Consensus 300 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~--------~~~~-~~- 356 (551)
.|-. ....++|...|.+. +.+.|+..+--.++.++...|.-.+.. ++- ++.. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 22366677777655 345565443333444444444322211 111 0000 01
Q ss_pred -CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 357 -DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 357 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+--.+.+++.++.-.|+.++|.+++++++++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3344455666666677777777777777766544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0032 Score=45.93 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=52.6
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
-..|.+.+++++|.+++++++.. ++..|......+...|++++|...++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35678888888888888885544 78888888899999999999999999999999987765443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0039 Score=61.15 Aligned_cols=65 Identities=12% Similarity=-0.038 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc---hHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG---DYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...|+.+..+|...|++++|+..|+++++++|+++. +|..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6777888888888888888888888888888888774 3888888888888888888888777664
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0075 Score=52.99 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=73.7
Q ss_pred HHHHHHhcC--CCCChhhHHHHHHHHHcC-----CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcc----------
Q 048830 40 YAQLLFNQI--QNPQTQAWNSLIRAFAQS-----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV---------- 102 (551)
Q Consensus 40 ~A~~lf~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~---------- 102 (551)
--...|+.. ..+|..+|..+++.|.+. |..+-....+..|.+.|+. -|..+|+.||+.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~-kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE-KDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc-ccHHHHHHHHHhCCCCCcccccHHHH
Confidence 345566665 467888888888888654 5566667778888888888 8888999988876542
Q ss_pred ------CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 103 ------KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 103 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
.+-+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345677888888888888888888888888766654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.5 Score=45.57 Aligned_cols=111 Identities=7% Similarity=0.079 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 371 (551)
.+.+.-+.-|...|....|.++-... .+ |+...|...+.+|+..++|++-.++... ...+.-|..++.+|...
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHC
Confidence 45556667777888888887765444 55 8888999999999999999998887653 33788999999999999
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
|+..+|.....++ .+..-..+|.+.|.|.+|.+.-.+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999998887772 2356778899999999998865443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.14 Score=46.12 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=83.9
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHh---
Q 048830 234 MYAKCGNLDSAFCVFSRMRK--R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCS--- 302 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~--- 302 (551)
.+...|++++|.+.|+.+.. | -..+.-.++.++.+.|++++|...+++.... -|+. .-+...+.+.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34455556666655555542 1 1123344555666666666666666666553 2221 11111111111
Q ss_pred ----------ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhc
Q 048830 303 ----------HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIH 371 (551)
Q Consensus 303 ----------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~ 371 (551)
..+...+|...|+.++++ |-......+|...+.. +.. -..---.+...|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~-l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAE-LRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 122334555555555544 3333344455444433 221 011112245678899
Q ss_pred CcHHHHHHHHHHHHhhcCCCc---chHHHHHHHhhhcCChhHHH
Q 048830 372 RNVEIGEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 412 (551)
|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999998864 45678888999999888543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=55.51 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=156.1
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhh----HHHHHHHHhccCChHHHHHHHHHHHH----hCCC-CChhHHHHHHH
Q 048830 62 AFAQSLSPLQAIFYYNHMLMASLSRPDTFT----FTFTLKACERVKALNKCQELHGFVIR----SGYE-RCVVVSTNLMR 132 (551)
Q Consensus 62 ~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~ 132 (551)
-+++.|+....+.+|+..++.|- -|..| |+.|.++|.-.+++++|.+++..=+. .|-. -.......|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 46788889999999999888875 35443 55666777777888888887654221 1100 01122233444
Q ss_pred HHHhCCCHHHHHHHhccCC-------C--CChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHh--
Q 048830 133 GYAANGVIEAARSVFDNMP-------E--RDLVSWNSIISCYTQASF--------------------HLEALKLYERM-- 181 (551)
Q Consensus 133 ~y~~~g~~~~A~~~~~~m~-------~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m-- 181 (551)
.+--.|.+++|...-.+-. . ....++..+...|...|+ ++.|.++|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4555566666654432211 1 112234445555654432 22344444321
Q ss_pred --hhCCcc-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 048830 182 --RFEDVG-LDGFTLVCLLSSCAHVGALNMGIFLHRIACE----MGFV-ESVYVGNALVDMYAKCGNLDSAFCVFSRMR- 252 (551)
Q Consensus 182 --~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 252 (551)
.+.|-. .-...|..+.+.|.-.|+++.|...++.-+. .|-. .....+..|.++|.-.|+++.|.+.|....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111110 1123455555666667889999988876443 2322 224567888999999999999999887643
Q ss_pred ------CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 253 ------KR--DVLSWNSMIVGYGVHGRGDEAISFFKQMLM----A-GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 253 ------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.+ ...+.-++...|.-..++++|+.++.+-.. . ...-....+.+|..+|...|..++|+.+.+.-++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23 334556678888888889999988876432 1 1223456788999999999999999887776544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.16 Score=52.06 Aligned_cols=247 Identities=14% Similarity=0.033 Sum_probs=124.9
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CChhH------------HHHHHHHHHhcCChHHHHHHHHHhhhCCcc
Q 048830 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVS------------WNSIISCYTQASFHLEALKLYERMRFEDVG 187 (551)
Q Consensus 121 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 187 (551)
.|.+..|..|.....+.-.++.|+..|-+... +.+.. -.+=|.+| -|++++|.++|-+|...++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 57788888888777777778888877766543 22111 11112222 3677777777766654432
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVES----VYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMI 263 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 263 (551)
.+...-+.|++-.+.++++. -|-..| ...++.+.+.++....+++|.+.|..-... ...+
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ 829 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQI 829 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHH
Confidence 23334445555444443321 111111 235566666666666666666665543311 1133
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCH
Q 048830 264 VGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 343 (551)
.+|.+..++++-+.+-+. ++-|....-.+...+...|.-++|.+.|-+. +. | ..-+..+....++
T Consensus 830 ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~-p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR----SL-P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc----cC-c-----HHHHHHHHHHHHH
Confidence 444444444333333222 2334445556667777777777777766433 11 2 1345566667777
Q ss_pred HHHHHHHhhcCCC-CHHHHH--------------HHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 344 EKALEVINTSSPS-DPVLWR--------------TLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 344 ~~A~~~~~~~~~~-~~~~~~--------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
.+|.++-++ ... ...+.- --+..+++.|..-.|.+++.+|-+.+......|..+-..|
T Consensus 895 ~~avelaq~-~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklY 967 (1189)
T KOG2041|consen 895 GEAVELAQR-FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLY 967 (1189)
T ss_pred HHHHHHHHh-ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHH
Confidence 777777665 333 111110 0123344555555555555555555544444444443333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.025 Score=52.82 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=50.1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcC---CC---CHHHHHHHHHHHHhcCcH
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSS---PS---DPVLWRTLLGSCKIHRNV 374 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~---~~~~~~~ll~~~~~~g~~ 374 (551)
.+.|++++|...|+.+++.+.-.+ ....+..+..+|...|++++|...|+..+ |. ....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344556666666666554432111 02334455555555666666655555533 22 333444445556667777
Q ss_pred HHHHHHHHHHHhhcCCCc
Q 048830 375 EIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~ 392 (551)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 777777777777777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.25 Score=50.37 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCC-----------CCChhhHHHHHHHHHcCCC--hhHHHHHHHHHHHcCC
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ-----------NPQTQAWNSLIRAFAQSLS--PLQAIFYYNHMLMASL 84 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~-----------~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~~~ 84 (551)
+-++-+.+-+..|... |.+++|.++----. .-+.-.++..-.+|.+-.+ +-+.+.-+++|.+.|-
T Consensus 554 ~~evp~~~~m~q~Iea--g~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIER--GLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhc--cchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 4444455555667777 88888765421100 0122223444455655444 3355555677888887
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHh
Q 048830 85 SRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF 147 (551)
Q Consensus 85 ~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 147 (551)
. |+.... ...|+-.|.+.+|-++|. +.|.+ |-.+.+|.....+|.|.++.
T Consensus 632 ~-P~~iLl---A~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 632 T-PNDLLL---ADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred C-chHHHH---HHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHh
Confidence 7 877643 445666788888888774 33432 23455555555555555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=55.22 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=76.8
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC---C---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHH
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS---D---PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLL 398 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 398 (551)
..|..-+..+.+.|++++|...|+..+.. + +..+.-+..+|...|+++.|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555556667789999999998874432 2 4677788899999999999999999999988875 5567778
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|.++++...+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999988654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.013 Score=46.73 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=72.9
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC----cchHHHHHHHhhhcCCh
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS----AGDYVLLATIYACTKDE 408 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 408 (551)
++...|+++.|++.|.+++.. .+..||.-..+++-.|+.++|+.-+++++++..+. -..|+.-+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788999999988875544 88999999999999999999999999999985332 23677888899999999
Q ss_pred hHHHHHHHHHHhCCC
Q 048830 409 EGVARTRKLIKSNGI 423 (551)
Q Consensus 409 ~~a~~~~~~m~~~g~ 423 (551)
+.|+.-|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.41 Score=43.01 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHH
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 346 (551)
+..-|.+.|.+..|..-++.+++.+.-.+ .......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 44556666666666666666666543332 123444555666666655533
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.26 Score=39.66 Aligned_cols=141 Identities=11% Similarity=0.119 Sum_probs=85.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 345 (551)
+.-.|..++..++..+..... +..-++-++.-....-+-+-..+.++..-+-+.+. .+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 345678888888888877642 44555555554444444455556666553332222 2344444
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 346 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
...-+-. +..+.......+.+....|.-+.-.+++..+.+.+..+|.....++++|.+.|+..++.+++.++-++|++
T Consensus 75 Vi~C~~~-~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAK-RNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHH-hcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4443333 33344555667778888999999999999998777777999999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.028 Score=54.06 Aligned_cols=64 Identities=3% Similarity=-0.106 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..++..|..+|.+.+++..|+....++++++|+|..+...-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567788888999999999999999999999999999999999999999999999999999763
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1 Score=43.41 Aligned_cols=241 Identities=14% Similarity=0.089 Sum_probs=146.5
Q ss_pred cCChHHHHHHHHHhhhCCcccCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048830 168 ASFHLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF 245 (551)
Q Consensus 168 ~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 245 (551)
.|+++.|.+-|+.|... |... -...+.-.--+.|..+.|.+.-+..-..- +.-...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 46666666666666531 2111 11112222234566666666555554432 112456667777777778888887
Q ss_pred HHHHhcC-----CCCHh--HHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCCHHHHHHHH
Q 048830 246 CVFSRMR-----KRDVL--SWNSMIVGYG---VHGRGDEAISFFKQMLMAGFHPDSIT-FLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 246 ~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~ 314 (551)
++.+.-. ++|.. .-..|+.+-+ -.-+...|...-.+..+ +.||..- -..-..++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 7777543 23332 1122222211 12334555554444443 5676543 233456788999999999999
Q ss_pred HHhHHhcCCCCCccchhhhhHHHhhcCCHHHHH----HHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC
Q 048830 315 HMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKAL----EVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 389 (551)
+.+-+ ..|.+.++... .+.+.|+..... +-++. |+. +..+.-.+..+-...|++..|..-.+.+....|
T Consensus 287 E~aWK---~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s-lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 287 ETAWK---AEPHPDIALLY--VRARSGDTALDRLKRAKKLES-LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHHh---cCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh-cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 98864 45655444332 234555432221 22344 555 888888888898999999999999999999998
Q ss_pred CCcchHHHHHHHhhhc-CChhHHHHHHHHHHhC
Q 048830 390 ASAGDYVLLATIYACT-KDEEGVARTRKLIKSN 421 (551)
Q Consensus 390 ~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 421 (551)
. .+.|..|+++-... |+-.+++..+-+..+.
T Consensus 361 r-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 361 R-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8 66888999887766 9999998888776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0077 Score=44.58 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhc----CC---CcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLE----AA---SAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
.+++.+...|...|++++|+..+++++++. ++ -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456667777777777777777777777542 11 24578889999999999999999988764
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0059 Score=45.20 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=16.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.+++.+...|...|++++|+..|++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666666666665543
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.20 E-value=2.5 Score=46.64 Aligned_cols=156 Identities=22% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 138 GVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217 (551)
Q Consensus 138 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (551)
++++.|+.-+.++. ...|+-.+..--+.|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 45555555555543 223444444444566666666664 67777776666665431 11
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh--hHH
Q 048830 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI--TFL 295 (551)
Q Consensus 218 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~ 295 (551)
+. ..|+--.-+|.++|+.++|.+. |...|+|.+|+.+-.+|... -|.. +-.
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAE 1003 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHH
Confidence 11 1122233456777777777554 44567888888777766431 1221 124
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.|..-+...+++-+|-++..+.... ..--+..|++.-.+++|..+...
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 5666677777777777776666432 23455667777778888777655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.064 Score=53.01 Aligned_cols=79 Identities=14% Similarity=0.038 Sum_probs=64.4
Q ss_pred CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 342 KLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 342 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
...+|.++.++++.. |+.....+..+....++.+.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++.
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666665555 88888888887788888999999999999999999999999999999999999999888875
Q ss_pred Hh
Q 048830 419 KS 420 (551)
Q Consensus 419 ~~ 420 (551)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 54
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.064 Score=51.68 Aligned_cols=136 Identities=10% Similarity=-0.057 Sum_probs=97.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 263 IVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 263 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
...|.+.|++..|...|++.... |. +...-+.++...... .-..++..|.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 55677888888888888876642 00 111111122222111 112346667788889999
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHH-HHHHHHH
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV-ARTRKLI 418 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 418 (551)
+.+|++.-++++.. |.-..--=..+|...|+++.|+..|+++++++|.|..+-..|+.+-.+.....+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775655 7777777778999999999999999999999999999888888888887776655 6788888
Q ss_pred Hh
Q 048830 419 KS 420 (551)
Q Consensus 419 ~~ 420 (551)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.061 Score=43.81 Aligned_cols=52 Identities=10% Similarity=0.210 Sum_probs=38.9
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 286 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
...|+..+..+++.+|+..+++..|.++.+...+.|+++-+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567778888888888888888888888888887777666666776666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.85 E-value=2.9 Score=43.84 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
+.-+..-|+..+|.++-.+..=||-..|-.-+.+++..+++++-+++-+.+. .+.-|.....+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHh
Confidence 3334555777777777777776777777666777777777766555444332 1344556667777777777777
Q ss_pred HHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 312 EYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
+++.+.. +. .-.+.+|.+.|++.+|.++--+
T Consensus 765 KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 7665441 11 1456677777777777665433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.14 Score=47.61 Aligned_cols=108 Identities=8% Similarity=-0.039 Sum_probs=83.4
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC---CHHHHHHHhccCC
Q 048830 75 YYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG---VIEAARSVFDNMP 151 (551)
Q Consensus 75 l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~ 151 (551)
-++.-+..++ -|...|-.|..+|...|+++.|...|....+.. ++++..+..+..++.... +..++..+|+++.
T Consensus 144 ~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3344445554 578899999999999999999999999998874 567777777776654432 3567889999887
Q ss_pred C---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 048830 152 E---RDLVSWNSIISCYTQASFHLEALKLYERMRFED 185 (551)
Q Consensus 152 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 185 (551)
. .|+.+-..|...+...|++.+|...|+.|.+..
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 5 356677778888999999999999999998763
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.5 Score=39.48 Aligned_cols=192 Identities=17% Similarity=0.092 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMR-----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 299 (551)
..........+...+++..+...+.... ......+......+...++..++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444555555556666666555555443 12334444555555556666666666666655332221 11111222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCCCC----CccchhhhhHHHhhcCCHHHHHHHHhhcCCC--C--HHHHHHHHHHHHh
Q 048830 300 -GCSHQGLVEEGVEYFHMMVSRYNLKP----GIKHYGCLVDLYGRAGKLEKALEVINTSSPS--D--PVLWRTLLGSCKI 370 (551)
Q Consensus 300 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~ll~~~~~ 370 (551)
.+...|+++.|...+..... ..| ....+......+...++.++|...+.+++.. + ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 55666666777666666632 222 2222333333355566777777776664443 2 4556666677777
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.++.+.+...+.......|.....+..+...+...|.++++...+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777776555666666666666667777777766554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.2 Score=41.24 Aligned_cols=304 Identities=14% Similarity=0.036 Sum_probs=178.3
Q ss_pred ChHHHHHHHhcCCCCChhhHHHHHHHHH--cCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH--hccCChHHHHHHH
Q 048830 37 SLSYAQLLFNQIQNPQTQAWNSLIRAFA--QSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKAC--ERVKALNKCQELH 112 (551)
Q Consensus 37 ~~~~A~~lf~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~--~~~~~~~~a~~~~ 112 (551)
....+.+.|..-.. -.-|.+|-.++. -.|+-..|.++-.+.... +. -|...+..++.+- .-.|+.+.|.+-|
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-ls-sDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LS-SDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hh-ccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 35556666654321 223455554443 345666666665554322 12 4666666666553 3458888888888
Q ss_pred HHHHHhCCCCChhHH--HHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC-c
Q 048830 113 GFVIRSGYERCVVVS--TNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFED-V 186 (551)
Q Consensus 113 ~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 186 (551)
+.|... |..... ..|.---.+.|+.+.|++.-+..-+ | -...|.+.+...+..|+|+.|+++.+.-+... +
T Consensus 144 eAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 144 EAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 888642 222211 1222223466777777776665543 2 23467778888888888888888887765433 3
Q ss_pred ccCHH--HHHHHHHHHHh---cCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCC--CCHhH
Q 048830 187 GLDGF--TLVCLLSSCAH---VGALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLDSAFCVFSRMRK--RDVLS 258 (551)
Q Consensus 187 ~p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~ 258 (551)
.++.. .-..++.+-+. ..+...|...-.+..+ +.||..-- -.-..+|.+.|++.++-.+++.+-+ |.+..
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 34433 22333333221 2345566666555555 34443222 2234678888888888888888764 44443
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLM-AGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
|. +..+.+.|+ .++.-+++... ..++||. .....+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 299 a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 299 AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 33 223334444 44555554443 2356655 556667777788888888877666554 567888888888877
Q ss_pred Hh-hcCCHHHHHHHHhhcCCC
Q 048830 337 YG-RAGKLEKALEVINTSSPS 356 (551)
Q Consensus 337 ~~-~~g~~~~A~~~~~~~~~~ 356 (551)
-. ..|+-.++...+-+++..
T Consensus 372 eeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhhccCchHHHHHHHHHHhcC
Confidence 64 448888888888776654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=3.8 Score=43.79 Aligned_cols=77 Identities=8% Similarity=-0.054 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC
Q 048830 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204 (551)
Q Consensus 126 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 204 (551)
.-..-+..+.+.++++...+.+..- ..+...-.....+....|+.++|......+-..| .........++..+.+.|
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 3344455566777787777744332 2344445566667777788777766666665444 223344455555554444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.071 Score=45.03 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCChhHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR-----SGYERCVVVS 127 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 127 (551)
...++..+...|++++|+.+.+.+....+ -|...|..+|.++...|+...|.+.|..+.+ .|++|++.+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44566677889999999999999998876 5788999999999999999999999988753 5888887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.13 Score=42.50 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=38.2
Q ss_pred hhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 338 GRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.+.|++++|.+.|+. +.. ....--.|+.++.+.+++++|...+++.++++|.++.
T Consensus 21 l~~~~Y~~A~~~le~-L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEA-LDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHH-HHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 345666666665555 322 3444556777888888899999999999999988754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.22 Score=47.25 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=24.2
Q ss_pred HHhcCChHHHHHHHHHhhhCC--cccCHHHHHHHHHHHHhcCChHHHHH
Q 048830 165 YTQASFHLEALKLYERMRFED--VGLDGFTLVCLLSSCAHVGALNMGIF 211 (551)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~ 211 (551)
+....+.++|+..|.+-...- ...--.+|..+..+.+..|..+++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345566677777766654321 11122355555556666665555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.5 Score=44.51 Aligned_cols=159 Identities=11% Similarity=-0.000 Sum_probs=100.7
Q ss_pred HHHHcCCChhHHHHHHHHHH-HcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 61 RAFAQSLSPLQAIFYYNHML-MASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 61 ~~~~~~g~~~~A~~l~~~m~-~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
....-.++++++.++.+.-. -..+ | ..-.+.+++.+-+.|..+.|+++- .|+. .-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~-~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--P-KDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--C-hhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCC
Confidence 34456678888776665211 1111 3 445677888888888888888763 3332 34566778999
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 048830 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (551)
++.|.++-++.. +...|..|.....+.|+++-|.+.|.+... +..++-.|.-.|+.+.-.++.......
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999887776 566899999999999999999999987753 455666677778887777777776665
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 220 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
|- +|....++...|+.++..+++.+.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 52 344445555667777777666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.11 Score=47.38 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=80.9
Q ss_pred HHHHHHHhcC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC----------
Q 048830 243 SAFCVFSRMR--KRDVLSWNSMIVGYGVH-----GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG---------- 305 (551)
Q Consensus 243 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 305 (551)
..+..|.... ++|-.+|-+++..|..+ +.++=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677666 67888898888888654 557777778899999999999999999999876543
Q ss_pred ------CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHH
Q 048830 306 ------LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344 (551)
Q Consensus 306 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 344 (551)
.-+-++.++++| +.+|+.||.++-..|++++++.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 234588999999 45699999999999999999988643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.84 Score=43.45 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=31.0
Q ss_pred HHhccCCHHHHHHHHHHhHHh---cCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 300 GCSHQGLVEEGVEYFHMMVSR---YNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
++...|.+..|.+.-++..+- .|-.| ......++.+.|...|+.+.|..-|+++|..
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 444555555555555544331 12222 2334456667777777777777777665544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.4 Score=43.15 Aligned_cols=73 Identities=15% Similarity=-0.007 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCHHHHHHHhccCCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHhhhCCcccCHHHHHHHH
Q 048830 128 TNLMRGYAANGVIEAARSVFDNMPER-------DLVSWNSIISCYTQ---ASFHLEALKLYERMRFEDVGLDGFTLVCLL 197 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 197 (551)
..|+-.|-...+++..+++++.+... ....-.....++.+ .|+.++|++++..+......++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888888753 11122233445556 788888999888866666677888887777
Q ss_pred HHH
Q 048830 198 SSC 200 (551)
Q Consensus 198 ~~~ 200 (551)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 665
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.86 Score=46.75 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----hhHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCccc
Q 048830 260 NSMIVGYGVHGRGDEAISFFKQMLMAG-FHPDS-----ITFLGLLCGCSH----QGLVEEGVEYFHMMVSRYNLKPGIKH 329 (551)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~ 329 (551)
..+++...-.|+-+.+++.+.+..+.+ +.-.. .+|..++..++. ....+.|.++++.+.++| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 344455555666666666666554421 11111 123333433332 456788999999887653 55444
Q ss_pred hh-hhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH-HHH
Q 048830 330 YG-CLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL-LAT 400 (551)
Q Consensus 330 ~~-~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~ 400 (551)
|. .-...+...|++++|.+.|++++.. ....+--++..+....++++|...+.++.+.+.-+...|.. .+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 3346677789999999999975643 34445556667778899999999999999987776666665 445
Q ss_pred HhhhcCCh-------hHHHHHHHHHHh
Q 048830 401 IYACTKDE-------EGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~-------~~a~~~~~~m~~ 420 (551)
++...|+. ++|.+++.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56667888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.32 E-value=3.2 Score=40.80 Aligned_cols=148 Identities=12% Similarity=-0.021 Sum_probs=87.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--Ccc
Q 048830 254 RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHP---DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP--GIK 328 (551)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~ 328 (551)
....+|..+...+.+.|+++.|...+.++...+..+ +......-+......|+..+|...++...+. .+.. +..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 455678888999999999999999999888754222 3334444556667788889999988888762 1111 111
Q ss_pred chhhhhHHHhhcCCHHHHHHHH-hhcCCC--CHHHHHHHHHHHHhc------CcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 329 HYGCLVDLYGRAGKLEKALEVI-NTSSPS--DPVLWRTLLGSCKIH------RNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~--~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
....+...+.. ..+.....- .. ... -...+..+...+... ++.+.+...|+.+.++.|.....|..++
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDK-ESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred cHHHHhhcccc--ccccccccchhh-hhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 11111111100 000000000 00 000 123344444444444 8899999999999999998888888777
Q ss_pred HHhhhc
Q 048830 400 TIYACT 405 (551)
Q Consensus 400 ~~~~~~ 405 (551)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 666443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.088 Score=51.96 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc----cchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI----KHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
..++.+..+|...|++++|...|++.+ .+.|+. ..|..+..+|...|++++|++.+++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555555555555555555543 233432 1244445555555555555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=5 Score=42.23 Aligned_cols=305 Identities=10% Similarity=0.013 Sum_probs=165.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---HHHHHHHhccCCC--CChhHHHHHHHHHHhc
Q 048830 94 FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV---IEAARSVFDNMPE--RDLVSWNSIISCYTQA 168 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 168 (551)
.+++-+...+.+..|.++-..+-..-.. ...++.....-+.+..+ -+.+..+-+++.. ...++|..+..--...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 3455566667777777776555321111 14566666666666532 2334444444444 4556777777777788
Q ss_pred CChHHHHHHHHHhhhCCcc----cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----------CCCchhHHHHHHH
Q 048830 169 SFHLEALKLYERMRFEDVG----LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-----------FVESVYVGNALVD 233 (551)
Q Consensus 169 g~~~~A~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------~~~~~~~~~~li~ 233 (551)
|+.+-|..+++.=...+.. .+-.-+...+.-+...|+.+....+.-.+.+.- .+....+|.-++.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 8888888776532221110 011123344555566666666555554443321 1111122221111
Q ss_pred ---------HHHhcCCHHHHHHHHH--hcC-----CCCHhHHHHHHHHHHhcCC---hHHH-------HHHHHHHHH-cC
Q 048830 234 ---------MYAKCGNLDSAFCVFS--RMR-----KRDVLSWNSMIVGYGVHGR---GDEA-------ISFFKQMLM-AG 286 (551)
Q Consensus 234 ---------~y~~~g~~~~A~~~~~--~~~-----~~~~~~~~~li~~~~~~g~---~~~A-------~~~~~~m~~-~g 286 (551)
.|-. ++-..+...|. ... +.-..........+.+... -.+| +.+.+.+.. .|
T Consensus 601 ~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~ 679 (829)
T KOG2280|consen 601 HQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG 679 (829)
T ss_pred hhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 11111111111 100 0111111122233333222 1111 122222222 23
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 048830 287 FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLG 366 (551)
Q Consensus 287 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 366 (551)
..-...|.+--+.-+...|...+|.++-.+. . .||...|-.=+.+++..+++++-+++-++ .+ .+.-|.-+..
T Consensus 680 ~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAks-kk-sPIGy~PFVe 752 (829)
T KOG2280|consen 680 GSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKS-KK-SPIGYLPFVE 752 (829)
T ss_pred cccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhc-cC-CCCCchhHHH
Confidence 3344455666666777788888888876655 2 37888888888899999999988888776 55 3777888889
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHH
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
+|.+.|+.++|...+-+.-. +.-...+|.+.|++.+|.+.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 99999999998887655422 225677888889988887754
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.95 Score=45.04 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=104.7
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCCH-hhHHHHHHHHhc---------cCCHHHHHHHHHHhH
Q 048830 257 LSW--NSMIVGYGVH-----GRGDEAISFFKQMLM-AGFHPDS-ITFLGLLCGCSH---------QGLVEEGVEYFHMMV 318 (551)
Q Consensus 257 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~~~ 318 (551)
..| ..++.+.... ...+.|+.+|.+... ..+.|+. ..|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 6666655442 235678888988883 2356664 334333333221 223455666666665
Q ss_pred HhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcch
Q 048830 319 SRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD 394 (551)
Q Consensus 319 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 394 (551)
.+.| |......+..++.-.|+++.|..+|+++... .+..|......+.-.|+.++|.+.+++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 4455 6777777888888888999999999986654 67777777777888999999999999999999986544
Q ss_pred HH--HHHHHhhhcCChhHHHHHH
Q 048830 395 YV--LLATIYACTKDEEGVARTR 415 (551)
Q Consensus 395 ~~--~l~~~~~~~g~~~~a~~~~ 415 (551)
-. ..+++|...+ .++|.+++
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHH
Confidence 33 3444676664 56666665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.05 Score=32.53 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888999999999999999998886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.37 Score=39.25 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=26.5
Q ss_pred cccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchhHHHHHHH
Q 048830 186 VGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALVD 233 (551)
Q Consensus 186 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~ 233 (551)
..|+..+..+++.+|+..+++..|.++.+...+. +++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455666666666666666666666665555442 44444555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.09 E-value=3.9 Score=40.45 Aligned_cols=334 Identities=13% Similarity=0.070 Sum_probs=183.8
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCC--------CChhhHHHHHHHHHcC--------CC-------hhHHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQN--------PQTQAWNSLIRAFAQS--------LS-------PLQAIF 74 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~--------~~~~~~~~li~~~~~~--------g~-------~~~A~~ 74 (551)
+|...-+..+..+... |++.+++.++++|.+ -|+.+||.++-.+.++ .. ++.++-
T Consensus 126 ~df~l~~i~a~sLIe~--g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilf 203 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIET--GRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILF 203 (549)
T ss_pred hHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHH
Confidence 4556667778888888 999999999988752 3788888744333222 11 122222
Q ss_pred HHHHHHHc------CCCCCChhhHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCCHHHHHH
Q 048830 75 YYNHMLMA------SLSRPDTFTFTFTLKACERV--KALNKCQELHGFVIRSGYERCVV-VSTNLMRGYAANGVIEAARS 145 (551)
Q Consensus 75 l~~~m~~~------~~~~pd~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~ 145 (551)
...+|... .+. |....+..++....-. ..+.--.+++..-...-+.|+-. +...|+.-+.+ +.+++..
T Consensus 204 Y~kki~~~d~~~Y~k~~-peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 204 YLKKIHAFDQRPYEKFI-PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HHHHHHHHhhchHHhhC-cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 23333221 122 4444444444433221 12222233333333333455433 33445555544 3344333
Q ss_pred HhccC--------CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHH-------HHHHHH----hcCCh
Q 048830 146 VFDNM--------PERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC-------LLSSCA----HVGAL 206 (551)
Q Consensus 146 ~~~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-------ll~~~~----~~~~~ 206 (551)
+-+.+ .+.=+.++..++...++.++..+|-+.+.-+.-. .|+...-.- +-+..+ ...+.
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 33222 1234567888899999999999998888766542 343321111 111111 11122
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHHhcCC---CCHhHHHHHHH----HHHhc---CCh
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALV---DMYAKCGN-LDSAFCVFSRMRK---RDVLSWNSMIV----GYGVH---GRG 272 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li---~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~----~~~~~---g~~ 272 (551)
..-..+|+.+...++... ....-|+ .-+.+.|. -++|..+++.+.+ -|...-|.... .|.+. ...
T Consensus 359 r~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 233344444444333211 1112222 23445555 7888888887764 45544443322 23221 234
Q ss_pred HHHHHHHHHHHHcCCCCCHhh----HHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSIT----FLGLLC--GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t----~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 346 (551)
.+-+.+-+-..+.|+.|-.+. -+.|.. .+...|++.++.-+-..+. .+.|++.+|..++-.+....++++|
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHH
Confidence 444455555566788775443 233332 2445788988887766664 5889999999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHH
Q 048830 347 LEVINTSSPSDPVLWRT 363 (551)
Q Consensus 347 ~~~~~~~~~~~~~~~~~ 363 (551)
.+++.. +|.+..+|++
T Consensus 515 ~~~l~~-LP~n~~~~ds 530 (549)
T PF07079_consen 515 WEYLQK-LPPNERMRDS 530 (549)
T ss_pred HHHHHh-CCCchhhHHH
Confidence 999999 9886666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.04 E-value=4.8 Score=41.26 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRKR---DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG- 300 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~- 300 (551)
..+|+..++--.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|-.++....+-- .|+......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHH
Confidence 345556666666666776666666665543 12334444444444466666666665544432 2222222222222
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHH---HHHhhcCCC--CHHHHHHHH-----HHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKAL---EVINTSSPS--DPVLWRTLL-----GSCK 369 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~--~~~~~~~ll-----~~~~ 369 (551)
+-..|+.+.|..+++.+.+. . |+ +..-..-+....+.|..+.+. +++....+. +..+...+. --+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 34568999999999999775 3 64 333344566777889999888 666553333 444444333 2345
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCCh
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 408 (551)
..++.+.|..++.++.+..|.+...|..+.+.....+..
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 678999999999999999999999999999888777643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.076 Score=31.60 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
..|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457777888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.66 Score=46.94 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=76.7
Q ss_pred HHHhcCChHHHHHHHHHHH-HcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCH
Q 048830 265 GYGVHGRGDEAISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL 343 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 343 (551)
.....++++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3445666776665554111 11111 23355666667777777777766443322 23455677888
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 344 EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 344 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+.|.++.++ .+ +...|..|.......|+++.|+..|++. ..+..|.-.|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~-~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKE-LD-DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCC-CS-THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-cC-cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888777666 44 6778888888888888888888887763 346667777777777776666666655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.2 Score=44.39 Aligned_cols=99 Identities=8% Similarity=0.081 Sum_probs=71.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC------CHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS------DPVLWRTLLG 366 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~ 366 (551)
+=..+..++.+.|+.++|.+.+.+|.+.+...-...+...|+..|...+.+.++..++.+ -+. -...|++.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k-YdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK-YDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH-hccccCCchHHHHHHHHHH
Confidence 334567777889999999999999987643333455777899999999999999999877 442 3456666554
Q ss_pred HHHhcCc---------------HHHHHHHHHHHHhhcCCCc
Q 048830 367 SCKIHRN---------------VEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 367 ~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 392 (551)
-.+..++ -..|.+++.++.+.+|..|
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4443333 2346688899999888754
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.5 Score=38.75 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHhcC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 048830 239 GNLDSAFCVFSRMR--KR-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFH 315 (551)
Q Consensus 239 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 315 (551)
|-++-|+--|.... .| -+..||-+.--+...|+++.|.+.|+...+....-+ .+...-.-++--.|++..|.+=|.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHH
Confidence 34444444444332 23 345677777777788888888888887776532212 222222223445677777776665
Q ss_pred HhHHhcCCCCCccchhhhhH-HHhhcCCHHHHH-HHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC--
Q 048830 316 MMVSRYNLKPGIKHYGCLVD-LYGRAGKLEKAL-EVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-- 391 (551)
Q Consensus 316 ~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 391 (551)
..-+ -.|+.. |.+|-- .--..-++.+|. .+.++++..|...|..-+-.+.-.. .. .+.+++++.+...++
T Consensus 158 ~fYQ---~D~~DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgk-iS-~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 158 AFYQ---DDPNDP-FRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGK-IS-EETLMERLKADATDNTS 231 (297)
T ss_pred HHHh---cCCCCh-HHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhh-cc-HHHHHHHHHhhccchHH
Confidence 5533 233211 222211 112233556665 4455545557777777665543222 11 123444444433332
Q ss_pred -----cchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 392 -----AGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 392 -----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
..+|..|+.-|...|..++|..+|+.....+
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999876543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.73 E-value=5.9 Score=40.73 Aligned_cols=157 Identities=13% Similarity=0.039 Sum_probs=89.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChh------hHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHH
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF------TFTFTLKACER----VKALNKCQELHGFVIRSGYERCVVVS 127 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~------~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 127 (551)
.+++...=.|+-+.+++++.+..+.+-. -.+. .|..++..+.. ..+.+.+.+++..+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 3444555667777888877776553211 1111 23333333332 34667788888877765 3444433
Q ss_pred H-HHHHHHHhCCCHHHHHHHhccCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 048830 128 T-NLMRGYAANGVIEAARSVFDNMPE-------RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199 (551)
Q Consensus 128 ~-~li~~y~~~g~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 199 (551)
. .-...+...|++++|++.|+.... -....+--+.-.+.-..+|++|...|..+.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3 334566777888888888876443 112234445555677778888888888887643 2234455544444
Q ss_pred H-HhcCCh-------HHHHHHHHHHHH
Q 048830 200 C-AHVGAL-------NMGIFLHRIACE 218 (551)
Q Consensus 200 ~-~~~~~~-------~~a~~~~~~~~~ 218 (551)
| ...++. ++|..++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4 344555 666666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.23 Score=45.56 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcC---CC---CHHHHHHHHHHHHhcCcHHH
Q 048830 304 QGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSS---PS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
.|++..|.+.|...+++|.-.+ ....+--|...+...|++++|..+|..+. |. -+...--|.......|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555555544331111 12222334444444444444444443311 11 22333333444444555555
Q ss_pred HHHHHHHHHhhcCCCc
Q 048830 377 GEIAMKNLVQLEAASA 392 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~ 392 (551)
|...++++.+.-|..+
T Consensus 234 A~atl~qv~k~YP~t~ 249 (262)
T COG1729 234 ACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHCCCCH
Confidence 5555555555555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=3.1 Score=37.28 Aligned_cols=196 Identities=19% Similarity=0.115 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HhHHHHHHH-H
Q 048830 191 FTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD-VLSWNSMIV-G 265 (551)
Q Consensus 191 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~ 265 (551)
..+......+...+....+...+...... ........+..+...+...+++..+.+.+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344444444445555444444444331 1223344445555555555666666666665543 11 122222233 5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC----CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHP----DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA 340 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 340 (551)
+...|+.+.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7777888888888877754 233 2233334444456677888888888877642 222 356677777788888
Q ss_pred CCHHHHHHHHhhcCCC--C-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 341 GKLEKALEVINTSSPS--D-PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~--~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
++++.|...+..+... + ...+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888888888774544 2 345555555555677789999999999888876
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.12 Score=44.71 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=68.2
Q ss_pred HHhhcCCHHHHHHHHhhcCCC--------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 336 LYGRAGKLEKALEVINTSSPS--------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
-+.+.|++++|..-|..++.. -...|..-..++.+.+..+.|+....++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777777666654433 344555666778888999999999999999999888888888899999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 048830 408 EEGVARTRKLIKSNGI 423 (551)
Q Consensus 408 ~~~a~~~~~~m~~~g~ 423 (551)
+++|+.=++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999988876443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.2 Score=40.14 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=49.8
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHH---HHHHHHHHHHhcC
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPV---LWRTLLGSCKIHR 372 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~ll~~~~~~g 372 (551)
.+..|+++.|++.|.+.+. +-| ....||.-.++|.-+|+.++|++-++++++. ... .|..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4455666666666655542 222 4555666666666666666666655554443 111 2222335567778
Q ss_pred cHHHHHHHHHHHHhhcCC
Q 048830 373 NVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~ 390 (551)
+.+.|..-|+.+-+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888877777644
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.56 E-value=5.3 Score=39.46 Aligned_cols=409 Identities=11% Similarity=0.056 Sum_probs=224.6
Q ss_pred hhhhhHhhhhccC---CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChhHHHHHHH
Q 048830 4 KKHARYVGLNKAR---QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQ---TQAWNSLIRAFAQSLSPLQAIFYYN 77 (551)
Q Consensus 4 ~~~~~~~~~~~g~---~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~ 77 (551)
.+|+..+.++-.+ +.|+.+|-+||.-|... |..++-++++++|..|- ..+|.--|++-....+++....+|.
T Consensus 23 ~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq--~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 23 NIHGDELRLRERIKDNPTNILSYFQLIQYLETQ--ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred CCCchHHHHHHHhhcCchhHHHHHHHHHHHhhh--hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 4566665555554 35778999999999999 99999999999998764 4578888888888889999999999
Q ss_pred HHHHcCCCCCChhhHHHHHHHHhccCChHH------HHHHHHHHHH-hCCCCCh-hHHHHHHHHHH---hCC------CH
Q 048830 78 HMLMASLSRPDTFTFTFTLKACERVKALNK------CQELHGFVIR-SGYERCV-VVSTNLMRGYA---ANG------VI 140 (551)
Q Consensus 78 ~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~~~-~~~~~li~~y~---~~g------~~ 140 (551)
+.+... .+...|..-+.-.-+.+..-. .-+.|+..+. .++.|-. ..|+..+...- ..| ++
T Consensus 101 rCL~k~---l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqri 177 (660)
T COG5107 101 RCLKKS---LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRI 177 (660)
T ss_pred HHHhhh---ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHH
Confidence 988765 345555555554434332211 1233333333 3444433 34454444321 223 35
Q ss_pred HHHHHHhccCCC-C---------ChhHHHHHHHHHHh-------cCChHHHHHHHHHhhh--CCcc----cCHHHHHHHH
Q 048830 141 EAARSVFDNMPE-R---------DLVSWNSIISCYTQ-------ASFHLEALKLYERMRF--EDVG----LDGFTLVCLL 197 (551)
Q Consensus 141 ~~A~~~~~~m~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~~~~----p~~~t~~~ll 197 (551)
|..++.+.++.. | |-..|..=+.-... .--+-.|.+.+++... .|+. .+..|++.+-
T Consensus 178 d~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 178 DKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 556666766654 1 22222211111110 1123445555555532 2332 1222333211
Q ss_pred H-----------HHHhc-----CC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHH
Q 048830 198 S-----------SCAHV-----GA--LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSW 259 (551)
Q Consensus 198 ~-----------~~~~~-----~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 259 (551)
+ .=... ++ .+...-+|+++... +.....+|----.-+...++-+.|......-.+-.+..-
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~ 336 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLT 336 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchh
Confidence 1 00000 00 00111122222221 111222332222333455667777776665432111100
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH-----------------------------HcCCCCCHhhHHHHHHHHhccCCHHHH
Q 048830 260 NSMIVGYGVHGRGDEAISFFKQML-----------------------------MAGFHPDSITFLGLLCGCSHQGLVEEG 310 (551)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~-----------------------------~~g~~p~~~t~~~ll~~~~~~g~~~~a 310 (551)
--+-..|.-..+-++....|++.. -....--...|..++++-.+..-++.|
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 001111111222222222222111 000111223466677777777789999
Q ss_pred HHHHHHhHHhcC-CCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 311 VEYFHMMVSRYN-LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 311 ~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
..+|-++.+. + ..+++.++++++.-++ .|+...|..+|+-+|.. +...-+-.+..+..-++-+.|..+|+..++
T Consensus 417 R~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 417 RKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 9999999765 6 5678999999998665 68888999999987776 444455667777888899999999997765
Q ss_pred hcCC--CcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 387 LEAA--SAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 387 ~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.-.. -...|..++.--+.-|+...+..+-++|..
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4322 245677777777777877777666666543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.35 Score=45.38 Aligned_cols=157 Identities=10% Similarity=-0.023 Sum_probs=115.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhh----hhHHHhhcCCH
Q 048830 268 VHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC----LVDLYGRAGKL 343 (551)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~ 343 (551)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|.- +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478889999999998875 466778888888899999999999999998865 34566655543 34455689999
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC----CcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA----SAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
++|++.-+++++. |.-.-.++...+-..|+..++.++.++--..=.. -.-.|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999998887 6666667777888899999998887765432111 12345566777888899999999997
Q ss_pred HHHhCCCccCC
Q 048830 417 LIKSNGIKTTP 427 (551)
Q Consensus 417 ~m~~~g~~~~~ 427 (551)
.=.-....++.
T Consensus 272 ~ei~k~l~k~D 282 (491)
T KOG2610|consen 272 REIWKRLEKDD 282 (491)
T ss_pred HHHHHHhhccc
Confidence 54333344433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.36 Score=44.21 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=61.8
Q ss_pred HHHHHHHhcCC--CCChhhHHHHHHHHHcC-----CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC--------
Q 048830 39 SYAQLLFNQIQ--NPQTQAWNSLIRAFAQS-----LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK-------- 103 (551)
Q Consensus 39 ~~A~~lf~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~-------- 103 (551)
-..+..|...+ ++|-.+|-+++..+... +..+-.-..++.|.+.|+. .|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHHH
Confidence 33456666666 57777888877776544 3445555566777788887 78888888887664432
Q ss_pred --------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 104 --------ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 104 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
+-+-+..++++|...|+-||-.+-..|++++.+.+.
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 122345555666666666666555555555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.27 Score=45.09 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=73.5
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcC---CC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHH
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSS---PS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLA 399 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 399 (551)
.|+.-++. .+.|++.+|.+-|..-+ |. .+..+-=|..++...|+++.|...|..+.+..|.+ |.++.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 46788999998887633 33 33344448899999999999999999999987664 67899999
Q ss_pred HHhhhcCChhHHHHHHHHHHhC
Q 048830 400 TIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.+..+.|+.++|..++++..++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.44 Score=40.35 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=43.0
Q ss_pred HHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 048830 62 AFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141 (551)
Q Consensus 62 ~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 141 (551)
.+-+.|++++|..+|+-+...++ -|..-+..|..++-..+++++|...|......+ ..|+...-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 34455666666666665555443 233334444444445555666666555554433 223333333445555555555
Q ss_pred HHHHHhccC
Q 048830 142 AARSVFDNM 150 (551)
Q Consensus 142 ~A~~~~~~m 150 (551)
.|+..|+..
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.3 Score=41.73 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=106.0
Q ss_pred HhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHhccCCHH
Q 048830 236 AKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF----LGLLCGCSHQGLVE 308 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~ 308 (551)
.-.|+.-+|-..++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777888878888775 47888888888999999999999999988764 24444322 23334556789999
Q ss_pred HHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHHHHhcCcHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
+|++.-++.. .+.| |.-.-.++...+--.|+..++.++..+ -+. ....|.. .-.+...+.++.|+
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~-ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~al 267 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYK-TEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKAL 267 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHh-cccchhhhhHHHhhhhHHH-HHhhhcccchhHHH
Confidence 9999888775 4445 444455677777889999999999877 443 1112222 22345568999999
Q ss_pred HHHHHHHh--hcCCCcc
Q 048830 379 IAMKNLVQ--LEAASAG 393 (551)
Q Consensus 379 ~~~~~~~~--~~p~~~~ 393 (551)
++|++-+- ++.++..
T Consensus 268 eIyD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHHHhhccchh
Confidence 99987653 4566653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.04 E-value=4.5 Score=36.61 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=39.7
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC-------CH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhh----cCCCcchHHH
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS-------DP---VLWRTLLGSCKIHRNVEIGEIAMKNLVQL----EAASAGDYVL 397 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 397 (551)
.....|.+..++++|-..|.+ -.. -. ..+-+.+-.+.-..|+..|+..++.-.+. .|++..+...
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lK-e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLK-EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHH-hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334455555666666555544 111 01 11233333444445666666666665443 2445555556
Q ss_pred HHHHhhhcCChhHHHHH
Q 048830 398 LATIYACTKDEEGVART 414 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~ 414 (551)
|+.+|- .|+.+++.++
T Consensus 234 LL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHhc-cCCHHHHHHH
Confidence 665553 4555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.2 Score=37.50 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCC--hhHHHHHHHHHHhcC
Q 048830 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERD--LVSWNSIISCYTQAS 169 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g 169 (551)
|.....+|-...++++|...+.+..+- .+.+...|.+ ...++.|.-+.++|..-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444555556666666655444431 2333322221 122334444444443321 223445555566666
Q ss_pred ChHHHHHHHHH
Q 048830 170 FHLEALKLYER 180 (551)
Q Consensus 170 ~~~~A~~~~~~ 180 (551)
.++.|-..+++
T Consensus 106 spdtAAmaleK 116 (308)
T KOG1585|consen 106 SPDTAAMALEK 116 (308)
T ss_pred CcchHHHHHHH
Confidence 66555554444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.93 E-value=3.2 Score=34.52 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 048830 92 FTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 137 (551)
...++..+...+.......+++.+.+.+ ..++...+.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3445555555556666666666666554 34555666666666654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.91 E-value=19 Score=43.39 Aligned_cols=309 Identities=15% Similarity=0.025 Sum_probs=161.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHhcc-CCCCChhHHHHHHHHHHhcCCh
Q 048830 95 TLKACERVKALNKCQELHGFVIRSGY--ERCVVVSTNLMRGYAANGVIEAARSVFDN-MPERDLVSWNSIISCYTQASFH 171 (551)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~ 171 (551)
+..+--+.+.+.+|...++.-..... ......+-.+...|+.-++.|...-+... ...++. ...|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccH
Confidence 33445566677777777666210000 11222344455578888887776666552 333332 2344456677888
Q ss_pred HHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCCHHHHHHHHHh
Q 048830 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL-VDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 172 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~~~~ 250 (551)
..|...|+.+.+.+ ++...+++-++......+.++...-..+-.... ..+....++++ +.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 88888888887653 233567777776666666666555533333322 22233333333 444567777777776665
Q ss_pred cCCCCHhHHHHH-H-HHHHhc--CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH----------
Q 048830 251 MRKRDVLSWNSM-I-VGYGVH--GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM---------- 316 (551)
Q Consensus 251 ~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~---------- 316 (551)
..+..+|.+. + ..+.+. .+.-.-.+..+.+.+.-+.| +.+|+..|.+..+.++.-.
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5556666655 2 222221 12111223333333321111 1122222221111111111
Q ss_pred hHHhcCCCCCccc------hhhh---hHHHhhcCCHHHHH--HHHhhcCC-C----CHHHHHHHHHHHHhcCcHHHHHHH
Q 048830 317 MVSRYNLKPGIKH------YGCL---VDLYGRAGKLEKAL--EVINTSSP-S----DPVLWRTLLGSCKIHRNVEIGEIA 380 (551)
Q Consensus 317 ~~~~~~~~p~~~~------~~~l---i~~~~~~g~~~~A~--~~~~~~~~-~----~~~~~~~ll~~~~~~g~~~~a~~~ 380 (551)
.....+..++..+ |..- .+-+.+....--|. .++..-|. . -..+|-.....++..|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111123332111 1111 11122211111111 01111122 1 567888999999999999999998
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 381 MKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.-++.+.. -|..+...+......|+...|..++++..+.
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88887766 4678899999999999999999999877643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=5.5 Score=36.45 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=99.6
Q ss_pred HHhcCCHHHHHHHHHhcCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCH--hhHHHHHHHHhcc-
Q 048830 235 YAKCGNLDSAFCVFSRMRKRD------VLSWNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDS--ITFLGLLCGCSHQ- 304 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~~~~~~- 304 (551)
-.+.|++++|.+.|+.+.... ..+--.++-++-+.+++++|+..+++.... +-.||. ..|...+..+...
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 346688888888888876431 233444566777888888888888887764 223333 2333333322221
Q ss_pred ---CCH---HHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHH--HHHHHHHHHhcCcHHH
Q 048830 305 ---GLV---EEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVL--WRTLLGSCKIHRNVEI 376 (551)
Q Consensus 305 ---g~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~ 376 (551)
.+. ..|..-|+.++.++ |+. .-..+|...+.. +. |... =......|.+.|.+..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~-~~-d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVK-LN-DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHH-HH-HHHHHHHHHHHHHHHHhcChHH
Confidence 222 33444444444432 221 111122221111 10 1111 1244577899999999
Q ss_pred HHHHHHHHHhhcCCCc---chHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 377 GEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|..-++.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999999866643 4566788899999999999988776654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.2 Score=36.78 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=67.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGF--HPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR 339 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 339 (551)
-.....+.|++++|.+.|+.+...-. +-....-..|+.++.+.+++++|...+++.++.+.-.|+ ..|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34445677888888888888776411 122345566777888888888888888888765444443 234444444433
Q ss_pred cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 340 AGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
-...+.. +.. +...=+-.+....|...|+++++.-|+++
T Consensus 95 ~~~~~~~---~~~-----------~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEGS---LQS-----------FFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhhH---Hhh-----------hcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2222211 111 11111122345678888888888888864
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.41 E-value=4 Score=33.94 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=18.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH 303 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 303 (551)
++..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444445555555444443 2333344444444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.21 E-value=13 Score=39.42 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhh
Q 048830 159 NSIISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 159 ~~li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
..|+.-|...+++..|+.++-..++
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 3477788888888888888866653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.48 Score=44.17 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..++..++..+...|+.+.+...+++++..+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 346667788888889999999999999999999999999999999999999999999887764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.98 E-value=7.2 Score=35.72 Aligned_cols=136 Identities=17% Similarity=0.141 Sum_probs=89.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHh
Q 048830 261 SMIVGYGVHGRGDEAISFFKQMLMAG--FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338 (551)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 338 (551)
.-+..-.+.|++++|...|+.+...- -+-...+...++.++-+.++++.|....++..+.++-.||+. |...+.++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH
Confidence 33455668899999999999998642 122346677778888899999999999999988877777752 334444443
Q ss_pred hcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc-----------------chHHHH
Q 048830 339 RAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA-----------------GDYVLL 398 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~~l 398 (551)
.|.. ++. |.. -...|...++.+++.-|++. .-=..+
T Consensus 118 ----------~~~~-i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 118 ----------YFFQ-IDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred ----------Hhcc-CCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 1222 221 211 12234444444444455532 223467
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++.|.+.|.|..|..-++.|.+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 88899999999999999999875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.34 E-value=5.2 Score=32.49 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 048830 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222 (551)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 222 (551)
..+.-+..+.+.|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455566777788888888888777653 3677777778888888888888888888888777753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.34 E-value=18 Score=38.79 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=38.4
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
-++..+....+.+.+..+.+. ... ++..|-.++..+...+..+.-.+...++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~-~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCER-LGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHH-hCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 345556667777777777777 555 888888888888888876666655555553
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.34 E-value=8.2 Score=35.46 Aligned_cols=182 Identities=13% Similarity=0.052 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHhcCC--C-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHhhHHHHHHHHhccCC
Q 048830 239 GNLDSAFCVFSRMRK--R-----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---GF--HPDSITFLGLLCGCSHQGL 306 (551)
Q Consensus 239 g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~g~ 306 (551)
.++++|..-|+++.+ + ...+.-.||..+.+.|++++.++.|++|.-- .+ .-...+.++++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666666542 1 2234445677777777777777777776531 11 1233456666666665655
Q ss_pred HHHHHHHHHHhHHhc----CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----------------CHHHHHHHHH
Q 048830 307 VEEGVEYFHMMVSRY----NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----------------DPVLWRTLLG 366 (551)
Q Consensus 307 ~~~a~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~ll~ 366 (551)
.+.-..+++.-++.. +-..--.+-+.|...|...|.+.+..+++.+ +.. -..+|..=+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq-Lh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ-LHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH-HHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555555433321 1122234556677888877777777777765 321 2345666667
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCC--CcchH----HHHHHHhhhcCChhHHHHH-HHHHHhC
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAA--SAGDY----VLLATIYACTKDEEGVART-RKLIKSN 421 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~----~~l~~~~~~~g~~~~a~~~-~~~m~~~ 421 (551)
.|....+-..-..+|++++..... .|... .+=+.++.+.|+|++|..- |+..+..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 788888888888889988876522 22222 1334567788889988764 4444433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.34 Score=28.74 Aligned_cols=32 Identities=9% Similarity=-0.019 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.+|..+...+...|++++|...|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677778888888888888888888888874
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.99 E-value=16 Score=40.87 Aligned_cols=137 Identities=13% Similarity=0.064 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHH
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 310 (551)
.++.--+.|.+.+|..++..=.+.--..|.+...-+.+...+++|.-.|+..-+. --.+.+|...|++.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHH
Confidence 3333445555666655554322222344555555566677778877777654321 1346778888999999
Q ss_pred HHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHHHHhcCcHHHHH
Q 048830 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
..+..++.. +-.--..+-..|+.-+..+++.-+|-++..+.... +...|.-.+..+...++-+.-+
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~ie 1059 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIE 1059 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHH
Confidence 988877632 11111223356777888888888888887774443 3344444444444444333333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.38 Score=29.16 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 361 WRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 361 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
|..|...|...|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666666666666443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.85 E-value=19 Score=38.57 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=42.7
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---c
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMG-FVESVYVGNALVDMYAK---C 238 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~---~ 238 (551)
..+.-.|+++.|++++-. ..+...|.+++...+.-+.-..-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345568999999999876 3445677888877776654333222211 2222211 11122456778888876 4
Q ss_pred CCHHHHHHHHHhcCC
Q 048830 239 GNLDSAFCVFSRMRK 253 (551)
Q Consensus 239 g~~~~A~~~~~~~~~ 253 (551)
.+..+|.++|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 577888888776653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.83 E-value=12 Score=35.51 Aligned_cols=27 Identities=15% Similarity=-0.039 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
.++-.-+..+.+.++.+.+.+.+.+|.
T Consensus 122 ~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 122 EVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 333333444444556666666665554
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.66 E-value=5.6 Score=37.94 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 273 DEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGL--VEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
+.+..+|+.+...|+..+. .....++..+..... +.++..+++.+.+. ++++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 4556677777776665543 223333332222222 34677777777554 777777776655433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.33 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=22.3
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 394 DYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.7 Score=40.05 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--CC----CHHHHHHHhccCCC-------CChhHHHHHHHHHHhcCC--
Q 048830 106 NKCQELHGFVIRSGYERCVVVSTNLMRGYAA--NG----VIEAARSVFDNMPE-------RDLVSWNSIISCYTQASF-- 170 (551)
Q Consensus 106 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~-- 170 (551)
++...+++.+.+.|+..+..+|-+..-.... .. ....|..+|+.|.+ ++-.++..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3344555666666665555544442222222 11 23455566666653 233344444433 2222
Q ss_pred --hHHHHHHHHHhhhCCcccCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 171 --HLEALKLYERMRFEDVGLDGF--TLVCLLSSCAHVGA--LNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 171 --~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
.+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 244566677777666654322 33333333322222 3466677777778887777666665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=16 Score=34.59 Aligned_cols=241 Identities=7% Similarity=-0.054 Sum_probs=147.2
Q ss_pred HHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh----HHHHHHHHHHHHh
Q 048830 43 LLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKAL----NKCQELHGFVIRS 118 (551)
Q Consensus 43 ~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~ 118 (551)
.+++.+..+|....-..+..+...|. .++...+..+... +|...-...+.++...|+. +++...+..+...
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 44455567788787778888877775 4555555555543 5555555667777777763 4566666655332
Q ss_pred CCCCChhHHHHHHHHHHhCCCH-----HHHHHHhcc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHH
Q 048830 119 GYERCVVVSTNLMRGYAANGVI-----EAARSVFDN-MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFT 192 (551)
Q Consensus 119 g~~~~~~~~~~li~~y~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 192 (551)
.++..+....+.++...+.- ..+...+.. +..++..+--..+.++.+.++ .+++..+-.+.+ .+|...
T Consensus 102 --D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~V 175 (280)
T PRK09687 102 --DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDV 175 (280)
T ss_pred --CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHH
Confidence 56777777777777665421 233444433 334566666677777777776 567777777765 355555
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC
Q 048830 193 LVCLLSSCAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271 (551)
Q Consensus 193 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (551)
-...+.++...+ ....+...+..+.. .++..+-...+.++++.|+......+.+.+..+++ .-..+.++...|.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~ 250 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCC
Confidence 555566666543 13345555544443 45777777788888888885544444455444442 3456677777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
. +|+..+..+... .||...-...+.+|.
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 5 677777777763 346655555555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.44 E-value=9.3 Score=33.43 Aligned_cols=112 Identities=9% Similarity=0.041 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhh-----hhHHHhhcCCHHHH
Q 048830 274 EAISFFKQMLMAGFHPDSITFL--GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC-----LVDLYGRAGKLEKA 346 (551)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 346 (551)
+.....+++....-.....++. .+...+...+++++|...++..... |.-..+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444555555432122222222 3345677788888888888776532 32223333 44566778999999
Q ss_pred HHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 347 LEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 347 ~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+..++. ... ....-..-...+...|+.++|...|++.++.++.
T Consensus 146 L~~L~t-~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDT-IKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhc-cccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 998888 443 2333333447788899999999999999888744
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.93 Score=28.90 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=18.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHcC
Q 048830 55 AWNSLIRAFAQSLSPLQAIFYYNHMLMAS 83 (551)
Q Consensus 55 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 83 (551)
+|..+...|.+.|++++|.++|++.++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.18 E-value=16 Score=34.22 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=74.7
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----HhHHHHHHHHHHhcCChHH
Q 048830 199 SCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD----VLSWNSMIVGYGVHGRGDE 274 (551)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 274 (551)
.....++..++..++..+...... +...--.|..+|...|+.+.|..++..++... .....+-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345677888888888877775422 35566678888889999999999998887421 1111122333333333333
Q ss_pred HHHHHHHHHHcCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcC
Q 048830 275 AISFFKQMLMAGFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341 (551)
Q Consensus 275 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 341 (551)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++..-.-|...-..|++.+.-.|
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333322 34 3344445555566666666666555544443222223333344444443333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.95 E-value=24 Score=35.75 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=64.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH--H
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGY--A 135 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y--~ 135 (551)
.+|.-.-+..+++.-+++-.+.++.. ||-.+.-.++ +--....+.++++++.+.++.|-. .+-... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~---pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~lg~s~~~~ 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN---PDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------SLGKSQFLQ 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh---hhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------hhchhhhhh
Confidence 34444455666666666666666544 4443322222 222344577778887777765410 000000 0
Q ss_pred hCCCHHHHHHHhccCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcc-cCHHHHHHHHHHHHhcCChHHHH
Q 048830 136 ANGVIEAARSVFDNMPERD----LVSWNSIISCYTQASFHLEALKLYERMRFEDVG-LDGFTLVCLLSSCAHVGALNMGI 210 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~ 210 (551)
..|.. ++....++ ..+-..+..+.-+.|+.++|++.|++|.+.... -.......++.++...+...++.
T Consensus 242 ~~g~~------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 242 HHGHF------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred cccch------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 01111 11111122 122233455555667777777777776543211 11223344555555555555555
Q ss_pred HHHHHH
Q 048830 211 FLHRIA 216 (551)
Q Consensus 211 ~~~~~~ 216 (551)
.++.+-
T Consensus 316 ~lL~kY 321 (539)
T PF04184_consen 316 ALLAKY 321 (539)
T ss_pred HHHHHh
Confidence 555443
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.94 E-value=17 Score=34.09 Aligned_cols=51 Identities=24% Similarity=0.059 Sum_probs=24.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
....|+..+|..+|+...... +-+...-..+..+|...|+++.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 444555555555555555431 111233334445555555555555555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.94 E-value=1.3 Score=41.75 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=56.1
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVE 375 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~ 375 (551)
-|.++|.+++|+..|.... ...| +..++..-..+|.+..++..|+.-.+.++.. -...|.--+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3555666666666665543 3344 5555555566666666666555544443333 2334555555556677888
Q ss_pred HHHHHHHHHHhhcCCCcc
Q 048830 376 IGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~~ 393 (551)
+|.+-++.+++++|++..
T Consensus 183 EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhHHHHHhhCcccHH
Confidence 899999999999998643
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.8 Score=37.24 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC-----------hhHHHHHHHHHHh
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD-----------EEGVARTRKLIKS 420 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 420 (551)
+++|..-|++++.++|+...++..++++|...+. +++|...|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 3457888888899999999999999999988865 4555555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.14 E-value=27 Score=35.35 Aligned_cols=94 Identities=18% Similarity=0.132 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
|....-+++..+..+-.+.-+..+..+|..-| -+...|..++.+|... ..++-..+++.+++..+. |+....-|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44555667777878777888888888887754 4667777888888777 566677778877776543 4444455555
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 048830 234 MYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~ 252 (551)
.|-+ ++.+.+...|.++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHH-hchhhHHHHHHHHH
Confidence 5555 77777777777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.71 E-value=4.1 Score=34.78 Aligned_cols=138 Identities=7% Similarity=-0.033 Sum_probs=88.5
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-HHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVV-VSTN 129 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ 129 (551)
.....|..-+. +++.+..++|+.-|..+...|...--......+....+..|+...|...|+++-+....|-+. -..-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 44555665555 467788899999999998877530111111222334567789999999999887654344332 1111
Q ss_pred --HHHHHHhCCCHHHHHHHhccCCCC-C---hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC
Q 048830 130 --LMRGYAANGVIEAARSVFDNMPER-D---LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189 (551)
Q Consensus 130 --li~~y~~~g~~~~A~~~~~~m~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 189 (551)
-...+...|.++......+.+..+ + ...-.+|.-+-.+.|++.+|.+.|..+......|.
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 122356788899888888777542 2 23455677777889999999999998876444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.88 Score=42.94 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=70.9
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
.+-|.++|.+++|++-|.++|.. |++++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45688999999999999997866 899999999999999999999999999998886666677777777777777777
Q ss_pred HHHHHHHHH
Q 048830 411 VARTRKLIK 419 (551)
Q Consensus 411 a~~~~~~m~ 419 (551)
|.+-.+...
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 766555443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.52 E-value=7.1 Score=29.91 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666665554321 22222233456778899999999999999999999988765 3677778888888888777
Q ss_pred CCCCCHhhHH
Q 048830 286 GFHPDSITFL 295 (551)
Q Consensus 286 g~~p~~~t~~ 295 (551)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 56555554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.45 E-value=2.4 Score=39.73 Aligned_cols=45 Identities=18% Similarity=-0.011 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhcc
Q 048830 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
.+++..++..-+..|+-||.++++.+++.+.+.+++.+|.++.-.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 334444444444444445555555555555555554444444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.38 E-value=22 Score=34.87 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC----CCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA----ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...+|..+...+++.|+++.|...+.++...++ ..|.....-+......|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677899999999999999999999999988652 2467778889999999999999998887765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.31 E-value=2.3 Score=35.93 Aligned_cols=64 Identities=9% Similarity=-0.011 Sum_probs=49.1
Q ss_pred HHHHHHHH---HHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 359 VLWRTLLG---SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 359 ~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
.+.+.|+. .-...++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|..+++.+.+..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 34444443 33456788888888888888888888888888888888888888888888876654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.08 E-value=7 Score=34.10 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHh
Q 048830 127 STNLMRGYAANGVIEAARSVFDNMPERD------LVSWNSIISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 127 ~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 181 (551)
+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4445555555555555555555544321 112333444444444444444444333
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.65 E-value=11 Score=38.81 Aligned_cols=133 Identities=17% Similarity=0.041 Sum_probs=89.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCC
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASF 170 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 170 (551)
.-+.+...+.++|-.++|+++ .+|+.- -.....+.|+++.|.++..+. .+..-|..|..+..+.|+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhccc
Confidence 344555566666666666554 333322 233456788999988876554 356779999999999999
Q ss_pred hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 171 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
+..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.-..+|...|+++++.+++.+
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 9999999877654 456666777777777666666666665522 3334456777888888888766
Q ss_pred cC
Q 048830 251 MR 252 (551)
Q Consensus 251 ~~ 252 (551)
-.
T Consensus 747 t~ 748 (794)
T KOG0276|consen 747 TQ 748 (794)
T ss_pred cC
Confidence 43
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.63 E-value=5.4 Score=37.39 Aligned_cols=76 Identities=8% Similarity=-0.075 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCChhHHHHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR-----SGYERCVVVSTNL 130 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~~~l 130 (551)
+..++..+...|+++.+.+.++++....+ -|...|..++.+|.+.|+...|+..|..+.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455666666777777777777766655 4666677777777777777777776666654 4566665555444
Q ss_pred HHH
Q 048830 131 MRG 133 (551)
Q Consensus 131 i~~ 133 (551)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.52 E-value=7.5 Score=33.24 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 048830 231 LVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~ 251 (551)
|.-+-.+.|++.+|.+.|..+
T Consensus 173 LglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HhHHHHhccchHHHHHHHHHH
Confidence 333334444444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.37 E-value=6.3 Score=34.53 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=39.7
Q ss_pred HHHhhcCCHHHHHHHHhhcCCCCHHHHHHHH---HHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLL---GSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
-++.+.+.++.|++--.+++..++..-.+|. .+|-+...++.|+.-|+++++.+|....+-
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 3455566666666655555555444334443 467777889999999999999998765433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.12 E-value=0.37 Score=45.48 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=72.0
Q ss_pred hcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHH
Q 048830 339 RAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
..|.+++|++.|..+++. ....|..-.+++.+.+....|++-+..+++++|+....|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 457788888888877776 55566666677888888888999999999999998888888888888899999999999
Q ss_pred HHHHhCCCccC
Q 048830 416 KLIKSNGIKTT 426 (551)
Q Consensus 416 ~~m~~~g~~~~ 426 (551)
....+.++...
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88888777654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.00 E-value=27 Score=32.74 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+.+....+|...|.+.+|..+.++++.++|-+...+-.|.+.++..|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444455789999999999999999999999999999999999999999888888887774
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.75 E-value=29 Score=32.88 Aligned_cols=154 Identities=11% Similarity=0.045 Sum_probs=78.5
Q ss_pred CChHHHHHHHhcCCC------CCh------hhHHHHHHHHHcCCChhHHHHHHHHHHHc----C---CCCCCh-----hh
Q 048830 36 SSLSYAQLLFNQIQN------PQT------QAWNSLIRAFAQSLSPLQAIFYYNHMLMA----S---LSRPDT-----FT 91 (551)
Q Consensus 36 g~~~~A~~lf~~~~~------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~---~~~pd~-----~~ 91 (551)
|+++.|..++.+... |+. ..||.-.+.+.+..+++.|...+++..+. + ...|+. .+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 888888888876542 222 23555555554444777777766665432 1 111333 23
Q ss_pred HHHHHHHHhccCChH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCC---ChhHHHHHHHHH
Q 048830 92 FTFTLKACERVKALN---KCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER---DLVSWNSIISCY 165 (551)
Q Consensus 92 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~ 165 (551)
+..++.++...+..+ +|..+++.+... ++..+.++-.-+..+.+.++.+++.+.+.+|... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 445556666555543 344455445332 2333444544556666667777777777666531 223444444443
Q ss_pred Hh--cCChHHHHHHHHHhhhCCcccCH
Q 048830 166 TQ--ASFHLEALKLYERMRFEDVGLDG 190 (551)
Q Consensus 166 ~~--~g~~~~A~~~~~~m~~~~~~p~~ 190 (551)
.. ......|...+..+....+.|..
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 11 12334555555555444444443
|
It is also involved in sporulation []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.72 E-value=49 Score=35.49 Aligned_cols=194 Identities=10% Similarity=-0.008 Sum_probs=104.7
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHH-cCCChhHHHHHHHHHHHcCCCCCChh-----
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFA-QSLSPLQAIFYYNHMLMASLSRPDTF----- 90 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~~~~~pd~~----- 90 (551)
+.+..-|..||.+-.+| ++.+.+=+.--+..+..++-.+...+. ...+++.|...+++.....-. ++-.
T Consensus 27 ~~~l~~Y~kLI~~ai~C----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~ 101 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFR 101 (608)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHH
Confidence 45666788888887777 333333111111224455566666665 667888999888877544322 2222
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC----CCCChhHHHHH-HHHHHhCCCHHHHHHHhccCCC-----CC--hhHH
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSG----YERCVVVSTNL-MRGYAANGVIEAARSVFDNMPE-----RD--LVSW 158 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l-i~~y~~~g~~~~A~~~~~~m~~-----~~--~~~~ 158 (551)
.-..++..+.+.+... |....++.++.- ..+-...+.-+ +..+...++...|.+.++.+.. .| +..+
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 1223455555555544 888877766532 11222333333 3333344788888888876643 22 2233
Q ss_pred HHHHHHHH--hcCChHHHHHHHHHhhhCC---------cccCHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 048830 159 NSIISCYT--QASFHLEALKLYERMRFED---------VGLDGFTLVCLLSSCA--HVGALNMGIFLHRIA 216 (551)
Q Consensus 159 ~~li~~~~--~~g~~~~A~~~~~~m~~~~---------~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 216 (551)
-.++.+.. +.+.++++++..+++.... -.|-..++..++..++ ..|+++.+.....++
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333 4466677777777663221 1234556666666664 456665666554444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.61 E-value=8.4 Score=36.28 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=72.0
Q ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC-C--------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCccc
Q 048830 118 SGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE-R--------DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGL 188 (551)
Q Consensus 118 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 188 (551)
.|.+....+...++..-....+++.++..+-++.. | ...+|-.++. .-++++++.++..=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 45555666666777777777888888877766543 1 2333333333 337788888888888889999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 048830 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMG 220 (551)
Q Consensus 189 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 220 (551)
|.+|+..+|..+.+.++...|.++...++...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887776653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.59 E-value=2.9 Score=34.77 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=48.9
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 3789999999999999999999999999999999999999999999998776543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.39 E-value=1.4 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=16.2
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHH
Q 048830 121 ERCVVVSTNLMRGYAANGVIEAAR 144 (551)
Q Consensus 121 ~~~~~~~~~li~~y~~~g~~~~A~ 144 (551)
+.++..|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666777777777777777664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.37 E-value=1.8 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.27 E-value=1.9 Score=24.99 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=17.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 363 TLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 363 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.+..++...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555666666666666666666665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.20 E-value=21 Score=30.69 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--CHHHHHHHhccCC
Q 048830 74 FYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG--VIEAARSVFDNMP 151 (551)
Q Consensus 74 ~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~ 151 (551)
+.++.+.+.++. |+...+..+++.+.+.|.+..-.++ +..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 15 EYirSl~~~~i~-~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQHNIP-VQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 445555566776 7777888888888887776554433 44444455443333332222111 1334455555543
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 152 ERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++....+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888887765322 112223455565566665555555555444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.79 E-value=8.4 Score=33.62 Aligned_cols=63 Identities=10% Similarity=-0.025 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHH
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDT--FTFTFTLKACERVKALNKCQELHGFVIR 117 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (551)
..+..+...|.+.|+.+.|++.|.++...... |.. ..+..+++.+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35667777788888888888888887765443 332 2455666777777777777777666654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.3 Score=25.96 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=24.3
Q ss_pred chHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 393 GDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.45 E-value=1.2 Score=37.26 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 048830 190 GFTLVCLLSSCAH 202 (551)
Q Consensus 190 ~~t~~~ll~~~~~ 202 (551)
...|..++..|..
T Consensus 125 ~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 125 PELWEQLLKYCLD 137 (143)
T ss_dssp SHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.35 E-value=41 Score=33.35 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=116.9
Q ss_pred cCCHHHHHHHHHhcCC----CCHhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHhccCCHH
Q 048830 238 CGNLDSAFCVFSRMRK----RDVLSWNSMIVG-YGVHGRGDEAISFFKQMLMAGFHPDS----ITFLGLLCGCSHQGLVE 308 (551)
Q Consensus 238 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~ 308 (551)
.|+.++|.+.+..+.. +....+-+|+.+ .....++.+|+++|+...-. .|-. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888763 345567777665 44556789999999987653 3433 33444455667889999
Q ss_pred HHHHHHHHhHHhcCCCCCccchh-hhhHHHhh---cCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHH
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYG-CLVDLYGR---AGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMK 382 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~ 382 (551)
++..+-.....+|.-.|-...|. .++..+.+ ....+.-.+++.. |+. -..+|-.+...-...|+.+.|....+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 98888777777777667543332 33333333 3345555666777 666 66788888888999999999999999
Q ss_pred HHHhhcCCCcchHHHHHHHh-----hhcCChhHHHHHHHHHHh
Q 048830 383 NLVQLEAASAGDYVLLATIY-----ACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 383 ~~~~~~p~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m~~ 420 (551)
++..+... ...-...+..| .-..+++++.+.+..+..
T Consensus 282 ~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 282 RALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 99998633 22222222222 223456666666655433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.29 E-value=22 Score=30.17 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=8.0
Q ss_pred HHhCCCHHHHHHHhccCC
Q 048830 134 YAANGVIEAARSVFDNMP 151 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~ 151 (551)
+.+.|++++|+++|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 344444444444444443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.22 E-value=1.1 Score=24.79 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=17.4
Q ss_pred chHHHHHHHhhhcCChhHHHHHHH
Q 048830 393 GDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677778888888888877664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.06 E-value=29 Score=31.40 Aligned_cols=27 Identities=0% Similarity=-0.257 Sum_probs=16.4
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
...+++.+|..+|+++.....+++-.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 445666667777766666666655443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.51 E-value=16 Score=28.03 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 048830 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFE 184 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 184 (551)
.++|.-+-+.+...+-. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+..|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666665544311 22222333456788999999999999999999999987765 4677777777777777666
Q ss_pred CcccCHHHHHH
Q 048830 185 DVGLDGFTLVC 195 (551)
Q Consensus 185 ~~~p~~~t~~~ 195 (551)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 5 555555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.41 E-value=0.75 Score=38.54 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=61.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHH
Q 048830 94 FTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLE 173 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 173 (551)
.+++.+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888888888888888776666788889999999999888888888874433 223456666777777777
Q ss_pred HHHHHHHh
Q 048830 174 ALKLYERM 181 (551)
Q Consensus 174 A~~~~~~m 181 (551)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77776655
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.36 E-value=9.1 Score=35.88 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
..+.|-.+|.+.++++.|..+.+.++.+.|++|.-+.--+-+|.+.|.+..|..=++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999998876654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.94 E-value=25 Score=31.44 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhh
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLV 334 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 334 (551)
.+..++.+.+.+..++|+...++-++.. +.|..+-..++..++-.|++++|..-++... .+.|+ ...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3455667778888888888887777652 3445566677788888899998888777663 34443 34455444
Q ss_pred HHHhhcCCHHHHH-HHHhh-cCCC----CHHHHHHHHH-H--HHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 335 DLYGRAGKLEKAL-EVINT-SSPS----DPVLWRTLLG-S--CKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 335 ~~~~~~g~~~~A~-~~~~~-~~~~----~~~~~~~ll~-~--~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
.+ +.++ ++|.- ..|. ....|-..+. + |...|..+.+..+-++.++..|..+
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 43 2232 33432 1222 4556665553 3 3334456666667777777766643
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.67 E-value=3.3 Score=42.17 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=66.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
-.|+...|...+..+. ...| .-.....|.+.+.+.|...+|..++.+++.. .+.++.++.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3566777777766654 3444 2334455666777777777777777664544 667777777888888888888
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
++.+++++.+.|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888887776665544433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.54 E-value=2.2 Score=23.91 Aligned_cols=30 Identities=7% Similarity=-0.049 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcC
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 389 (551)
.|..+...+...++++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555556666665555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.18 E-value=3.5 Score=27.58 Aligned_cols=34 Identities=12% Similarity=-0.049 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
-.+.-++.+.|+++.|....+.+++.+|+|..+-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3466788999999999999999999999986543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.16 E-value=29 Score=29.82 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=73.9
Q ss_pred HHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 048830 175 LKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR 254 (551)
Q Consensus 175 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 254 (551)
+++.+.+.+.+++|+...+..+++.+.+.|....-.++ +..++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34555666777888888888888888888876554443 344444444333333222221 222233333333322
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
=-..+..++..+...|++-+|+.+.+..... +...-..++.+-.+.++...=..+|+-..
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234556677788888888888888765322 22222445666666666555444444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.92 E-value=17 Score=36.33 Aligned_cols=129 Identities=11% Similarity=0.024 Sum_probs=76.9
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHH
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~ 378 (551)
..|++-.|-+-+...+..+.-.|+.... ........|+++.+...+.. ... ...+...++......|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~-~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISD-VEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhc-hhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456555544444444443444443322 23334566778887777755 322 5666777777777888888888
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECC
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGN 436 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 436 (551)
...+.++..+-+++.....-+..--..|-++++.-.|++....+.+. ..-|+..-.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~--~~g~v~~~~ 433 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET--QSGWVNFLS 433 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh--cccceeeec
Confidence 88888887766666555444444455577788888888776543333 333554433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.88 E-value=3.2 Score=25.59 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444455555555555555554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.83 E-value=2.6 Score=37.29 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHH---HHHHHHHHHHhcCcHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPV---LWRTLLGSCKIHRNVE 375 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~ 375 (551)
.|-..|....|+.=|.+.. .+.|+ +.+||-|.--+...|+++.|.+.|+..++.|+. +...-.-++.-.|+++
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 3555666666666666554 45664 456777777777777777777777775554222 2222222344467777
Q ss_pred HHHHHHHHHHhhcCCCc
Q 048830 376 IGEIAMKNLVQLEAASA 392 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~ 392 (551)
.|.+-+.+.-+.+|+||
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 77777777777777766
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.22 E-value=80 Score=34.27 Aligned_cols=142 Identities=10% Similarity=-0.028 Sum_probs=80.7
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCCCChhhHHH----HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNS----LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~ 101 (551)
-+++..+. ..++-|..+-+.-.-+ ...-.. ..+-+-+.|++++|...|-+-.. . .++ +.++.-+..
T Consensus 340 kL~iL~kK--~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~--le~---s~Vi~kfLd 409 (933)
T KOG2114|consen 340 KLDILFKK--NLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--F--LEP---SEVIKKFLD 409 (933)
T ss_pred HHHHHHHh--hhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--c--CCh---HHHHHHhcC
Confidence 34455554 5666666665543322 222222 22345667888888887766542 2 111 235555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhH--HHHHHHHHHhcCChHHHHHHHH
Q 048830 102 VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS--WNSIISCYTQASFHLEALKLYE 179 (551)
Q Consensus 102 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 179 (551)
......--.+++.+.+.|+. +...-+.|+++|.+.++.+.-.++.+.... .... ....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 56666666777777887754 334446788888888888887777776652 1111 2344455555555555554433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.71 E-value=11 Score=28.78 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 71 QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
++.+-++.+...... |++......++||-+.+++..|.++++-++... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLV-PEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455556666677777 888888888888888888888888888776332 22344555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.22 E-value=8.5 Score=29.66 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 274 EAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 274 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+-+..+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 4556666666677889999999999999999999999999998876544 333367666653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.00 E-value=4.1 Score=25.10 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666665543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.96 E-value=14 Score=32.60 Aligned_cols=74 Identities=19% Similarity=0.105 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHHH
Q 048830 171 HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM---GFVESVYVGNALVDMYAKCGNLDSAF 245 (551)
Q Consensus 171 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~ 245 (551)
-+.|.+.|-++...+.- +.......+..|....+.+++.+++..+.+. +-.+|+.++.+|+..|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 35677777777666543 3334444444444566777777777776663 22567777888888888888777764
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.85 E-value=9.8 Score=29.00 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
+.-++.+-++.+....+.|+.....+.++||.+.+++..|.++|+-...+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466677777777788999999999999999999999999999988654332 3445665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.23 E-value=11 Score=33.37 Aligned_cols=74 Identities=15% Similarity=0.063 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCCccchhhhhHHHhhcCCHHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL--KPGIKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~ 347 (551)
++|...|-.+...+.--++.....|...|. ..+.+++.+++....+-++- .+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666554434444444444444 45667777776666654322 346666777777777777776664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.14 E-value=55 Score=31.04 Aligned_cols=17 Identities=0% Similarity=0.004 Sum_probs=7.7
Q ss_pred CChhhHHHHHHHHhccC
Q 048830 87 PDTFTFTFTLKACERVK 103 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~ 103 (551)
+|.......+.++...|
T Consensus 35 ~d~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG 51 (280)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 44444444444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.1 bits (162), Expect = 8e-12
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 7/135 (5%)
Query: 229 NALVDMYAKCGNLDSAFCVFSRMRKR-------DVLSWNSMIVGYGVHGRGDEAISFFKQ 281
A L A + + + +N++++G+ G E +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 282 MLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG 341
+ AG PD +++ L Q +E +S+ LK L+ RA
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 342 KLEKALEVINTSSPS 356
L+ +V T S
Sbjct: 251 VLKAVHKVKPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.0 bits (146), Expect = 7e-10
Identities = 33/250 (13%), Positives = 76/250 (30%), Gaps = 14/250 (5%)
Query: 100 ERVKALNKCQELHGFVI-RSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSW 158
R++ L ++ R + V L+ A + + R ++ E L
Sbjct: 39 MRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARL 98
Query: 159 NSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG----ALNMGIFLHR 214
+ + + L+ C A ++ + H
Sbjct: 99 ---LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR----DVLSWNSMIVGYGVHG 270
+ + ++ + NA++ +A+ G V ++ D+LS+ + + G
Sbjct: 156 QRQK-RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 271 RGDEAIS-FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329
+ I +QM G ++ LL +++ + L P +
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 330 YGCLVDLYGR 339
L D+Y +
Sbjct: 275 SKLLRDVYAK 284
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 44/365 (12%), Positives = 100/365 (27%), Gaps = 116/365 (31%)
Query: 207 NMGIFLHRIACEM-GFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVG 265
+ + + G ++ + + +C F +F W ++
Sbjct: 150 AKNVLID----GVLGSGKTWVALDVCLSYKVQCKM---DFKIF----------WLNL--- 189
Query: 266 YGVHGRGDEAISFFKQM--LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323
+ + + + L+ P+ H ++ + + R
Sbjct: 190 ----KNCNSPETVLEMLQKLLYQIDPN------WTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI---HRNVEIGEIA 380
++ CL+ L L V + W SCKI R ++ +
Sbjct: 240 SKPYEN--CLLVL----------LNV------QNAKAWNAFNLSCKILLTTRFKQVTDF- 280
Query: 381 MKNLVQLEAASAGDYVLLATIYACTKDE-EGVARTRKLIKSNGIKTTPGWSWIEIGNQVH 439
L AA+ L T DE + + L+K + ++ +V
Sbjct: 281 ------LSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDCRPQ------DLPREVL 323
Query: 440 KFVVDDKSHPDA-DMIYRKLEEIMHRAKFIGYTKDESLVAVSGSSSE--DFLEKSSAYHS 496
++P +I + + + + + L + SS + E +
Sbjct: 324 ------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-- 375
Query: 497 EKLAIAFGLATTPDGTSL------------------RIVKNLRSIAYSRDLIVRD----R 534
++L++ F P + +V L YS L+ +
Sbjct: 376 DRLSV-F-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YS--LVEKQPKEST 425
Query: 535 VRYHH 539
+
Sbjct: 426 ISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 73/224 (32%)
Query: 7 ARYVGLNKA---RQAHEIHGEWLLNSYAIS-VSSSLSYAQLLFNQIQNPQTQAWNSLIRA 62
+Y+ R+ + +S ++ S+ ++ ++ ++I +
Sbjct: 308 LKYLDCRPQDLPREVLTTN------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 63 FAQSLSPLQ--------AIF-------------------YYNHMLMA------SLSRPDT 89
L P + ++F + M++ SL
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 90 FTFTFTLKAC---ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSV 146
T ++ + +VK N+ LH ++ Y N+ + + ++ +I
Sbjct: 422 KESTISIPSIYLELKVKLENE-YALHRSIVDH-Y--------NIPKTFDSDDLIP----- 466
Query: 147 FDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR-FEDVGLD 189
P D Y+ HL+ ++ ERM F V LD
Sbjct: 467 ----PYLD----QYF---YSHIGHHLKNIEHPERMTLFRMVFLD 499
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.98 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.97 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.76 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.71 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.59 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.52 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.44 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.42 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.4 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.36 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.3 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.27 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.23 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.22 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.2 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.2 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.18 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.11 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.1 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.07 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.02 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.01 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.91 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.91 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.91 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.79 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.78 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.76 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.57 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.55 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.48 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.34 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.15 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.97 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.92 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.47 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.45 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.43 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.35 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.32 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.51 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.34 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.83 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.93 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.55 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.44 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.75 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.72 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.46 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.09 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.99 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.66 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.85 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.23 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.89 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.84 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.76 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.23 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.21 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.82 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 82.7 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.29 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.86 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.85 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.47 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=324.64 Aligned_cols=398 Identities=11% Similarity=0.046 Sum_probs=349.8
Q ss_pred cCCCCccHHHHHHHHHHcCCCCChHHHHHHHhcC--CCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHc----------
Q 048830 15 ARQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQI--QNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA---------- 82 (551)
Q Consensus 15 g~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------- 82 (551)
+..|+..+++.++..|.+. |++++|..+|+.+ .+++..+|+.++.+|.+.|++++|+++|+++...
T Consensus 112 ~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 112 DITGNPNDAFWLAQVYCCT--GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp HHHCCHHHHHHHHHHHHHT--TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred hhCCCchHHHHHHHHHHHc--CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 3457888999999999999 9999999999988 4678999999999999999999999999853221
Q ss_pred -----CCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH----------------------------
Q 048830 83 -----SLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN---------------------------- 129 (551)
Q Consensus 83 -----~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------------------- 129 (551)
+.. ++..+|+.++.+|.+.|++++|.+.|+++.+.+ +.+...+..
T Consensus 190 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 190 LMQDGGIK-LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp -CCCSSCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 111 357899999999999999999999999999875 223333333
Q ss_pred ----------HHHHHHhCCCHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHH
Q 048830 130 ----------LMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLL 197 (551)
Q Consensus 130 ----------li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 197 (551)
++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 35566788999999999999988 899999999999999999999999999998765 34677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHH
Q 048830 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDE 274 (551)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 274 (551)
.++...|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999764 4578899999999999999999999999875 3578899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcC
Q 048830 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS 354 (551)
Q Consensus 275 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 354 (551)
|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|++++
T Consensus 426 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 426 AISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999864 457789999999999999999999999999864 23368889999999999999999999999843
Q ss_pred C--------CC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 355 P--------SD--PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 355 ~--------~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
. .+ ..+|..++.+|...|++++|...++++++.+|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2 12 7899999999999999999999999999999999999999999999999999999999999764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=311.08 Aligned_cols=380 Identities=8% Similarity=-0.017 Sum_probs=336.6
Q ss_pred CCCCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCC-------------------ChhhHHHHHHHHHcCCChhHHHHHH
Q 048830 16 RQAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNP-------------------QTQAWNSLIRAFAQSLSPLQAIFYY 76 (551)
Q Consensus 16 ~~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~l~ 76 (551)
..+++.+++.++.+|.++ |++++|.++|+++.+. +..+|+.++.+|.+.|++++|+++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 223 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKL--YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECY 223 (597)
T ss_dssp GGTCHHHHHHHHHHHHHT--TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHH--hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 478999999999999999 9999999999965433 4889999999999999999999999
Q ss_pred HHHHHcCCCCCChhhHHHH--------------------------------------HHHHhccCChHHHHHHHHHHHHh
Q 048830 77 NHMLMASLSRPDTFTFTFT--------------------------------------LKACERVKALNKCQELHGFVIRS 118 (551)
Q Consensus 77 ~~m~~~~~~~pd~~~~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~ 118 (551)
++|.+.++. +...+..+ +..|.+.|++++|.++|+.+.+.
T Consensus 224 ~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 224 KEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 999987642 33333322 45566788999999999998775
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHH
Q 048830 119 GYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC 195 (551)
Q Consensus 119 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 195 (551)
+++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..++..
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 58999999999999999999999999999863 467889999999999999999999999998543 456889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCCh
Q 048830 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRG 272 (551)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 272 (551)
++..|.+.|++++|.++++.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999864 34678999999999999999999999998753 4788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--ccchhhhhHHHhhcCCHHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKPG--IKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~ 347 (551)
++|.++|++|.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999864 4478899999999999999999999999997643 55776 789999999999999999999
Q ss_pred HHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 348 EVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 348 ~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
++|++++. .+..+|..+..+|...|++++|...++++++++|+++..+..++++|..
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99998543 3899999999999999999999999999999999999999999998864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-28 Score=240.20 Aligned_cols=371 Identities=12% Similarity=0.047 Sum_probs=312.8
Q ss_pred HHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC
Q 048830 27 LNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK 103 (551)
Q Consensus 27 i~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 103 (551)
...+.+. |++++|.+.|..+. +.+...+..+...+.+.|++++|...++......+ .+..+|..+..++.+.|
T Consensus 6 a~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQA--GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCC
Confidence 4456667 99999999998753 34566777778888999999999999999888764 57788999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 104 ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 104 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
++++|...|+++++.. +.+...+..+..+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|++
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999998874 45567889999999999999999999988764 4 455678888889999999999999999
Q ss_pred hhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHh
Q 048830 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVL 257 (551)
Q Consensus 181 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~ 257 (551)
+.+.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++..+ .+..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 88753 3346788888899999999999999999999875 33577888899999999999999999987652 4678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
+|..+...|...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+..++
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHH
Confidence 89999999999999999999999998853 234577888999999999999999999999764 344678889999999
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
.+.|++++|.+.+++++.. +..+|..+...+...|++++|...+++++++.|+++.+|..++.++...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999986654 788899999999999999999999999999999999999999988877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-27 Score=233.73 Aligned_cols=352 Identities=13% Similarity=0.043 Sum_probs=309.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 138 (551)
+...+.+.|++++|+..+.++.+..+ .+...+..+...+...|++++|...+...++.. +.+..+|..+..+|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 34567789999999999999988764 355667777788889999999999999998874 678889999999999999
Q ss_pred CHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 048830 139 VIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD-GFTLVCLLSSCAHVGALNMGIFLHR 214 (551)
Q Consensus 139 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 214 (551)
++++|...|+++.+ | +..+|..+..++.+.|++++|+..|+++.+. .|+ ...+..+...+...|++++|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998764 4 4568999999999999999999999999875 454 4456677788889999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 215 IACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 215 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++..... +.+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 999875 34578899999999999999999999998863 467789999999999999999999999998853 2346
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~ 367 (551)
.++..+..++...|++++|...|+++.+. .| +..+|..++.+|.+.|++++|.+.|++++. .+..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 88889999999999999999999999763 45 567899999999999999999999988543 388999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+...|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999976
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-29 Score=253.11 Aligned_cols=211 Identities=9% Similarity=0.006 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHcCCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhcc
Q 048830 71 QAIFYYNHMLMASLSRPDT-FTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
.+..+.+++.+.+.. +.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~-~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQ-QSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred hHHHHHHHHHHhccc-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 455666777777665 433 457888999999999999999999999999999999999999999887764432
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHH
Q 048830 150 MPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGN 229 (551)
Q Consensus 150 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 229 (551)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999996 4899999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=251.04 Aligned_cols=197 Identities=14% Similarity=0.172 Sum_probs=176.1
Q ss_pred HHHHhccCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC---------hHH
Q 048830 143 ARSVFDNMPE-----RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA---------LNM 208 (551)
Q Consensus 143 A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~ 208 (551)
+..+.+++.+ .....++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4444455543 12346888999999999999999999999999999999999999999987654 689
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999996 48999999999999999999999999999999
Q ss_pred cCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhc
Q 048830 285 AGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340 (551)
Q Consensus 285 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 340 (551)
.|+.||..||+.||.+|++.|++++|.++|++|.+. +..|+..||+.++..+...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999776 9999999999999998753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-24 Score=219.52 Aligned_cols=392 Identities=9% Similarity=-0.074 Sum_probs=318.7
Q ss_pred ccHHHHHHHHHHcCCCCChHHHHHHHhcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 048830 20 EIHGEWLLNSYAISVSSSLSYAQLLFNQIQ--NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97 (551)
Q Consensus 20 ~~~~~~li~~~~~~~~g~~~~A~~lf~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~ 97 (551)
...+..+...|.+. |++++|...|+++. .|+..+|..+..++.+.|++++|+..|+++.+.++ .+..++..+..
T Consensus 6 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRN--KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHH
Confidence 34566677888898 99999999999875 47899999999999999999999999999998874 46678999999
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHh------------------------------
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVF------------------------------ 147 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~------------------------------ 147 (551)
++...|++++|...|+.+.+.+ +++......++..+.+......+.+.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999998875 334444444444433322222221111
Q ss_pred --------ccCC---------CC-ChhHHHHHHHHHHh---cCChHHHHHHHHHhhh-----CCc--------ccCHHHH
Q 048830 148 --------DNMP---------ER-DLVSWNSIISCYTQ---ASFHLEALKLYERMRF-----EDV--------GLDGFTL 193 (551)
Q Consensus 148 --------~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~p~~~t~ 193 (551)
.... .| +...+......+.. .|++++|+..|+++.+ ..- +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111 01 14445555555554 8999999999999887 311 2234577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcC
Q 048830 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHG 270 (551)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 270 (551)
..+...+...|++++|...++.+.+.... ..++..+..+|...|++++|.+.|+++.+ .+..+|..+...|...|
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 78888999999999999999999997644 88899999999999999999999998764 46778999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHH
Q 048830 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVI 350 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (551)
++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999863 335678888999999999999999999999764 2235778899999999999999999999
Q ss_pred hhcCCC---C------HHHHHHHHHHHHh---cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 351 NTSSPS---D------PVLWRTLLGSCKI---HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 351 ~~~~~~---~------~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
++++.. + ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|...++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 885543 2 4489999999999 999999999999999999999999999999999999999999999998
Q ss_pred HhC
Q 048830 419 KSN 421 (551)
Q Consensus 419 ~~~ 421 (551)
.+.
T Consensus 476 ~~~ 478 (514)
T 2gw1_A 476 ADL 478 (514)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=214.18 Aligned_cols=335 Identities=9% Similarity=0.042 Sum_probs=260.9
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 130 (551)
.+...|..+...+.+.|++++|+.+|+++....+ .+..++..+..++...|++++|...++.+++.+ +.+..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3567788888888889999999999988887654 467788888888888888889988888888875 4567777888
Q ss_pred HHHHHhCCCHHHHHHHhccCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC
Q 048830 131 MRGYAANGVIEAARSVFDNMPE--RD-L---VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG 204 (551)
Q Consensus 131 i~~y~~~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 204 (551)
..+|.+.|++++|.+.|+++.+ |+ . .+|..++..+...+ +..+...+...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcC
Confidence 8888888888888888877754 22 2 45555554422111 122233455677
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQ 281 (551)
Q Consensus 205 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 281 (551)
++++|...++.+.+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777777654 34667788888888888888888888888753 4678888888999999999999999998
Q ss_pred HHHcCCCCCHh-hHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCH
Q 048830 282 MLMAGFHPDSI-TFLGL------------LCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKL 343 (551)
Q Consensus 282 m~~~g~~p~~~-t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~ 343 (551)
+... .|+.. .+..+ ...|.+.|++++|..+|+.+.+. .|+ ..++..++.++.+.|++
T Consensus 237 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 8864 44443 33333 78889999999999999999864 444 45788999999999999
Q ss_pred HHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH------------HHhhhcC--
Q 048830 344 EKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA------------TIYACTK-- 406 (551)
Q Consensus 344 ~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-- 406 (551)
++|.+.++++++ .+..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 999999998553 38899999999999999999999999999999999999999998 5577677
Q ss_pred ---ChhHHHHHHHH
Q 048830 407 ---DEEGVARTRKL 417 (551)
Q Consensus 407 ---~~~~a~~~~~~ 417 (551)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 55666777665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-23 Score=215.47 Aligned_cols=374 Identities=9% Similarity=-0.058 Sum_probs=298.4
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~ 93 (551)
.|++.++..+...|.+. |++++|...|+++. +.+..+|..+..+|...|++++|+..|+++...+. ++.....
T Consensus 36 ~p~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~ 111 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD--FNDASIE 111 (514)
T ss_dssp CCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--CCGGGTH
T ss_pred CccHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CccchHH
Confidence 37999999999999999 99999999999764 45778999999999999999999999999998875 4555555
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHh-----------------------------------CC---------CCChhHHHH
Q 048830 94 FTLKACERVKALNKCQELHGFVIRS-----------------------------------GY---------ERCVVVSTN 129 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------------------g~---------~~~~~~~~~ 129 (551)
.++..+........+.+.+..+... .. +.+...+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (514)
T 2gw1_A 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELM 191 (514)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHH
Confidence 5554444332222222222111000 00 112444444
Q ss_pred HHHHHHh---CCCHHHHHHHhccCCC----------------C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC
Q 048830 130 LMRGYAA---NGVIEAARSVFDNMPE----------------R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD 189 (551)
Q Consensus 130 li~~y~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 189 (551)
+...+.. .|++++|...|+++.+ | +..+|..+...+...|++++|+..|+++.+.. |+
T Consensus 192 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~ 269 (514)
T 2gw1_A 192 NGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR 269 (514)
T ss_dssp HHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc
Confidence 5555554 8999999999987644 1 34578889999999999999999999998754 44
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGY 266 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 266 (551)
...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++. ..+..+|..+...|
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 7788889999999999999999999998864 3467789999999999999999999999875 24677899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhh---
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGR--- 339 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~--- 339 (551)
...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...|..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998863 335678888999999999999999999999764222222 3378899999999
Q ss_pred cCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 340 AGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
.|++++|.+.+++++.. +..+|..+...+...|++++|...++++++++|.++..+..+
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999885433 888999999999999999999999999999999988777665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-22 Score=201.24 Aligned_cols=362 Identities=12% Similarity=0.020 Sum_probs=227.0
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTF 94 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ 94 (551)
.++..+..+...|.+. |++++|..+|+++. +.+..+|..+...|...|++++|+..|+++.+.++ .+..++..
T Consensus 24 ~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAA--GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM--DFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHH
Confidence 4667889999999999 99999999999764 45788999999999999999999999999999875 46788999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCCh
Q 048830 95 TLKACERVKALNKCQELHGFVIRSGYERCV---VVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFH 171 (551)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 171 (551)
+..++...|++++|...++.+.+.. +.+. ..+..++..+.. ..+..+...+...|++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCH
Confidence 9999999999999999999998753 3344 566666554211 1122223334444444
Q ss_pred HHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 172 LEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 172 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444321 2233344444444444444444444444444432 223444455555555555555555555544
Q ss_pred CC---CCHhHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHhccCCHHHHH
Q 048830 252 RK---RDVLSWNSM------------IVGYGVHGRGDEAISFFKQMLMAGFHPD-----SITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 252 ~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~ 311 (551)
.+ .+...+..+ ...+...|++++|+..|+++... .|+ ...+..+..++.+.|++++|.
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 31 122223222 56666667777777777776663 333 235566666667777777777
Q ss_pred HHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH------------HHhcC---
Q 048830 312 EYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS------------CKIHR--- 372 (551)
Q Consensus 312 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~------------~~~~g--- 372 (551)
..++.+.+. .| +...|..+..+|...|++++|.+.+++++.. +...+..+..+ |...|
T Consensus 316 ~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 316 RVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 777766542 23 4566666777777777777777777664433 55555555522 33333
Q ss_pred --cHHHHHHHHHH-HHhhcCCCcc----------hHHHHHHHhhhcCChhH
Q 048830 373 --NVEIGEIAMKN-LVQLEAASAG----------DYVLLATIYACTKDEEG 410 (551)
Q Consensus 373 --~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 410 (551)
+.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56777888886 6677776422 44556666666665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=204.25 Aligned_cols=387 Identities=9% Similarity=0.006 Sum_probs=295.4
Q ss_pred ccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHH
Q 048830 20 EIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTL 96 (551)
Q Consensus 20 ~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll 96 (551)
...+..+...+.+. |++++|...|+++. +.+..+|..+..+|.+.|++++|+..|+++...++ .+..++..+.
T Consensus 25 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHH
Confidence 34566677778888 88888888887653 35677888888888888888888888888887764 4667777888
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCC----------Chh----------
Q 048830 97 KACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPER----------DLV---------- 156 (551)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----------~~~---------- 156 (551)
.++...|++++|...++ ... ..|+. ....+..+...+....|...++++... +..
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLS--LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHh--cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 88888888888888885 322 22222 222344555556667777777666431 111
Q ss_pred --------------------HHHHHHHHHHh--------cCChHHHHHHHHHhhhCCcccC--------HHHHHHHHHHH
Q 048830 157 --------------------SWNSIISCYTQ--------ASFHLEALKLYERMRFEDVGLD--------GFTLVCLLSSC 200 (551)
Q Consensus 157 --------------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~--------~~t~~~ll~~~ 200 (551)
.+..+...+.. .|++++|+.+|+++.+.. |+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHH
Confidence 12222222211 247899999999998653 43 23566677788
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 048830 201 AHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAIS 277 (551)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 277 (551)
...|++++|...+..+.+.. |+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 88999999999999999975 4578889999999999999999999998753 467899999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-
Q 048830 278 FFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS- 356 (551)
Q Consensus 278 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 356 (551)
.|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|...|++++|.+.|++++..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999864 334578888999999999999999999999864 2335678899999999999999999999885432
Q ss_pred --------CHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 357 --------DPVLWRTLLGSCKIH----------RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 357 --------~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
....+..+...+... |++++|...++++++.+|+++.++..++.+|...|++++|.+.++++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333455556777777 99999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 048830 419 KSNG 422 (551)
Q Consensus 419 ~~~g 422 (551)
.+..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-21 Score=198.04 Aligned_cols=366 Identities=10% Similarity=-0.013 Sum_probs=281.3
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~ 93 (551)
+.++..+..+...|.+. |++++|...|++.. +.+..+|..+...+...|++++|+..|+. .... |+...
T Consensus 56 p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~---~~~~~-- 127 (537)
T 3fp2_A 56 PNEPVFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-LSLN---GDFDG-- 127 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HC------------
T ss_pred CCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHH-HhcC---CCCCh--
Confidence 34778899999999999 99999999999764 45788999999999999999999999963 3333 33221
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHh------CCCCChh------------------------------HHHHHHHHHHhC
Q 048830 94 FTLKACERVKALNKCQELHGFVIRS------GYERCVV------------------------------VSTNLMRGYAAN 137 (551)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~------------------------------~~~~li~~y~~~ 137 (551)
..+..+...+....|...+..+.+. ...|+.. ....+...+...
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207 (537)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence 1222333444556777777776432 0111111 233333333332
Q ss_pred --------CCHHHHHHHhccCCC--CC--------hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 048830 138 --------GVIEAARSVFDNMPE--RD--------LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199 (551)
Q Consensus 138 --------g~~~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 199 (551)
|++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|++..+. .|+...+..+...
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 478999999988865 33 235777778899999999999999999874 5667888889999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 048830 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAI 276 (551)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 276 (551)
+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999875 34678899999999999999999999998753 45778999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch------hhhhHHHhhc----------
Q 048830 277 SFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY------GCLVDLYGRA---------- 340 (551)
Q Consensus 277 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------~~li~~~~~~---------- 340 (551)
..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...- +...+ ..+..+|.+.
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 365 AFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV--QEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--CSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 9999999863 344678888999999999999999999998765211 22222 2334677777
Q ss_pred CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 341 GKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
|++++|...|++++.. +..+|..+...+...|++++|...+++++++.|.++....
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999985533 8899999999999999999999999999999999776544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=177.99 Aligned_cols=325 Identities=8% Similarity=-0.010 Sum_probs=223.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
|+..|..+...+...|++++|+..|+++....+ .+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 345677777788888888888888888877664 456677777777888888888888888877763 34556667777
Q ss_pred HHHHhCCCHHHHHHHhccCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC
Q 048830 132 RGYAANGVIEAARSVFDNMPE--R----DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 205 (551)
.+|.+.|++++|...|++..+ | +...+..+...+. ...+..+...+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 777777777777777766644 2 1222222211100 0112223455667777
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
+++|...+..+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+...|...|++++|...|++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777654 33566777777888888888888888877653 35677778888888888888888888887
Q ss_pred HHcCCCCCH-hhHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--ccchhhhhHHHhhcCCHHHHH
Q 048830 283 LMAGFHPDS-ITFL------------GLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--IKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 283 ~~~g~~p~~-~t~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 347 (551)
.+.. |+. ..+. .+...+...|++++|...++.+.+...-.|. ...+..+..+|...|++++|.
T Consensus 215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7642 332 2222 2355677888888888888888764211111 123455777888888888888
Q ss_pred HHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc
Q 048830 348 EVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 348 ~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 405 (551)
+.+++++.. +..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 888774432 7788888888888888888888888888888888888777776665443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-19 Score=172.66 Aligned_cols=303 Identities=9% Similarity=-0.061 Sum_probs=234.0
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHH
Q 048830 89 TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCY 165 (551)
Q Consensus 89 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 165 (551)
...+..+...+...|++++|...++.+++.. +.++.++..+..+|...|++++|...|+++.+ .+..+|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556667777778888888888888887764 45567777777778888888888887776643 3556777777777
Q ss_pred HhcCChHHHHHHHHHhhhCCccc---CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048830 166 TQASFHLEALKLYERMRFEDVGL---DGF-TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL 241 (551)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~~~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 241 (551)
...|++++|+..|++..+. .| +.. .+..+.... . ...+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 7778888888887777654 34 211 111111110 0 11233456788999999
Q ss_pred HHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 242 DSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 242 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
++|.+.|+++.+ .+...|..+...+...|++++|+..++++.... +.+..++..+...+...|++++|...++.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998753 577889999999999999999999999999863 4467888899999999999999999999997
Q ss_pred HhcCCCCC-ccchh------------hhhHHHhhcCCHHHHHHHHhhcCCC---CH----HHHHHHHHHHHhcCcHHHHH
Q 048830 319 SRYNLKPG-IKHYG------------CLVDLYGRAGKLEKALEVINTSSPS---DP----VLWRTLLGSCKIHRNVEIGE 378 (551)
Q Consensus 319 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~ll~~~~~~g~~~~a~ 378 (551)
+. .|+ ...+. .+...+.+.|++++|.+.+++++.. +. ..+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 64 343 23222 3367789999999999999885543 44 33556778999999999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 379 IAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 379 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-20 Score=179.73 Aligned_cols=287 Identities=16% Similarity=0.108 Sum_probs=142.2
Q ss_pred cCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHH
Q 048830 32 ISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQEL 111 (551)
Q Consensus 32 ~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~ 111 (551)
+. |++++|.+.+++++.|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+
T Consensus 15 ~~--~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HI--GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hc--cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66 89999999999997664 9999999999999999999999652 7788999999999999999999998
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH
Q 048830 112 HGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF 191 (551)
Q Consensus 112 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 191 (551)
++...+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ .
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 8888774 45688899999999999999999988864 77789999999999999999999999987 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC
Q 048830 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGR 271 (551)
Q Consensus 192 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 271 (551)
.|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 7999999999999999999999987 378999999999999999999988877755 455445578999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC------CccchhhhhHHHhhcCCHHH
Q 048830 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP------GIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 345 (551)
+++|+.+++...... +-....|+.|.-+|++- ++++..+.++...++-+++| +...|.-++..|...++++.
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999999999988643 33345666666666653 34444444443334446666 58899999999999999999
Q ss_pred HHHHHhh
Q 048830 346 ALEVINT 352 (551)
Q Consensus 346 A~~~~~~ 352 (551)
|....-+
T Consensus 301 A~~tm~~ 307 (449)
T 1b89_A 301 AIITMMN 307 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887766
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-19 Score=172.16 Aligned_cols=283 Identities=12% Similarity=0.007 Sum_probs=170.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS 199 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 199 (551)
++.++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 333444444444455555555555544432 223334444455555555555555555554421 1233444445555
Q ss_pred HHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHH
Q 048830 200 CAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEA 275 (551)
Q Consensus 200 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 275 (551)
+...| ++++|...++.+.+.. +.+...+..+..+|...|++++|.+.|+++.+ .+..++..+...|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 55555 5555555555555433 22344555566666666666666666665432 2345555566666666677777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCCccchhhhhHHHhhcCCHHHHHH
Q 048830 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN-------LKPGIKHYGCLVDLYGRAGKLEKALE 348 (551)
Q Consensus 276 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (551)
...|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+..+|...|++++|.+
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77776666542 23445666666667777777777777776655321 12235677777788888888888888
Q ss_pred HHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh-hhcCCh
Q 048830 349 VINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTKDE 408 (551)
Q Consensus 349 ~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 408 (551)
.+++++.. +...|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 77764432 7788888888888889999999999999999998888888888887 455554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-17 Score=168.42 Aligned_cols=364 Identities=12% Similarity=0.020 Sum_probs=250.4
Q ss_pred CccHHHHHHHHHHc----CCCCChHHHHHHHhcCC-CCChhhHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCCh
Q 048830 19 HEIHGEWLLNSYAI----SVSSSLSYAQLLFNQIQ-NPQTQAWNSLIRAFAQ----SLSPLQAIFYYNHMLMASLSRPDT 89 (551)
Q Consensus 19 ~~~~~~~li~~~~~----~~~g~~~~A~~lf~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~pd~ 89 (551)
++..+..|-..|.. . ++++.|...|++.. ..+..++..|...|.. .+++++|+..|++....+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~--~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETT--KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CH
T ss_pred CHHHHHHHHHHHHcCCCCC--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CH
Confidence 55556666666666 5 77777877776543 3456677777777777 777788888887777653 34
Q ss_pred hhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCCHHHHHHHhccCCC-CChhHHHH
Q 048830 90 FTFTFTLKACER----VKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA----NGVIEAARSVFDNMPE-RDLVSWNS 160 (551)
Q Consensus 90 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~ 160 (551)
..+..+...+.. .+++++|...|++..+.| ++..+..|..+|.. .++.++|.+.|++..+ .+..++..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555566666666 677788888887777655 45566667777776 6777888877776543 45667777
Q ss_pred HHHHHHh----cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048830 161 IISCYTQ----ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGNALV 232 (551)
Q Consensus 161 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 232 (551)
|...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.| +...+..|.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 7777776 677888888887776654 34455556666654 667778887777777654 345666667
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 233 DMYAK----CGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVH-----GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 233 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
.+|.. .++.++|.+.|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 77776 7778888888777654 4566667777777766 77888888888777754 3445555666665
Q ss_pred ccC---CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----
Q 048830 303 HQG---LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI---- 370 (551)
Q Consensus 303 ~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~---- 370 (551)
..| +.++|..+|++..+. .+...+..|..+|.. .+++++|.+.|+++... ++..+..|...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 545 677777777777653 345666777777776 77788888888776655 77777777777776
Q ss_pred cCcHHHHHHHHHHHHhhcCC---CcchHHHHHHHhhh
Q 048830 371 HRNVEIGEIAMKNLVQLEAA---SAGDYVLLATIYAC 404 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 404 (551)
.++.++|...|+++.+.+|+ ++.....|+.++..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 67888888888888877743 56666666666554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-16 Score=162.54 Aligned_cols=352 Identities=13% Similarity=0.032 Sum_probs=301.0
Q ss_pred CCChhhHHHHHHHHHc----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCC
Q 048830 50 NPQTQAWNSLIRAFAQ----SLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACER----VKALNKCQELHGFVIRSGYE 121 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~ 121 (551)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|...|.+..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 4578888888888888 899999999999998864 55677778888888 899999999999998865
Q ss_pred CChhHHHHHHHHHHh----CCCHHHHHHHhccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhCCcccCHHH
Q 048830 122 RCVVVSTNLMRGYAA----NGVIEAARSVFDNMPE-RDLVSWNSIISCYTQ----ASFHLEALKLYERMRFEDVGLDGFT 192 (551)
Q Consensus 122 ~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t 192 (551)
++..+..|..+|.. .+++++|.+.|++..+ .+..++..|...|.. .+++++|+..|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 66777889999998 8899999999998765 467788889998987 789999999999998865 5677
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHH
Q 048830 193 LVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK----CGNLDSAFCVFSRMRK-RDVLSWNSMI 263 (551)
Q Consensus 193 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 263 (551)
+..+...+.. .++.++|...+....+.| +...+..|..+|.. .+++++|.++|++..+ .+..++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7778888877 899999999999999875 56778888889986 8999999999998764 5677888888
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCCccchhhhh
Q 048830 264 VGYGV----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ-----GLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334 (551)
Q Consensus 264 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 334 (551)
..|.. .++.++|+..|++..+.| +...+..+...|... ++.++|..+|++..+. + +...+..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 88888 899999999999998765 455666777777776 8999999999999764 2 456777888
Q ss_pred HHHhhcC---CHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh--
Q 048830 335 DLYGRAG---KLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC-- 404 (551)
Q Consensus 335 ~~~~~~g---~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 404 (551)
.+|...| ++++|.++|+++... ++..+..|...|.. .++.++|...++++.+.+ ++.++..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888766 899999999997776 89999999999998 899999999999998865 57899999999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 048830 405 --TKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 405 --~g~~~~a~~~~~~m~~~g~ 423 (551)
.++.++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-16 Score=166.24 Aligned_cols=393 Identities=10% Similarity=0.041 Sum_probs=292.2
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFT 93 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~ 93 (551)
+.|...|..++. +.+. |++++|+.+|+++. +.+...|..++..+.+.|++++|..+|++.+... |+...|.
T Consensus 10 P~~~~~w~~l~~-~~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~ 83 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWK 83 (530)
T ss_dssp TTCHHHHHHHHH-HHHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHH
T ss_pred CCCHHHHHHHHH-HHHh--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHH
Confidence 347778999998 4778 99999999999875 3467789999999999999999999999998764 7766676
Q ss_pred HHHHHH-hccCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------CCCHHHHHHHhccCCC-CCh-
Q 048830 94 FTLKAC-ERVKALNKCQE----LHGFVIRS-GYER-CVVVSTNLMRGYAA---------NGVIEAARSVFDNMPE-RDL- 155 (551)
Q Consensus 94 ~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~m~~-~~~- 155 (551)
..+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|.++|++..+ |+.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 666433 34577766655 77776654 5443 56678888877665 6889999999998765 332
Q ss_pred --hHHHHHHHHH-------------HhcCChHHHHHHHHHh------hhCC---cccCH--------HHHHHHHHHHHhc
Q 048830 156 --VSWNSIISCY-------------TQASFHLEALKLYERM------RFED---VGLDG--------FTLVCLLSSCAHV 203 (551)
Q Consensus 156 --~~~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~---~~p~~--------~t~~~ll~~~~~~ 203 (551)
..|....... ...+++..|..++..+ .+.. ++|+. ..|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 3344322211 1245677787777652 2221 34432 2333333322221
Q ss_pred ----CCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC---C-CHh
Q 048830 204 ----GAL----NMGIFLHRIACEMGFVESVYVGNALVDMYAK-------CGNLD-------SAFCVFSRMRK---R-DVL 257 (551)
Q Consensus 204 ----~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~ 257 (551)
++. +.+..+++++++.. +.+..+|..++..+.+ .|+++ +|.++|++..+ | +..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 36778888888863 4467888888888876 79987 99999998764 3 578
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhh
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS--ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLV 334 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 334 (551)
.|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|+...+. .|+ ...|...+
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a 397 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHH
Confidence 8999999999999999999999999984 5653 47888888888999999999999999753 343 33333322
Q ss_pred HH-HhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc----hHHHHHHHhhhcC
Q 048830 335 DL-YGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG----DYVLLATIYACTK 406 (551)
Q Consensus 335 ~~-~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g 406 (551)
.+ +...|+.++|..+|++++.. ++..|..++..+...|+.+.|..+|+++++..|.+|. .|...+......|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 34689999999999986644 8999999999999999999999999999998877665 7777888888899
Q ss_pred ChhHHHHHHHHHHhC
Q 048830 407 DEEGVARTRKLIKSN 421 (551)
Q Consensus 407 ~~~~a~~~~~~m~~~ 421 (551)
+.+.+..+.+++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-17 Score=159.97 Aligned_cols=284 Identities=13% Similarity=0.005 Sum_probs=182.5
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 130 (551)
.+...+..+...+...|++++|+.+|+++....+ .+...+..++..+...|++++|...+..+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4556666777777777888888888877777654 344556666677777777777777777777653 3455566666
Q ss_pred HHHHHhCC-CHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCCh
Q 048830 131 MRGYAANG-VIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206 (551)
Q Consensus 131 i~~y~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 206 (551)
...|...| ++++|...|++..+ .+..+|..+...+...|++++|+..|++..+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------------- 153 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ----------------------- 153 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------------------
Confidence 66666666 66666666655433 2344555555555555555555555555544
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
.. +.+...+..+...|...|++++|.+.|++..+ .+..+|..+...+...|++++|+..|+++.
T Consensus 154 ------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 154 ------------LM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp ------------HT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------hc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 11233444455566666666666666665442 345666667777777777777777777766
Q ss_pred HcC--------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC
Q 048830 284 MAG--------FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355 (551)
Q Consensus 284 ~~g--------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 355 (551)
... .+.+..++..+...+...|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.+++++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 531 1223457777777888888888888888877653 122566777888888888888888888887655
Q ss_pred C---CHHHHHHHHHHH-HhcCcHH
Q 048830 356 S---DPVLWRTLLGSC-KIHRNVE 375 (551)
Q Consensus 356 ~---~~~~~~~ll~~~-~~~g~~~ 375 (551)
. +...+..+..++ ...|+.+
T Consensus 299 ~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCCCchHHHHHHHHHHHHHhCchh
Confidence 4 677777777766 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=170.44 Aligned_cols=279 Identities=12% Similarity=-0.042 Sum_probs=217.5
Q ss_pred HHhCCCHHHHHH-HhccCCC-----C--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC
Q 048830 134 YAANGVIEAARS-VFDNMPE-----R--DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205 (551)
Q Consensus 134 y~~~g~~~~A~~-~~~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 205 (551)
|.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577788877 7765443 1 34567888888888899999999888888753 3456677888888888899
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHH---------------HHHHHH
Q 048830 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVLSWNS---------------MIVGYG 267 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 267 (551)
+++|...++.+.+.. +.+..++..+..+|...|++++|.+.|+++.+ | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999998888888875 34677888888889999999999988887653 2 2222211 133334
Q ss_pred hcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHH
Q 048830 268 VHGRGDEAISFFKQMLMAGFH-PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 268 ~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 345 (551)
..|++++|+..|+++...... ++..++..+...+...|++++|...|+.+.+. .| +...+..+..+|.+.|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999986322 14788899999999999999999999999764 34 57789999999999999999
Q ss_pred HHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC-----------cchHHHHHHHhhhcCChhHH
Q 048830 346 ALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-----------AGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 346 A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a 411 (551)
|.+.|++++.. +..+|..+...+...|++++|...+++++++.|++ +.+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999885533 88899999999999999999999999999999887 78999999999999999999
Q ss_pred HHHHHH
Q 048830 412 ARTRKL 417 (551)
Q Consensus 412 ~~~~~~ 417 (551)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 998763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=167.92 Aligned_cols=280 Identities=14% Similarity=0.031 Sum_probs=175.5
Q ss_pred CCChhHHHH-HHHHHHHcCCCCC--ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 048830 66 SLSPLQAIF-YYNHMLMASLSRP--DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142 (551)
Q Consensus 66 ~g~~~~A~~-l~~~m~~~~~~~p--d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 142 (551)
.|++++|++ .|++........| +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6655443322112 34456666666777777777777777776653 4456666667777777777777
Q ss_pred HHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHH---------------HHHHHHhc
Q 048830 143 ARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVC---------------LLSSCAHV 203 (551)
Q Consensus 143 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~---------------ll~~~~~~ 203 (551)
|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. |+.. .+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777765542 355667777777777777777777777776543 2211 1110 23333377
Q ss_pred CChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFF 279 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (551)
|++++|...++.+.+..... +..++..+..+|.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 78888888888877764321 466777778888888888888888777642 35667777777788888888888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------------ccchhhhhHHHhhcCCHHHHH
Q 048830 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG------------IKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~ 347 (551)
+++.+.. +.+..++..+..++...|++++|...|+.+.+. .|+ ..+|..+..+|...|+.++|.
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 8777652 334566777777777788888888777777643 221 355666666666666666666
Q ss_pred HHHhh
Q 048830 348 EVINT 352 (551)
Q Consensus 348 ~~~~~ 352 (551)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 66554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-18 Score=167.28 Aligned_cols=260 Identities=12% Similarity=-0.052 Sum_probs=213.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668889999999999999999999988753 3467788889999999999999999999998875 345788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHhhHHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRKRD-------------VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PDSITFLGLLC 299 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 299 (551)
+|...|++++|.+.|+++.+.+ ...+..+...+...|++++|+..|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999876421 223345578899999999999999999986422 15788999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
.+...|++++|...|+++.+. .+.+..+|..+..+|...|++++|.+.|++++.. +..+|..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 2336788999999999999999999999885543 78999999999999999999
Q ss_pred HHHHHHHHHhhcCC------------CcchHHHHHHHhhhcCChhHHHHHHHH
Q 048830 377 GEIAMKNLVQLEAA------------SAGDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 377 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
|...+++++++.|. +...+..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999877 367899999999999999998887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=163.98 Aligned_cols=368 Identities=12% Similarity=-0.037 Sum_probs=240.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHc-----C--CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-----
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMA-----S--LSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSG----- 119 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~--~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 119 (551)
....||.|...+...|++++|++.|++..+. + .......+|..+..+|...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999887542 1 110234578889999999999999999998887531
Q ss_pred -C-CCChhHHHHHHHHHHh--CCCHHHHHHHhccCCC--C-ChhHHHHHHHH---HHhcCChHHHHHHHHHhhhCCcccC
Q 048830 120 -Y-ERCVVVSTNLMRGYAA--NGVIEAARSVFDNMPE--R-DLVSWNSIISC---YTQASFHLEALKLYERMRFEDVGLD 189 (551)
Q Consensus 120 -~-~~~~~~~~~li~~y~~--~g~~~~A~~~~~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~ 189 (551)
. .....++..+..++.+ .+++++|+..|++..+ | +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 1234566666555554 4568999999988754 3 44555555544 345678888999988877643 234
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHH
Q 048830 190 GFTLVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSM 262 (551)
Q Consensus 190 ~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 262 (551)
...+..+...+.. .++.++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 4455555545544 456788999999888865 34577888899999999999999999988753 355667666
Q ss_pred HHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048830 263 IVGYGVH-------------------GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323 (551)
Q Consensus 263 i~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (551)
...|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++..+. ..
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~ 365 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-EL 365 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CC
Confidence 6655432 34667888888877753 334567888889999999999999999998753 22
Q ss_pred CCCc--cchhhhhH-HHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 324 KPGI--KHYGCLVD-LYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 324 ~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
.|.. ..+..+.. .+...|+.++|+..|++++.. +...+ .+..+.+..++++.++.+|+++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKMKDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHHHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2211 12333333 234678999999999886655 22111 1233456677888889999999999999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 048830 399 ATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWI 432 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 432 (551)
+.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHCC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999988766555555664
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-19 Score=172.53 Aligned_cols=280 Identities=11% Similarity=0.062 Sum_probs=124.8
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 101 RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 101 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677887777776 23347788888888888888888888654 5666788888888888888888886666
Q ss_pred hhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHH
Q 048830 181 MRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWN 260 (551)
Q Consensus 181 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 260 (551)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 5553 4556777788888888888888777764 366678888888888888888888888876 4788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhc
Q 048830 261 SMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRA 340 (551)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 340 (551)
.++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHC
Confidence 8888888888888888888877 2677888888888888888888554332 223334455688888888
Q ss_pred CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhhcC-----CCcchHHHHHHHhhhcCChhH
Q 048830 341 GKLEKALEVINTSSPS---DPVLWRTLLGSCKIH--RNVEIGEIAMKNLVQLEA-----ASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~ 410 (551)
|++++|..+++.++.. ....|+-|..+|.+. ++..+..++|..-+.+.| .++..|..+...|.+.+.|+.
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 8888888888887766 677777777777664 345555555554444555 567788888888888888888
Q ss_pred HHHH
Q 048830 411 VART 414 (551)
Q Consensus 411 a~~~ 414 (551)
|..+
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-16 Score=149.91 Aligned_cols=268 Identities=10% Similarity=-0.066 Sum_probs=205.3
Q ss_pred HHhCCCHHHHHHHhccCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHH
Q 048830 134 YAANGVIEAARSVFDNMPERDL----VSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMG 209 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 209 (551)
....|+++.|+..++.....+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456788888887776655332 2445567788888888888876543 1355666777777788888888888
Q ss_pred HHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 048830 210 IFLHRIACEMGFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH 288 (551)
Q Consensus 210 ~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 288 (551)
.+.++.+...+..| +...+..+..+|...|++++|.+.|++ ..+...+..++..|.+.|++++|...|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 88888887766444 466677778899999999999999998 567889999999999999999999999999986 3
Q ss_pred CCHhhH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHH
Q 048830 289 PDSITF---LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWR 362 (551)
Q Consensus 289 p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 362 (551)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++++.. ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 654321 12334445668999999999999875 3457888999999999999999999999886644 889999
Q ss_pred HHHHHHHhcCcHHH-HHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHH
Q 048830 363 TLLGSCKIHRNVEI-GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 363 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
.++..+...|+.++ +...++++++++|+++.+. +...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 99999999998875 6789999999999987644 4555566666555433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-15 Score=162.08 Aligned_cols=349 Identities=12% Similarity=0.035 Sum_probs=272.8
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCC-CC-----ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ-NP-----QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTF 92 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~ 92 (551)
|+.--...+..|+.. |.+.+|.++++++. .| +...-|.++.+..+. +..+..+..++.. ....
T Consensus 984 ~PeeVs~~vKaf~~a--glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTA--DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDA 1052 (1630)
T ss_pred CHHHhHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccH
Confidence 334445567788887 88888888888765 22 224455566666665 4455555555543 1223
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChH
Q 048830 93 TFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHL 172 (551)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 172 (551)
..+...|...|.+++|..+|++.. ......+.+ +-..+++++|.++.+++. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 346677888999999999998852 122222323 237788999999998774 4678999999999999999
Q ss_pred HHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 173 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
+|++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++..... .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 999999654 567788889999999999999999999988865 44445556999999999999655443 4
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhh
Q 048830 253 KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGC 332 (551)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 332 (551)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHH
Confidence 567778888999999999999999999985 37899999999999999999999876 35588999
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc--CChhH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT--KDEEG 410 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~ 410 (551)
+..++...|++..|...... +..++..+..++..|...|.+++|..++++.+.++|.+.+.|..|+.+|++. ++..+
T Consensus 1256 v~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999998876 6668888889999999999999999999999999999999998888888876 34555
Q ss_pred HHHHHH
Q 048830 411 VARTRK 416 (551)
Q Consensus 411 a~~~~~ 416 (551)
+.++|.
T Consensus 1335 hlk~f~ 1340 (1630)
T 1xi4_A 1335 HLELFW 1340 (1630)
T ss_pred HHHHHH
Confidence 555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=164.84 Aligned_cols=261 Identities=15% Similarity=-0.017 Sum_probs=175.2
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHH
Q 048830 88 DTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISC 164 (551)
Q Consensus 88 d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 164 (551)
+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457777777777788888888888877764 45677777788888888888888888777653 346678888888
Q ss_pred HHhcCChHHHHHHHHHhhhCCcccCH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-CchhHHHHHH
Q 048830 165 YTQASFHLEALKLYERMRFEDVGLDG-----------FTLVCLLSSCAHVGALNMGIFLHRIACEMGFV-ESVYVGNALV 232 (551)
Q Consensus 165 ~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li 232 (551)
|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|...++.+.+.... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888876632 322 22233466777788888888888888876432 1567777888
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 309 (551)
.+|.+.|++++|.+.|+++.+ .+..+|+.+...|...|++++|+..|+++.+.. +.+..++..+..+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 888888888888888877642 456778888888888888888888888877752 2335677777788888888888
Q ss_pred HHHHHHHhHHhcCCC----------CCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 310 GVEYFHMMVSRYNLK----------PGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 310 a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
|...|+++.+...-. .+...|..+..++...|+.+.|....++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888888776531100 0134455555555555555555554444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-15 Score=158.75 Aligned_cols=364 Identities=8% Similarity=0.018 Sum_probs=270.1
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 048830 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTN 129 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 129 (551)
+.|...|..++. +.+.|++++|..+|+++.+..+ .+...|...+..+.+.|++++|..+|+++++. .|++..|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 347889999998 5789999999999999998764 46668899999999999999999999999886 367778877
Q ss_pred HHH-HHHhCCCHHHHHH----HhccCC------CCChhHHHHHHHHHHh---------cCChHHHHHHHHHhhhCCcccC
Q 048830 130 LMR-GYAANGVIEAARS----VFDNMP------ERDLVSWNSIISCYTQ---------ASFHLEALKLYERMRFEDVGLD 189 (551)
Q Consensus 130 li~-~y~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~ 189 (551)
.+. .....|+.+.|.+ +|+... .++...|...+..... .|++++|..+|++..+....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 775 3346688777665 666542 1356788888876654 6899999999999987311111
Q ss_pred HHHHHHHHHHH-------------HhcCChHHHHHHHHHHHH------hC---CCCc--------hhHHHHHHHHHHhc-
Q 048830 190 GFTLVCLLSSC-------------AHVGALNMGIFLHRIACE------MG---FVES--------VYVGNALVDMYAKC- 238 (551)
Q Consensus 190 ~~t~~~ll~~~-------------~~~~~~~~a~~~~~~~~~------~g---~~~~--------~~~~~~li~~y~~~- 238 (551)
...|....... ...+.++.|..++..... .. ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23333222211 123456677766665322 11 2333 24555555433322
Q ss_pred ---CCH----HHHHHHHHhcCC---CCHhHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCC-CHhh
Q 048830 239 ---GNL----DSAFCVFSRMRK---RDVLSWNSMIVGYGV-------HGRGD-------EAISFFKQMLMAGFHP-DSIT 293 (551)
Q Consensus 239 ---g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-~~~t 293 (551)
++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..+|++.... +.| +...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHH
Confidence 232 367778887764 467889988888876 79987 899999998863 245 4677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-c-cchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH-
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-I-KHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS- 367 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~- 367 (551)
+..++..+.+.|++++|..+|+.+++ +.|+ . ..|..++..+.+.|++++|.++|++++.. +...|...+..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 88888899999999999999999985 4564 2 47888999999999999999999997765 33333333222
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999999999999999998754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-17 Score=157.13 Aligned_cols=257 Identities=9% Similarity=-0.049 Sum_probs=186.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048830 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYA 236 (551)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 236 (551)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 44555556666666666666666655432 2244455555566666666666666666666553 234556666666666
Q ss_pred hcCCHHHHHHHHHhcCC--C-CHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048830 237 KCGNLDSAFCVFSRMRK--R-DVLSWNSM--------------IV-GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298 (551)
Q Consensus 237 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 298 (551)
..|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66666666666666542 1 12222222 22 3677888999999999988763 33667888888
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVE 375 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~ 375 (551)
..+...|++++|...++.+.+. .+.+...+..+...|...|++++|.+.+++++.. +..+|..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998764 2235678889999999999999999999875433 7889999999999999999
Q ss_pred HHHHHHHHHHhhcCC------------CcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 376 IGEIAMKNLVQLEAA------------SAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
+|...++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999 7889999999999999999999988643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=151.05 Aligned_cols=245 Identities=9% Similarity=-0.014 Sum_probs=202.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLDG--FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 239 (551)
|.-....|++..|+..+++.... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999999887543 3443 3556678899999999999976643 23567788899999999999
Q ss_pred CHHHHHHHHHhcC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 048830 240 NLDSAFCVFSRMR----KR-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 240 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566778888999999999999999987 456788889999999999999999999
Q ss_pred HHhHHhcCCCCCccc---hhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc
Q 048830 315 HMMVSRYNLKPGIKH---YGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 315 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 388 (551)
+.+.+. .|+... ...++..+...|++++|..+|++++. .++..|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 365321 12344555566999999999988543 399999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHhhhcCChhH-HHHHHHHHHhC
Q 048830 389 AASAGDYVLLATIYACTKDEEG-VARTRKLIKSN 421 (551)
Q Consensus 389 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 421 (551)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888888763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=154.83 Aligned_cols=364 Identities=8% Similarity=-0.052 Sum_probs=241.1
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCC------------CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcC---
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ------------NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMAS--- 83 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--- 83 (551)
....||.|-..|... |+.++|++.|++.. ....++|+.+...|...|++++|+..|++.....
T Consensus 50 ~a~~yn~Lg~~~~~~--G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLK--GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 456799999999999 99999999997531 2356789999999999999999999998876531
Q ss_pred --CCCC-ChhhHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhCCCHHHHHHHhccCCC---
Q 048830 84 --LSRP-DTFTFTFTLKACER--VKALNKCQELHGFVIRSGYERCVVVSTNLMRG---YAANGVIEAARSVFDNMPE--- 152 (551)
Q Consensus 84 --~~~p-d~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~~~~m~~--- 152 (551)
...+ ...++.....++.. .+++++|...|++.++.. +.++..+..+..+ +...++.++|++.|++..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1102 23456555555544 457899999999999875 4456666666555 3456777888888876543
Q ss_pred CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 048830 153 RDLVSWNSIISCYTQ----ASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVG 228 (551)
Q Consensus 153 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 228 (551)
.+..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 455667666655554 467889999999887653 4456678889999999999999999999999875 3356677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048830 229 NALVDMYAKC-------------------GNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286 (551)
Q Consensus 229 ~~li~~y~~~-------------------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (551)
..+..+|... +..+.|...|++.. ..+..+|..+...|...|++++|+..|++.....
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7777776432 23566777777654 3456788899999999999999999999998865
Q ss_pred CCCCHh--hHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhc---CCCCHHH
Q 048830 287 FHPDSI--TFLGLLC-GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS---SPSDPVL 360 (551)
Q Consensus 287 ~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~ 360 (551)
..|... .+..+.. ...+.|+.++|+..|++..+ +.|+....... ...+.++++++ -|.++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHH
Confidence 443321 2223322 34578999999999998874 55654322222 23333333332 3448899
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 361 WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 361 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
|..|...+...|++++|+..|+++++++|.+|.+...++
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999999888776554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-16 Score=149.78 Aligned_cols=273 Identities=11% Similarity=-0.029 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
+...|..+...+...|++++|+.+|+++....+ .+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 344566677777777788888888877777654 355666777777777777777777777777763 44556666666
Q ss_pred HHHHhCCCHHHHHHHhccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHH--HHHhcCCh
Q 048830 132 RGYAANGVIEAARSVFDNMPE--R-DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLS--SCAHVGAL 206 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~~~~ 206 (551)
..|...|++++|.+.|+++.+ | +...+..+... .|+......+.. .+...|++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 677777777777666665532 1 11122221000 011111111112 24455666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666553 22455666666666666777777666665542 345666677777777777777777777766
Q ss_pred HcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-------------CccchhhhhHHHhhcCCHHHHHHHH
Q 048830 284 MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-------------GIKHYGCLVDLYGRAGKLEKALEVI 350 (551)
Q Consensus 284 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~ 350 (551)
+.. +.+..++..+...+...|++++|...++.+.+. .| +...+..+..+|.+.|++++|..++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 642 234556666777777777777777777776543 22 2556677777777777777777777
Q ss_pred hhcC
Q 048830 351 NTSS 354 (551)
Q Consensus 351 ~~~~ 354 (551)
++++
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 6633
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.1e-14 Score=152.34 Aligned_cols=347 Identities=10% Similarity=0.050 Sum_probs=272.7
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~ 97 (551)
.+....|.|+....+. +........++...-+ ...+...+...|.+++|..+|++.. -.....+.++.
T Consensus 1020 ~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie 1087 (1630)
T 1xi4_A 1020 EHRNLQNLLILTAIKA---DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE 1087 (1630)
T ss_pred ccHHHHHHHHHHHHHh---ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 3456778888777776 3344444444443323 3457788899999999999999852 12233344433
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL 177 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 177 (551)
..+++++|.++.++. .++.+|..+..++.+.|++++|+..|.+. .|...|..++.++.+.|++++|++.
T Consensus 1088 ---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1088 ---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred ---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 668899999988755 35778899999999999999999999775 6778899999999999999999999
Q ss_pred HHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh
Q 048830 178 YERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL 257 (551)
Q Consensus 178 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 257 (551)
|...++.. ++....+.++.+|++.+++++...+. + .++...+..+.+.|...|++++|..+|... .
T Consensus 1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ 1222 (1630)
T 1xi4_A 1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----S 1222 (1630)
T ss_pred HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----h
Confidence 99877654 44333445889999999988654443 2 345667778999999999999999999985 5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
.|..+...|.+.|++++|++.+++. -+..+|..+..+|...|++..|...... +..++..+..++..|
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYY 1290 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHH
Confidence 8999999999999999999999986 3668999999999999999999887553 334666788999999
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhhcC-----CCcchHHHHHHHhhhcCC
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH--RNVEIGEIAMKNLVQLEA-----ASAGDYVLLATIYACTKD 407 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~ 407 (551)
.+.|.+++|+.+++.++.. ....|.-|...+.+. ++..++.+.|..-..+.| .++..|..+...|.+.|.
T Consensus 1291 e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999997766 566777777766654 566667777776655555 567789999999999999
Q ss_pred hhHHHH
Q 048830 408 EEGVAR 413 (551)
Q Consensus 408 ~~~a~~ 413 (551)
|+.|..
T Consensus 1371 ~dnA~~ 1376 (1630)
T 1xi4_A 1371 YDNAII 1376 (1630)
T ss_pred HHHHHH
Confidence 999984
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-17 Score=171.53 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=103.3
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIAC---EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR----KRDVLSWN 260 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~ 260 (551)
.-..||+++|++|++.|++++|.+++..|. +.|+.||..+||+||++|++.|++++|.++|++|. .||++|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 344678888888888888888888886655 34677888888888888888888888888888875 47888888
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------ccchhhh
Q 048830 261 SMIVGYGVHGRG-DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG------IKHYGCL 333 (551)
Q Consensus 261 ~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l 333 (551)
++|.++++.|+. ++|.++|++|.+.|+.||..||++++.++.+.+ .++..+++.. ++.|+ +.+...|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP--TFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC--CCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCc--ccCCCCCCcccccchHHH
Confidence 888888887774 677788888888888888888887776555543 3333333322 33332 4455566
Q ss_pred hHHHhhcC
Q 048830 334 VDLYGRAG 341 (551)
Q Consensus 334 i~~~~~~g 341 (551)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-17 Score=171.60 Aligned_cols=146 Identities=11% Similarity=0.005 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhh---hCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMR---FEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNAL 231 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 231 (551)
..+||+||.+|++.|+.++|.++|.+|. ..|+.||.+||++||.+|++.|++++|.++|++|.+.|+.||..+||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999998875 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HhhHHHHHHH
Q 048830 232 VDMYAKCGNL-DSAFCVFSRMR----KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD------SITFLGLLCG 300 (551)
Q Consensus 232 i~~y~~~g~~-~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~ 300 (551)
|+++++.|+. ++|.++|++|. .||.++|++++.+..+. .+++..+++ ..+..|+ ..|...|...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999984 78899999997 48999999998766553 444444444 3345554 4444555555
Q ss_pred HhccC
Q 048830 301 CSHQG 305 (551)
Q Consensus 301 ~~~~g 305 (551)
|++.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-15 Score=139.26 Aligned_cols=222 Identities=12% Similarity=0.011 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHH
Q 048830 157 SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV--ESVYVGNALVDM 234 (551)
Q Consensus 157 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~ 234 (551)
.|..+...+...|++++|+..|++..+.. ++...+..+..++...|++++|...+..+.+.... ++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 44555555555555555555555555443 44445555555555555555555555554442210 0000
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 048830 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
....+|..+...|...|++++|+..|+++... .|+. ..+...|++++|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00233444444444444444454444444442 2221 1233334455555555
Q ss_pred HHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 315 HMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 315 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+.+.. ..| +...+..+...+...|++++|.+.+++++.. +..+|..+...+...|++++|...++++++..|+
T Consensus 129 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 129 EAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 55433 122 3344455555555555555555555543322 4555555556666666666666666666666666
Q ss_pred CcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 391 SAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
++..+..++.+|...|++++|...+++..
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666666666666655544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.3e-15 Score=136.23 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HhhHHHH
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG--FHPD----SITFLGL 297 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~l 297 (551)
..+..+...|...|++++|...|++..+ .+..+|..+...|...|++++|+..+++..+.. ..|+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4555666667777777777777665432 556677777777888888888888888777632 1122 4778889
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcH
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNV 374 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~ 374 (551)
...+...|++++|...|+.+.+. .|+ ...+.+.|++++|.+.+++++.. +...|..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE---HRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---Cch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999764 344 35677889999999999985544 778889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 375 EIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
++|...++++++..|.++..+..++.+|...|++++|...++++.+..
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999987643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=136.36 Aligned_cols=194 Identities=14% Similarity=0.016 Sum_probs=150.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048830 222 VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLL 298 (551)
Q Consensus 222 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 298 (551)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667777888888888888888888887654 356788888888888899999999888888753 23456777788
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHH
Q 048830 299 CGCSHQ-----------GLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTL 364 (551)
Q Consensus 299 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 364 (551)
..+... |++++|...|++..+. .| +...+..+..+|...|++++|++.|++++.. ++..|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999988753 55 5677888999999999999999999885543 78889999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
..++...|++++|...++++++++|+++..+..++.++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-14 Score=133.58 Aligned_cols=240 Identities=10% Similarity=-0.081 Sum_probs=191.4
Q ss_pred hcCChHHHHHHHHHhhhCCc---ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 048830 167 QASFHLEALKLYERMRFEDV---GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 243 (551)
..|++++|+..|+++.+... +.+..++..+..++...|++++|...++.+++.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45788899999988887532 1245577788888889999999999999988875 3467888999999999999999
Q ss_pred HHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048830 244 AFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320 (551)
Q Consensus 244 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 320 (551)
|.+.|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998763 46788999999999999999999999999885 455555555556667789999999999888764
Q ss_pred cCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 321 YNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 321 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.+++... ..++..+...++.++|.+.+++++.. +..+|..+...+...|++++|...++++++.+|.+..
T Consensus 174 --~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2334333 44777888889999999999997776 2578889999999999999999999999999988755
Q ss_pred hHHHHHHHhhhcCChhHHHHHH
Q 048830 394 DYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889998887765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-14 Score=142.29 Aligned_cols=343 Identities=10% Similarity=0.003 Sum_probs=211.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKAL---NKCQELHGFVIRSGYERCVVVSTNLMRGYA 135 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 135 (551)
+...+.+.|++++|+.+|++..+.|. ++ .+..+...+...|+. ++|...|.+..+. ++..+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~--~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY--SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--CT--GGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC--HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 55667778888888888888877653 33 333455555566776 7888888887753 4445566666555
Q ss_pred hCC-----CHHHHHHHhccCCCC-ChhHHHHHHHHHHhcCChHH---HHHHHHHhhhCCcccCHHHHHHHHHHHHhcCCh
Q 048830 136 ANG-----VIEAARSVFDNMPER-DLVSWNSIISCYTQASFHLE---ALKLYERMRFEDVGLDGFTLVCLLSSCAHVGAL 206 (551)
Q Consensus 136 ~~g-----~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 206 (551)
..| +.++|...|++..++ +..++..|...|...+..++ +.+.+......| +......+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 554 677888888776543 44577778877777665443 444444444333 233444555666666644
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhc----CChHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCG---NLDSAFCVFSRMRK---RDVLSWNSMIVGYGVH----GRGDEAI 276 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 276 (551)
+++........+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444333333333222334447788888888888 88888888887643 3444446677766544 6888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcC-----CHHHHHH
Q 048830 277 SFFKQMLMAGFHPDSITFLGLLCG-C--SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAG-----KLEKALE 348 (551)
Q Consensus 277 ~~~~~m~~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 348 (551)
..|++.. .| +...+..|... + ...+++++|..+|++..+. | +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888876 33 44455555554 3 4578888888888888654 3 5566677777776 45 8888888
Q ss_pred HHhhcCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh----cCChhHHHHHHHHHHh
Q 048830 349 VINTSSPSDPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC----TKDEEGVARTRKLIKS 420 (551)
Q Consensus 349 ~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 420 (551)
+|+++.+.++..+..|...|.. ..+.++|...|+++.+. .++.....|+.+|.. ..+.++|...+++..+
T Consensus 309 ~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 309 HFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8888772288888888877766 34888888888887764 456778888888875 4578888888888877
Q ss_pred CCC
Q 048830 421 NGI 423 (551)
Q Consensus 421 ~g~ 423 (551)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-13 Score=124.60 Aligned_cols=253 Identities=13% Similarity=0.013 Sum_probs=165.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC--HHHHHHHHHHHH
Q 048830 127 STNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD--GFTLVCLLSSCA 201 (551)
Q Consensus 127 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~ 201 (551)
+......+.+.|++++|+..|++..+ .+..+|..+...|...|++++|+..|++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33455566667777777777666532 2344677777777777788888887777766332222 223667777777
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 048830 202 HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISF 278 (551)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 278 (551)
..|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.|++..+ .+...|..+...+...+++++|+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888777764 23567788888888888888888888888764 3556677666233344588888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC
Q 048830 279 FKQMLMAGFHPDSITFLGLLCGCSHQGL---VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP 355 (551)
Q Consensus 279 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 355 (551)
|+++.+.. +.+...+..+...+...|+ .++|...++++.+...-.|+.. - ..
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~-----------------~~------ 219 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K-----------------DE------ 219 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-----------------HH------
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-----------------HH------
Confidence 88887752 2234555566666666665 6666666666654322112210 0 00
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 356 SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 356 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
...+|..+...|...|++++|...++++++++|+++.+...+..+....+
T Consensus 220 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 -LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 12466778888888999999999999999999999988877766655544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-13 Score=125.21 Aligned_cols=224 Identities=13% Similarity=-0.008 Sum_probs=120.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGN 229 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 229 (551)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555666666666666666666666552 223444455555555 566666666666665543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 230 ALVDMYAK----CGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGV----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 230 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
.+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55566665 6666666666655432 244555555555555 566666666666665543 33444444455
Q ss_pred Hhc----cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh-
Q 048830 301 CSH----QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI- 370 (551)
Q Consensus 301 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~- 370 (551)
+.. .+++++|..+|++..+. .+...+..+..+|.. .+++++|.+.|++++.. +...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 544 55566666655555432 123344445555555 55555555555553333 44444455555554
Q ss_pred ---cCcHHHHHHHHHHHHhhcCC
Q 048830 371 ---HRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 371 ---~g~~~~a~~~~~~~~~~~p~ 390 (551)
.++.++|...++++.+++|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 55555555555555555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-14 Score=141.69 Aligned_cols=374 Identities=12% Similarity=-0.011 Sum_probs=250.0
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCCC-CChhhHHHHHHHHHcCCCh---hHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQN-PQTQAWNSLIRAFAQSLSP---LQAIFYYNHMLMASLSRPDTFTFTFTLKACER 101 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~ 101 (551)
+...+.+. |++++|.++|.+..+ .+..++..|...|...|++ ++|+..|++.... +...+..+...+..
T Consensus 9 la~~~~~~--g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKR--GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHh
Confidence 56667778 999999999987643 3566677777777788888 8999999998754 33445555553444
Q ss_pred cC-----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH---HHHhccCCC-CChhHHHHHHHHHHhcCChH
Q 048830 102 VK-----ALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAA---RSVFDNMPE-RDLVSWNSIISCYTQASFHL 172 (551)
Q Consensus 102 ~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A---~~~~~~m~~-~~~~~~~~li~~~~~~g~~~ 172 (551)
.+ +.++|...+.+..+.|.. ..+..|..+|...+..+.+ .+.+....+ .+...+..|...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 43 788999999999987632 2566788888877665443 333333322 45678888888898888665
Q ss_pred HHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHH
Q 048830 173 EALKLYERMRFEDVGLDGFTLVCLLSSCAHVG---ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC----GNLDSAF 245 (551)
Q Consensus 173 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~ 245 (551)
++........+.-...+...+..+...|...| +.++|...+....+.| .++...+..|..+|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 55444333222111222237777888888889 8999999999999987 34555557788888665 7999999
Q ss_pred HHHHhcCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC-----CHHHHHHHHHHh
Q 048830 246 CVFSRMRKRDVLSWNSMIVG-Y--GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG-----LVEEGVEYFHMM 317 (551)
Q Consensus 246 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~ 317 (551)
+.|++....++.++..+... | ...+++++|+..|++..+.| +...+..|...|. .| ++++|..+|++.
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 99998884467788888877 4 56899999999999999877 5666667777776 45 999999999987
Q ss_pred HHhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhc
Q 048830 318 VSRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 318 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 388 (551)
. .-+...+..|..+|.. ..++++|..+|+++... ++.....|...|.. ..|.++|...++++.+.+
T Consensus 314 a-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 V-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred h-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 4 3366777788888876 45999999999997777 77788888888764 568999999999999887
Q ss_pred CCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 389 AASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 389 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+.........+......++.++|..+.++-+
T Consensus 389 ~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 389 TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5543333333333333445666666665543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-13 Score=124.69 Aligned_cols=223 Identities=16% Similarity=0.077 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCHhHHHHHH
Q 048830 189 DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK----CGNLDSAFCVFSRMRK-RDVLSWNSMI 263 (551)
Q Consensus 189 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 263 (551)
+..++..+...+...|++++|...++...+. .+...+..+..+|.. .|++++|.+.|++..+ .++.++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556777888889999999999999999983 356788889999999 9999999999998764 4788899999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 264 VGYGV----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH----QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 264 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888889998 99999999999999874 3 5667788888
Q ss_pred HHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh--
Q 048830 336 LYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC-- 404 (551)
Q Consensus 336 ~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 404 (551)
+|.. .+++++|.+.|++++.. ++..+..+...+.. .+++++|...++++++.+| +..+..++.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999997766 88899999999999 9999999999999999876 7789999999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 048830 405 --TKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 405 --~g~~~~a~~~~~~m~~~g~ 423 (551)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=124.52 Aligned_cols=195 Identities=13% Similarity=-0.020 Sum_probs=116.3
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 048830 51 PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNL 130 (551)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 130 (551)
++...|..+...+.+.|++++|+..|++..+..+ .+...+..+..++.+.|++++|...+++.++.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4556677777777778888888888887777664 356677777777777788888888887777764 4456667777
Q ss_pred HHHHHhC-----------CCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHH
Q 048830 131 MRGYAAN-----------GVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCL 196 (551)
Q Consensus 131 i~~y~~~-----------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 196 (551)
..+|.+. |++++|+..|++..+ .+..+|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 7777766 666666666655432 234556666666666666666666666665544 455555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
..++...|++++|...++.+++.. +.+..++..+..+|.+.|++++|.+.|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665543 223455555556666666666666555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=127.46 Aligned_cols=195 Identities=13% Similarity=-0.008 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 301 (551)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555566666666666666666665542 345566666666667777777777777666542 22445566666666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
...|++++|..+++.+.+ .+..| +...+..+..+|...|++++|.+.+++++.. +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776654 12334 3455666666777777777777776664332 566677777777777777777
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 378 EIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
...++++++..|.++..+..++.+|...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777776553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=136.32 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHH
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGR--------------------GDEAIS 277 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 277 (551)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444555555555555555555554432 11 2355555566666666 666666
Q ss_pred HHHHHHHc----CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHH
Q 048830 278 FFKQMLMA----GFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALE 348 (551)
Q Consensus 278 ~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 348 (551)
.+++.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66654431 11111 234566666677777777777777766543211111 2356667777777777777777
Q ss_pred HHhhcCCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHHHHHHHhhhcCChhHHHH
Q 048830 349 VINTSSPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 349 ~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
.+++++.. ...++..+...+...|++++|...+++++++.+.. +.++..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77664432 15567777778888888888888888887764432 4567788888888888888888
Q ss_pred HHHHHHh
Q 048830 414 TRKLIKS 420 (551)
Q Consensus 414 ~~~~m~~ 420 (551)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=138.64 Aligned_cols=195 Identities=12% Similarity=0.012 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCHhHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK---------RDVLSWNSMIVGYGVHGR-----------------GDEAISFF 279 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 279 (551)
.++..+...|...|++++|...|++..+ ....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444455555555555555555544331 012345555555666666 66666666
Q ss_pred HHHHHc----CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHH
Q 048830 280 KQMLMA----GFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVI 350 (551)
Q Consensus 280 ~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 350 (551)
++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 554431 11111 235556666677777777777777766543211111 225667777777778877777777
Q ss_pred hhcCCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHHHHHHHhhhcCChhHHHHHH
Q 048830 351 NTSSPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVLLATIYACTKDEEGVARTR 415 (551)
Q Consensus 351 ~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 415 (551)
++++.. ...++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 664433 25677778888888889999998888888765332 447888999999999999999999
Q ss_pred HHHHh
Q 048830 416 KLIKS 420 (551)
Q Consensus 416 ~~m~~ 420 (551)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-13 Score=122.97 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 301 (551)
..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|...|+++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44555566666666666666666665432 345566666666667777777777777666642 23455666666667
Q ss_pred hcc-CCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 302 SHQ-GLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 302 ~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
... |++++|...++.+.+ .+..| +...+..+..+|...|++++|.+.+++++.. +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777777654 22333 2455666677777777777777777653332 66777777777777888888
Q ss_pred HHHHHHHHHhhcC-CCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 377 GEIAMKNLVQLEA-ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 377 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|...++++++..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888777 7777777777777888888888877777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-13 Score=123.65 Aligned_cols=208 Identities=13% Similarity=-0.061 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDM 234 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 234 (551)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 4556677777777777777777777766532 2234445555555555555555555555555442 1
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHH
Q 048830 235 YAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEY 313 (551)
Q Consensus 235 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 313 (551)
.+...|..+...|...|++++|+.+|+++...+..|+ ...+..+...+...|++++|...
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334444455555555555555555555544222332 34455555566666666666666
Q ss_pred HHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
++++.+. .+.+...+..+..+|...|++++|.+.+++++.. +...+..+...+...|+.++|...++++++..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666543 1123555666677777777777777777664433 6777778888888899999999999999999998
Q ss_pred CcchHHH
Q 048830 391 SAGDYVL 397 (551)
Q Consensus 391 ~~~~~~~ 397 (551)
++.....
T Consensus 242 ~~~~~~~ 248 (252)
T 2ho1_A 242 SLEYQEF 248 (252)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 8765543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-13 Score=125.33 Aligned_cols=242 Identities=9% Similarity=-0.075 Sum_probs=173.1
Q ss_pred HcCCChhHHHHHHHHHHHcCCCC--CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 048830 64 AQSLSPLQAIFYYNHMLMASLSR--PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIE 141 (551)
Q Consensus 64 ~~~g~~~~A~~l~~~m~~~~~~~--pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 141 (551)
...|++++|+..|+++....... .+..++..+...+...|++++|...+..+++.. +.+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 34577888888888887764210 134567777888888888888888888888774 456778888888888888888
Q ss_pred HHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 142 AARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACE 218 (551)
Q Consensus 142 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 218 (551)
+|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888887654 35678888888999999999999999988764 45555555555666777899999999988777
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048830 219 MGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD-------VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS 291 (551)
Q Consensus 219 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 291 (551)
.. +++...+ .++..+...++.++|.+.+.+..+.+ ..+|..+...|...|++++|...|++.... .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 64 3344444 36777788888888888888877542 466777788888888888888888888764 3433
Q ss_pred hhHHHHHHHHhccCCHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
. .....++...|++++|...+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 2 22234555666666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=132.58 Aligned_cols=244 Identities=10% Similarity=0.031 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
..+|+.+...+.+.|++++|+..|++..+.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4568888888888999999999999887642 2345677778888888886 999999999998875 336788888999
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cCCHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSH-QGLVEE 309 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~ 309 (551)
+|.+.|++++|...|+++.+ .+..+|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998763 577889999999999999999999999999863 3356778888888888 566567
Q ss_pred H-----HHHHHHhHHhcCCCC-CccchhhhhHHHhhcC--CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC------
Q 048830 310 G-----VEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAG--KLEKALEVINTSSPS---DPVLWRTLLGSCKIHR------ 372 (551)
Q Consensus 310 a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g------ 372 (551)
| +..|++.++ +.| +...|..+..+|...| ++++|.+.+.+ ++. +...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~-~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD-LQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH-HTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHH-hccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6 477887764 456 5678888888888888 68899988887 433 7788888888888764
Q ss_pred ---cHHHHHHHHHHH-HhhcCCCcchHHHHHHHhhhc
Q 048830 373 ---NVEIGEIAMKNL-VQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 373 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 405 (551)
..++|..+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999888888877766543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-14 Score=128.72 Aligned_cols=145 Identities=12% Similarity=0.017 Sum_probs=76.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
..+|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3444444444555555555555555554432 223344444555555555555555555555432 1123444555555
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
.|.+.|++++|.+.+++++.. +..+|..+...+...|++++|...++++++++|+++..+..+..+..
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 555555555555555543222 55566666666667777777777777777777776666655544433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=131.28 Aligned_cols=259 Identities=12% Similarity=0.032 Sum_probs=163.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCcccC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCC-chhHHHH
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDVGLD-----GFTLVCLLSSCAHVGALNMGIFLHRIACEM----GFVE-SVYVGNA 230 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~ 230 (551)
....+...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...+..+.+. +..+ ...++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444455555555555555554431 22 133444455555555555555555544332 1111 1345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGR--------------------GDEAISFFKQ 281 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 281 (551)
+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666666666666666665432 11 2356666666777777 7777777766
Q ss_pred HHHc----CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 282 MLMA----GFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 282 m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 11111 245666777777888888888888777643211111 33677778888888888888888877
Q ss_pred cCCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHHHHHHHhhhcCChhHHHHHHHH
Q 048830 353 SSPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 353 ~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
++.. ...++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4433 25677788888999999999999999998875432 44788899999999999999999998
Q ss_pred HHhC
Q 048830 418 IKSN 421 (551)
Q Consensus 418 m~~~ 421 (551)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=127.53 Aligned_cols=196 Identities=10% Similarity=0.073 Sum_probs=155.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 299 (551)
.....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.... +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677788888999999999999988754 467888899999999999999999999998863 346678888999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
.+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.+++++.. +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999764 2336778889999999999999999999885533 88899999999999999999
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
|...++++++..|.++..+..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=137.45 Aligned_cols=294 Identities=11% Similarity=0.000 Sum_probs=180.1
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCCHHHHHHHhccCCC-----C----
Q 048830 87 PDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC----VVVSTNLMRGYAANGVIEAARSVFDNMPE-----R---- 153 (551)
Q Consensus 87 pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~---- 153 (551)
+....+......+...|++++|...++.+++.. +.+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344556667777888889999999998888874 223 34677777888888888888887766432 1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcc-cC----HHHHHHHHHHHHhcCC--------------------hHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVG-LD----GFTLVCLLSSCAHVGA--------------------LNM 208 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~~~--------------------~~~ 208 (551)
...+|..+...|...|++++|+..|.+..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2345667777777777777777777766542100 11 2244445555555555 444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR--DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG 286 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 286 (551)
|...+....+. +.....+ ...++..+...|...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444443321 1111000 12345555556666666666666666554321
Q ss_pred C-CCC----HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC-
Q 048830 287 F-HPD----SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSPS- 356 (551)
Q Consensus 287 ~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 356 (551)
. .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++++..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 125556666666677777777766666532111111 445666777777777777777777664432
Q ss_pred --------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC------CCcchHHHHHHHhhhcCChh
Q 048830 357 --------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA------ASAGDYVLLATIYACTKDEE 409 (551)
Q Consensus 357 --------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 409 (551)
...++..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 256777888888899999999999999887642 23557778888888888764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=133.39 Aligned_cols=224 Identities=11% Similarity=0.038 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 048830 191 FTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN-LDSAFCVFSRMRK---RDVLSWNSMIVGY 266 (551)
Q Consensus 191 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 266 (551)
..|..+..++...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|++.|+++.+ .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 466777788889999999999999999975 3467899999999999997 9999999998864 4778999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhh-cCCHH
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGR-AGKLE 344 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 344 (551)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..|+++++. .| +...|..+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999863 335688899999999999999999999999863 55 67889999999999 66657
Q ss_pred HH-----HHHHhhcCCC---CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC--------
Q 048830 345 KA-----LEVINTSSPS---DPVLWRTLLGSCKIHR--NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK-------- 406 (551)
Q Consensus 345 ~A-----~~~~~~~~~~---~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 406 (551)
+| ++.|++++.. +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777765543 8999999999999988 689999999998 889999999999999999975
Q ss_pred -ChhHHHHHHHHH-Hh
Q 048830 407 -DEEGVARTRKLI-KS 420 (551)
Q Consensus 407 -~~~~a~~~~~~m-~~ 420 (551)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 55
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-13 Score=124.05 Aligned_cols=220 Identities=11% Similarity=-0.022 Sum_probs=137.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCC
Q 048830 198 SSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD----VLSWNSMIVGYGVHGR 271 (551)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~ 271 (551)
..+...|++++|...++.+++.. +.+...+..+..+|...|++++|.+.|++..+ ++ ..+|..+...|...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 34444444455555444444432 12233455555555555666666555555432 11 2235666666666677
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHH
Q 048830 272 GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVI 350 (551)
Q Consensus 272 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 350 (551)
+++|+..|++..+.. +.+..++..+...+...|++++|...|++..+ ..| +...+..+...+...+++++|.+.|
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666642 22345666667777777777777777776643 344 4455555552333344777777777
Q ss_pred hhcCCC---CHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhhc---CCC-----cchHHHHHHHhhhcCChhHHHHHHH
Q 048830 351 NTSSPS---DPVLWRTLLGSCKIHRN---VEIGEIAMKNLVQLE---AAS-----AGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 351 ~~~~~~---~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
++++.. +...+..+...+...|+ .++|...++++++.. |+. ...|..++.+|...|++++|.+.++
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 664433 56677777777777777 777888888888775 432 2578889999999999999999999
Q ss_pred HHHhCC
Q 048830 417 LIKSNG 422 (551)
Q Consensus 417 ~m~~~g 422 (551)
++.+..
T Consensus 246 ~al~~~ 251 (272)
T 3u4t_A 246 NILALD 251 (272)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=117.10 Aligned_cols=201 Identities=14% Similarity=-0.039 Sum_probs=125.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhc-
Q 048830 194 VCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDVLSWNSMIVGYGVH- 269 (551)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~- 269 (551)
..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++. ..+..+|..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 333344444444444444444444432 1234445555555555555555555555543 23455566666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHH
Q 048830 270 GRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKAL 347 (551)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 347 (551)
|++++|+..++++.+.+..|+ ...+..+..++...|++++|...++.+.+. .| +...+..+..+|.+.|++++|.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 777777777776666222333 355666666777777777777777776543 23 4566677777777777777777
Q ss_pred HHHhhcC---C-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 348 EVINTSS---P-SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 348 ~~~~~~~---~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
+.+++++ | .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 7776633 3 4667777777888889999999999999999999988766554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-12 Score=114.24 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=116.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhh
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 334 (551)
++..|..+...|...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34556666666666666666666666666542 223455666666667777777777777666542 122345555666
Q ss_pred HHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHH
Q 048830 335 DLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 411 (551)
..+...++++.|.+.+.+++. .+...+..+...+...|++++|+..++++++++|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 667777777777777665332 27778888888888888999999999999999999988999999999999999999
Q ss_pred HHHHHHHHhC
Q 048830 412 ARTRKLIKSN 421 (551)
Q Consensus 412 ~~~~~~m~~~ 421 (551)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9998887653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-13 Score=133.05 Aligned_cols=268 Identities=14% Similarity=0.029 Sum_probs=157.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhCCCHHHHHHHhccCCC---------CChhH
Q 048830 91 TFTFTLKACERVKALNKCQELHGFVIRSGYERCV----VVSTNLMRGYAANGVIEAARSVFDNMPE---------RDLVS 157 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~~ 157 (551)
.+..+...+...|++++|...++.+++.. +.+. .++..+...|...|++++|...|++..+ ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445555666777777777777777653 2222 3556666666666676666666655432 12234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHH
Q 048830 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-VESVYVGNALVDMYA 236 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~ 236 (551)
|..+...|...|++++|+..|++..+... +.+- .....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 55555566666666666666655433200 0000 111233444444555
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC
Q 048830 237 KCGN-----------------LDSAFCVFSRMRK-------R--DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HP 289 (551)
Q Consensus 237 ~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 289 (551)
..|+ +++|.+.|++..+ + ...+|..+...|...|++++|+..|++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 4555444444321 0 123556666666777777777777766654210 01
Q ss_pred C----HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----
Q 048830 290 D----SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP----GIKHYGCLVDLYGRAGKLEKALEVINTSSPS----- 356 (551)
Q Consensus 290 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 356 (551)
+ ..++..+...+...|++++|...+++..+...-.. ...++..+..+|...|++++|.+.+++++..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 12566677777777777777777777654311111 1456677778888888888888888774443
Q ss_pred ----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 357 ----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 357 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
...++..+...+...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2457778888899999999999999999887643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-12 Score=123.87 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHhccCChHHHHHHHHHHHHh----CCCC-ChhH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD----TFTFTFTLKACERVKALNKCQELHGFVIRS----GYER-CVVV 126 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~ 126 (551)
+......+...|++++|+..|+++....+ .+ ...+..+...+...|++++|...+.+..+. +..+ ...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34444556666667777776666666542 12 234555556666666666666666655432 1111 1223
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcc
Q 048830 127 STNLMRGYAANGVIEAARSVFDN 149 (551)
Q Consensus 127 ~~~li~~y~~~g~~~~A~~~~~~ 149 (551)
+..+...|...|++++|...|++
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~ 108 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQR 108 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHH
Confidence 34444444444444444444433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.8e-12 Score=124.20 Aligned_cols=225 Identities=10% Similarity=0.081 Sum_probs=119.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC----Cccc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--C----CCchhHHH
Q 048830 161 IISCYTQASFHLEALKLYERMRFE----DVGL-DGFTLVCLLSSCAHVGALNMGIFLHRIACEMG--F----VESVYVGN 229 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~ 229 (551)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|++++|...+.++.+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556667777777777666542 1111 22355556666666666666666666655431 0 01134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHP-DSITFL 295 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~ 295 (551)
.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666667777777777766665442 11 135666666677777777777777666551 2212 234566
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCC--C-CccchhhhhHHHhhcCC---HHHHHHHHhhcCCC---CHHHHHHHHH
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSRYNLK--P-GIKHYGCLVDLYGRAGK---LEKALEVINTSSPS---DPVLWRTLLG 366 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~ll~ 366 (551)
.+...+...|++++|...+++..+...-. | ....+..+...|...|+ +++|..++++ ... ....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES-KMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 66666666777777776666655421110 1 11223445555555555 5555555555 332 2233444444
Q ss_pred HHHhcCcHHHHHHHHHHHHh
Q 048830 367 SCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~ 386 (551)
.|...|++++|...++++++
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 44444455554444444444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=133.75 Aligned_cols=204 Identities=12% Similarity=0.019 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNL-DSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
+++...+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+..+|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 23566667777777777777 777777776542 35677888888888888888888888888
Q ss_pred HHcCCCCCHhhHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc--------CCHH
Q 048830 283 LMAGFHPDSITFLGLLCGCSHQ---------GLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA--------GKLE 344 (551)
Q Consensus 283 ~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~ 344 (551)
.+. .|+...+..+...+... |++++|...|+++.+. .| +...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 774 46677777888888888 8888888888888753 34 567788888888888 8889
Q ss_pred HHHHHHhhcCC------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 345 KALEVINTSSP------SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 345 ~A~~~~~~~~~------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
+|.+.|++++. .+...|..+..+|...|++++|...++++++++|+++.++..++.++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99888887543 3788999999999999999999999999999999999999999999999999999987654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=127.63 Aligned_cols=224 Identities=12% Similarity=0.001 Sum_probs=175.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----HhHHH
Q 048830 196 LLSSCAHVGALNMGIFLHRIACEM----GFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----RD-----VLSWN 260 (551)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 260 (551)
....+...|++++|...+..+.+. +-.+ ...++..+...|...|++++|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677899999999999999874 2122 346788999999999999999999887652 22 35788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-Cccchh
Q 048830 261 SMIVGYGVHGRGDEAISFFKQMLMAGF-HPD----SITFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKP-GIKHYG 331 (551)
Q Consensus 261 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~ 331 (551)
.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999876311 112 2478889999999999999999999987621 2213 466788
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCC-----C---HHHHHHHHHHHHhcCc---HHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPS-----D---PVLWRTLLGSCKIHRN---VEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
.+...|.+.|++++|.+.+++++.. + ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886653 2 2235667788888898 77777777665 233445668889999
Q ss_pred HhhhcCChhHHHHHHHHHHh
Q 048830 401 IYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~ 420 (551)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-13 Score=127.19 Aligned_cols=241 Identities=14% Similarity=0.022 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhC-------CcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CC
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMRFE-------DVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM------GF 221 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~ 221 (551)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456888888899999999999999888762 22333456677777788888888888888877764 22
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 048830 222 -VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA---- 285 (551)
Q Consensus 222 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 285 (551)
+....++..+...|...|++++|.+.|++..+ ....++..+...|...|++++|+.+|+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22355667777777777787777777776542 12345666666777777777777777776653
Q ss_pred --CCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC
Q 048830 286 --GFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRY------NLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS 356 (551)
Q Consensus 286 --g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 356 (551)
+-.|+ ..++..+...+...|++++|..+++++.+.. ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 11222 2355566666677777777777776665421 01111111100
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
....+..+...+...+.+.++...+++.....|..+.++..++.+|...|++++|.+++++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111122222233334444445555555555555555666666666666666666666665553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=111.94 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=133.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
++.+|..|...|.+.|++++|.+.|++..+ .++.+|..+...|...|++++|+..+++..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788888888888888888888887653 467788888888888888888888888887753 3345666677778
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
+...++++.|...+....+. .| +...+..+..+|.+.|++++|++.|++++.. +..+|..+..++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888999999988888653 34 5677888888999999999999988875433 88899999999999999999
Q ss_pred HHHHHHHHHhhcCCCc
Q 048830 377 GEIAMKNLVQLEAASA 392 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~ 392 (551)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=124.38 Aligned_cols=240 Identities=13% Similarity=0.033 Sum_probs=169.8
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHhccCCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhC------
Q 048830 122 RCVVVSTNLMRGYAANGVIEAARSVFDNMPE--------R---DLVSWNSIISCYTQASFHLEALKLYERMRFE------ 184 (551)
Q Consensus 122 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 184 (551)
.+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3456788899999999999999999988754 1 2456888999999999999999999998764
Q ss_pred Cc-ccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 048830 185 DV-GLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM------GFVE-SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--- 253 (551)
Q Consensus 185 ~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--- 253 (551)
+- .....++..+...+...|++++|...+..+.+. +..| ...++..+...|...|++++|.+.|+++.+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 233557888889999999999999999998875 2223 356788899999999999999999988643
Q ss_pred ----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 254 ----R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-------FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 254 ----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
+ ...++..+...|...|++++|...|+++.+.. ..|.........
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-------------------- 244 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA-------------------- 244 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH--------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH--------------------
Confidence 1 24578889999999999999999999998741 111111111111
Q ss_pred HhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 319 SRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
..+..+...+...+.+.+|...+...... +..+|..+..+|...|++++|...+++++++.|.
T Consensus 245 ---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 ---------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ---------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11222233334445555555555553333 6677888889999999999999999999888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-10 Score=118.88 Aligned_cols=403 Identities=7% Similarity=-0.059 Sum_probs=273.7
Q ss_pred CCCccHHHHHHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCC---hhHHHHHHHHHHHcCCCCCChh
Q 048830 17 QAHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLS---PLQAIFYYNHMLMASLSRPDTF 90 (551)
Q Consensus 17 ~~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~pd~~ 90 (551)
+.|...|..++..+.+. +.++.|+.+|+++. +.....|...+..-.+.|+ ++.+..+|++.+...+..|+..
T Consensus 63 p~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 46888999999999998 99999999999875 4567789999998888898 9999999999987763226777
Q ss_pred hHHHHHHHHhccCCh--------HHHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHHh---------CCCHHHHHHHhccC
Q 048830 91 TFTFTLKACERVKAL--------NKCQELHGFVIR-SGY-ERC-VVVSTNLMRGYAA---------NGVIEAARSVFDNM 150 (551)
Q Consensus 91 ~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~~---------~g~~~~A~~~~~~m 150 (551)
.|..-+....+.++. +...++|+..+. .|. .++ ...|...+..... .++++.+.++|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 777666655444443 344577777665 365 454 4678777766543 34577899999887
Q ss_pred CC-CC---hhHHH---HHHHHH----------HhcCChHHHHHHHHHhhh--CCc----c-----------c-----CH-
Q 048830 151 PE-RD---LVSWN---SIISCY----------TQASFHLEALKLYERMRF--EDV----G-----------L-----DG- 190 (551)
Q Consensus 151 ~~-~~---~~~~~---~li~~~----------~~~g~~~~A~~~~~~m~~--~~~----~-----------p-----~~- 190 (551)
.. |. ..+|. .+...+ -...+++.|...+.++.. .++ + | +.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 65 31 12332 222111 001223344455544321 111 0 1 00
Q ss_pred --HHHHHHHHHHHhcC-------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CCHh
Q 048830 191 --FTLVCLLSSCAHVG-------ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAF-CVFSRMRK---RDVL 257 (551)
Q Consensus 191 --~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~ 257 (551)
..|...+.---..+ ..+.+..+|++++..- +.+..+|-..+..+...|+.++|. ++|++... .+..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~ 379 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH
Confidence 12222222211111 1234556788777753 446778888888888889988896 89887653 3556
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCCC------------HhhHHHHHHHHhccCCHHHHHHHHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAG---------FHPD------------SITFLGLLCGCSHQGLVEEGVEYFHM 316 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~ 316 (551)
.|-..+....+.|++++|.++|+++.... -.|+ ...|...+....+.|.++.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67888888889999999999999988641 0132 23567777777788899999999999
Q ss_pred hHHhcCCCCCccchhhhhHHHhhcC-CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC--
Q 048830 317 MVSRYNLKPGIKHYGCLVDLYGRAG-KLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA-- 390 (551)
Q Consensus 317 ~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-- 390 (551)
+.+.. -.+....|...+.+-.+.| +.+.|.++|+.++.. +...|...+......|+.+.|..+|++++...|+
T Consensus 460 A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 97641 1123344444444444544 589999999887765 8888888998888899999999999999998873
Q ss_pred -CcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 391 -SAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 391 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
....|...+..-.+.|..+.+.++.+++.+.-.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456788888888889999999999999976543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-11 Score=112.86 Aligned_cols=183 Identities=8% Similarity=-0.028 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 207 NMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-DVL-SWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
++|..+++..++.-.+.+...|..++..+.+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56666666666521122344666666666666666666666666543 2 232 5666666666666677777777666
Q ss_pred HHcCCCCCHhhHHHHHHHH-hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----
Q 048830 283 LMAGFHPDSITFLGLLCGC-SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS----- 356 (551)
Q Consensus 283 ~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 356 (551)
.+.. +++...|....... ...|++++|..+|+..++.. +-+...|..++..+.+.|++++|..+|++++..
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 6542 22233333222221 12566666766666665431 124555666666666666666666666664431
Q ss_pred --CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 357 --DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 357 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
....|..++......|+.+.|..+++++++..|+++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 345666666666666666666666666666666544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-12 Score=134.54 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=120.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-Cccchhhh
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCL 333 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 333 (551)
..+|+.+...|.+.|++++|++.|++..+. .|+ ..++..+..+|.+.|++++|+..|++.++ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 455666666777777777777777776664 343 45666777777777777777777777664 345 35667777
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
..+|...|++++|++.|++++.. +...|..+..++...|++++|+..|+++++++|+++.++..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 77777777777777777765543 778888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 048830 411 VARTRKLIK 419 (551)
Q Consensus 411 a~~~~~~m~ 419 (551)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-10 Score=109.70 Aligned_cols=258 Identities=12% Similarity=0.007 Sum_probs=152.1
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-Cc----hhHHHHHHH
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLDGF----TLVCLLSSCAHVGALNMGIFLHRIACEMGFV-ES----VYVGNALVD 233 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 233 (551)
..+...|++++|...+++........+.. .+..+...+...|++++|...+.+..+.... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445556666666655554432111111 2333444455556666666666555442100 01 123455666
Q ss_pred HHHhcCCHHHHHHHHHhcCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHhhHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK----------R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH--P--DSITFLGLL 298 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 298 (551)
.|...|++++|.+.+++..+ + ...++..+...+...|++++|...+++....... | ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66777777777766665431 1 1234555666777777777777777776653211 1 123456666
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCccchh-----hhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG-----CLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLG 366 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~ 366 (551)
..+...|++++|...+++......-......+. ..+..+...|++++|...++++... ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 677777888888888777754311111111111 2234466788888888888775543 1234566777
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCC------cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+...|++++|...++++++..+.. ...+..++.++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888888888888887754321 23677788889999999999998887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-10 Score=109.24 Aligned_cols=215 Identities=9% Similarity=0.029 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 048830 70 LQAIFYYNHMLMASLSRPDTFTFTFTLKACE-------RVKAL-------NKCQELHGFVIRSGYERCVVVSTNLMRGYA 135 (551)
Q Consensus 70 ~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 135 (551)
++|+.+|++.+...+ .+...|......+. ..|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 466667777666543 34455555555543 23554 666666666665211234445666666666
Q ss_pred hCCCHHHHHHHhccCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHH-HhcCChHHHH
Q 048830 136 ANGVIEAARSVFDNMPE--R-DLV-SWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSC-AHVGALNMGI 210 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~ 210 (551)
+.|++++|..+|++..+ | +.. +|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666665543 2 222 56666666666666666666666655432 12222222111111 1134555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 048830 211 FLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAG-FHP 289 (551)
Q Consensus 211 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 289 (551)
.+++.+++.. + .+...|..++..+.+.|+.++|..+|++..... +.|
T Consensus 190 ~~~~~al~~~-p-------------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 190 KIFELGLKKY-G-------------------------------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHHHHHHHH-T-------------------------------TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHHHHhC-C-------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5555444432 1 234444445555555555555555555555431 233
Q ss_pred C--HhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 290 D--SITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 290 ~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
+ ...|..++......|+.+.|..+++++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 23444444444555555555555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=119.81 Aligned_cols=224 Identities=10% Similarity=0.059 Sum_probs=110.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCc-ccC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-----CC-chhHHH
Q 048830 161 IISCYTQASFHLEALKLYERMRFEDV-GLD----GFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-----VE-SVYVGN 229 (551)
Q Consensus 161 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~-~~~~~~ 229 (551)
....+...|++++|+..|++..+... .+| ..++..+..++...|+++.|...+..+.+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 33445566777777777776654311 122 23455566666666777777666666554210 11 133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHhhHHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHPDSITFLG 296 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 296 (551)
.+..+|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 566666666666666666655432 11 234555555666666666666666655541 11112344555
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC---ccchhhhhHHHhhcCC---HHHHHHHHhhcCCC---CHHHHHHHHHH
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPG---IKHYGCLVDLYGRAGK---LEKALEVINTSSPS---DPVLWRTLLGS 367 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~ll~~ 367 (551)
+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +++|...+++ ... ....+..+...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHH
Confidence 555566666666666666655543211111 1223333444444444 4445444444 222 22223333344
Q ss_pred HHhcCcHHHHHHHHHHHH
Q 048830 368 CKIHRNVEIGEIAMKNLV 385 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~ 385 (551)
|...|++++|...+++++
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 444444444444444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-11 Score=105.11 Aligned_cols=162 Identities=12% Similarity=-0.026 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGC 301 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 301 (551)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555666677777777777777776654 245566666666666666766666666666542 22344555555555
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
...|++++|...++.+.+. . |.+...|..+...+...|++++|...+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~---~------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA---N------------------------------PINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH---C------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc---C------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 5556666666655555432 1 114555566666666667777777777
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 382 KNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 382 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+++++..|.++..+..++.+|...|++++|...++++.+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-09 Score=107.54 Aligned_cols=219 Identities=14% Similarity=-0.004 Sum_probs=103.8
Q ss_pred HHHhcCChHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C-----CHhHHHHHH
Q 048830 199 SCAHVGALNMGIFLHRIACEMGF-VE----SVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----R-----DVLSWNSMI 263 (551)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li 263 (551)
.+...|++++|...+..+.+... .+ ...++..+...|...|+++.|...+.+..+ + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455566666665555554210 01 133455555556666665555555554321 1 123455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCCccchhhhhH
Q 048830 264 VGYGVHGRGDEAISFFKQMLMA----GFHP-DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKPGIKHYGCLVD 335 (551)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~ 335 (551)
..|...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+++..+.. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 5555666666666655555431 1011 11344555555555666666665555554311 11112444555555
Q ss_pred HHhhcCCHHHHHHHHhhcCCC--------CHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 336 LYGRAGKLEKALEVINTSSPS--------DPVLWRTLLGSCKIHRN---VEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
.|.+.|++++|.+.+++++.. ....+..+...+...++ .++|...+++. ...|.....+..++..|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 566666666666555543321 12233334444444555 44444444431 1112223344555666666
Q ss_pred cCChhHHHHHHHHH
Q 048830 405 TKDEEGVARTRKLI 418 (551)
Q Consensus 405 ~g~~~~a~~~~~~m 418 (551)
.|++++|...+++.
T Consensus 349 ~g~~~~A~~~~~~a 362 (378)
T 3q15_A 349 SCHFEQAAAFYRKV 362 (378)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 66666665555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-11 Score=102.72 Aligned_cols=169 Identities=16% Similarity=0.112 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGY 266 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 266 (551)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3466777888899999999999999887654 34678889999999999999999999998753 4678899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHH
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 346 (551)
...|++++|...++++.... +.+...+..+...+...|++++|..+++.+.+. .|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~--------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP--------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc---------------------
Confidence 99999999999999998863 445677777888888888888888888887653 12
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 347 LEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 347 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
.+...+..+...+...|++++|...++++++..|+++.
T Consensus 142 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 ---------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred ---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 23445556666666677777777777777777766554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-11 Score=120.86 Aligned_cols=210 Identities=10% Similarity=-0.049 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH-HHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 105 LNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVI-EAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYER 180 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 180 (551)
++++.+.++...+.. +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555666666554432 34666777777777777887 778777776643 3466788888888888888888888888
Q ss_pred hhhCCcccCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------CCHHH
Q 048830 181 MRFEDVGLDGFTLVCLLSSCAHV---------GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKC--------GNLDS 243 (551)
Q Consensus 181 m~~~~~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--------g~~~~ 243 (551)
..+. .|+...+..+..++... |++++|...++++++.. +.+...+..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 8765 46667777788888888 88888888888888865 33577888888888888 88999
Q ss_pred HHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 244 AFCVFSRMRK------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 244 A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
|.+.|++..+ .+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999888753 367788889999999999999999999988753 234466778888888899999999888777
Q ss_pred HH
Q 048830 318 VS 319 (551)
Q Consensus 318 ~~ 319 (551)
..
T Consensus 319 ~~ 320 (474)
T 4abn_A 319 KP 320 (474)
T ss_dssp CH
T ss_pred cC
Confidence 43
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-10 Score=104.11 Aligned_cols=205 Identities=12% Similarity=0.005 Sum_probs=158.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIV 264 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 264 (551)
.|...+......+...|++++|...++.+++...+++...+..+..+|...|++++|.+.|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999987546777777799999999999999999998753 35678888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-H-------hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---ccchhhh
Q 048830 265 GYGVHGRGDEAISFFKQMLMAGFHPD-S-------ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG---IKHYGCL 333 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 333 (551)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999885 343 3 3577777888889999999999998864 4564 5677778
Q ss_pred hHHHhhcCCH--HHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 334 VDLYGRAGKL--EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 334 i~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
..+|...|+. ++|..+... +...+..+. ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASS----NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTT----CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccC----CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766654 333222211 444444333 344567899999999999999999888877766543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-08 Score=107.81 Aligned_cols=371 Identities=8% Similarity=-0.020 Sum_probs=253.7
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC---hHHHHHHHHHHHHhC-CCCChh
Q 048830 50 NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA---LNKCQELHGFVIRSG-YERCVV 125 (551)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~ 125 (551)
+.|..+|..++..+.+.+.++.+..+|+++...-+ .....|..-+..-.+.++ ++.+..+|+..+... .+|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 35889999999999999999999999999998754 455667777777778888 999999999998763 137888
Q ss_pred HHHHHHHHHHhCCCH--------HHHHHHhccCC------CC-ChhHHHHHHHHHH---------hcCChHHHHHHHHHh
Q 048830 126 VSTNLMRGYAANGVI--------EAARSVFDNMP------ER-DLVSWNSIISCYT---------QASFHLEALKLYERM 181 (551)
Q Consensus 126 ~~~~li~~y~~~g~~--------~~A~~~~~~m~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m 181 (551)
.|..-+....+.++. +...++|+... ++ +...|...+.... ..++.+.+..+|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888877766555543 33446776522 22 3467888776543 234577889999998
Q ss_pred hhCCcccCHHHHH---HHHHHHH----------hcCChHHHHHHHHHHHHh--CCC---------------C--c-----
Q 048830 182 RFEDVGLDGFTLV---CLLSSCA----------HVGALNMGIFLHRIACEM--GFV---------------E--S----- 224 (551)
Q Consensus 182 ~~~~~~p~~~t~~---~ll~~~~----------~~~~~~~a~~~~~~~~~~--g~~---------------~--~----- 224 (551)
+......-..+|. ....... ....++.|...+..+.+. ++. | +
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 8532211122332 2221110 011233344444443321 211 1 0
Q ss_pred -hhHHHHHHHHHHhcC-------CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHh
Q 048830 225 -VYVGNALVDMYAKCG-------NLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAI-SFFKQMLMAGFHPDSI 292 (551)
Q Consensus 225 -~~~~~~li~~y~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~ 292 (551)
...|...++.--..+ ..+.+..+|++... .+...|-..+.-+...|+.++|. .+|++.... ++.+..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 134555555433322 12334566776653 46778888888888999999997 999999874 344455
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcC--------CCCC------------ccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYN--------LKPG------------IKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.+...+...-..|+++.|..+|+.+++... -.|+ ..+|...++...+.|.++.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566777778889999999999999986310 0132 34688888888899999999999998
Q ss_pred cCCC----CHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 353 SSPS----DPVLWRTLLGSCKI-HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 353 ~~~~----~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
++.. ...+|...+..-.. .++.+.|..+|+.+++..|.++..+...+......|+.+.|+.+|++......
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 6543 34444433333333 35699999999999999999999888999999999999999999999876544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-09 Score=103.90 Aligned_cols=259 Identities=10% Similarity=-0.107 Sum_probs=154.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCC----hhHHHH
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTF----TFTFTLKACERVKALNKCQELHGFVIRSGY-ERC----VVVSTN 129 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~ 129 (551)
....+...|++++|...+++....... .+.. ++..+...+...|++++|...+.+..+... ..+ ..++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344566788888888888887765432 2222 345555667778888888888887765321 111 123456
Q ss_pred HHHHHHhCCCHHHHHHHhccCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCc----ccCHHHHH
Q 048830 130 LMRGYAANGVIEAARSVFDNMPE-------R----DLVSWNSIISCYTQASFHLEALKLYERMRFEDV----GLDGFTLV 194 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~t~~ 194 (551)
+...|...|++++|...+++... + ...++..+...+...|++++|...+++...... .....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66777788888888777765432 1 123455667777778888888888777654221 11234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHHhcCCCC-------HhHHHH
Q 048830 195 CLLSSCAHVGALNMGIFLHRIACEMGFVESV-YVGN-----ALVDMYAKCGNLDSAFCVFSRMRKRD-------VLSWNS 261 (551)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~ 261 (551)
.+...+...|++++|...++........++. ..+. ..+..+...|++++|...+++...++ ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6667777778888888877777654211111 1111 23344667788888888877766432 123455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMA----GFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666677777777777777766542 111122 134444455556666666666665554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.6e-11 Score=107.02 Aligned_cols=186 Identities=13% Similarity=0.018 Sum_probs=118.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHH
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLL 298 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 298 (551)
++..+..+...|.+.|++++|.+.|++..+ ++...|..+..++...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 456666777777777777777777776542 55666666777777777777777777777764 343 35666677
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-Cc-------cchhhhhHHHhhcCCHHHHHHHHhhcCCCC-----HHHHHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKP-GI-------KHYGCLVDLYGRAGKLEKALEVINTSSPSD-----PVLWRTLL 365 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ll 365 (551)
..+...|++++|...+++..+. .| +. ..|..+...+...|++++|.+.|++++..+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7777777777777777777653 23 22 346666666677777777777777655552 23445555
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..+.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 55533 33444555666655554444332 234445569999999988763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=122.76 Aligned_cols=160 Identities=15% Similarity=0.177 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCG 300 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 300 (551)
...++.|..+|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|+..|++..+. .|+ ...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 55667777777777777777777776542 35667777777777777777777777777764 343 4667777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 376 (551)
+...|++++|.+.|++.++ +.| +...|..+..+|.+.|++++|++.|++++.. +...|..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 7777888888877777764 345 4667777777888888888888877775543 77788888888888888888
Q ss_pred HHHHHHHHHhhcC
Q 048830 377 GEIAMKNLVQLEA 389 (551)
Q Consensus 377 a~~~~~~~~~~~p 389 (551)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 8888888877644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-09 Score=100.17 Aligned_cols=157 Identities=9% Similarity=-0.099 Sum_probs=82.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhhC----CcccC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC---C--chhHHHHH
Q 048830 162 ISCYTQASFHLEALKLYERMRFE----DVGLD-GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV---E--SVYVGNAL 231 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~--~~~~~~~l 231 (551)
...|...|++++|+..|.+..+. |-.++ ..+|..+..+|...|++++|...++..++.... + ...+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555666666666666655432 21111 345556666666666666666666655542100 0 02345555
Q ss_pred HHHHHhc-CCHHHHHHHHHhcCC--C---C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh------hHH
Q 048830 232 VDMYAKC-GNLDSAFCVFSRMRK--R---D----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI------TFL 295 (551)
Q Consensus 232 i~~y~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~ 295 (551)
..+|... |++++|...|++..+ | + ..+|+.+...|...|++++|+..|++..+........ .+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 6666664 666666666655432 0 1 2345555566666666666666666665532211111 344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhH
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
.+..++...|++++|...|++..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555666666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-09 Score=103.72 Aligned_cols=211 Identities=10% Similarity=-0.056 Sum_probs=151.2
Q ss_pred ChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhcCCHHHH
Q 048830 170 FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM----GFVES-VYVGNALVDMYAKCGNLDSA 244 (551)
Q Consensus 170 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~y~~~g~~~~A 244 (551)
++++|...|.+. ...+...|++++|...+....+. |..++ ..+++.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888887766 34577889999999999888764 32222 56888999999999999999
Q ss_pred HHHHHhcCC-----CC----HhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHhccCCHHH
Q 048830 245 FCVFSRMRK-----RD----VLSWNSMIVGYGVH-GRGDEAISFFKQMLMAGFH-PD----SITFLGLLCGCSHQGLVEE 309 (551)
Q Consensus 245 ~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~ 309 (551)
...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 998887653 12 35788888889986 9999999999988763110 01 3467788888999999999
Q ss_pred HHHHHHHhHHhcCCCCCcc-----chhhhhHHHhhcCCHHHHHHHHhhcCCCCH--------HHHHHHHHHHH--hcCcH
Q 048830 310 GVEYFHMMVSRYNLKPGIK-----HYGCLVDLYGRAGKLEKALEVINTSSPSDP--------VLWRTLLGSCK--IHRNV 374 (551)
Q Consensus 310 a~~~~~~~~~~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~ll~~~~--~~g~~ 374 (551)
|...|++..+...-.+... .|..+..++...|++++|...|++++..++ ..+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998876421111211 456677788889999999999988666421 13444555554 45678
Q ss_pred HHHHHHHHHHHhhcCCCcchH
Q 048830 375 EIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~~~~ 395 (551)
++|...|+++.+++|.....+
T Consensus 257 ~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHhccCCccHHHHHHHH
Confidence 888888888777777654333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=7.9e-11 Score=110.85 Aligned_cols=153 Identities=15% Similarity=0.078 Sum_probs=90.3
Q ss_pred hcCChHHHHHHHHHhhh-------CCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh------CCCC-chhHHHHHH
Q 048830 167 QASFHLEALKLYERMRF-------EDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM------GFVE-SVYVGNALV 232 (551)
Q Consensus 167 ~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li 232 (551)
..|++++|+.+|++..+ ...+....++..+...+...|++++|...+..+++. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666655443 121223446666777777777777777777776654 2122 245666677
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HhhH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRK-------R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA------GFHPD-SITF 294 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~ 294 (551)
.+|...|++++|.+.|++..+ + ...+|..+...|...|++++|+..|+++... +-.|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777777777777777665532 1 2345566666666667777777666666553 11222 2455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
..+...+...|++++|..+++++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-09 Score=98.53 Aligned_cols=150 Identities=17% Similarity=0.075 Sum_probs=109.5
Q ss_pred HhCCCHHHHHHHhccCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhC------Cccc-CHHHHHHH
Q 048830 135 AANGVIEAARSVFDNMPE-------R----DLVSWNSIISCYTQASFHLEALKLYERMRFE------DVGL-DGFTLVCL 196 (551)
Q Consensus 135 ~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~l 196 (551)
...|++++|+..|++..+ + ...+|..+...|...|++++|+..|.+..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666554432 2 2456888888889999999999999887653 2222 34577788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CHhH
Q 048830 197 LSSCAHVGALNMGIFLHRIACEM------GF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRKR-----------DVLS 258 (551)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~ 258 (551)
...+...|++++|...+..+.+. .. +....++..+...|...|++++|.+.|++..+. ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999999988888765 11 233667788888899999999998888876421 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
+..+...|...|++++|...|++...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888899999999999888775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-09 Score=98.44 Aligned_cols=205 Identities=10% Similarity=-0.038 Sum_probs=147.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HhhH
Q 048830 223 ESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-D---VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPD-SITF 294 (551)
Q Consensus 223 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 294 (551)
.+...+-.+...+.+.|++++|...|+++.+ | + ..++..+..+|...|++++|+..|++...... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456677778888899999999999998864 3 3 56788888889999999999999999888531 122 3456
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHH
Q 048830 295 LGLLCGCSH--------QGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLL 365 (551)
Q Consensus 295 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 365 (551)
..+..++.. .|++++|...|+++.+. .|+ ......+... ...... ....+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~-------~~~~~~-------~~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKI-------RELRAK-------LARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHH-------HHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHH-------HHHHHH-------HHHHHHHHH
Confidence 667777777 88999999999988765 243 2222221111 111111 122356778
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHhhhc----------CChhHHHHHHHHHHhCCCccCCceeEE
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYACT----------KDEEGVARTRKLIKSNGIKTTPGWSWI 432 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~ 432 (551)
..+...|++++|...++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 88999999999999999999999985 45888999999877 899999999998876321
Q ss_pred EECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHh
Q 048830 433 EIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKF 467 (551)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 467 (551)
.++...+....+.++...+..
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666777777666654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-10 Score=98.85 Aligned_cols=137 Identities=13% Similarity=0.027 Sum_probs=89.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKL 343 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 343 (551)
+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|...|++.++ +.| +...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 34445555666555554432 222 23444555666666666666666666653 234 455666666666666777
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHH-HHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEI-AMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
++|...|++++.. ++.+|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7776666654432 77788888888888888766554 4588889999999888888888887775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-08 Score=92.89 Aligned_cols=182 Identities=9% Similarity=-0.033 Sum_probs=126.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh----h
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI----T 293 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 293 (551)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 344566677788889999999999998763 32 2467778889999999999999999988753 3322 3
Q ss_pred HHHHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCCc-cchhhhhHHHhhcCCHHHHHHHHhhcC
Q 048830 294 FLGLLCGCSH------------------QGLVEEGVEYFHMMVSRYNLKPGI-KHYGCLVDLYGRAGKLEKALEVINTSS 354 (551)
Q Consensus 294 ~~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 354 (551)
+..+..++.. .|+.++|...|+.+++. .|+. ..+.++.. .+.+.. .
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~------~-- 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKD------R-- 145 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHH------H--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHH------H--
Confidence 4444444443 45677777777777643 3432 22211111 000000 0
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc---chHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 355 PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA---GDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 355 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
.......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 011223456778899999999999999999999976 57899999999999999999999998876543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-09 Score=98.00 Aligned_cols=201 Identities=11% Similarity=-0.029 Sum_probs=141.0
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----CHhHH
Q 048830 188 LDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R----DVLSW 259 (551)
Q Consensus 188 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~ 259 (551)
.+...+-.....+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++..+ | ...++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345667777888899999999999999999864221 156788899999999999999999998863 2 24567
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccch
Q 048830 260 NSMIVGYGV--------HGRGDEAISFFKQMLMAGFHPDSI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHY 330 (551)
Q Consensus 260 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 330 (551)
..+..++.. .|++++|+..|++.... .|+.. ....+ ..+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999985 34432 22111 111111000 01124
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCC---C---CHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhhcCCCcc-
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSP---S---DPVLWRTLLGSCKIH----------RNVEIGEIAMKNLVQLEAASAG- 393 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~---~---~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 393 (551)
..+...|.+.|++++|...|++++. . ....+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 4567777888888888888776432 2 344666777777655 8999999999999999999864
Q ss_pred --hHHHHHHHhhhcCChh
Q 048830 394 --DYVLLATIYACTKDEE 409 (551)
Q Consensus 394 --~~~~l~~~~~~~g~~~ 409 (551)
+...+..++...|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3444555554444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-09 Score=86.50 Aligned_cols=129 Identities=18% Similarity=0.257 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
+|..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|..+++++.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C-------------
Confidence 45555666666666666666666665542 223444555555555555555555555555432 1
Q ss_pred hhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHH
Q 048830 338 GRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKL 417 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (551)
|.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...+++
T Consensus 66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 114455666666667777777777777777777777777777777777777777777777777
Q ss_pred HHh
Q 048830 418 IKS 420 (551)
Q Consensus 418 m~~ 420 (551)
+.+
T Consensus 129 ~~~ 131 (136)
T 2fo7_A 129 ALE 131 (136)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=9e-09 Score=109.89 Aligned_cols=167 Identities=8% Similarity=-0.114 Sum_probs=139.9
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 236 AKCGNLDSAFCVFSRMR-----------KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 236 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
...|++++|.+.|++.. ..+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998876 2456788888899999999999999999998853 33557788888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHH
Q 048830 305 GLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIA 380 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~ 380 (551)
|++++|...|+++.+ +.| +...+..+..+|.+.|++++ .+.|++++.. +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999875 345 57788889999999999999 8888876543 888999999999999999999999
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 381 MKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
++++++++|+++.++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999988766
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=5.1e-08 Score=91.36 Aligned_cols=107 Identities=15% Similarity=0.006 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-----RDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
+...++..++.+ .++......+..+|...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444433332 22333334455555555555555555555422 133444445555555555555555555555
Q ss_pred HcCCCC-----CHhhHHHHHHHHh--c--cCCHHHHHHHHHHhH
Q 048830 284 MAGFHP-----DSITFLGLLCGCS--H--QGLVEEGVEYFHMMV 318 (551)
Q Consensus 284 ~~g~~p-----~~~t~~~ll~~~~--~--~g~~~~a~~~~~~~~ 318 (551)
+. .| +..+...|..++. . .++..+|..+|+++.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~ 205 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS 205 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 43 33 2333344443321 1 124555555555553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-08 Score=89.95 Aligned_cols=171 Identities=9% Similarity=-0.047 Sum_probs=127.4
Q ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC----CHHHHHHHHHHhH
Q 048830 244 AFCVFSRMR-KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG----LVEEGVEYFHMMV 318 (551)
Q Consensus 244 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~ 318 (551)
|.+.|++.. ..++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444332 2456666667777777777777777777777655 45556666666666 5 7888888888775
Q ss_pred HhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-C----HHHHHHHHHHHHh----cCcHHHHHHHHHHHH
Q 048830 319 SRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-D----PVLWRTLLGSCKI----HRNVEIGEIAMKNLV 385 (551)
Q Consensus 319 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~----~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 385 (551)
+. -+...+..|..+|.. .+++++|.++|+++... + +..+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 43 245566677777766 78889999999887777 5 7888888888888 789999999999999
Q ss_pred hhcCCCcchHHHHHHHhhhc-C-----ChhHHHHHHHHHHhCCC
Q 048830 386 QLEAASAGDYVLLATIYACT-K-----DEEGVARTRKLIKSNGI 423 (551)
Q Consensus 386 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 423 (551)
++ |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778899999999765 3 89999999998887664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=9.4e-09 Score=84.28 Aligned_cols=124 Identities=21% Similarity=0.309 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
..+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++...+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3577889999999999999999998753 467889999999999999999999999998864 345667778888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
..|++++|..+++.+.+. .+.+...+..++..|.+.|++++|.+.+++
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999998888653 112333444444444444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8e-09 Score=97.86 Aligned_cols=174 Identities=8% Similarity=-0.033 Sum_probs=130.4
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048830 242 DSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRY 321 (551)
Q Consensus 242 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 321 (551)
+...+.+......+...+..+...+.+.|++++|+..|++..... +-+...+..+...+...|++++|...++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 344444555444455666677777888888888888888887752 22446677778888888888888888887753
Q ss_pred CCCCCccchhh-hhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC--cchH
Q 048830 322 NLKPGIKHYGC-LVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS--AGDY 395 (551)
Q Consensus 322 ~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~ 395 (551)
..|+...... ....+...++.++|.+.+++++ |.+...+..+...+...|++++|...++++++.+|++ +..+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3454332222 2223556677777777776644 3388999999999999999999999999999999988 8899
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHH
Q 048830 396 VLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
..|+.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=88.45 Aligned_cols=255 Identities=12% Similarity=0.070 Sum_probs=151.9
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 100 ERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYE 179 (551)
Q Consensus 100 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 179 (551)
--.|++..+..- ..+...........-+.++|...|+++.. .-..|.......+.. |...+ |+..|+
T Consensus 24 fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-----~~~~~~~~a~~~la~-~~~~~----a~~~l~ 90 (310)
T 3mv2_B 24 YYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ-----DPTSKLGKVLDLYVQ-FLDTK----NIEELE 90 (310)
T ss_dssp HTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC-----CSSSTTHHHHHHHHH-HHTTT----CCHHHH
T ss_pred HHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHHH-Hhccc----HHHHHH
Confidence 346788777662 22211111222333345777777776642 112233333333333 33322 778888
Q ss_pred HhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C--
Q 048830 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-VESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-- 254 (551)
Q Consensus 180 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-- 254 (551)
+....+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..|.+.|+.+.|.+.+++|.+ |
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 777655 55666666778888888999999988888766553 23567777888889999999999999988864 3
Q ss_pred ---CHhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc
Q 048830 255 ---DVLSWNSMIVG--YGVHG--RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI 327 (551)
Q Consensus 255 ---~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 327 (551)
+..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.+ |+.
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~---p~~ 244 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY---YSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH---HHT
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc---ccc
Confidence 13445555555 33334 888999999998654 4553444455557788888888888887664321 100
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
++-+-+ -|.|+.+...++......|+ +|.++++++.+..|++|...
T Consensus 245 -------------~~k~~~-------~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 245 -------------EQKENA-------VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp -------------TTCHHH-------HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred -------------cccccC-------CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 000000 01134444344444444454 66777777778888776443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=91.47 Aligned_cols=121 Identities=16% Similarity=0.038 Sum_probs=102.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHR 372 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g 372 (551)
|...+...|++++|+..++... ...| +...+..+..+|.+.|++++|++.|++++.. ++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455667889999999998875 4455 4566778999999999999999999986544 8999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHH-HHHHHh
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART-RKLIKS 420 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 420 (551)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887775 476655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9.7e-09 Score=107.50 Aligned_cols=158 Identities=12% Similarity=0.047 Sum_probs=125.7
Q ss_pred cCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 048830 238 CGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 238 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998874 357889999999999999999999999999853 334678888999999999999999999
Q ss_pred HHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhh
Q 048830 315 HMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH---RNVEIGEIAMKNLVQL 387 (551)
Q Consensus 315 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 387 (551)
++..+. .| +...+..+..+|.+.|++++|.+.+++++.. +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999864 45 5778899999999999999999999985543 888999999999999 9999999999999999
Q ss_pred cCCCcchHHHHH
Q 048830 388 EAASAGDYVLLA 399 (551)
Q Consensus 388 ~p~~~~~~~~l~ 399 (551)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999998888776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-08 Score=106.09 Aligned_cols=188 Identities=15% Similarity=0.010 Sum_probs=146.6
Q ss_pred HhcCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhc
Q 048830 201 AHVGALNMGIFLHRIAC--------EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVH 269 (551)
Q Consensus 201 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 269 (551)
...|++++|.+.++.+. +.. +.+...+..+..+|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67889999999999887 432 34567888899999999999999999998764 4778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHH
Q 048830 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALE 348 (551)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 348 (551)
|++++|+..|++..+.. +-+...+..+..++.+.|++++ ...|+++.+. .| +...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999863 2245778889999999999999 9999998753 45 56788999999999999999999
Q ss_pred HHhhcCCC---CHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhhcCCCcch
Q 048830 349 VINTSSPS---DPVLWRTLLGSCKIHRN-----VEIGEIAMKNLVQLEAASAGD 394 (551)
Q Consensus 349 ~~~~~~~~---~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 394 (551)
.|++++.. +...|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99997765 56778888888766665 344444444444454554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-07 Score=88.56 Aligned_cols=159 Identities=9% Similarity=0.029 Sum_probs=116.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHh----hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhh
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAG-FHPDSI----TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGC 332 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 332 (551)
.+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...|+.+.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 223321 2334666667777888888888888763222222 225778
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCC-------C---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSP-------S---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYV 396 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~-------~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 396 (551)
+...|...|++++|.+.|++++. . ...++..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888877552 2 44578889999999999999999999999875432 56899
Q ss_pred HHHHHhhhcCC-hhHHHHHHHHHHh
Q 048830 397 LLATIYACTKD-EEGVARTRKLIKS 420 (551)
Q Consensus 397 ~l~~~~~~~g~-~~~a~~~~~~m~~ 420 (551)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999887753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-08 Score=96.53 Aligned_cols=178 Identities=12% Similarity=0.064 Sum_probs=114.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HhhHHHHH
Q 048830 233 DMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAG---FHPD--SITFLGLL 298 (551)
Q Consensus 233 ~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll 298 (551)
..|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666665554432 11 2356666777777777777777777665421 0121 24566777
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC----CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----C----HHHHHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKP----GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----D----PVLWRTLL 365 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~ll 365 (551)
..|.. |++++|...|++..+.+.-.. ...++..+..+|.+.|++++|++.|++++.. + ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77777 888888888887765321111 1456777888888888888888888875543 1 23566666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCCcch-----HHHHHHHhhhcCChhHHHH
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGD-----YVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 413 (551)
..+...|++++|...+++.+ +.|..... ...++.++ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 77777899999999999999 88865432 33455555 4667665555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=96.24 Aligned_cols=195 Identities=11% Similarity=-0.012 Sum_probs=150.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
.|++++|.+++++..+.... . .+...+++++|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56777888888877764211 1 01115889999888776 356788999999999999988
Q ss_pred HHcCC---CC-C-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CC--CccchhhhhHHHhhcCCHHHHHHHHhhc
Q 048830 283 LMAGF---HP-D-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL--KP--GIKHYGCLVDLYGRAGKLEKALEVINTS 353 (551)
Q Consensus 283 ~~~g~---~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 353 (551)
.+... .+ . ..+|..+...|...|++++|...|++..+.+.- .| ...++..+..+|.. |++++|++.|+++
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76311 11 1 357888889999999999999999988754211 11 24677888999988 9999999999986
Q ss_pred CCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc------chHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 354 SPS---------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA------GDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 354 ~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
+.. ...++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654 156788899999999999999999999999876543 36777888899999999999999988
Q ss_pred H
Q 048830 419 K 419 (551)
Q Consensus 419 ~ 419 (551)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 6
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-09 Score=88.18 Aligned_cols=101 Identities=8% Similarity=-0.059 Sum_probs=89.2
Q ss_pred CCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 322 NLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 322 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
.+.| +...+..+...+.+.|++++|.+.|++++.. ++..|..+..++...|++++|...|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4556 4567778888888999999999998875533 89999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 398 LATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
++.+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-06 Score=85.43 Aligned_cols=351 Identities=7% Similarity=-0.049 Sum_probs=172.6
Q ss_pred ccHHHHHHHHHHcCCCCChHHHHHHHhcCC--CCChhhHHHHHHHHHcCCC-hhHHHHHHHHHHHc-CCCCCChhhHHHH
Q 048830 20 EIHGEWLLNSYAISVSSSLSYAQLLFNQIQ--NPQTQAWNSLIRAFAQSLS-PLQAIFYYNHMLMA-SLSRPDTFTFTFT 95 (551)
Q Consensus 20 ~~~~~~li~~~~~~~~g~~~~A~~lf~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-~~~~pd~~~~~~l 95 (551)
-.+|...+..+-. |+.+.|..+|++.. .|++..|...+....+.+. .+....+|+..+.. |...++...|...
T Consensus 15 R~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 4466777777754 78999999998654 4788899888887766653 45667788877654 4321345566666
Q ss_pred HHHHh----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------CCCHHHHHHHhccCCC----CC
Q 048830 96 LKACE----RVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAA-------------NGVIEAARSVFDNMPE----RD 154 (551)
Q Consensus 96 l~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~m~~----~~ 154 (551)
+..+. ..++.+.+..+|+.++......-...|......-.. .+.+..|..+++.+.. .+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 65543 235678888999988873211111222222111100 0112223333322211 13
Q ss_pred hhHHHHHHHHHHhcC--C-----hHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 048830 155 LVSWNSIISCYTQAS--F-----HLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYV 227 (551)
Q Consensus 155 ~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 227 (551)
...|...+.--...+ - .+.+..+|+++.... +.+...|...+.-+...|+++.|..+++..++. +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 335554444322211 0 234556676666532 333455555555666677777777777777776 333333
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHhcC------------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 048830 228 GNALVDMYAKCGNLDSA-FCVFSRMR------------KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITF 294 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 294 (551)
+.. |+...+.++. ..+.+... ......|...+....+.++.+.|..+|++. .. ..++...|
T Consensus 249 ~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 249 SLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp HHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred HHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 222 2221111111 11111110 001133555555555555666666666666 21 11122222
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCc
Q 048830 295 LGLLCGCS-HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 295 ~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 373 (551)
......-. ..++.+.|..+|+...+.++-. +..+...++...+.|+.+.|..+|++ .......|...+..-..+|+
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er-~~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEENARALFKR-LEKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHH-SCCBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC
Confidence 21111111 1224666666666665543221 22344455555556666666666666 33345555555555555555
Q ss_pred HHHHHHHHHHHH
Q 048830 374 VEIGEIAMKNLV 385 (551)
Q Consensus 374 ~~~a~~~~~~~~ 385 (551)
.+.+..++++..
T Consensus 400 ~~~~r~v~~~~~ 411 (493)
T 2uy1_A 400 MELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-08 Score=104.41 Aligned_cols=148 Identities=13% Similarity=-0.024 Sum_probs=104.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFF 279 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (551)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888888888887754 23467888888899999999999999988754 35678888888999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhc---CCHHHHHHHHhhcCC
Q 048830 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRA---GKLEKALEVINTSSP 355 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 355 (551)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .| +...+..+..++... |++++|.+.+++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9888763 334577888888899999999999999988754 34 467788888888888 999999988887443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=81.30 Aligned_cols=106 Identities=10% Similarity=0.006 Sum_probs=67.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSC 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 368 (551)
.+......+.+.|++++|...|++.++. .| +...|..+..+|.+.|++++|++.|++++.. +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4445555666666666666666665532 23 4555566666666666666666666654432 666777777777
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 401 (551)
...|++++|...|+++++++|+++.++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777777766666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.6e-08 Score=83.71 Aligned_cols=155 Identities=10% Similarity=-0.026 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQ 304 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 304 (551)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.... .+...+.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~~-- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKLE-- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHHH--
Confidence 44555666777777777777777664 35566667777777777777777777666543 2322211 1111000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 305 GLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTS---SPSDPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 305 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
+...+...+|...++++ -|.+...+..+...+...|++++|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00001111233333332 3447888888999999999999999999
Q ss_pred HHHHhhcCCC--cchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 382 KNLVQLEAAS--AGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 382 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
+++++.+|+. +..+..++.++...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 9999999875 5589999999999999999999887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=86.14 Aligned_cols=100 Identities=9% Similarity=-0.046 Sum_probs=86.0
Q ss_pred CCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 322 NLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 322 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
.+.| +...+..+...+.+.|++++|...|++++. .+...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3445 456677778888889999999988887443 388899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHhC
Q 048830 398 LATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++.+|...|++++|...+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=82.58 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=90.2
Q ss_pred CCCC-ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 323 LKPG-IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 323 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
+.|+ ...+......|.+.|++++|++.|++++.. +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4553 466778899999999999999999986644 899999999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.3e-08 Score=86.46 Aligned_cols=119 Identities=10% Similarity=-0.018 Sum_probs=69.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcH
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNV 374 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~ 374 (551)
...+...|++++|...|++. +.|+...+..+...|.+.|++++|.+.|++++. .+...|..+..++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 33444445555555544433 123444455555555555555555555544332 2555666666666666666
Q ss_pred HHHHHHHHHHHhhcCCCc----------------chHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 375 EIGEIAMKNLVQLEAASA----------------GDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 375 ~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++|...++++++..|.++ ..+..++.+|...|++++|...+++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666666555 66677777777777777777777766553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=93.47 Aligned_cols=189 Identities=10% Similarity=-0.075 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
..+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555555666666555555431 245555666666666666666666666655531 223345556666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAM 381 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 381 (551)
..|++++|...|+...+. .| +...+...+....+..+.......-....+.+..+...+.... .|+.++|...+
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 666666666666665532 22 1222223333322222222222222221333555544443322 58888999999
Q ss_pred HHHHhhcCCCcchHHHHHHHhhhc-CChhHHHHHHHHHHh
Q 048830 382 KNLVQLEAASAGDYVLLATIYACT-KDEEGVARTRKLIKS 420 (551)
Q Consensus 382 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 420 (551)
+++++++|++......+...+.+. +++++|.++|..+.+
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998877777777777777 778999999987765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-07 Score=83.59 Aligned_cols=171 Identities=12% Similarity=-0.093 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 048830 209 GIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK-RDVLSWNSMIVGYGVHG----RGDEAISFFKQML 283 (551)
Q Consensus 209 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 283 (551)
|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+ .++.++..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455555543 455666666666666777777777766543 355666666666665 5 6777777777776
Q ss_pred HcCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCC---ccchhhhhHHHhh----cCCHHHHHHHHhh
Q 048830 284 MAGFHPDSITFLGLLCGCSH----QGLVEEGVEYFHMMVSRYNLKPG---IKHYGCLVDLYGR----AGKLEKALEVINT 352 (551)
Q Consensus 284 ~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 352 (551)
+.| +...+..|...|.. .+++++|..+|++..+ ..|+ +..+..|..+|.. .+++++|..+|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 654 45556666666665 6677777777777753 2332 5666677777776 6778888888777
Q ss_pred cCCC--CHHHHHHHHHHHHhc-C-----cHHHHHHHHHHHHhhcC
Q 048830 353 SSPS--DPVLWRTLLGSCKIH-R-----NVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 353 ~~~~--~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 389 (551)
+... +...+..|...|... | +.++|...++++.+.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5543 566677777766543 2 78888888888877753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=84.06 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=10.2
Q ss_pred HHHcCCChhHHHHHHHHHHHc
Q 048830 62 AFAQSLSPLQAIFYYNHMLMA 82 (551)
Q Consensus 62 ~~~~~g~~~~A~~l~~~m~~~ 82 (551)
.+...|++++|+..|++....
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~ 33 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL 33 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 344445555555555554443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-07 Score=83.45 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=11.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhh
Q 048830 162 ISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~ 183 (551)
...+...|++++|+..|++..+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455555555555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-07 Score=87.73 Aligned_cols=162 Identities=9% Similarity=-0.017 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----cc
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-S----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IK 328 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 328 (551)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888888777766422111 1 12334555667778888888888877643111111 34
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCC------C----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC------Cc
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSP------S----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA------SA 392 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 392 (551)
+|+.+...|...|++++|.+.|++++. . ...++..+...|...|++++|...+++++++.+. -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677788888888888888888877552 1 2257888889999999999999999999886532 15
Q ss_pred chHHHHHHHhhhcCChhHH-HHHHHHHH
Q 048830 393 GDYVLLATIYACTKDEEGV-ARTRKLIK 419 (551)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 419 (551)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77777664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-07 Score=80.48 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHH-HHh
Q 048830 127 STNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSS-CAH 202 (551)
Q Consensus 127 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~ 202 (551)
+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34455667777777777777777664 34566777777777777777777777766543 2333222111111 111
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---HhHHHHHHHHHHhcCChHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD---VLSWNSMIVGYGVHGRGDEAIS 277 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~ 277 (551)
.+....+...++.+++.. +.+...+..+..+|...|++++|...|+++.+ |+ ...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122223556666666543 22456666667777777777777777766543 21 3366666666777777777766
Q ss_pred HHHHHH
Q 048830 278 FFKQML 283 (551)
Q Consensus 278 ~~~~m~ 283 (551)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.2e-07 Score=83.89 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHH-H
Q 048830 121 ERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVC-L 196 (551)
Q Consensus 121 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l 196 (551)
+.+...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...|++.... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 33444455555556666666666666655432 23445555666666666666666666555432 233322211 1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---HhHHHHHHHHHHhcCC
Q 048830 197 LSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD---VLSWNSMIVGYGVHGR 271 (551)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~ 271 (551)
...+...+..+.|...++...+.. +.+...+..+...|...|++++|.+.|.++.+ |+ ...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 222444555555666666665553 23455666666666666777777666666543 21 4566667777777777
Q ss_pred hHHHHHHHHHHH
Q 048830 272 GDEAISFFKQML 283 (551)
Q Consensus 272 ~~~A~~~~~~m~ 283 (551)
.++|...|++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777776666544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-06 Score=83.03 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCC----
Q 048830 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVE--EGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGK---- 342 (551)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~---- 342 (551)
+++++++.+++++.+.. +-+...++.-...+.+.|.++ ++.++++.+++. .| |-..|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 34444445444444432 123333333333333444444 444554444432 12 33333333333333333
Q ss_pred --HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhhc---CCCcchHHHHHHHhhhcCChhHHHH
Q 048830 343 --LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNV-EIGEIAMKNLVQLE---AASAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 343 --~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
++++++.+++++.. |...|+.+...+...|+. +....+.+++++++ |.++.++..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 55566555543322 677777766666666553 33445566655554 6666777777777777777777777
Q ss_pred HHHHHHh
Q 048830 414 TRKLIKS 420 (551)
Q Consensus 414 ~~~~m~~ 420 (551)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=84.58 Aligned_cols=183 Identities=11% Similarity=-0.026 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---hHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--RD-V---LSWNS 261 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 261 (551)
...+..+...+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566778889999999999999999864322 135788889999999999999999999763 32 2 24555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 048830 262 MIVGYGV------------------HGRGDEAISFFKQMLMAGFHPDSIT-FLGLLCGCSHQGLVEEGVEYFHMMVSRYN 322 (551)
Q Consensus 262 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 322 (551)
+..++.. .|+.++|+..|+++.+. .|+... ..... .. ..+...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l------~~~~~~~~~--- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RL------VFLKDRLAK--- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HH------HHHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HH------HHHHHHHHH---
Confidence 5555554 57899999999999975 455432 21111 00 011111110
Q ss_pred CCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---C---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 323 LKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---D---PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 323 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
....+...|.+.|++++|...|++++.. + ...+..+..++...|+.++|...++.+....|++..
T Consensus 149 ------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 ------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1234677888999999999998875433 3 356888889999999999999999999988887643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-06 Score=81.78 Aligned_cols=158 Identities=12% Similarity=-0.006 Sum_probs=120.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-----C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HhhHH
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRKR-----D----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PD----SITFL 295 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 295 (551)
..+..+...|++++|.+.+++..+. + ...+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788889999999999886541 1 113334666777788999999999999874322 22 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcC----CCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHHHH
Q 048830 296 GLLCGCSHQGLVEEGVEYFHMMVSRYN----LKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DPVLW 361 (551)
Q Consensus 296 ~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 361 (551)
.+...|...|++++|..+|+++.+... ..+ ...++..+...|.+.|++++|.+.+++++.. -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888999999999999999999875321 122 2357888999999999999999999876643 26788
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHhh
Q 048830 362 RTLLGSCKIHRN-VEIGEIAMKNLVQL 387 (551)
Q Consensus 362 ~~ll~~~~~~g~-~~~a~~~~~~~~~~ 387 (551)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999994 69999999998875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=80.35 Aligned_cols=124 Identities=9% Similarity=-0.040 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHh
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKI 370 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 370 (551)
+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+++++. .+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444445555556666666666555432 112345555666666666666666666655332 267788888888999
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcchHHHHHHH--hhhcCChhHHHHHHHHHH
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATI--YACTKDEEGVARTRKLIK 419 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 419 (551)
.|++++|...++++++..|.++..+..+..+ +...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999988887554444 888899999999987664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-06 Score=76.50 Aligned_cols=146 Identities=8% Similarity=-0.044 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCC
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL 306 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 306 (551)
.+..+...|...|++++|.+.|++...++..+|..+...|...|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345667788899999999999999988888899999999999999999999999988863 3456778888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 048830 307 VEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLV 385 (551)
Q Consensus 307 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 385 (551)
+++|...|+...+. .|+..... +...|. . ... ....|..+..++...|++++|...+++++
T Consensus 87 ~~~A~~~~~~al~~---~~~~~~~~-----~~~~~~---------~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ---LRGNQLID-----YKILGL---------Q-FKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHT---TTTCSEEE-----CGGGTB---------C-CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccHHH-----HHHhcc---------c-cCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999988764 23211000 001110 1 111 56788889999999999999999999999
Q ss_pred hhcCCC
Q 048830 386 QLEAAS 391 (551)
Q Consensus 386 ~~~p~~ 391 (551)
++.|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 999875
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-06 Score=86.59 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=65.8
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC-hHHHHHHHHHHH
Q 048830 38 LSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA-LNKCQELHGFVI 116 (551)
Q Consensus 38 ~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~-~~~a~~~~~~~~ 116 (551)
++.|+.+|+... ..+-. |+++.+..+|++.+.. . |+...|..-+....+.++ .+....+|+..+
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--S-YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--C-CCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 666666666542 22222 8899999999998874 2 888888887777666553 455677888777
Q ss_pred Hh-CC-CCChhHHHHHHHHHHh----CCCHHHHHHHhccCCC
Q 048830 117 RS-GY-ERCVVVSTNLMRGYAA----NGVIEAARSVFDNMPE 152 (551)
Q Consensus 117 ~~-g~-~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~ 152 (551)
.. |. ..+..+|...+..+.. .++++.+.++|++...
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 64 43 3356777777766542 3567888888887754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=79.39 Aligned_cols=99 Identities=12% Similarity=-0.054 Sum_probs=82.9
Q ss_pred CCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 323 LKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 323 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
+.| +...+..+...+.+.|++++|...|++++. .+...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344 345556677778888888888888877443 3888899999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|.+.+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999888653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-07 Score=72.87 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=86.8
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC--CcchHHHHHH
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA--SAGDYVLLAT 400 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 400 (551)
+...+..+...+...|++++|...+++++.. +...|..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4667788888899999999999988875433 7888999999999999999999999999999999 9999999999
Q ss_pred Hhhhc-CChhHHHHHHHHHHhCCC
Q 048830 401 IYACT-KDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 401 ~~~~~-g~~~~a~~~~~~m~~~g~ 423 (551)
+|... |++++|.+.++.......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999876543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=74.98 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=74.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGSC 368 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~ 368 (551)
..+..+...+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|..++++++ |.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34444455555555555555555555432 11234445555566666666666666655532 22667778888888
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
...|++++|...++++++..|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999999888888888776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=76.40 Aligned_cols=113 Identities=8% Similarity=0.045 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~ 367 (551)
..+..+...+...|++++|...|+...+ ..| +...+..+..+|...|++++|.+.+++++. .+...|..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344444455555555555555555432 222 344455555555555555555555554332 266777788888
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
+...|++++|...++++++.+|.++..+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888889999999999898888888888888877664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=76.59 Aligned_cols=115 Identities=7% Similarity=-0.054 Sum_probs=81.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSC 368 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~ 368 (551)
..+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++++. .+...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555555566666666666655542 112445555666666666666666666655332 2677788888888
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCCh
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDE 408 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 408 (551)
...|++++|...++++++..|.++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999888875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=91.89 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=102.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhh
Q 048830 255 DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLV 334 (551)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 334 (551)
+...|..+...|.+.|++++|+..|++..... |+...+ ..+.+...-. .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 34566667777777777777777777776642 322100 0011111000 0134567777
Q ss_pred HHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHH
Q 048830 335 DLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGV 411 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 411 (551)
.+|.+.|++++|+..+++++.. +...|..+..++...|++++|...|+++++++|+++.++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888775543 7888999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHH
Q 048830 412 A-RTRKLI 418 (551)
Q Consensus 412 ~-~~~~~m 418 (551)
. ..++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4 455555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=82.79 Aligned_cols=160 Identities=12% Similarity=-0.035 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--Hhh
Q 048830 228 GNALVDMYAKCGNLDSAFCVFSRMRK---RDV------LSWNSMIVGYGVHGRGDEAISFFKQMLMAGF---HPD--SIT 293 (551)
Q Consensus 228 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 293 (551)
+...+..|...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455666777777777777664431 111 2233345556677777888877777765321 111 236
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---------CHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKLEKALEVINTSSPS---------DPV 359 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~ 359 (551)
++.+...|...|++++|..+|+++.+.....|+ ..++..+...|.+.|++++|.+.+++++.. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 677777777788888888887777632222222 246777777788888888888877765543 156
Q ss_pred HHHHHHHHHHhcCcHHHH-HHHHHHHHhh
Q 048830 360 LWRTLLGSCKIHRNVEIG-EIAMKNLVQL 387 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 387 (551)
+|..+...+...|+.++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 777788888888888888 7777777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.59 E-value=4e-05 Score=72.32 Aligned_cols=216 Identities=6% Similarity=-0.051 Sum_probs=140.8
Q ss_pred HcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----HhC
Q 048830 64 AQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK--ALNKCQELHGFVIRSGYERCVVVSTNLMRGY----AAN 137 (551)
Q Consensus 64 ~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~ 137 (551)
......++|+++++.++..++ -+...|+.--.++...+ ++++++..++.++... +.+..+|+.--.++ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 333444688888888888763 24445666666666777 8888888888888764 45566666555555 445
Q ss_pred ---CCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC----
Q 048830 138 ---GVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHL--EALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA---- 205 (551)
Q Consensus 138 ---g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---- 205 (551)
+++++++.+++++.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 677888888877764 56677777777777777777 8888888887654 2344455544444555554
Q ss_pred --hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHH
Q 048830 206 --LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS-AFCVFSRMRK------RDVLSWNSMIVGYGVHGRGDEAI 276 (551)
Q Consensus 206 --~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~ 276 (551)
++++.+.+..+++.. +-|...|+-+...+.+.|+... +..+..++.+ +++.++..+...|.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 667777777777665 3466777777777777666333 4444444332 24556666666666667777777
Q ss_pred HHHHHHHH
Q 048830 277 SFFKQMLM 284 (551)
Q Consensus 277 ~~~~~m~~ 284 (551)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=82.66 Aligned_cols=119 Identities=9% Similarity=0.045 Sum_probs=88.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH-HHhcCcH--H
Q 048830 302 SHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS-CKIHRNV--E 375 (551)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~-~~~~g~~--~ 375 (551)
...|++++|...++...+. .+.+...+..+...|...|++++|...|++++.. +...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456677777777766543 1224566777777777778888887777764433 77778888888 7788888 9
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 376 IGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+|...++++++.+|.++..+..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999998887643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-06 Score=76.61 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHP--DSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
++..+...|...|++++|...+++.... +-.| ....+..+...+...|++++|...+++..
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555555544431 1011 11234444455555555555555555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-07 Score=75.70 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=78.0
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
..+..+...+.+.|++++|.+.|++++.. +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555667777788888888887765433 788888889999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 048830 405 TKDEEGVARTRKLIKSN 421 (551)
Q Consensus 405 ~g~~~~a~~~~~~m~~~ 421 (551)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.4e-07 Score=79.35 Aligned_cols=116 Identities=13% Similarity=-0.020 Sum_probs=67.5
Q ss_pred hcCCHHHHHH---HHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHhccCCHH
Q 048830 237 KCGNLDSAFC---VFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA----GFHP-DSITFLGLLCGCSHQGLVE 308 (551)
Q Consensus 237 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~ 308 (551)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 444433334566777777777778888888777776651 1122 2345666777777788888
Q ss_pred HHHHHHHHhHHhcCCCC-C----ccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 309 EGVEYFHMMVSRYNLKP-G----IKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88887777655321111 1 23344555555555666555555555
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-07 Score=75.25 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=83.4
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
..+..+...+.+.|++++|...|++++.. +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677888999999999999885543 889999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 048830 405 TKDEEGVARTRKLIKSN 421 (551)
Q Consensus 405 ~g~~~~a~~~~~~m~~~ 421 (551)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.1e-07 Score=73.93 Aligned_cols=96 Identities=8% Similarity=-0.062 Sum_probs=79.6
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
+...+..+...+...|++++|...|++++.. +...|..+...+...|++++|...++++++++|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556667777777777777777777764433 7788888888999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 048830 403 ACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~ 421 (551)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999887653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.8e-07 Score=78.10 Aligned_cols=92 Identities=8% Similarity=-0.006 Sum_probs=48.9
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 405 (551)
.+..+...|.+.|++++|++.|++++.. +...|..+..++...|++++|+..++++++++|+++..|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3344444444555555555544443322 4555555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHh
Q 048830 406 KDEEGVARTRKLIKS 420 (551)
Q Consensus 406 g~~~~a~~~~~~m~~ 420 (551)
|++++|...+++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.5e-07 Score=74.65 Aligned_cols=92 Identities=8% Similarity=-0.080 Sum_probs=72.4
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc-------hHHHH
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG-------DYVLL 398 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 398 (551)
.+..+...+.+.|++++|++.|++++.. +...|..+..+|...|++++|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455677777778888888777765533 7888888888888888999999999998888876643 56778
Q ss_pred HHHhhhcCChhHHHHHHHHHHh
Q 048830 399 ATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+.+|...|++++|.+.+++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888999999998887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-07 Score=77.18 Aligned_cols=102 Identities=11% Similarity=0.027 Sum_probs=75.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcC---CCCHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSS---PSDPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~ 367 (551)
..+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|.+.|++++ |.++..|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 44555666666777777777777776542 34 55666677777777777777777777644 3377888888999
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
+...|++++|...|++++++.|+++....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999998876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-06 Score=77.96 Aligned_cols=132 Identities=7% Similarity=-0.102 Sum_probs=75.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--ccchhhhhHHHhh
Q 048830 262 MIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG--IKHYGCLVDLYGR 339 (551)
Q Consensus 262 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 339 (551)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 444555566666666666555543 243333334444556666666666666544221 0 111 2245556666666
Q ss_pred cCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 340 AGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
.|++++|+..|+++... ....+..+..++...|+.++|...|+++...+|+ +..+..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 66666666666663321 2235556667777778888888888888888777 5555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.2e-07 Score=77.36 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=91.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHH-HhhcCCH-
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDL-YGRAGKL- 343 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~- 343 (551)
...|++++|+..+++..... +.+...+..+...|...|++++|...|+.+.+. .| +...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34567777777777776653 334567777777788888888888888877653 23 45666777777 6778887
Q ss_pred -HHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 344 -EKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 344 -~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
++|...+++++. .+...|..+...+...|++++|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 888888877443 3788888899999999999999999999999999876544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=71.70 Aligned_cols=96 Identities=11% Similarity=0.006 Sum_probs=88.4
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
+...+..+...+.+.|++++|.+.|++++.. +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4667788899999999999999999986655 8899999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 048830 403 ACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 403 ~~~g~~~~a~~~~~~m~~~ 421 (551)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988753
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=69.26 Aligned_cols=106 Identities=10% Similarity=0.016 Sum_probs=57.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHh
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKI 370 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 370 (551)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|...+++++. .+...|..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444455555555555544432 111333444444455555555555555544222 255566666667777
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 401 (551)
.|++++|...++++++.+|.++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777777777777777766666655544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.3e-07 Score=78.30 Aligned_cols=166 Identities=9% Similarity=-0.077 Sum_probs=99.0
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEG 310 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 310 (551)
.....|+++++.+.|+...+ .....|..+...+...|++++|+..|++..... |+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHH
Confidence 33444555555555543222 134456666677777777777777777777632 221100000 00000
Q ss_pred HHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh
Q 048830 311 VEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL 387 (551)
Q Consensus 311 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 387 (551)
. .. .....+..+..+|.+.|++++|...+++++.. +...|..+..++...|++++|...+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01245666777777888888888877764433 7888889999999999999999999999999
Q ss_pred cCCCcchHHHHHHHhhhcCChhHHH-HHHHHHHh
Q 048830 388 EAASAGDYVLLATIYACTKDEEGVA-RTRKLIKS 420 (551)
Q Consensus 388 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 420 (551)
+|.++..+..++.++...|+.+++. ..+..|-.
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988888777 45555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-06 Score=71.33 Aligned_cols=108 Identities=9% Similarity=-0.080 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLG 366 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~ 366 (551)
+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++++. .+...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33344444444444444444444432 2232 33444455555555555555555544322 25666777777
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
++...|++++|...++++++++|+++..+..+..+..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 77888888888888888888888887777666665544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-06 Score=79.63 Aligned_cols=189 Identities=11% Similarity=-0.038 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGY 266 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 266 (551)
...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|.+.|++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455556666677777777777777777654 23577788888888999999999999988765 3567888888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHH
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 345 (551)
...|++++|+..|++..+. .|+. ..+...+..... ..++..... .... ...++......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~-~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEER-RIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHT-CCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHHH-HHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999988764 2322 111112221111 112222222 2221 4444555555554433 689999
Q ss_pred HHHHHhhcCCC---CHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhhc
Q 048830 346 ALEVINTSSPS---DPVLWRTLLGSCKIH-RNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 346 A~~~~~~~~~~---~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 388 (551)
|.+.+++++.. +......+...+... +.+++|..+|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999886665 344444444445444 66888888888887643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=7e-06 Score=75.83 Aligned_cols=182 Identities=10% Similarity=-0.041 Sum_probs=96.9
Q ss_pred cCCChhHHHHHHHHHHHcCCCCCChhhHHHH-------HHHHhccCChHHHHHHHHHHHHhCCCCC--------------
Q 048830 65 QSLSPLQAIFYYNHMLMASLSRPDTFTFTFT-------LKACERVKALNKCQELHGFVIRSGYERC-------------- 123 (551)
Q Consensus 65 ~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g~~~~-------------- 123 (551)
+.++...|.+.|.+.....+ -....|..+ ..++.+.++..++...+...++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 46777777777777777664 234455555 2333333333333333322222 2221
Q ss_pred --------hhHHHHHHHHHHhCCCHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccC--HH
Q 048830 124 --------VVVSTNLMRGYAANGVIEAARSVFDNMPE--RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLD--GF 191 (551)
Q Consensus 124 --------~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~ 191 (551)
....-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 12334456667777888888888877764 433355556667777788888888876443321 111 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 192 TLVCLLSSCAHVGALNMGIFLHRIACEMGFVES--VYVGNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 192 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
.+..+..++...|++++|...+++.......|. ......+..++.+.|+.++|..+|+++
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666666553221132 223344444455555555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=74.60 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=78.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS 367 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~ 367 (551)
..+..+...+...|++++|...|++.++. .| +...|..+..+|.+.|++++|+..|++++.. +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555666666666777777776666543 23 4566667777777777777777777664433 78889999999
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 368 CKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 368 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
+...|++++|...++++++++|+++..+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999987665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.3e-06 Score=71.97 Aligned_cols=96 Identities=7% Similarity=-0.025 Sum_probs=54.4
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
+...|..+...+.+.|++++|+..|++.....+ .+...|..+..++...|++++|...|++.++.. +.++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 444555556666666666666666666665553 345555556666666666666666666666553 33444555555
Q ss_pred HHHHhCCCHHHHHHHhccC
Q 048830 132 RGYAANGVIEAARSVFDNM 150 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m 150 (551)
.+|.+.|++++|...|++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.39 E-value=4.7e-06 Score=70.87 Aligned_cols=125 Identities=10% Similarity=0.016 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 133 (551)
..|..+...+...|++++|+..|++.....+ .+...+..+...+...|++++|...+...++.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4566666777777777777777777776653 355666677777777777777777777777653 3455566666666
Q ss_pred HHhCCCHHHHHHHhccCCC---CChhHHHHH--HHHHHhcCChHHHHHHHHHh
Q 048830 134 YAANGVIEAARSVFDNMPE---RDLVSWNSI--ISCYTQASFHLEALKLYERM 181 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~m~~---~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m 181 (551)
|.+.|++++|...|++..+ .+...+..+ +..+...|++++|+..+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666665542 233333222 22255556666666665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=71.05 Aligned_cols=107 Identities=7% Similarity=-0.068 Sum_probs=70.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSC 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 368 (551)
.+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|...+++++.. +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444455555556666666666655432 23 3455566666666666666666666554332 677788888888
Q ss_pred HhcCcHHHHHHHHHHHHhhc------CCCcchHHHHHHHh
Q 048830 369 KIHRNVEIGEIAMKNLVQLE------AASAGDYVLLATIY 402 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 402 (551)
...|++++|...++++++++ |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88889999999999999888 77776666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=69.46 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=85.9
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
...+..+...+...|++++|.+.+++++.. +...|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345677888899999999999999885433 88999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 048830 404 CTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~~~ 421 (551)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=73.23 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=71.1
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSC 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~ 368 (551)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|++++. .++..|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555566666666666666666542 33 455566666666677777777776665442 3777788888888
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
...|++++|...+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 889999999999999999999887665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5.6e-06 Score=66.27 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRG 133 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 133 (551)
..|..+...+...|++++|+..|+++....+ .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455555555555555555555555554432 234444455555555555555555555555442 2333444444444
Q ss_pred HHhCCCHHHHHHHhcc
Q 048830 134 YAANGVIEAARSVFDN 149 (551)
Q Consensus 134 y~~~g~~~~A~~~~~~ 149 (551)
|.+.|++++|...|++
T Consensus 87 ~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 4444444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=73.15 Aligned_cols=108 Identities=8% Similarity=-0.069 Sum_probs=78.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 371 (551)
..+......+.+.|++++|...|++.++. .|+... . ++. .. -|.+...|..+..++...
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~--~------------~a~---~~-~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPP--E------------EAF---DH-AGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCT--T------------SCC---CH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcc--h------------hhh---hh-ccchHHHHHHHHHHHHHC
Confidence 34555566667777777777777777643 333100 0 000 00 000344888889999999
Q ss_pred CcHHHHHHHHHHHHhh-------cCCCcchH----HHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 372 RNVEIGEIAMKNLVQL-------EAASAGDY----VLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|++++|+..+++++++ +|+++..| ...+.++...|++++|...|++..+
T Consensus 71 gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999 99999999 9999999999999999999998865
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00055 Score=65.36 Aligned_cols=180 Identities=9% Similarity=-0.039 Sum_probs=122.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 048830 56 WNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVK-ALNKCQELHGFVIRSGYERCVVVSTNLMRGY 134 (551)
Q Consensus 56 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 134 (551)
++.+-......+..++|++++++++..++ -+...|+.--..+...+ .+++++.+++.++... +.+..+|+.-..++
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 44444445556667799999999998874 24455676666666777 5999999999998764 56777888777777
Q ss_pred HhC-C-CHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHhhhCCcccCHHHHHHHHHHHH
Q 048830 135 AAN-G-VIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHL--------EALKLYERMRFEDVGLDGFTLVCLLSSCA 201 (551)
Q Consensus 135 ~~~-g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 201 (551)
.+. + +.++++++++++.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 766 6 78899999988876 45667776665555555555 7888888877653 335555665555555
Q ss_pred hcCC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048830 202 HVGA-------LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN 240 (551)
Q Consensus 202 ~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 240 (551)
+.+. ++++.+....+++.. +-|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 5554 466666666666654 3356666666655655554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=9.1e-06 Score=65.64 Aligned_cols=115 Identities=6% Similarity=-0.058 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 53 TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
...|..+...+...|++++|+..|++.....+ .+...+..+...+...|++++|...+....+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455555666666666666666666655543 344555556666666666666666666666543 334445555555
Q ss_pred HHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCC
Q 048830 133 GYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASF 170 (551)
Q Consensus 133 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 170 (551)
+|.+.|++++|...|++..+ .+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555554432 233444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.8e-06 Score=69.79 Aligned_cols=98 Identities=10% Similarity=-0.064 Sum_probs=64.9
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHH
Q 048830 290 DSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLL 365 (551)
Q Consensus 290 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll 365 (551)
+...+..+...+...|++++|...|+...+. .| +...+..+..+|...|++++|...+++++.. +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3445555555666666666666666665542 23 3455666666666666666666666653332 677788888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
.++...|++++|...+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888888876
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.4e-05 Score=73.67 Aligned_cols=230 Identities=13% Similarity=0.012 Sum_probs=117.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHH-HHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 048830 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGF-TLVCLLSSCAHVG-ALNMGIFLHRIACEMGFVESVYVGNALVDMY 235 (551)
Q Consensus 158 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 235 (551)
++.+-....+.+..++|++++.++... .|+.. .++.--.++...+ .++++..+++.+++... -+..+|+.-..++
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 333333444455556777777777653 34433 3444444444555 36677777766666542 2455555555555
Q ss_pred Hhc-C-CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 236 AKC-G-NLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGD--------EAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 236 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
.+. + +++++.++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444 4 56666666666654 24445554444444333333 4555555555432 223334444333333
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcH-----
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNV----- 374 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~----- 374 (551)
+.+... . ....++++++.+++++. .|...|+-+-..+...|+.
T Consensus 213 ~l~~~~-----------------~------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 213 SRPGAE-----------------T------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp TSTTCC-----------------C------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred hccccc-----------------c------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccc
Confidence 333200 0 00014555555544332 2666666655555554432
Q ss_pred ---------------HHHHHHHHHHHhhc------CCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 375 ---------------EIGEIAMKNLVQLE------AASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 375 ---------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.........+.... +.++-+...|+.+|...|+.++|.++++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12222222222221 45666788999999999999999999998853
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=85.12 Aligned_cols=142 Identities=8% Similarity=-0.026 Sum_probs=97.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666666777777777777777776653 1221100 0 000000 000 01356777888
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
+|.+.|++++|+..+++++.. +...|..+..+|...|++++|...|+++++++|+++.++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888875543 88899999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHH
Q 048830 413 R-TRKLIK 419 (551)
Q Consensus 413 ~-~~~~m~ 419 (551)
+ .++.|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 5 445553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-06 Score=68.53 Aligned_cols=96 Identities=8% Similarity=-0.025 Sum_probs=87.3
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC--C----HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS--D----PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
+...+..+...+...|++++|.+.|++++.. + ...|..+...+...|++++|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4567778889999999999999999986665 3 788889999999999999999999999999999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHHhC
Q 048830 400 TIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.1e-06 Score=81.80 Aligned_cols=161 Identities=9% Similarity=-0.140 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHh----hHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-Cccc
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMA-GFHPDSI----TFLGLLCGCSHQGLVEEGVEYFHMMVSRY---NLKP-GIKH 329 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~ 329 (551)
+..++..|...|++++|.+++.++... +..++.. ..+.+...+...|+.+.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555566666666666655554431 1111111 12222223334566666666666554321 1111 1344
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCC-------C--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC---CC----cc
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSP-------S--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA---AS----AG 393 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 393 (551)
+..|...|...|++++|..++++.+. . ...++..++..|...|++++|...+++++...+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 55666777777777777766654221 1 345677777788888888888888888776532 22 23
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 394 DYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
.+..++..+...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56677778888888888888776553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=8.2e-06 Score=78.87 Aligned_cols=119 Identities=11% Similarity=-0.028 Sum_probs=73.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 048830 224 SVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-D---------------VLSWNSMIVGYGVHGRGDEAISFFKQMLMA 285 (551)
Q Consensus 224 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 285 (551)
+...+..+...|.+.|++++|...|++..+ | + ..+|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999998753 2 2 356666666666666666666666666664
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHH
Q 048830 286 GFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKA 346 (551)
Q Consensus 286 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 346 (551)
. +.+...+..+..++...|++++|...|+++.+. .| +...+..+..++.+.|+.++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 223455555666666666666666666655432 23 233333444444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-06 Score=66.95 Aligned_cols=45 Identities=2% Similarity=-0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
..+|..+..++...|++++|...++++++..| ++.....+..+..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55667777778888888888888888888877 4666555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-06 Score=87.87 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=77.9
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHH
Q 048830 300 GCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVE 375 (551)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~ 375 (551)
.+.+.|++++|...|++..+. .| +...|..+..+|.+.|++++|.+.+++++.. +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345566666666666666542 33 3556666666777777777777766664433 6777778888888888888
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHH--hhhcCChhHHHHHHH
Q 048830 376 IGEIAMKNLVQLEAASAGDYVLLATI--YACTKDEEGVARTRK 416 (551)
Q Consensus 376 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 416 (551)
+|+..++++++++|+++..+..++.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888888888777777 777788888888776
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.7e-06 Score=69.71 Aligned_cols=137 Identities=11% Similarity=0.040 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchh
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFH-PDS----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYG 331 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 331 (551)
.++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...++...+...-.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---- 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc----
Confidence 34566666666777777777777666542100 111 244445555555555555555555544321000000
Q ss_pred hhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC------CcchHHHHHHHhhhc
Q 048830 332 CLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA------SAGDYVLLATIYACT 405 (551)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~ 405 (551)
.. ...++..+...+...|++++|...++++++..+. .+..+..++.+|...
T Consensus 86 ------------~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 86 ------------AV-----------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ------------HH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------HH-----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 00 1334555666666777777777777777665321 244677888889999
Q ss_pred CChhHHHHHHHHHHh
Q 048830 406 KDEEGVARTRKLIKS 420 (551)
Q Consensus 406 g~~~~a~~~~~~m~~ 420 (551)
|++++|.+.+++..+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999988887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-06 Score=68.79 Aligned_cols=81 Identities=14% Similarity=-0.025 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHH
Q 048830 340 AGKLEKALEVINTSSPS------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
.|++++|+..|++++.. +...|..+...+...|++++|...++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666666554432 345666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 048830 414 TRKLIKS 420 (551)
Q Consensus 414 ~~~~m~~ 420 (551)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.18 E-value=7e-06 Score=66.57 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=59.2
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCC---CCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC---cchHHHHHHHhh
Q 048830 333 LVDLYGRAGKLEKALEVINTSSP---SDP---VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS---AGDYVLLATIYA 403 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 403 (551)
+...+...|++++|.+.|++++. .+. ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44455556666666666555332 133 456666677777777777777777777777777 566777777777
Q ss_pred hcCChhHHHHHHHHHHh
Q 048830 404 CTKDEEGVARTRKLIKS 420 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~~ 420 (551)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77888877777777655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.18 E-value=5.4e-06 Score=81.19 Aligned_cols=135 Identities=7% Similarity=-0.048 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVD 335 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 335 (551)
..|..+...+.+.|++++|+..|++..+. .|+.. ..... +... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 45666677777777777777777777652 01000 00000 1110 1223 4567888888
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
+|.+.|++++|++.+++++.. +...|..+..+|...|++++|...++++++++|+++..+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887765 78899999999999999999999999999999999999999999999998888776
Q ss_pred H
Q 048830 413 R 413 (551)
Q Consensus 413 ~ 413 (551)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.8e-06 Score=68.87 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF-HPD---- 290 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 290 (551)
..++..+...|...|++++|.+.|++..+ .+ ..++..+...+...|++++|...+++...... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45778889999999999999999988753 22 24788889999999999999999999876311 111
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 291 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
...+..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566667777788888888888777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.5e-06 Score=71.09 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 55788888999999999999999999999999999999999999999999999999999888663
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-06 Score=68.13 Aligned_cols=93 Identities=6% Similarity=-0.027 Sum_probs=75.6
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC-------cchHHHH
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-------AGDYVLL 398 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l 398 (551)
.+..+...+...|++++|...|++++.. +...+..+...+...|++++|...++++++..|.+ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4555666677777777777777664332 67788888888888999999999999999988776 7789999
Q ss_pred HHHhhhcCChhHHHHHHHHHHhC
Q 048830 399 ATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.+|...|++++|.+.++++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.9e-06 Score=65.83 Aligned_cols=106 Identities=5% Similarity=-0.051 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVD 335 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 335 (551)
.++..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..++..++. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 455666666677777777777777666642 223455666666666666666666666666532 221 1111111
Q ss_pred HHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 336 LYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
..+|..+..++...|++++|+..|+++++..|+
T Consensus 83 ----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 234555667777788888888888888877664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=8e-06 Score=83.00 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=76.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCH
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLV 307 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 307 (551)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456677888888888876642 356777777788888888888888888777752 22456677777777778888
Q ss_pred HHHHHHHHHhHHhcCCCC-CccchhhhhHH--HhhcCCHHHHHHHHh
Q 048830 308 EEGVEYFHMMVSRYNLKP-GIKHYGCLVDL--YGRAGKLEKALEVIN 351 (551)
Q Consensus 308 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 351 (551)
++|...|+++.+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888777653 33 33444444444 666777777777776
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.9e-05 Score=76.02 Aligned_cols=191 Identities=9% Similarity=-0.084 Sum_probs=116.4
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCcccC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCc
Q 048830 162 ISCYTQASFHLEALKLYERMRFEDVGLD----------------GFTLVCLLSSCAHVGALNMGIFLHRIACEMG-FVES 224 (551)
Q Consensus 162 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~ 224 (551)
...+.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+.+..+.+.- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999988876543221 1235667777788888888888777766531 1111
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--
Q 048830 225 V----YVGNALVDMYAKCGNLDSAFCVFSRMRK--------R-DVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--GF-- 287 (551)
Q Consensus 225 ~----~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 287 (551)
. .+.+.+...+...|+.+.|..++..... + -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444455566777777777765431 1 1345666777777777777777777776542 11
Q ss_pred CCC-HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 288 HPD-SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 288 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
.|. ..++..++..|...|++++|..+++.......-.++ ...+..++..+...|++++|...|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 235666667777777777777777766543211111 23455556666667777777776666
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.5e-06 Score=74.56 Aligned_cols=146 Identities=12% Similarity=0.005 Sum_probs=75.1
Q ss_pred HHHHHHHcCCCCChHHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCC-------------
Q 048830 25 WLLNSYAISVSSSLSYAQLLFNQIQN---PQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPD------------- 88 (551)
Q Consensus 25 ~li~~~~~~~~g~~~~A~~lf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd------------- 88 (551)
..+...... |+++.|.+.|+.... .....|..+...+...|++++|+..|++........|+
T Consensus 9 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 9 HHSSGRENL--YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred chhhhhhhh--hhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 344444555 777777777764332 24556778888899999999999999999876532121
Q ss_pred -hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHH
Q 048830 89 -TFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISC 164 (551)
Q Consensus 89 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 164 (551)
...+..+..++...|++++|...+...++.. +.+...+..+..+|...|++++|...|++..+ .+...+..+...
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 1344455555555556666655555555542 33444444555555555555555555544321 233344444444
Q ss_pred HHhcCChHH
Q 048830 165 YTQASFHLE 173 (551)
Q Consensus 165 ~~~~g~~~~ 173 (551)
+...++..+
T Consensus 166 ~~~~~~~~~ 174 (198)
T 2fbn_A 166 VNKLKEARK 174 (198)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 444433333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00039 Score=66.06 Aligned_cols=92 Identities=9% Similarity=0.092 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 048830 206 LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG--NLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGR-GDEAISFF 279 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 279 (551)
++++..+++.++... +-+..+|+.-..++.+.| .++++.++++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543 234555555555555555 35666666666553 455666665555566666 46677777
Q ss_pred HHHHHcCCCCCHhhHHHHHH
Q 048830 280 KQMLMAGFHPDSITFLGLLC 299 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~ 299 (551)
+++.+.. +-|...|+....
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ 187 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHH
Confidence 7666653 224444444333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00034 Score=66.41 Aligned_cols=177 Identities=10% Similarity=0.043 Sum_probs=132.7
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCC-HHHHHHHH
Q 048830 241 LDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGR--GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGL-VEEGVEYF 314 (551)
Q Consensus 241 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~ 314 (551)
++++..+++.+.. .+..+|+.-...+...|+ +++++.+++++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777653 577889888888888884 899999999999864 3466777776667777787 68999999
Q ss_pred HHhHHhcCCCC-CccchhhhhHHHhhc--------------CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc-----
Q 048830 315 HMMVSRYNLKP-GIKHYGCLVDLYGRA--------------GKLEKALEVINTSSPS---DPVLWRTLLGSCKIH----- 371 (551)
Q Consensus 315 ~~~~~~~~~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~----- 371 (551)
+.+++. .| |...|+....++.+. +.++++++.+++++.. |...|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999864 34 666676666665554 4588899888876643 999998776666555
Q ss_pred ------CcHHHHHHHHHHHHhhcCCCcchHHHHHHH---hhhcCChhHHHHHHHHHHhC
Q 048830 372 ------RNVEIGEIAMKNLVQLEAASAGDYVLLATI---YACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 372 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~ 421 (551)
+.++++++.++++++++|++.-.+..++.. ....|..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 468999999999999999986555444332 23467788888899888763
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=6.2e-06 Score=66.42 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=65.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCK 369 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~ 369 (551)
+..+...+.+.|++++|...|+..++. .| +...|..+..++...|++++|+..|++++.. +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555666777777777777777643 34 5666677777777777777777777764433 7778888888888
Q ss_pred hcCcHHHHHHHHHHHHhhcCCCc
Q 048830 370 IHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 370 ~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
..|++++|...++++++++|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-06 Score=83.08 Aligned_cols=146 Identities=7% Similarity=-0.106 Sum_probs=81.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777778888889999999999888764 454432 233444444433221 125777888
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh-hhcCChhHH
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY-ACTKDEEGV 411 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 411 (551)
+|.+.|++++|+..+++++.. +...|..+..+|...|++++|...|+++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888875543 7888888999999999999999999999999999888888888774 445667777
Q ss_pred HHHHHHHHhC
Q 048830 412 ARTRKLIKSN 421 (551)
Q Consensus 412 ~~~~~~m~~~ 421 (551)
.++++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7788777543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0001 Score=76.28 Aligned_cols=166 Identities=8% Similarity=-0.032 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC--
Q 048830 241 LDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGR----------GDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG-- 305 (551)
Q Consensus 241 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-- 305 (551)
-++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3456666666553 345566665555555555 788888888888753 224566777677777778
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcC-CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc---------
Q 048830 306 LVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAG-KLEKALEVINTSSPS---DPVLWRTLLGSCKIH--------- 371 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~--------- 371 (551)
+++++...++++.+. .| +...|+.-..++.+.| .++++.+.+++++.. |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 668888888888763 34 6677777777777888 889999999887766 888999888776653
Q ss_pred -----CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 372 -----RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 372 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
+.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999998665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=63.76 Aligned_cols=100 Identities=10% Similarity=0.011 Sum_probs=61.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-c---cchhhhhHHHhhcCCHHHHHHHHhhcCC---CC---HHHHHHHHH
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-I---KHYGCLVDLYGRAGKLEKALEVINTSSP---SD---PVLWRTLLG 366 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~---~~~~~~ll~ 366 (551)
+...+...|++++|...|+.+.+. .|+ . ..+..+..+|.+.|++++|...|++++. .+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 334445555555555555555443 121 1 2445555566666666666666655332 23 556777778
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 367 SCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
++...|++++|...++++++..|+++.......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 888888899999999999988888766554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-06 Score=68.75 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHH
Q 048830 304 QGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEI 379 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~ 379 (551)
.|++++|+..|++.++...-.| +...+..+..+|...|++++|.+.|++++. .+..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666653200023 355666777777777777777777766443 277888888888999999999999
Q ss_pred HHHHHHhhcCCCcchHH
Q 048830 380 AMKNLVQLEAASAGDYV 396 (551)
Q Consensus 380 ~~~~~~~~~p~~~~~~~ 396 (551)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998876544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=7e-06 Score=69.90 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=60.7
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc-chHHHHHHH
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA-GDYVLLATI 401 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 401 (551)
...|..+..+|.+.|++++|+..+++++.. +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777888888888888888888775543 888899999999999999999999999999999987 444444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=77.61 Aligned_cols=148 Identities=10% Similarity=0.032 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK--RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
...+..+...|.+.|++++|...|++..+ |+.. .+...|+.+++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677888999999999999999998653 3222 1223334444433221 136677888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH-HHhcCcHHHH
Q 048830 303 HQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGS-CKIHRNVEIG 377 (551)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~-~~~~g~~~~a 377 (551)
+.|++++|...++..++. .| +...|..+..+|...|++++|...|++++.. +...+..|... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998888753 44 5778888888999999999999999886655 56666666655 3456778888
Q ss_pred HHHHHHHHhhcCCCc
Q 048830 378 EIAMKNLVQLEAASA 392 (551)
Q Consensus 378 ~~~~~~~~~~~p~~~ 392 (551)
...|+++++..|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 899999999888765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.9e-05 Score=59.31 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 048830 54 QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR 117 (551)
Q Consensus 54 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 117 (551)
..|..+...+...|++++|+..|++.....+ .+...+..+..++...|++++|...+++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444444555555555555555444432 2333444444444444444444444444444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=3e-05 Score=78.42 Aligned_cols=121 Identities=7% Similarity=-0.078 Sum_probs=87.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcC--CCC----CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----------CHHHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYN--LKP----GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-----------DPVLWRT 363 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ 363 (551)
+...|++++|..++++.++... +-| ...+++.|..+|...|++++|+.++++++.. ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766654321 112 2456677777777777777777777664422 4566788
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHh-----hcCCCcc---hHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQ-----LEAASAG---DYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
|...|...|++++|+.+++++++ ++|+.|. ....|..++...|++++|..++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999888886 3566654 4568888999999999999999999864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.9e-05 Score=74.35 Aligned_cols=112 Identities=6% Similarity=-0.060 Sum_probs=82.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 372 (551)
.+..+...+.+.|++++|...|++.++.. |.. ......+++.+.- +.+..+|..+..+|...|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~~~----~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAKLQ----PVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGGGH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 45666666777777777777777665421 000 0000111111110 116788999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 288 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=66.40 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------H-----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD--------S-----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (551)
..+......+...|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..++..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 45667778899999999999999999985 444 1 25666666677777777777766655431
Q ss_pred CCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHH----HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 324 KPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLW----RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
|++..+. +...| .....++...|++++|+..|+++++++|++...+.
T Consensus 87 --------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 87 --------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp --------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred --------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 2222222 66677 88899999999999999999999999999876554
Q ss_pred HH
Q 048830 397 LL 398 (551)
Q Consensus 397 ~l 398 (551)
-+
T Consensus 141 ~~ 142 (159)
T 2hr2_A 141 GK 142 (159)
T ss_dssp TH
T ss_pred HH
Confidence 33
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.7e-06 Score=64.60 Aligned_cols=90 Identities=6% Similarity=-0.088 Sum_probs=70.9
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC------cchHHH
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS------AGDYVL 397 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 397 (551)
...+..+...+.+.|++++|.+.|++++.. +...|..+..++...|++++|...++++++++|++ +..+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345566777777788888888777764433 78888899999999999999999999999999998 777888
Q ss_pred HHHHhhhcCChhHHHHHHH
Q 048830 398 LATIYACTKDEEGVARTRK 416 (551)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~ 416 (551)
++.++...|++++|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888888887776655443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=4.8e-05 Score=58.66 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
++..|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999999999999999999999999999999998765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.3e-05 Score=62.14 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHHHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 346 ALEVINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 346 A~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
|.+.|++++. .+...|..+...+...|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444333 38888999999999999999999999999999999999999999999999999999999988765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.9e-05 Score=59.33 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=61.0
Q ss_pred ccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 327 IKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
...+..+...+...|++++|...+++++.. +...|..+...+...|++++|...++++++++|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666677777777777777664332 67778888888888899999999999999999998888888888876
Q ss_pred hcC
Q 048830 404 CTK 406 (551)
Q Consensus 404 ~~g 406 (551)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.79 E-value=5.9e-05 Score=76.18 Aligned_cols=65 Identities=8% Similarity=-0.065 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|+++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999999999999999999999999987743
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=9.8e-06 Score=67.49 Aligned_cols=84 Identities=7% Similarity=-0.019 Sum_probs=64.6
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHhhcCCCcchHHHHHHHhhh
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRN----------VEIGEIAMKNLVQLEAASAGDYVLLATIYAC 404 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 404 (551)
.+.+.+++|.+.+++++.. +...|..+..++...++ +++|+..|+++++++|+++.+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3445566666665553322 66666666666666554 5699999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhC
Q 048830 405 TK-----------DEEGVARTRKLIKSN 421 (551)
Q Consensus 405 ~g-----------~~~~a~~~~~~m~~~ 421 (551)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999998774
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00023 Score=58.56 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHH
Q 048830 306 LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIA 380 (551)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~ 380 (551)
++++|..+|++..+. + .|+. . |..+|...+.+++|.++|+++... ++..+..|...|.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 445555555555443 2 1211 1 555555555555566666554444 56666666666655 5666667776
Q ss_pred HHHHHhhcCCCcchHHHHHHHhhh----cCChhHHHHHHHHHHhCCC
Q 048830 381 MKNLVQLEAASAGDYVLLATIYAC----TKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 381 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 423 (551)
++++.+. .++..+..|+.+|.. .++.++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 6666655 356667777777777 6777777777777666553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00024 Score=53.74 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 356 SDPVLWRTLLGSCKIHRN---VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 356 ~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
.|+..+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 377888888888765555 79999999999999999999999999999999999999999999987654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00072 Score=68.32 Aligned_cols=85 Identities=6% Similarity=-0.067 Sum_probs=41.1
Q ss_pred HHcCCChhHHHHHHHHHHHc-----CCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CC-ChhHHHH
Q 048830 63 FAQSLSPLQAIFYYNHMLMA-----SLSRPDT-FTFTFTLKACERVKALNKCQELHGFVIRS-----GY-ER-CVVVSTN 129 (551)
Q Consensus 63 ~~~~g~~~~A~~l~~~m~~~-----~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~ 129 (551)
+..+|++++|+.++++.+.. |..+|+. .+++.|..+|...|++++|..++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666665432 2111222 24555566666666666666665555432 10 01 1223444
Q ss_pred HHHHHHhCCCHHHHHHHh
Q 048830 130 LMRGYAANGVIEAARSVF 147 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~ 147 (551)
|...|...|++++|+.++
T Consensus 399 La~~~~~~G~~~eA~~~~ 416 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMI 416 (490)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 444444445444444444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=71.08 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=83.8
Q ss_pred HHHhhcCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh-----cCCCc---chH
Q 048830 335 DLYGRAGKLEKALEVINTSSPS-----------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-----EAASA---GDY 395 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 395 (551)
.-+.+.|++++|++++++++.. ...+++.|+.+|...|++++|+.+++++++. +|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777777654432 3566788888888889999999888888863 45554 468
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHH
Q 048830 396 VLLATIYACTKDEEGVARTRKLIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAK 466 (551)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 466 (551)
..|+.+|...|++++|..++++..+--.. .-...||...++...+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999887641110 113468999999888888777765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=57.36 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=67.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC------hh
Q 048830 52 QTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERC------VV 125 (551)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~ 125 (551)
+...|..+...+...|++++|+..|++.....+ .+...+..+..++...|++++|...++..++.. +.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 345677777788888888888888888877664 356677777778888888888888888877643 222 44
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhccCC
Q 048830 126 VSTNLMRGYAANGVIEAARSVFDNMP 151 (551)
Q Consensus 126 ~~~~li~~y~~~g~~~~A~~~~~~m~ 151 (551)
.+..+..++...|+.+.|...|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 55556666666677666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0011 Score=54.40 Aligned_cols=110 Identities=14% Similarity=0.004 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----cCCHHH
Q 048830 270 GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----AGKLEK 345 (551)
Q Consensus 270 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 345 (551)
+++++|+..|++..+.| .|+.. |...|...+.+++|..+|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 666777778888899999988764 356677788888887 889999
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhc
Q 048830 346 ALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLE 388 (551)
Q Consensus 346 A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 388 (551)
|.++|+++... ++..+..|...|.. .+|.++|...++++.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999997766 88889999999988 899999999999998875
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=6.2e-05 Score=62.66 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCC---CHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhhcCCCcc
Q 048830 343 LEKALEVINTSSPS---DPVLWRTLLGSCKIH-----------RNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 343 ~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
+++|+..|++++.. +...|..+..+|... |++++|+..|+++++++|+++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 34666666665543 667777777777765 4899999999999999999753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00054 Score=51.04 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888899999999999999999999999999999999999999999999999999988763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00038 Score=54.89 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=41.9
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+...+..+...|...|++++|...|++++.. +...|..+..++...|++++|...+++++++.|.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3455555666666666666666666553322 5666777777777777777777777777776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.014 Score=60.26 Aligned_cols=172 Identities=8% Similarity=-0.074 Sum_probs=118.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC----------hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 048830 67 LSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKA----------LNKCQELHGFVIRSGYERCVVVSTNLMRGYAA 136 (551)
Q Consensus 67 g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 136 (551)
...++|++.++++....+ -+...|+.--.++...++ ++++...++.+++.. +.+..+|+.-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334577888888888774 244456555555555555 788888888888764 5677788888888888
Q ss_pred CC--CHHHHHHHhccCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhc-------
Q 048830 137 NG--VIEAARSVFDNMPE---RDLVSWNSIISCYTQAS-FHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHV------- 203 (551)
Q Consensus 137 ~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------- 203 (551)
.| +++++.+.++++.+ +|..+|+.-...+.+.| .++++++.+.++.+.. .-|...|.....++...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 88 66888888888765 56778888777777778 7888888888887654 33555565555555442
Q ss_pred -------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 048830 204 -------GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 204 -------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 243 (551)
+.++++.+.+..+++.. +-+...|+-+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 44677777777777654 3356677777666666665433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00054 Score=68.06 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHhhcCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh-----cCCCc---chHHHHHH
Q 048830 340 AGKLEKALEVINTSSPS-----------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQL-----EAASA---GDYVLLAT 400 (551)
Q Consensus 340 ~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 400 (551)
.|++++|+.++++++.. -..+++.|..+|...|++++|+.+++++++. +|++| ..|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777776653321 3566788888888889999999998888863 45554 46889999
Q ss_pred HhhhcCChhHHHHHHHHHHh
Q 048830 401 IYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~ 420 (551)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=50.40 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=50.9
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPV-LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
....+.+.|++++|.+.|++++.. +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677788888888888764433 677 888888889999999999999999999999988776
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.04 Score=43.51 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=103.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 345 (551)
+.-.|..++..++..+.... .+..-|+-++.-....-+-+-..+.++..-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34568888888888887764 24555666665555555666666666666433222 23555555
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 346 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
...-+-. +..+.......+......|..+.-..++..++..+|.+|.....++++|.+.|+..+|.+++.++-++|++
T Consensus 80 Vi~C~~~-~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVI-NNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHH-TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-hcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555555 55566667777888888999999999999988878888999999999999999999999999999999985
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0019 Score=49.46 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
...+..+..+|.+.|++++|.+.|++..+ .+..+|..+..+|...|++++|+..|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555555554432 233445555555555555555555555444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=64.55 Aligned_cols=92 Identities=13% Similarity=0.007 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC-----------CHHHHHHHHH
Q 048830 304 QGLVEEGVEYFHMMVSRYN--LKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSPS-----------DPVLWRTLLG 366 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~ 366 (551)
.|++++|..++++.++... +-|+ ..+++.|..+|...|++++|+.++++++.. ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566667666666554321 1221 355666777777777777777776654422 4566778888
Q ss_pred HHHhcCcHHHHHHHHHHHHh-----hcCCCcchH
Q 048830 367 SCKIHRNVEIGEIAMKNLVQ-----LEAASAGDY 395 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 395 (551)
.|...|++++|+.+++++++ ++|+.|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 88888888888888888886 357766543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0017 Score=49.28 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=53.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhhcCCCcc-hHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 364 LLGSCKIHRNVEIGEIAMKNLVQLEAASAG-DYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 364 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
....+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456677889999999999999999999999 99999999999999999999999987643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.023 Score=61.59 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=22.1
Q ss_pred HhCCCHHHHHH-HhccCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 048830 135 AANGVIEAARS-VFDNMPERDLVSWNSIISCYTQASFHLEALKLY 178 (551)
Q Consensus 135 ~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 178 (551)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecC
Confidence 34566666666 5544330 112255555566666666666544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.003 Score=62.74 Aligned_cols=98 Identities=12% Similarity=-0.064 Sum_probs=61.5
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcC--CCCC----ccchhhhhHHHhhcCCHHHHHHHHhhcCC-------C----CHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYN--LKPG----IKHYGCLVDLYGRAGKLEKALEVINTSSP-------S----DPVLW 361 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~ 361 (551)
..+...|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.+++++++ . ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334455666666666666654321 1121 34566666667777777777766665332 2 45567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh-----hcCCCcchHH
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQ-----LEAASAGDYV 396 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 396 (551)
+.|...|...|++++|+.+++++++ ++|+.|.+-.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 7788888888888888888888876 3677765443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.012 Score=56.13 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++.+|..+...+...|++++|...++++++++|. ...|..++.++.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666655555556666666666666666643 455566666666666666666666655543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.065 Score=57.98 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=99.6
Q ss_pred HHHHcCCChhHHHH-HHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 048830 61 RAFAQSLSPLQAIF-YYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGV 139 (551)
Q Consensus 61 ~~~~~~g~~~~A~~-l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 139 (551)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+ +.. .-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i--~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V--EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C--CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhc-----C--CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence 33445677777766 4421 1 313334667777777888888776542 221 12345677899
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 048830 140 IEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEM 219 (551)
Q Consensus 140 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (551)
+++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....
T Consensus 668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999987774 567899999999999999999999988753 344555555567776666665555554
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 048830 220 GFVESVYVGNALVDMYAKCGNLDSAFCVFSR 250 (551)
Q Consensus 220 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 250 (551)
|. ++.-..+|.+.|++++|.+++.+
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 41 23334456667777777666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0061 Score=55.74 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcCCC-----CHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHhhcCCC-cchHHHHHHHhhhc-CChhH
Q 048830 343 LEKALEVINTSSPS-----DPVLWRTLLGSCKI-----HRNVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACT-KDEEG 410 (551)
Q Consensus 343 ~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 410 (551)
...|...+++++.. +...|..|...|.. -|+.++|+..|+++++++|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554443 45578888888887 499999999999999999975 99999999999995 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 048830 411 VARTRKLIKSNGIKTTPG 428 (551)
Q Consensus 411 a~~~~~~m~~~g~~~~~~ 428 (551)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876664343
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.015 Score=47.69 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhhc-C-CCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHR---NVEIGEIAMKNLVQLE-A-ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+.-.+..++.+.+ +.+++..+++.+++.+ | .+...+..|+-+|.+.|++++|.++++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 5555556666666655 5557777777777776 5 3456667777777777777777777777755
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.84 Score=47.16 Aligned_cols=243 Identities=8% Similarity=-0.041 Sum_probs=118.1
Q ss_pred HHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC--
Q 048830 128 TNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA-- 205 (551)
Q Consensus 128 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-- 205 (551)
+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|......+-..| .........++..+.+.|.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4445556666777776666665 32334333445555666666666666555554443 2222333444444443332
Q ss_pred ----------------hHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh---HHHHHHHH
Q 048830 206 ----------------LNMGIFLHRIACEMGFVESV-YVGNALVDMYAKCGNLDSAFCVFSRMRKRDVL---SWNSMIVG 265 (551)
Q Consensus 206 ----------------~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~ 265 (551)
...|..+... +.++. .....++..+.+- ..+....... .++.. .+..-+.-
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~-----l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQ-----MPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFAS 224 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHT-----CCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHh-----CCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHH
Confidence 2222222211 11221 2223333333322 2222222222 12211 11112223
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCCCHh--hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCC
Q 048830 266 YGVHGRGDEAISFFKQMLMAG-FHPDSI--TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGK 342 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 342 (551)
+.+ .+.+.|..+|....... +.+... ....+.......+...++...+...... .++.....-.+....+.|+
T Consensus 225 lar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTC
T ss_pred HHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCC
Confidence 333 37788888888876543 222221 1222333334445345566666654332 2232223334444457789
Q ss_pred HHHHHHHHhhcCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 343 LEKALEVINTSSPS----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 343 ~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
++.|...|+. |+. .....-=+..+....|+.++|..+|+++.+
T Consensus 301 ~~~a~~~~~~-l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLAR-LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHH-SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-ccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999988 765 222222344566778888888888888864
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.018 Score=54.95 Aligned_cols=155 Identities=10% Similarity=-0.047 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhc---cC-----CHH
Q 048830 243 SAFCVFSRMRKRDVLSWNSMIVGYG--VHGR---GDEAISFFKQMLMAGFHPDS-ITFLGLLCGCSH---QG-----LVE 308 (551)
Q Consensus 243 ~A~~~~~~~~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~---~g-----~~~ 308 (551)
++...... ...+..+|...+.+.. ..++ ..+|..+|++..+. .|+. ..+..+..+|.. .+ ...
T Consensus 182 e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 182 MQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp HHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 33334433 3357788888887644 3333 57899999999985 6764 455555555431 11 111
Q ss_pred HHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 048830 309 EGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQ 386 (551)
Q Consensus 309 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 386 (551)
.....++........+.+..+|..+...+...|++++|...+++++.. +...|..+...+...|+.++|.+.+++++.
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 111222221111122446788888888788889999999999996665 666666777888999999999999999999
Q ss_pred hcCCCcchHHHHHHH
Q 048830 387 LEAASAGDYVLLATI 401 (551)
Q Consensus 387 ~~p~~~~~~~~l~~~ 401 (551)
++|..+ +|...-++
T Consensus 339 L~P~~~-t~~~~~~l 352 (372)
T 3ly7_A 339 LRPGAN-TLYWIENG 352 (372)
T ss_dssp HSCSHH-HHHHHHHS
T ss_pred cCCCcC-hHHHHhCc
Confidence 999865 55544433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00038 Score=67.80 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=148.9
Q ss_pred CCccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 048830 18 AHEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97 (551)
Q Consensus 18 ~~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~ 97 (551)
-.+.+|..|-.++... +++.+|..-|=+ ..|...|..+|....+.|.+++-+..+.-.++. . -++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~--~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~--ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQK--GMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTS--SSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C--CSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHcc--CchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h--cccccHHHHHH
Confidence 3566777888888777 777777766633 446666778888888888888887777544433 3 23444456788
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCC------------------------C
Q 048830 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPE------------------------R 153 (551)
Q Consensus 98 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------~ 153 (551)
+|++.+++.+-++++ -.||..-...+.+-|...|.++.|.-+|..+.. .
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888776654443 245655556677778888888888888766642 3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVD 233 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 233 (551)
++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-..+++.-... -.....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 566788877788777777665443322221 111 1122334456666666666666654421 1345667777777
Q ss_pred HHHhcCCHHHHHHHHHhcCC----C-------CHhHHHHHHHHHHhcCChHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK----R-------DVLSWNSMIVGYGVHGRGDEAIS 277 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 277 (551)
.|+|- ++++-.+.++-... | ....|.-++-.|..-.+++.|..
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 77765 44444444433221 1 34567778888887777776653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.32 E-value=5.1e-06 Score=80.56 Aligned_cols=262 Identities=10% Similarity=0.044 Sum_probs=172.3
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH 202 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 202 (551)
.+.+|..|..++.+.|++.+|++.|-+. .|+..|..+|.+..+.|.+++-+.++...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3456777788888888888777766443 455567778888888888888888776665543233 333467777877
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 203 VGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 203 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+.. |..|...+.+.|++.+|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh-
Confidence 777655444332 35555556677777777877777777776553 33344556667777766543332
Q ss_pred HHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHH
Q 048830 283 LMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPV 359 (551)
Q Consensus 283 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 359 (551)
.-+..||-.+-.+|...+.+..|.-.--.+ ...+.....++..|-..|.+++-+.+++.++.. ...
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLni------IvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHH------HCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchh------cccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 346678888889999998887765543333 234556778899999999999999999987755 888
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh-hc-CC------CcchHHHHHHHhhhcCChhHHHH
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQ-LE-AA------SAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
+++-|.-.|.+.. .++-.+.++.... ++ |. ....|.-+.-.|.+-..|+.|..
T Consensus 265 mFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 265 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8999998888874 3444343333222 22 22 23455566666666666665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.008 Score=46.30 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHH
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLL 398 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 398 (551)
...++..|..++.+.|+++.|...+++++++.|+++.+...+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 456778888999999999999999999999999987765544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.021 Score=42.88 Aligned_cols=68 Identities=4% Similarity=-0.093 Sum_probs=51.5
Q ss_pred CCccchhhhhHHHhhcCC---HHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Q 048830 325 PGIKHYGCLVDLYGRAGK---LEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASA 392 (551)
Q Consensus 325 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 392 (551)
.+...+..+..++...++ .++|..++++++.. ++..+..+...+...|++++|...++++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 355666666666654444 67888888775544 778888888888999999999999999999988843
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.52 Score=39.62 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEY 313 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 313 (551)
...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777776665 3566777777777777777777777776542 22333344445665554444
Q ss_pred HHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 314 FHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 314 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
-+....+ | -++.-...+.-.|+++++.+++.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333221 1 134444555566777777777766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.97 Score=37.97 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=64.5
Q ss_pred HHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHH
Q 048830 132 RGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIF 211 (551)
Q Consensus 132 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 211 (551)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456777777777776665 3566788888888888888888888876643 3334444555666666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 212 LHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 212 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
+-+.....|- ++.-...+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5554444431 2333444555677777777766544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.066 Score=43.90 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHH
Q 048830 273 DEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG---LVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEV 349 (551)
Q Consensus 273 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 349 (551)
..+.+-|.+....|. ++..+-..+..++++++ ++++|..+|+...+. . .|+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~----------------------- 68 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE----------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH-----------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc-----------------------
Confidence 344445555444442 45555555555666655 444666666655543 1 110
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 350 INTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 350 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
.+...+..|.-+|.+.|++++|.+.++++++.+|++..+..
T Consensus 69 ------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 69 ------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp ------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 02345556777889999999999999999999999865443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.1 Score=39.91 Aligned_cols=64 Identities=9% Similarity=-0.117 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc-------CCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLE-------AASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..-+..|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..+++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455677888888899999999999988753 23466899999999999999999999998875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=2.2 Score=39.03 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhc-----CCHHHHHHHHHhcCC--C--CHhHHHHHHHHHHhc-CChHHH
Q 048830 207 NMGIFLHRIACEMGFV-ESVYVGNALVDMYAKC-----GNLDSAFCVFSRMRK--R--DVLSWNSMIVGYGVH-GRGDEA 275 (551)
Q Consensus 207 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~-----g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~~~A 275 (551)
..|+..++++++.... .+...|..|...|.+. |+.++|.+.|++..+ | ++.++......+++. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555555554311 1245667777777773 777777777777652 3 366677777777774 778888
Q ss_pred HHHHHHHHHcCCC--CCHh
Q 048830 276 ISFFKQMLMAGFH--PDSI 292 (551)
Q Consensus 276 ~~~~~~m~~~g~~--p~~~ 292 (551)
.+.+++....... |+..
T Consensus 260 ~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHcCCCCCCCChh
Confidence 8888888776544 5443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.71 Score=36.31 Aligned_cols=38 Identities=16% Similarity=-0.030 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHH
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVL 397 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 397 (551)
....|.-++.+.|+++.|.+.++.+++.+|+|..+...
T Consensus 76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34456778899999999999999999999998765543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.29 Score=51.54 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=51.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
...|...|+++.|+.+.++++..-|.+-.+|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4667889999999999999999999999999999999999999999999998873
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.76 Score=44.64 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH-----hCCCccCCc
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK-----SNGIKTTPG 428 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 428 (551)
....++.++...|+.+++...++.++..+|-+...|..|+.+|...|+..+|.+.|+... +.|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344567788889999999999999999999999999999999999999999999998764 358888653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.36 Score=37.97 Aligned_cols=64 Identities=11% Similarity=-0.065 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhhc-C-CCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 357 DPVLWRTLLGSCKIHRNVEI---GEIAMKNLVQLE-A-ASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 357 ~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+--.+..++.+..+... ++.+++.+++.+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444455556665555444 888888888776 5 3455677899999999999999999999876
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=3.2 Score=32.90 Aligned_cols=85 Identities=11% Similarity=-0.051 Sum_probs=56.8
Q ss_pred hCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 136 ANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 136 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
.||++......+-.+. .+....+.-+..+...|+-++-.+++..+.. +.+|++.....+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444444332 2334456667777788888888888877544 3467777778888888888888888888888
Q ss_pred HHHhCCC
Q 048830 216 ACEMGFV 222 (551)
Q Consensus 216 ~~~~g~~ 222 (551)
+-+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8887754
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.44 E-value=6.8 Score=36.34 Aligned_cols=190 Identities=11% Similarity=0.024 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHH----HH
Q 048830 105 LNKCQELHGFVIRSGYE-RCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKL----YE 179 (551)
Q Consensus 105 ~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~ 179 (551)
+++.++-++.-++.|-- --...|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 44444444444444411 0123456677778899999999988643 23445666776665554 45
Q ss_pred HhhhCCcccCHHHHHHHHHHHHhcCChH-HHHHHHHHHH----HhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 180 RMRFEDVGLDGFTLVCLLSSCAHVGALN-MGIFLHRIAC----EMGF--VESVYVGNALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 180 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
...+.+++++..+...++..+.....-+ .=..+...++ +.|- .-++.....+...|.+.|++.+|+..|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5566788888888888887776533211 1123333333 3332 2467888999999999999999999887433
Q ss_pred CCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048830 253 KRDVLSWNSMIVGYGVH---GRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSR 320 (551)
Q Consensus 253 ~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 320 (551)
..|...+..|+.-+... |...++-- ..-..++. |...+++..|..+|+...++
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 33555665555544443 44433211 11222332 44568899999998887654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.75 E-value=0.32 Score=39.36 Aligned_cols=54 Identities=6% Similarity=-0.154 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCcc
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIKT 425 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 425 (551)
+|.++|..+|+.++.+...-+..|...+..-.++|+...|++++.+....+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 678888888888877754446677788888888899999999998887766554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.00 E-value=0.89 Score=36.83 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=62.8
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 048830 253 KRDVLSWNSMIVGYGVHGRG------DEAISFFKQMLMAGFHPDSI-TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP 325 (551)
Q Consensus 253 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 325 (551)
..|..+|-..+......|++ ++..++|++.... ++|+.. .+...+.-+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr---------------------- 66 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR---------------------- 66 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH----------------------
Confidence 35677777777777777777 6667777766664 455421 11111111110
Q ss_pred CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 326 GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
|. .+...++.++|.++|+.+... =..+|-.....-.++|+++.|..++.+++.+.|....
T Consensus 67 ----YA----~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 67 ----FA----ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp ----HH----HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred ----HH----HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 00 001124444455554442111 2456667777777889999999999999998877543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.72 E-value=1.4 Score=36.48 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=20.9
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHH
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLG 366 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~ 366 (551)
--+..+|.+.|++++|+.+++. +|. ++.+--.|..
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~-Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDG-IPSRQRTPKINMLLAN 163 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-SCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHhc-CCchhcCHHHHHHHHH
Confidence 3455666677777777777777 665 4444444433
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.46 E-value=3.3 Score=30.68 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778877777777653 33333333456778999999999999999999999988765 46788888888887777
Q ss_pred HcCCCCCHhhHH
Q 048830 284 MAGFHPDSITFL 295 (551)
Q Consensus 284 ~~g~~p~~~t~~ 295 (551)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 55555554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.09 E-value=3 Score=30.80 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048830 204 GALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQML 283 (551)
Q Consensus 204 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 283 (551)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778877777776653 33333333456778999999999999999999999988765 47888888888887887
Q ss_pred HcCCCCCHhhHH
Q 048830 284 MAGFHPDSITFL 295 (551)
Q Consensus 284 ~~g~~p~~~t~~ 295 (551)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 776 55555554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.99 E-value=15 Score=34.36 Aligned_cols=168 Identities=11% Similarity=0.041 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHH----HHhhhCCcccCHHHHHHHHHHHH
Q 048830 126 VSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLY----ERMRFEDVGLDGFTLVCLLSSCA 201 (551)
Q Consensus 126 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 201 (551)
.|.++..=|.+.+++++|++++-. =...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778889999999887532 233455666665554443 44556677888887777777776
Q ss_pred hcCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHH
Q 048830 202 HVGALN-MGIFLHRIAC----EMG--FVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDE 274 (551)
Q Consensus 202 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 274 (551)
....-+ .=..+...++ +.| ..-|+.....+...|.+.+++.+|+..|---.++.+..+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 554311 1122333333 333 33467788889999999999999999985323233356655554444433321
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 275 AISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 275 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
.+|...-..++. |...+++..|..+++...+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222333333 4556788999888777665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.66 E-value=26 Score=37.80 Aligned_cols=50 Identities=14% Similarity=0.005 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHHHHHHHhcC
Q 048830 202 HVGALNMGIFLHRIACEMGFVESVYVG--NALVDMYAKCGNLDSAFCVFSRMR 252 (551)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~~~ 252 (551)
..|+.+.+..+.+.+... ..|..... .++.-+|+..|+.....+++..+.
T Consensus 536 ~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 445555555555554432 11222111 123334555555555555555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.85 E-value=25 Score=39.37 Aligned_cols=113 Identities=11% Similarity=-0.039 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--------------------------CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048830 229 NALVDMYAKCGNLDSAFCVFSRMRKR--------------------------DVLSWNSMIVGYGVHGRGDEAISFFKQM 282 (551)
Q Consensus 229 ~~li~~y~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 282 (551)
-.+..+|..+|++++|.+.|.+.... -..-|..++..|.+.|.++.+++.-+..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666777777777777665310 0012444555566666666666555555
Q ss_pred HHcCCCCCH----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHH
Q 048830 283 LMAGFHPDS----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344 (551)
Q Consensus 283 ~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 344 (551)
.+....-+. ..|..+..++...|++++|...+-.+... . --......||..++..|.++
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChh
Confidence 443211111 13455556666666666666655544321 1 12233444555455444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.23 E-value=7.4 Score=28.80 Aligned_cols=88 Identities=9% Similarity=0.025 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 103 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
...++|.-+-+.+...|- ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+..+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778777777776552 22232333456789999999999999999999999987765 47888888888777777
Q ss_pred hCCcccCHHHHHH
Q 048830 183 FEDVGLDGFTLVC 195 (551)
Q Consensus 183 ~~~~~p~~~t~~~ 195 (551)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.13 E-value=24 Score=34.66 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCC--CC--c
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMA--GFHPD---SITFLGLLCGCSHQGLVEEGVEYFHMMVSRY-NLK--PG--I 327 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--p~--~ 327 (551)
....|...|...|++.+|..++..+... |..+. ...+..-+..|...+++.+|..++.++.... ... |+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3455778888899999999999888653 22222 1345666778889999999999998874321 122 22 3
Q ss_pred cchhhhhHHHhhcCCHHHHHHHHhh
Q 048830 328 KHYGCLVDLYGRAGKLEKALEVINT 352 (551)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~ 352 (551)
..|.+.+..+...+++.+|...|.+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5677888888899999999888777
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.89 E-value=3.6 Score=32.93 Aligned_cols=48 Identities=6% Similarity=-0.041 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHhhcCCC-cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 373 NVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+++.+++.++..+|.. ......|+-++.+.|++++|+++.+.+.+
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3456666666666666643 33444566677777777777777766654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.84 E-value=7.8 Score=28.71 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 048830 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMR 182 (551)
Q Consensus 103 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 182 (551)
...++|.-+-+.+...|- ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456778877777776552 22232333456789999999999999999999999987765 46788888887777777
Q ss_pred hCCcccCHHHHHH
Q 048830 183 FEDVGLDGFTLVC 195 (551)
Q Consensus 183 ~~~~~p~~~t~~~ 195 (551)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.84 E-value=4.1 Score=36.67 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=72.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc----cchhhhhHHHhhc
Q 048830 265 GYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI----KHYGCLVDLYGRA 340 (551)
Q Consensus 265 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~ 340 (551)
...+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+ +.|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4556788888888777777653 44555566677788888888888888777753 34442 233333332
Q ss_pred CCHHHHH-HHHhh-cCCC---CHHHHHHH-HHHH--HhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 341 GKLEKAL-EVINT-SSPS---DPVLWRTL-LGSC--KIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 341 g~~~~A~-~~~~~-~~~~---~~~~~~~l-l~~~--~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
+..+ ++|.. ..|. .+..|..+ +.+. ...|+.+.|..+-.++++.-|..++
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1221 23332 1222 34445444 4443 4468899999999988888777655
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.76 E-value=2.9 Score=34.50 Aligned_cols=122 Identities=11% Similarity=0.050 Sum_probs=61.6
Q ss_pred cCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCc-------cchhhhhHHHhhcCCHHHHHHHHhhcCC
Q 048830 285 AGFHPDS--ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGI-------KHYGCLVDLYGRAGKLEKALEVINTSSP 355 (551)
Q Consensus 285 ~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 355 (551)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|++ .++..+.+++...|++..|...|++++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555543 334455566677777777777777655443333442 2445566677777777777777766322
Q ss_pred C------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHH
Q 048830 356 S------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLI 418 (551)
Q Consensus 356 ~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 418 (551)
. +..+..++. ...... .-.. .+.+...-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc----ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 111110000 000000 0000 0122245567899999999999999998764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.23 E-value=26 Score=33.66 Aligned_cols=163 Identities=11% Similarity=-0.046 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCHhHH--
Q 048830 190 GFTLVCLLSSCAHVGALNMGIFLHRIACEM-GFVE---SVYVGNALVDMYAKCGN-LDSAFCVFSRMRK---RDVLSW-- 259 (551)
Q Consensus 190 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~-- 259 (551)
......+...|.+.|+.++...++...... +..+ .......|++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888777765431 1111 23455677777766433 3333333333221 112233
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----hhHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCCccc
Q 048830 260 ----NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDS-----ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYN-LKPGIKH 329 (551)
Q Consensus 260 ----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~ 329 (551)
.-++..|...|++.+|..++.++.+.=-..|. ..+..-+..|...+++.++...+.......+ +.|++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 14677888899999998888888773222222 2344556677788888888888887754321 2233222
Q ss_pred ----hhhhhHHHh-hcCCHHHHHHHHhh
Q 048830 330 ----YGCLVDLYG-RAGKLEKALEVINT 352 (551)
Q Consensus 330 ----~~~li~~~~-~~g~~~~A~~~~~~ 352 (551)
..+-+-++. ..+++.+|...|-+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 122233445 67888888887777
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.21 E-value=4.3 Score=39.30 Aligned_cols=68 Identities=9% Similarity=-0.112 Sum_probs=47.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCChhHH
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIR-----SGYERCVVVS 127 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~~ 127 (551)
.++..+...|++.+|+..+..+....+ -+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|.+.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566677777777777777776654 4666777777777777777777777776643 4777776553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.82 E-value=19 Score=40.48 Aligned_cols=67 Identities=3% Similarity=-0.202 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc-----hHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG-----DYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
...|.-++..+.+++.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+...+
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 345777788888999999999999999886543322 5777888999999999999988777665443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.70 E-value=11 Score=39.74 Aligned_cols=122 Identities=13% Similarity=0.027 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhc-----------CCCCHhH--
Q 048830 194 VCLLSSCAHVGA-LNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGN-LDSAFCVFSRM-----------RKRDVLS-- 258 (551)
Q Consensus 194 ~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~-----------~~~~~~~-- 258 (551)
..++..+.-.++ .+.|..+++.+.+.....+......++....+.++ --+|.++..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344555555555 46677777777765432233333344444433332 12233333222 2222211
Q ss_pred --------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHh
Q 048830 259 --------WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSHQGLVEEGVEYFHMM 317 (551)
Q Consensus 259 --------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~ 317 (551)
...-..-+...|+++-|+++-++.... .|+ -.||..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111123455678888888888888875 444 578888888888888888888888876
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.38 E-value=31 Score=31.90 Aligned_cols=167 Identities=9% Similarity=0.015 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCCHhhHHHHHHHHh
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISF----FKQMLMAGFHPDSITFLGLLCGCS 302 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 302 (551)
.|.++..=|.+.+++++|.+++.. -...+.++|+...|.++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555567788888888887554 23345667777666654 444455678888888777777665
Q ss_pred ccCCHH-HHHHHHHHhH---HhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhc---C
Q 048830 303 HQGLVE-EGVEYFHMMV---SRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIH---R 372 (551)
Q Consensus 303 ~~g~~~-~a~~~~~~~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~---g 372 (551)
....-+ .=.++.+.++ .+.|-.+ ++.....+...|.+.|++.+|+..|-. -.. ++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 1112222222 1112222 677788899999999999999987754 221 455555555444333 4
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK 419 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 419 (551)
...++....-+ ..--|...|+...|..+++...
T Consensus 183 ~~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 43333222211 2234556788889988887654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.29 E-value=5.9 Score=29.48 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+-+..+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4446667777777778899999999999999999999999999998876533 334557666653
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.86 E-value=23 Score=30.17 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCCC---CHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhhc--CCCcchHHHHHHHhhhcCChhHHHHHHH
Q 048830 344 EKALEVINTSSPS---DPVLWRTLLGSCKI--HRNVEIGEIAMKNLVQLE--AASAGDYVLLATIYACTKDEEGVARTRK 416 (551)
Q Consensus 344 ~~A~~~~~~~~~~---~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 416 (551)
+.+...|.. .+. |+......+..-.. .++...+..+|..+...+ -.-+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~-~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQD-METYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTT-CGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcc-cccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444544 333 55444443333222 455778889999988754 5567789999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEECCEEEEEEecCCCCCChHHHHHHHHHHHHHHHhcCccCC
Q 048830 417 LIKSNGIKTTPGWSWIEIGNQVHKFVVDDKSHPDADMIYRKLEEIMHRAKFIGYTKD 473 (551)
Q Consensus 417 ~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~ 473 (551)
.-.+++-.| .+.+.....+...+|...+++-+
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 888877766 34455666677778887777333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.85 E-value=14 Score=27.59 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048830 71 QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMR 132 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 132 (551)
+..+-++.+...... |++......++||-+.+++..|.++++-++... .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555566666677777 888888888888888888888888888776543 233445665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.47 E-value=4.5 Score=31.94 Aligned_cols=48 Identities=6% Similarity=-0.041 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHhhcCCC-cchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 373 NVEIGEIAMKNLVQLEAAS-AGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+..+++.+++.+++.+|.. ...+..|+-++.+.|++++|+++.+.+.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4456777777777766633 44556677777777777777777776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 551 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 41/377 (10%), Positives = 99/377 (26%), Gaps = 16/377 (4%)
Query: 41 AQLLFNQI--QNPQ-TQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLK 97
A+ Q+ Q P T L Q ++ + + + + ++ +
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Query: 98 ACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVS 157
H ++ + + + A
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Query: 158 WNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIAC 217
+ + + EA Y + L G + + I A
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196
Query: 218 EMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD---VLSWNSMIVGYGVHGRGDE 274
+ + L ++ + D A + R + ++ Y G D
Sbjct: 197 TL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255
Query: 275 AISFFKQML-MAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCL 333
AI +++ + + PD+ L +G V E + ++ + L
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANA--LKEKGSVAEAEDCYNTALRLCP--THADSLNNL 311
Query: 334 VDLYGRAGKLEKALEVINTS---SPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390
++ G +E+A+ + + P L + ++ + K +++
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371
Query: 391 SAGDYVLLATIYACTKD 407
A Y + +D
Sbjct: 372 FADAYSNMGNTLKEMQD 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.19 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.3 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.17 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.15 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.91 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.87 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.45 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.3 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.2 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.75 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.66 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.6 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.71 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.09 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.38 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.75 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.3e-22 Score=196.35 Aligned_cols=372 Identities=12% Similarity=0.050 Sum_probs=302.9
Q ss_pred HHHHHHcCCCCChHHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcc
Q 048830 26 LLNSYAISVSSSLSYAQLLFNQIQ---NPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERV 102 (551)
Q Consensus 26 li~~~~~~~~g~~~~A~~lf~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~ 102 (551)
+...+-+. |++++|.+.|+++. +.+..+|..+...|.+.|++++|+..|++..+..+ -+..++..+..++...
T Consensus 5 la~~~~~~--G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 5 LAHREYQA--GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhhh
Confidence 34556677 99999999998764 34678899999999999999999999999988874 3567888899999999
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccC---CCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 103 KALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNM---PERDLVSWNSIISCYTQASFHLEALKLYE 179 (551)
Q Consensus 103 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 179 (551)
|++++|...+....+.. +.+..........+...+....+....... .......+..........+....+...+.
T Consensus 81 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 99999999999998875 444444555555555555554444443332 23455566667777778888888888888
Q ss_pred HhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCH
Q 048830 180 RMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMR---KRDV 256 (551)
Q Consensus 180 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~ 256 (551)
...... +-+...+..+...+...|..++|...+...++.. +.+...+..+...|...|++++|...|++.. ..+.
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 237 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH
Confidence 776542 3345677777888889999999999999998865 3357788899999999999999999998765 3567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHH
Q 048830 257 LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDL 336 (551)
Q Consensus 257 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 336 (551)
..+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|...++..... .+.+...+..+...
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHH
Confidence 788889999999999999999999998853 234577888999999999999999999988753 34467788899999
Q ss_pred HhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCC
Q 048830 337 YGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKD 407 (551)
Q Consensus 337 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 407 (551)
+.+.|++++|.+.|++++.. +..+|..+..++...|++++|...++++++++|+++.+|..|+.+|.+.|+
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999987765 788999999999999999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.2e-21 Score=189.17 Aligned_cols=353 Identities=13% Similarity=0.036 Sum_probs=293.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 048830 59 LIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANG 138 (551)
Q Consensus 59 li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 138 (551)
+...+.+.|++++|++.|+++.+..+ -+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 34567788999999999999998764 356788888999999999999999999999875 556788999999999999
Q ss_pred CHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048830 139 VIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRI 215 (551)
Q Consensus 139 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 215 (551)
++++|...+....+ .+...+..........+....+........... .................+....+...+..
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 99999999988764 344555556666666677777766666555443 33344444555566677788888888877
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048830 216 ACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 216 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 292 (551)
..... +.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..+++..... +.+..
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 77764 33567888899999999999999999987653 467789999999999999999999999998864 44567
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSC 368 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 368 (551)
.+..+...+...|++++|...|+++.+ +.| +...+..+..+|...|++++|.+.++.++.. +...+..+...+
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 788888999999999999999999875 345 5778899999999999999999999874433 888999999999
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 369 KIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 369 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.2e-14 Score=135.52 Aligned_cols=239 Identities=14% Similarity=-0.025 Sum_probs=158.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 048830 160 SIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG 239 (551)
Q Consensus 160 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 239 (551)
.....+.+.|++++|+..|++..+.. +-+..++..+..++...|++++|...+..+++... -+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 34556667777777777777776542 22344566666666666666666666666666532 23455555666666666
Q ss_pred CHHHHHHHHHhcCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 048830 240 NLDSAFCVFSRMRKRDVL---SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHM 316 (551)
Q Consensus 240 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 316 (551)
++++|.+.+++....++. .+....... ...+.......+..+...+...+|...|..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666666665554321100 000000000 000000011112223344567778888887
Q ss_pred hHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc
Q 048830 317 MVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG 393 (551)
Q Consensus 317 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 393 (551)
..+...-.++..++..+...+...|++++|...|++++.. +..+|..+...+...|++++|...++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7654333345667788888999999999999998875433 8899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 394 DYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
++..++.+|...|++++|...|++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.1e-13 Score=131.81 Aligned_cols=263 Identities=11% Similarity=0.009 Sum_probs=192.7
Q ss_pred HHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCC
Q 048830 129 NLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGA 205 (551)
Q Consensus 129 ~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 205 (551)
.....|.+.|++++|+..|+++.+ .+..+|..+..+|...|++++|+..|.+..+.. +-+...+..+..++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 356678999999999999998764 356789999999999999999999999988743 2345677888889999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048830 206 LNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLM 284 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 284 (551)
+++|.+.+..+.+.. |+.... ........ ..+.......+..+...+...+|...|.+...
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988754 221110 00000000 00111111122233445667788888888776
Q ss_pred cC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHH
Q 048830 285 AG-FHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPV 359 (551)
Q Consensus 285 ~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 359 (551)
.. -.++...+..+...+...|++++|...|+..... .| +...|..+...|.+.|++++|.+.|++++.. +..
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 43 2345567778888889999999999999988753 34 5677888999999999999999999886543 888
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcch-----------HHHHHHHhhhcCChhHHHH
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGD-----------YVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~ 413 (551)
+|..++.+|...|++++|...|+++++++|+++.. +..+..++...|+.+.+..
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999887653 3456667777777665544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.2e-09 Score=104.11 Aligned_cols=258 Identities=12% Similarity=-0.012 Sum_probs=158.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCcccC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC----CC-chhHHHHHHH
Q 048830 163 SCYTQASFHLEALKLYERMRFEDVGLD----GFTLVCLLSSCAHVGALNMGIFLHRIACEMGF----VE-SVYVGNALVD 233 (551)
Q Consensus 163 ~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~-~~~~~~~li~ 233 (551)
..+...|++++|++++++..+.....+ ...+..+..++...|++++|...++.+.+... .+ ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334455555555555555544221111 12334444555555666666665555544210 01 1233445556
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHhhHHHHH
Q 048830 234 MYAKCGNLDSAFCVFSRMRK-------R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGF----HPDSITFLGLL 298 (551)
Q Consensus 234 ~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll 298 (551)
.|...|++..|...+..... + ....+..+...+...|+++.+...+........ .....++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 66677777766666655321 1 112445556677778888888888777765321 12223445555
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCC-----ccchhhhhHHHhhcCCHHHHHHHHhhcCCC-------CHHHHHHHHH
Q 048830 299 CGCSHQGLVEEGVEYFHMMVSRYNLKPG-----IKHYGCLVDLYGRAGKLEKALEVINTSSPS-------DPVLWRTLLG 366 (551)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~ 366 (551)
..+...+....+...+........-..+ ...+..+...+...|++++|...+++++.. ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6666777777777777666543221111 234555667778888999998888875544 3456667788
Q ss_pred HHHhcCcHHHHHHHHHHHHhh------cCCCcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 367 SCKIHRNVEIGEIAMKNLVQL------EAASAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 367 ~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
++...|++++|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999988753 244566888999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=1.4e-10 Score=110.49 Aligned_cols=230 Identities=7% Similarity=-0.119 Sum_probs=168.5
Q ss_pred HhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHH
Q 048830 166 TQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVG--ALNMGIFLHRIACEMGFVESVYVG-NALVDMYAKCGNLD 242 (551)
Q Consensus 166 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~ 242 (551)
...|++++|+.+++...+.. +-+...+..+..++...+ +.+++...+..+++.... +...+ ..+...+...|..+
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccH
Confidence 34455777888888876642 223445555555555554 477888888888886533 34443 45557788889999
Q ss_pred HHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048830 243 SAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS 319 (551)
Q Consensus 243 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 319 (551)
+|...++.+.+ .+..+|+.+...+...|++++|...+++.... .|+.. .+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999998875 36788999999999999988887666554442 22222 223334455666677777777764
Q ss_pred hcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 320 RYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 320 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
..+++...+..++..+...|+.++|.+.+.++++. +..+|..+..++...|+.++|...++++++++|.++..|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 33456777888999999999999999999997777 5677888889999999999999999999999999888888
Q ss_pred HHHHHhhh
Q 048830 397 LLATIYAC 404 (551)
Q Consensus 397 ~l~~~~~~ 404 (551)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88776654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=3.7e-09 Score=100.49 Aligned_cols=187 Identities=9% Similarity=-0.083 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC--CC--Hh
Q 048830 227 VGNALVDMYAKCGNLDSAFCVFSRMRK--------RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMA--GFH--PD--SI 292 (551)
Q Consensus 227 ~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~--p~--~~ 292 (551)
.+..+...|...|+++.+...+..... ....++..+...+...++..++...+.+.... ... +. ..
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 344455666666666666666655431 12234445555666677777777666655442 111 11 12
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--CccchhhhhHHHhhcCCHHHHHHHHhhcC------CC---CHHHH
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP--GIKHYGCLVDLYGRAGKLEKALEVINTSS------PS---DPVLW 361 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~---~~~~~ 361 (551)
.+..+...+...|+++.|...++...+...-.+ ....+..+...|...|++++|...+++++ .. ....+
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 344455566677777887777776643211111 12334456677777888888887777643 11 45567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcCC---------CcchHHHHHHHhhhcCChhHHHH
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAA---------SAGDYVLLATIYACTKDEEGVAR 413 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~ 413 (551)
..+...+...|++++|...+++++++.+. ....+..+...+...++.+++.+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 77778888888888888888888876432 11233344555566666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.3e-09 Score=99.15 Aligned_cols=221 Identities=11% Similarity=-0.058 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHhhhCCc-cc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048830 170 FHLEALKLYERMRFEDV-GL--DGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFC 246 (551)
Q Consensus 170 ~~~~A~~~~~~m~~~~~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 246 (551)
+.+.++.-+.+...... .+ ...++..+..+|.+.|++++|...|+..++.. +.+..+++.+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34455555566554321 11 12356666777888888888888888888864 3357788888999999999999999
Q ss_pred HHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048830 247 VFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNL 323 (551)
Q Consensus 247 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (551)
.|+++.+ .+..+|..+...|...|++++|+..|++..+.. +.+......+..++.+.+..+.+..+...... .
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---c
Confidence 9988763 356688888888999999999999999888753 22344433444445555555555555444432 2
Q ss_pred CCCccchhhhhHHHhhc----CCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 324 KPGIKHYGCLVDLYGRA----GKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 324 ~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
.+....+. ++..+... +..+.+...+...... ...+|..+...+...|++++|...|++++..+|++...|.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22222222 22232222 2233333322221111 4456777889999999999999999999999998765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.7e-09 Score=101.62 Aligned_cols=210 Identities=10% Similarity=0.077 Sum_probs=109.2
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHH
Q 048830 200 CAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCG-NLDSAFCVFSRMR---KRDVLSWNSMIVGYGVHGRGDEA 275 (551)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 275 (551)
+.+.+..++|.++++.+++.. +-+..+|+....++...| ++++|...++... ..+..+|+.+...+.+.|++++|
T Consensus 53 ~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eA 131 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 131 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHH
Confidence 333344444444444444432 122334444444444443 2455555554433 13445555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCC------HHHHHH
Q 048830 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGK------LEKALE 348 (551)
Q Consensus 276 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~ 348 (551)
+..++++.+.. +-+...|..+...+.+.|++++|...++.+++ +.| +...|+.+..++.+.+. +++|.+
T Consensus 132 l~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~ 207 (315)
T d2h6fa1 132 LEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 207 (315)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHH
Confidence 55555555532 22344555555555555555555555555543 233 33444444444433333 566666
Q ss_pred HHhhcCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc--hHHHHHHHhhhc--CChhHHHHHH
Q 048830 349 VINTSSP---SDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG--DYVLLATIYACT--KDEEGVARTR 415 (551)
Q Consensus 349 ~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~a~~~~ 415 (551)
.+.+++. .+...|..+...+...| .+++...++.+.++.|.... .+..++.+|... +..+.+...+
T Consensus 208 ~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~ 280 (315)
T d2h6fa1 208 YTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 280 (315)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6655443 37888888777665544 57788888888888876543 445566666543 3433444333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=8.2e-09 Score=96.62 Aligned_cols=184 Identities=8% Similarity=-0.024 Sum_probs=125.3
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-HhHHHHHHHHHHhcCChHHHHHHHH
Q 048830 205 ALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRK--R-D-VLSWNSMIVGYGVHGRGDEAISFFK 280 (551)
Q Consensus 205 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 280 (551)
..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4567777777777654455566777777788888888888888887643 2 2 3467777888888888888888888
Q ss_pred HHHHcCCCCCHhhHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---
Q 048830 281 QMLMAGFHPDSITFLGLLC-GCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS--- 356 (551)
Q Consensus 281 ~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 356 (551)
++.+.+ +.+...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|+.+|++++..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 877653 222333333322 233457778888888887764 2234566777777777888888888887775432
Q ss_pred ----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 357 ----DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 357 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
....|...+..-..+|+.+.+..+++++.+.-|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 34577777777777788888888777777776654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=9.1e-10 Score=103.53 Aligned_cols=192 Identities=7% Similarity=0.004 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048830 225 VYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHG-RGDEAISFFKQMLMAGFHPDSITFLGLLCG 300 (551)
Q Consensus 225 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 300 (551)
..+++.+...+.+.+..++|.++++++.+ .+..+|+....++...| ++++|+..+++..+.. +-+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 45677788889999999999999999864 46778999999988877 4899999999998863 2346788889999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCc---
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRN--- 373 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~--- 373 (551)
+...|++++|+..++.+.+ +.| +...|..+..++...|++++|++.+++++.. +...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 9999999999999999985 456 6889999999999999999999999986654 88889888777665544
Q ss_pred ---HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 374 ---VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 374 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+++|...+.++++++|.++..|..++.++...| .+++.+.++...+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 689999999999999999999999999887665 57788888777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=1.8e-08 Score=94.29 Aligned_cols=180 Identities=8% Similarity=0.032 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 048830 239 GNLDSAFCVFSRMRK----RDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 239 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+++.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 446788888887542 4667889999999999999999999999987532223456888999999999999999999
Q ss_pred HHhHHhcCCCCCccchhhhhHH-HhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC
Q 048830 315 HMMVSRYNLKPGIKHYGCLVDL-YGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA 390 (551)
Q Consensus 315 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 390 (551)
+.+.+. .+.+...|...... +...|+.+.|..+|++++.. ++..|...+..+...|+.+.|..+|+++++..|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998753 22244455544444 34468999999999986654 8999999999999999999999999999998876
Q ss_pred Ccc----hHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 391 SAG----DYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 391 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
++. .|...+..-...|+.+.+.++.+++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 554 677777777888999999999998865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=3.7e-09 Score=96.14 Aligned_cols=212 Identities=12% Similarity=-0.032 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 048830 206 LNMGIFLHRIACEMGF-VE--SVYVGNALVDMYAKCGNLDSAFCVFSRMRK---RDVLSWNSMIVGYGVHGRGDEAISFF 279 (551)
Q Consensus 206 ~~~a~~~~~~~~~~g~-~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 279 (551)
.+.+..-++++..... .+ ...++..+..+|.+.|++++|.+.|++..+ .++.+|+.+..+|...|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3444445555554322 11 245777889999999999999999998763 57889999999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhc--CCC
Q 048830 280 KQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTS--SPS 356 (551)
Q Consensus 280 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~ 356 (551)
+++.+.. +-+..++..+..++...|++++|...|+...+. .| +......+...+.+.+..+.+..+.... .+.
T Consensus 95 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999863 224567888899999999999999999999764 34 3433334444555555544444433321 222
Q ss_pred CHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCC
Q 048830 357 DPVLWRTLLGSCK----IHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNG 422 (551)
Q Consensus 357 ~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 422 (551)
+...++. +..+. ..+..+.+...+.......|..+.+|..++.+|...|++++|.+.+++.....
T Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222222 22222 22334455555555555667777789999999999999999999999987643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=3.2e-08 Score=93.65 Aligned_cols=257 Identities=11% Similarity=0.019 Sum_probs=170.7
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHhcCC--CC-ChhhHHHHHHH---H-------HcCCChhHHHHHHHHHHHcCCCCCCh
Q 048830 23 GEWLLNSYAISVSSSLSYAQLLFNQIQ--NP-QTQAWNSLIRA---F-------AQSLSPLQAIFYYNHMLMASLSRPDT 89 (551)
Q Consensus 23 ~~~li~~~~~~~~g~~~~A~~lf~~~~--~~-~~~~~~~li~~---~-------~~~g~~~~A~~l~~~m~~~~~~~pd~ 89 (551)
...++....+. +..++|..++++.. .| +...|+..-.. + ...|.+++|+.+++...+..+ -+.
T Consensus 32 ~~~~~~~~~~~--~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p--k~~ 107 (334)
T d1dcea1 32 TQAVFQKRQAG--ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSY 107 (334)
T ss_dssp HHHHHHHHHTT--CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHHHhcc--cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC--CcH
Confidence 34444444443 44588988888654 34 44456543322 2 223447789999999888764 355
Q ss_pred hhHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhCCCHHHHHHHhccCCC---CChhHHHHHHH
Q 048830 90 FTFTFTLKACERVK--ALNKCQELHGFVIRSGYERCVVVST-NLMRGYAANGVIEAARSVFDNMPE---RDLVSWNSIIS 163 (551)
Q Consensus 90 ~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 163 (551)
..|..+..++...+ +.+++...+..+++.. +++...+. .+...+...+..++|+..++...+ .+..+|+.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~ 186 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56666665655554 5788888999888874 44555544 445677788999999999988876 45678888888
Q ss_pred HHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 048830 164 CYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDS 243 (551)
Q Consensus 164 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 243 (551)
.+.+.|++++|...+....+. .|+. ......+...+..+++...+....... +++...+..++..+...|+.++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence 999999888876665544331 2222 223333455666667777777666654 3445556666777777888888
Q ss_pred HHHHHHhcCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 048830 244 AFCVFSRMRKRDV---LSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSI 292 (551)
Q Consensus 244 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 292 (551)
|...|.+..+.++ .+|..+...|...|+.++|++.|++..+. .|+..
T Consensus 261 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~ 310 (334)
T d1dcea1 261 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA 310 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccH
Confidence 8888888776544 55666777788888888888888888774 56543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=3e-08 Score=86.05 Aligned_cols=109 Identities=10% Similarity=-0.063 Sum_probs=68.6
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHH
Q 048830 289 PDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTL 364 (551)
Q Consensus 289 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 364 (551)
|+...+......+.+.|++++|+..|+.+++. .| +...|..+..+|.+.|++++|+..|++++.. +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 55666666666777777777777777766543 33 4556666666666666666666666665554 55666666
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 365 LGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 365 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
..++...|++++|...++++++++|++...+...+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 666666666666666666666666654444433333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=5.2e-08 Score=76.35 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=68.4
Q ss_pred hHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 334 VDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
...+.+.|++++|+..|++++.. ++..|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45566777777777777765433 777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 048830 411 VARTRKLIKSN 421 (551)
Q Consensus 411 a~~~~~~m~~~ 421 (551)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888877653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.2e-07 Score=74.11 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=86.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHR 372 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g 372 (551)
-...+...|++++|...|+..++. .| +...|..+..+|...|++++|+..+++++.. ++..|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345677788888888888888753 44 5677888888888888888888888875543 8899999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
++++|+..++++++++|+++..+..+.++.+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999988888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=1.9e-07 Score=86.18 Aligned_cols=188 Identities=9% Similarity=-0.017 Sum_probs=111.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCHhhHHH
Q 048830 231 LVDMYAKCGNLDSAFCVFSRMRK-----RD----VLSWNSMIVGYGVHGRGDEAISFFKQMLMA----GF-HPDSITFLG 296 (551)
Q Consensus 231 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ 296 (551)
...+|...|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+. |- .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 34556666666666666665532 11 245666777777777777777777765542 10 011234455
Q ss_pred HHHHH-hccCCHHHHHHHHHHhHHhcC---CCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---C-------HHHH
Q 048830 297 LLCGC-SHQGLVEEGVEYFHMMVSRYN---LKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---D-------PVLW 361 (551)
Q Consensus 297 ll~~~-~~~g~~~~a~~~~~~~~~~~~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~ 361 (551)
+...| ...|++++|...+++..+.+. ..+ -..++..+...|...|++++|.+.|++++.. + ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 55555 345788888888877654221 111 1345667778888888888888888763332 1 1234
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc-----hHHHHHHHhhh--cCChhHHHHHHHHH
Q 048830 362 RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG-----DYVLLATIYAC--TKDEEGVARTRKLI 418 (551)
Q Consensus 362 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 418 (551)
...+..+...|+.+.|...+++..+.+|..+. ....|+.++.. .+++++|...|+.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555667788999999999998888875332 33455556555 34577877777544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=4.4e-06 Score=71.35 Aligned_cols=140 Identities=9% Similarity=-0.029 Sum_probs=108.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHH
Q 048830 232 VDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGV 311 (551)
Q Consensus 232 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 311 (551)
...+...|+++.|.+.|.++..+++.+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5567888999999999999999999999999999999999999999999999864 334578888999999999999999
Q ss_pred HHHHHhHHhcCCCCCcc-chhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcC
Q 048830 312 EYFHMMVSRYNLKPGIK-HYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 312 ~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 389 (551)
..|++.... .+++.. .|..+... .+. ...++..+..++...|++++|...+++++++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~~~~~~~~~-----------------~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLIDYKILGLQ-----------------FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEEECGGGTBC-----------------CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchHHHHHhhhh-----------------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999988753 222221 11111100 011 234566777889999999999999999999988
Q ss_pred CC
Q 048830 390 AS 391 (551)
Q Consensus 390 ~~ 391 (551)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 74
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=9.8e-08 Score=82.68 Aligned_cols=95 Identities=8% Similarity=-0.033 Sum_probs=58.5
Q ss_pred CCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 048830 325 PGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATI 401 (551)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 401 (551)
|+...+...+..|.+.|++++|+..|++++.. ++..|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34444445556666666666666666554432 666666666666666666666666666666666666666666666
Q ss_pred hhhcCChhHHHHHHHHHH
Q 048830 402 YACTKDEEGVARTRKLIK 419 (551)
Q Consensus 402 ~~~~g~~~~a~~~~~~m~ 419 (551)
|...|++++|...++++.
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.53 E-value=8.4e-08 Score=74.41 Aligned_cols=89 Identities=11% Similarity=-0.002 Sum_probs=80.2
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcC
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTK 406 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 406 (551)
+-.+...+.+.|++++|...|++++.. ++..|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 344667788899999999998885544 89999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHH
Q 048830 407 DEEGVARTRKLI 418 (551)
Q Consensus 407 ~~~~a~~~~~~m 418 (551)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.5e-07 Score=77.76 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=77.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHH
Q 048830 301 CSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIG 377 (551)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a 377 (551)
+...|+++.|.+.|..+ .+|+..+|..+..+|...|++++|++.|++++.. ++..|..+..++...|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34455566665555433 1244455555666666666666666666554433 666777777777777777777
Q ss_pred HHHHHHHHhhcCCC----------------cchHHHHHHHhhhcCChhHHHHHHHHHHhCCC
Q 048830 378 EIAMKNLVQLEAAS----------------AGDYVLLATIYACTKDEEGVARTRKLIKSNGI 423 (551)
Q Consensus 378 ~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 423 (551)
...|+++++..|.+ ..++..++.+|.+.|++++|.+.++.......
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77777777654433 23567889999999999999999998876443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=2.9e-06 Score=77.97 Aligned_cols=197 Identities=10% Similarity=-0.038 Sum_probs=106.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhC----CcccC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-----CCchhHHH
Q 048830 160 SIISCYTQASFHLEALKLYERMRFE----DVGLD-GFTLVCLLSSCAHVGALNMGIFLHRIACEMGF-----VESVYVGN 229 (551)
Q Consensus 160 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~ 229 (551)
.....|...|++++|+..|.+..+. +-.++ ..+|..+..+|.+.|++++|...+....+.-. .....++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 3455666667777777776665432 11111 23566666667777777777777666554210 11133444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHhcCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----H-hh
Q 048830 230 ALVDMYAK-CGNLDSAFCVFSRMRK-----R----DVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-----S-IT 293 (551)
Q Consensus 230 ~li~~y~~-~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~t 293 (551)
.+...|.. .|++++|.+.|.+..+ . -..+|..+...|...|++++|+..|++......... . ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 55555533 4777777777765531 1 123466667777777777777777777666421111 1 11
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---c---cchhhhhHHHhh--cCCHHHHHHHHhhcCCCCHH
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG---I---KHYGCLVDLYGR--AGKLEKALEVINTSSPSDPV 359 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~---~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~ 359 (551)
+...+..+...|+++.|...++...+ +.|+ . .....++.++-. .+.+++|...|+++.+.|+.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence 23334455566777777777776643 3332 1 123344444433 34567777777763333543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3e-07 Score=76.34 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=90.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC
Q 048830 297 LLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHR 372 (551)
Q Consensus 297 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g 372 (551)
....|.+.|++++|...|+++++. .| +...|..+..+|...|++++|.+.|++++.. +..+|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345677788888888888888753 45 5777888888888888888888888875543 8889999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhh--hcCChhHHHHH
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYA--CTKDEEGVART 414 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 414 (551)
++++|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988887766543 33446666544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4.1e-07 Score=75.47 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=82.6
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChh
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 409 (551)
....|.+.|++++|+..|++++.. +...|..+...|...|++++|...++++++++|.++.+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 456788999999999999986644 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 048830 410 GVARTRKLIKSN 421 (551)
Q Consensus 410 ~a~~~~~~m~~~ 421 (551)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.5e-06 Score=72.86 Aligned_cols=133 Identities=11% Similarity=-0.006 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHH
Q 048830 258 SWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLY 337 (551)
Q Consensus 258 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 337 (551)
.+......+.+.|++++|+..|.+....- |.... ..+.-......+. ..+|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS------------FSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccc------------cchHHHhhhchhH--------HHHHHHHHHHH
Confidence 44555667778888888888888777631 11000 0000001111110 12466688889
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHH
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVA 412 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 412 (551)
.+.|++++|+..+++++.. ++..|..+..++...|++++|...|+++++++|+++.+...+..+....+...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876643 88999999999999999999999999999999999999999988887776655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.2e-06 Score=68.64 Aligned_cols=105 Identities=11% Similarity=-0.076 Sum_probs=81.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHHhhcCC---HHHHHHHHhhcCCC---C--HHHHHHHH
Q 048830 295 LGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLYGRAGK---LEKALEVINTSSPS---D--PVLWRTLL 365 (551)
Q Consensus 295 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~--~~~~~~ll 365 (551)
..+++.+...+++++|.+.|+..++ +.| ++.++..+..++.+.++ +++|+.++++++.. + ..+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3567777788888888888888875 344 56777888888876554 45688888887665 1 34678899
Q ss_pred HHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHh
Q 048830 366 GSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIY 402 (551)
Q Consensus 366 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 402 (551)
.+|...|++++|+..++++++++|++..+...+..+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999987766554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.30 E-value=8.5e-05 Score=66.61 Aligned_cols=225 Identities=15% Similarity=0.051 Sum_probs=125.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 048830 154 DLVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAH----VGALNMGIFLHRIACEMGFVESVYVGN 229 (551)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 229 (551)
|+..+..|...+.+.+++++|++.|++..+.| |...+..+...|.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34455566666666667777777766665544 22222223333322 223444444444443332
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh---
Q 048830 230 ALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGV----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCS--- 302 (551)
Q Consensus 230 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--- 302 (551)
+...+..+...+.. ..+.+.|...++...+.|..+. ...+...+.
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCC
Confidence 22333333333222 3455666666666655542211 111111111
Q ss_pred -ccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cC
Q 048830 303 -HQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----AGKLEKALEVINTSSPS-DPVLWRTLLGSCKI----HR 372 (551)
Q Consensus 303 -~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g 372 (551)
.......+...+...... .+...+..|...|.. ..+...+..+++.+... ++.....|...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 233455555555554331 344455555555553 45666677777664444 67777777666654 56
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh----cCChhHHHHHHHHHHhCCCc
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYAC----TKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 424 (551)
+.+.|...|+++.+.+ ++..+..|+.+|.. ..+.++|.++|++..+.|..
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8999999999988875 56788889998876 34788999999988776653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=0.0014 Score=59.99 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHh
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 338 (551)
|.-++-.|.+.|++++|..++- + -.|+..-....+..+.+..+.+...++.....+. .| ...+.|+....
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~i---~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~ 246 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITMM---N--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLS 246 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH---H--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHG
T ss_pred hHHHHHHHHhcCCHHHHHHHHH---H--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhc
Confidence 3344445555555555554432 1 1333333344455566666666655555554432 22 33445555555
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhH
Q 048830 339 RAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEG 410 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 410 (551)
..-+..+..+.+++ .+++......++..... ++...+..|..+|...++++.
T Consensus 247 ~~~d~~r~V~~~~k------------------~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 247 PRLDHTRAVNYFSK------------------VKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp GGCCHHHHHHHHHH------------------TTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCHHHHHHHHHh------------------cCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHH
Confidence 55555555555554 34444444444443322 234456666666666666544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.5e-06 Score=68.09 Aligned_cols=92 Identities=9% Similarity=-0.018 Sum_probs=78.5
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhhcCCC--cchHHHHHHH
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIH---RNVEIGEIAMKNLVQLEAAS--AGDYVLLATI 401 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 401 (551)
...+++.+...+++++|.+.|++++.. ++.++..+..++.+. ++.++|+.+++++++.+|.+ +.++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356788888999999999999986654 889999999998764 45667999999999988764 4478999999
Q ss_pred hhhcCChhHHHHHHHHHHhC
Q 048830 402 YACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 402 ~~~~g~~~~a~~~~~~m~~~ 421 (551)
|.+.|++++|.+.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999763
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=5e-06 Score=69.45 Aligned_cols=112 Identities=6% Similarity=-0.041 Sum_probs=83.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q 048830 292 ITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIH 371 (551)
Q Consensus 292 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 371 (551)
..+......+.+.|++++|...|...++.....+.... ........+ ...+|+.+..+|.+.
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~~------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQAL------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhchh------HHHHHHHHHHHHHhh
Confidence 34445566777888888888888887754322222110 000111111 234677888999999
Q ss_pred CcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 372 RNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 372 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=1.1e-05 Score=67.25 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=73.8
Q ss_pred chhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc
Q 048830 329 HYGCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 405 (551)
.|..+..+|.+.|++++|+..+++++.. +...|..+..++...|++++|...|+++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4566778889999999999998875543 8889999999999999999999999999999999999999888887777
Q ss_pred CChhH-HHHHHHHH
Q 048830 406 KDEEG-VARTRKLI 418 (551)
Q Consensus 406 g~~~~-a~~~~~~m 418 (551)
+...+ ..+++..|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 65543 34454444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.15 E-value=8.7e-06 Score=66.57 Aligned_cols=112 Identities=5% Similarity=-0.097 Sum_probs=80.8
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC
Q 048830 293 TFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHR 372 (551)
Q Consensus 293 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g 372 (551)
.+..-...+.+.|++++|...|..++......++. .. ....... .+....+|..+..+|.+.|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~---~~-----------~~~~~~~---~~~~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW---DD-----------QILLDKK---KNIEISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC---CC-----------HHHHHHH---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh---hh-----------HHHHHhh---hhHHHHHHhhHHHHHHHhc
Confidence 44555666777888888888888776532111110 00 0000000 0002457788899999999
Q ss_pred cHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 373 NVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
++++|+..++++++++|.+..+|..++.+|...|++++|...|+...+.
T Consensus 82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=5.7e-07 Score=89.64 Aligned_cols=99 Identities=11% Similarity=-0.031 Sum_probs=46.6
Q ss_pred CCCC-CccchhhhhHHHhhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHH
Q 048830 322 NLKP-GIKHYGCLVDLYGRAGKLEKALEVINTSSPS-DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLA 399 (551)
Q Consensus 322 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 399 (551)
++.| +...+..+...+.+.|+.++|...+++++.. ...++..+...+...|++++|...|+++++++|+++.+|..|+
T Consensus 114 ~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg 193 (497)
T d1ya0a1 114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA 193 (497)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 3444 3455566666666677777666655553332 2345555666677777777777777777777777777777777
Q ss_pred HHhhhcCChhHHHHHHHHHHh
Q 048830 400 TIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+|...|+..+|...+.+...
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777766665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=7e-06 Score=68.48 Aligned_cols=129 Identities=9% Similarity=0.010 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CccchhhhhHHH
Q 048830 259 WNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKP-GIKHYGCLVDLY 337 (551)
Q Consensus 259 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 337 (551)
+......+...|++++|+..|.++... ............. ..+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHHH
Confidence 444566677788888888888776541 0000000000000 01223 345677788889
Q ss_pred hhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChh
Q 048830 338 GRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEE 409 (551)
Q Consensus 338 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 409 (551)
.+.|++++|+..+++++.. ++..|..+..++...|++++|...|+++++++|+++.++..+..++.+.....
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765 88899999999999999999999999999999999988888877765544333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3.2e-06 Score=66.87 Aligned_cols=90 Identities=6% Similarity=-0.034 Sum_probs=75.0
Q ss_pred hhhhHHHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcc-------hHHHHHH
Q 048830 331 GCLVDLYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAG-------DYVLLAT 400 (551)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~ 400 (551)
..+...|.+.|++++|++.|++++.. +..+|..+..+|...|++++|+..++++++++|.++. +|..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 35677788888888888888775543 8889999999999999999999999999999988765 5556777
Q ss_pred HhhhcCChhHHHHHHHHHHh
Q 048830 401 IYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 401 ~~~~~g~~~~a~~~~~~m~~ 420 (551)
.+...+++++|...+++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 88888999999999987653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=0.0011 Score=59.04 Aligned_cols=226 Identities=13% Similarity=0.002 Sum_probs=127.6
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHhccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhCCcccCHHHHHHHH
Q 048830 123 CVVVSTNLMRGYAANGVIEAARSVFDNMPE-RDLVSWNSIISCYTQ----ASFHLEALKLYERMRFEDVGLDGFTLVCLL 197 (551)
Q Consensus 123 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 197 (551)
|+..+..|...+.+.+++++|++.|++..+ .+..++..|...|.. ..++..|...+......+. | .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhhccc
Confidence 456677788889999999999999998764 567777778877776 5688899999888776652 2 2223333
Q ss_pred HHHH----hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCHhHHHHHHHHHHh
Q 048830 198 SSCA----HVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAK----CGNLDSAFCVFSRMR-KRDVLSWNSMIVGYGV 268 (551)
Q Consensus 198 ~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 268 (551)
..+. ...+.+.|...++...+.|.. .....+...+.. ......+...+.... ..+...+..+...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 3332 245677888888888776632 222223333332 233455555555433 2455556555555543
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHH
Q 048830 269 ----HGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLE 344 (551)
Q Consensus 269 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 344 (551)
..+...+...++...+.| +......+...+.. ......+++
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~--------------------------------g~~~~~d~~ 199 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH--------------------------------GEGATKNFK 199 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--------------------------------TCSSCCCHH
T ss_pred CCCcccccccchhhhhcccccc---ccccccchhhhccc--------------------------------Ccccccchh
Confidence 233444444444444433 22222222222221 000133555
Q ss_pred HHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcC
Q 048830 345 KALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 345 ~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 389 (551)
+|..+|+++... ++..+..|...|.. ..|.++|...|+++.+.+.
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 555555554433 55555555555543 3356667777776666553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=1.8e-05 Score=64.60 Aligned_cols=127 Identities=10% Similarity=-0.100 Sum_probs=93.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhH
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVD 335 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 335 (551)
...+......+.+.|++.+|+..|.+....- |.... ..-......... ....+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEE-----------WDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhh-----------hhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 3467777888999999999999999988631 11100 000000000010 11235677888
Q ss_pred HHhhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 336 LYGRAGKLEKALEVINTSSPS---DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 336 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
+|.+.|++++|++.+++++.. +...|..+..++...|++++|...|+++++++|+++.+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999886644 88999999999999999999999999999999999888777665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=1.7e-05 Score=65.96 Aligned_cols=111 Identities=5% Similarity=-0.103 Sum_probs=80.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCc
Q 048830 294 FLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRN 373 (551)
Q Consensus 294 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 373 (551)
+......+...|++++|+..|.++++.. + .........+.. ..-|.+...|..+..++.+.|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~---~----------~~~~~~~~~~~~----~~~~~~~~~~~nla~~~~~~~~ 92 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV---E----------GSRAAAEDADGA----KLQPVALSCVLNIGACKLKMSD 92 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH---H----------HHHHHSCHHHHG----GGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh---h----------hhhhhhhhHHHH----HhChhhHHHHHHHHHHHHhhcc
Confidence 4445556667777777777777665320 0 000001111110 1001156678888999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 374 VEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 374 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
+++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.01 E-value=2.2e-05 Score=65.18 Aligned_cols=113 Identities=12% Similarity=-0.009 Sum_probs=82.0
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 048830 291 SITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKI 370 (551)
Q Consensus 291 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 370 (551)
...+......+.+.|++++|...|+..+......+.... ........+ ...+|..+..+|..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~------------~~~~~~~~~------~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE------------KESKASESF------LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH------------HHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch------------hhhhhcchh------HHHHHHhHHHHHHH
Confidence 344556666777777777777777776543221111100 000011111 23567778889999
Q ss_pred cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 371 HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 371 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
.|++++|+..++++++++|.++.+|..++.+|...|++++|...++++.+.
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.0029 Score=57.92 Aligned_cols=243 Identities=14% Similarity=0.072 Sum_probs=127.7
Q ss_pred CccHHHHHHHHHHcCCCCChHHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 048830 19 HEIHGEWLLNSYAISVSSSLSYAQLLFNQIQNPQTQAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKA 98 (551)
Q Consensus 19 ~~~~~~~li~~~~~~~~g~~~~A~~lf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~ 98 (551)
|..--....+.|-+. |.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+..+
T Consensus 13 n~~d~~~i~~~c~~~--~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~ 78 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDE--KMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFA 78 (336)
T ss_dssp ------------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHC--CCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHH
Confidence 333334455666677 88888888887654 3667778888888888887777643 345677777777
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHhccCC---CCChhHHHHHHHHHHhcCChHHHH
Q 048830 99 CERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEAARSVFDNMP---ERDLVSWNSIISCYTQASFHLEAL 175 (551)
Q Consensus 99 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 175 (551)
|.+......+. +.......++.....++..|-..|.+++...+++... ..+...++.++..|++.+ .++.+
T Consensus 79 l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 79 CVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHH
Confidence 77766554431 2222233455555677888888888888888887543 355666777888777764 34444
Q ss_pred HHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 048830 176 KLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRD 255 (551)
Q Consensus 176 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 255 (551)
+.+...-. . .....++..|-+.+.+ .-++..|.+.|++++|..+.-.-. ++
T Consensus 153 e~l~~~s~---~---y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~-~~ 203 (336)
T d1b89a_ 153 EHLELFWS---R---VNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHP-TD 203 (336)
T ss_dssp HHHHHHST---T---SCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHST-TT
T ss_pred HHHHhccc---c---CCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcc-hh
Confidence 44433211 1 1112233444333333 335555666667766665543322 12
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 048830 256 VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYF 314 (551)
Q Consensus 256 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 314 (551)
+.....++..+.+..+++...++.....+. .|+ ..+.++......-++.+..+.+
T Consensus 204 ~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 204 AWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHH
T ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHHHHHH
Confidence 222334455566666666555555444432 232 2344555444444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.91 E-value=2.8e-05 Score=59.56 Aligned_cols=89 Identities=6% Similarity=-0.121 Sum_probs=57.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 048830 58 SLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAAN 137 (551)
Q Consensus 58 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 137 (551)
.+...+.+.|++++|+..|++.....+ -+..+|..+..++.+.|++++|...+++.++.. +.+..++..|...|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccccc--ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 345556667777777777777766653 245566666666777777777777777766653 44566666666666666
Q ss_pred CCHHHHHHHhcc
Q 048830 138 GVIEAARSVFDN 149 (551)
Q Consensus 138 g~~~~A~~~~~~ 149 (551)
|++++|.+.|++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=3.7e-05 Score=64.36 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=83.4
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCH-HHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHH
Q 048830 298 LCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKL-EKALEVINTSSPSDPVLWRTLLGSCKIHRNVEI 376 (551)
Q Consensus 298 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 376 (551)
.......|++++|.+.|...+.-+.-.+-.. +....-. .++..+-.. ....+..+..++...|++++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCchH
Confidence 3456777888888888888764322111000 0000000 111111111 45577889999999999999
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHH-----hCCCccC
Q 048830 377 GEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIK-----SNGIKTT 426 (551)
Q Consensus 377 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~ 426 (551)
|...++++++.+|.+...|..++.+|...|++++|.+.|+++. +.|+.|.
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999874 3588763
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.65 E-value=1.3e-05 Score=64.74 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC----------CHHHHHHHHHHhHHhcCCCC-Cccchhhhh
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQG----------LVEEGVEYFHMMVSRYNLKP-GIKHYGCLV 334 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 334 (551)
|-+.+.+++|+..|+...+.. +-+...+..+..++...+ .+++|+..|+++++ +.| +...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 445566777777777776642 333455555555555332 23444444444432 233 233444444
Q ss_pred HHHhhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHH
Q 048830 335 DLYGRAGKLEKALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVART 414 (551)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 414 (551)
.+|...|++... .. ...++++.|...|+++++++|+++..+..|.... .|.++
T Consensus 83 ~~y~~~g~~~~~-----------~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~ 135 (145)
T d1zu2a1 83 NAYTSFAFLTPD-----------ET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQL 135 (145)
T ss_dssp HHHHHHHHHCCC-----------HH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHH
T ss_pred HHHHHcccchhh-----------HH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHH
Confidence 444332211000 00 0012467899999999999999987777666554 55566
Q ss_pred HHHHHhCCC
Q 048830 415 RKLIKSNGI 423 (551)
Q Consensus 415 ~~~m~~~g~ 423 (551)
+.+..+.|+
T Consensus 136 ~~e~~k~~~ 144 (145)
T d1zu2a1 136 HAEAYKQGL 144 (145)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHHHhc
Confidence 666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=3.9e-06 Score=83.44 Aligned_cols=109 Identities=11% Similarity=-0.054 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhc
Q 048830 226 YVGNALVDMYAKCGNLDSAFCVFSRMRKRD-VLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPD-SITFLGLLCGCSH 303 (551)
Q Consensus 226 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 303 (551)
..+..+...+.+.|+.++|...+.....++ ..++..+...+...|++++|+..|++..+. .|+ ...|+.|...+..
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASS 198 (497)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHH
Confidence 344444455555555555544443332221 123444455555555555555555555543 233 2455555555555
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHh
Q 048830 304 QGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYG 338 (551)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 338 (551)
.|+..+|...|.+.+. --+|....+..|..++.
T Consensus 199 ~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALS 231 (497)
T ss_dssp TTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHH
Confidence 5555555555555542 12233444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=4.6e-05 Score=56.28 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=49.0
Q ss_pred hhHHHhhcCCHHHHHHHHhhcCCC----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 048830 333 LVDLYGRAGKLEKALEVINTSSPS----------DPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLAT 400 (551)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 400 (551)
+...+.+.|++++|...|++++.. ...++..|..++.+.|++++|...++++++++|+++.++..+..
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 444444455555555444443211 35678889999999999999999999999999999988877644
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00025 Score=55.43 Aligned_cols=58 Identities=7% Similarity=-0.063 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhH
Q 048830 260 NSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMV 318 (551)
Q Consensus 260 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 318 (551)
..+...|.+.|++++|+..|.+..+.. +.+...+..+..+|.+.|++++|...++.++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 344555556666666666666665542 2234555555666666666666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=2.7e-05 Score=62.85 Aligned_cols=82 Identities=7% Similarity=-0.045 Sum_probs=56.2
Q ss_pred hcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhc
Q 048830 339 RAGKLEKALEVINTSSPS---DPVLWRTLLGSCKI----------HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACT 405 (551)
Q Consensus 339 ~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 405 (551)
+.+.+++|++.|++++.. ++.++..+..++.. .+.+++|+..++++++++|+++.+|..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 334444444444443222 44444444444432 24468899999999999999999999999999887
Q ss_pred CC-----------hhHHHHHHHHHHh
Q 048830 406 KD-----------EEGVARTRKLIKS 420 (551)
Q Consensus 406 g~-----------~~~a~~~~~~m~~ 420 (551)
|+ +++|.+.|++..+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc
Confidence 64 5778888887765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.45 E-value=0.00012 Score=59.66 Aligned_cols=63 Identities=6% Similarity=-0.144 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAA-----------SAGDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
...|+.+..+|...|++++|...+++++++.|. ...+|..++.+|...|++++|...|++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888876432 123678899999999999999999998765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.30 E-value=0.00029 Score=57.31 Aligned_cols=32 Identities=6% Similarity=-0.170 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Q 048830 360 LWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS 391 (551)
Q Consensus 360 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 391 (551)
.+..+..+|...|++++|...|++++++.|..
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 56677888999999999999999999886653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.00037 Score=62.06 Aligned_cols=125 Identities=12% Similarity=0.000 Sum_probs=77.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-ccchhhhhHHHhhcCCHHH
Q 048830 267 GVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPG-IKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 267 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 345 (551)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+ +.|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 35677777777777777752 33456677777777777888888777777764 3453 3344444444444444444
Q ss_pred HHHHHhh-cCCCCHHHH---HHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchH
Q 048830 346 ALEVINT-SSPSDPVLW---RTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDY 395 (551)
Q Consensus 346 A~~~~~~-~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 395 (551)
+..-... .+..++..| ......+...|+.++|...++++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 4332222 111123333 3334567778999999999999999888876544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=0.0014 Score=54.30 Aligned_cols=123 Identities=9% Similarity=0.034 Sum_probs=80.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHH
Q 048830 196 LLSSCAHVGALNMGIFLHRIACEMGFVESVYVGNALVDMYAKCGNLDSAFCVFSRMRKRDVLSWNSMIVGYGVHGRGDEA 275 (551)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 275 (551)
........|++++|.+.+...+..- +.... ......+-+...-..+.......+..+...+...|++++|
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 3456677888888888888887641 11000 0000000111111111222345677888889999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCCccc
Q 048830 276 ISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVS----RYNLKPGIKH 329 (551)
Q Consensus 276 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 329 (551)
+..++++.... +-+...+..++.++...|+.++|.+.|+++.+ ..|+.|+..+
T Consensus 87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999998863 44668888999999999999999999988744 3588887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0023 Score=46.64 Aligned_cols=64 Identities=9% Similarity=-0.139 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCC-------cchHHHHHHHhhhcCChhHHHHHHHHHHhC
Q 048830 358 PVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAAS-------AGDYVLLATIYACTKDEEGVARTRKLIKSN 421 (551)
Q Consensus 358 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 421 (551)
..-+-.+...+...|+++.|...+++++++.|.+ +.++..|+.+|.+.|++++|...++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3345577888999999999999999999986554 347889999999999999999999998763
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.75 E-value=0.0024 Score=56.57 Aligned_cols=118 Identities=10% Similarity=-0.128 Sum_probs=70.1
Q ss_pred HHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 048830 63 FAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLMRGYAANGVIEA 142 (551)
Q Consensus 63 ~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 142 (551)
..+.|++++|+..|++.++..+ -|...+..+...++..|++++|...++...+.. +.+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P--~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence 4567888888888888887775 466777888888888888888888888887763 2234444444444443333333
Q ss_pred HHHHhccC--C-CC-ChhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 048830 143 ARSVFDNM--P-ER-DLVSWNSIISCYTQASFHLEALKLYERMRF 183 (551)
Q Consensus 143 A~~~~~~m--~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 183 (551)
+..-.... . .| +...+......+...|+.++|.+++.+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 32222111 1 11 122233334455666777777777766544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.29 Score=46.40 Aligned_cols=55 Identities=7% Similarity=-0.070 Sum_probs=30.3
Q ss_pred HHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 048830 130 LMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALKLYERMRFED 185 (551)
Q Consensus 130 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 185 (551)
.+..+.+.++++.....+..-+ .+...-.....+....|+..+|...+...-..|
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3445566666666665554322 233333445556666677777766666554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.60 E-value=0.081 Score=39.28 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=101.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhhcCCHHH
Q 048830 266 YGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGRAGKLEK 345 (551)
Q Consensus 266 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 345 (551)
+.-.|..++..++..+.... .+..-|+-++.-....-+-+...+.++..-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 45568888888888888764 2555666666666666666777777777644433333 333333
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhhcCChhHHHHHHHHHHhCCCc
Q 048830 346 ALEVINTSSPSDPVLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYACTKDEEGVARTRKLIKSNGIK 424 (551)
Q Consensus 346 A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 424 (551)
...-+-. +..+....+..+....+.|.-+.-..+++.+++.+..+|.....++++|-+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~-~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVI-NNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHH-TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-hcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3333333 33355556667778888999999999999999988778999999999999999999999999999999875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.71 E-value=0.07 Score=41.01 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=54.0
Q ss_pred CCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhhh----cCChhHH
Q 048830 341 GKLEKALEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEAASAGDYVLLATIYAC----TKDEEGV 411 (551)
Q Consensus 341 g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a 411 (551)
.+.++|.++++++... ++.....|...|.. ..|.++|...|+++.+.+ ++.....|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 4556666666664444 55555555555543 456778888888877654 45667777777776 3578888
Q ss_pred HHHHHHHHhCCC
Q 048830 412 ARTRKLIKSNGI 423 (551)
Q Consensus 412 ~~~~~~m~~~g~ 423 (551)
.+++++..+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 888888777665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=1.4 Score=41.37 Aligned_cols=356 Identities=10% Similarity=-0.047 Sum_probs=179.7
Q ss_pred CChHHHHHHHhcCCC-CCh-hhHHHHHHHHHcCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 048830 36 SSLSYAQLLFNQIQN-PQT-QAWNSLIRAFAQSLSPLQAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHG 113 (551)
Q Consensus 36 g~~~~A~~lf~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~ 113 (551)
....+...+++.-+. |-. ..-...+..+.+.+++...+..+. ..+ ++...-.....+....|+.+.|.....
T Consensus 53 ~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~ 126 (450)
T d1qsaa1 53 QPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKP-GTTEAQCNYYYAKWNTGQSEEAWQGAK 126 (450)
T ss_dssp CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCC-SSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 345555555555432 100 111222445556666554443221 111 222223344455555566555555444
Q ss_pred HHHHhC-----------------CCCChhHHHHHHHHHHhCCCHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHH
Q 048830 114 FVIRSG-----------------YERCVVVSTNLMRGYAANGVIEAARSVFDNMPERDLVSWNSIISCYTQASFHLEALK 176 (551)
Q Consensus 114 ~~~~~g-----------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 176 (551)
.+-..| -..+...+-.-+......|+...|..+...++..........+..... +..+..
T Consensus 127 ~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~ 203 (450)
T d1qsaa1 127 ELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLT 203 (450)
T ss_dssp HHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHH
T ss_pred HHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHH
Confidence 333222 123333333445555666777777777777665444444555544332 233322
Q ss_pred HHHHhhhCCcccCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhc
Q 048830 177 LYERMRFEDVGLDGFTLVCLLSSCAH--VGALNMGIFLHRIACEMGFVESVYV---GNALVDMYAKCGNLDSAFCVFSRM 251 (551)
Q Consensus 177 ~~~~m~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~ 251 (551)
..... .++......+..++.+ ..+.+.+..++.............. ...+.......+..+.+...+...
T Consensus 204 ~~~~~-----~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~ 278 (450)
T d1qsaa1 204 FARTT-----GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (450)
T ss_dssp HHHHS-----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred HHhcC-----CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhh
Confidence 22211 1222222223333322 2466777777776665432222211 112222233455666676666544
Q ss_pred C--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccc
Q 048830 252 R--KRDVLSWNSMIVGYGVHGRGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKH 329 (551)
Q Consensus 252 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 329 (551)
. ..+.....-.+......+++..+...++.|... ......-.--+..++...|+.+.|..+|..+.. .++ -
T Consensus 279 ~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--f 351 (450)
T d1qsaa1 279 IMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--F 351 (450)
T ss_dssp HHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--H
T ss_pred cccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--h
Confidence 3 223333333444456678888888888876432 122233345567788888999999988888742 122 2
Q ss_pred hhhhhHHHhhcCCHHHHHHHHhhcCCC---CHHH---HHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHHHHHHHhh
Q 048830 330 YGCLVDLYGRAGKLEKALEVINTSSPS---DPVL---WRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYVLLATIYA 403 (551)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 403 (551)
|.-|...- .|..- .+-....+. .... -..-+..+...|....|...+..+.+. .++.....++....
T Consensus 352 YG~LAa~~--Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~ 424 (450)
T d1qsaa1 352 YPMVAAQR--IGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAF 424 (450)
T ss_dssp HHHHHHHH--TTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 33332111 11100 000000111 1111 112345577889999999998888753 34667888899999
Q ss_pred hcCChhHHHHHHHHHH
Q 048830 404 CTKDEEGVARTRKLIK 419 (551)
Q Consensus 404 ~~g~~~~a~~~~~~m~ 419 (551)
+.|.++.|+....+.+
T Consensus 425 ~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 425 NNQWWDLSVQATIAGK 440 (450)
T ss_dssp HTTCHHHHHHHHHHTT
T ss_pred HCCChhHHHHHHHHHH
Confidence 9999999988776654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.93 E-value=0.15 Score=39.06 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCccchhhhhHHHhh----cCCHHHH
Q 048830 271 RGDEAISFFKQMLMAGFHPDSITFLGLLCGCSHQGLVEEGVEYFHMMVSRYNLKPGIKHYGCLVDLYGR----AGKLEKA 346 (551)
Q Consensus 271 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 346 (551)
++++|+++|++..+.| +......|. .....+.++|..++++..+. | ++.....|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 5667777777777665 222222222 23445677777777777553 3 33444455555543 4567888
Q ss_pred HHHHhhcCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhhcC
Q 048830 347 LEVINTSSPS-DPVLWRTLLGSCKI----HRNVEIGEIAMKNLVQLEA 389 (551)
Q Consensus 347 ~~~~~~~~~~-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 389 (551)
.++|+++... ++.....|...|.. ..|.++|...++++.+++.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888886665 77777777766654 4688888888888887663
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.77 E-value=1.3 Score=32.68 Aligned_cols=67 Identities=13% Similarity=0.028 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 048830 155 LVSWNSIISCYTQASFHLEALKLYERMRFEDVGLDGFTLVCLLSSCAHVGALNMGIFLHRIACEMGFV 222 (551)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 222 (551)
....+.-++.+.++|+-+.-.++++.+.+. -+|++.....+..+|.+.|...++..++.++-+.|++
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344556677778888888888888886664 3677777888888888888888888888888887754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.38 E-value=0.3 Score=36.44 Aligned_cols=48 Identities=6% Similarity=-0.041 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHhhcCCCc-chHHHHHHHhhhcCChhHHHHHHHHHHh
Q 048830 373 NVEIGEIAMKNLVQLEAASA-GDYVLLATIYACTKDEEGVARTRKLIKS 420 (551)
Q Consensus 373 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 420 (551)
+.++|+.+++.+++.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44556666666665555443 3445566666666666666666665544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.80 E-value=0.64 Score=34.56 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcchHH
Q 048830 359 VLWRTLLGSCKIHRNVEIGEIAMKNLVQLEAASAGDYV 396 (551)
Q Consensus 359 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 396 (551)
..+..|.-+|.+.|++++|...++++++++|++..+..
T Consensus 74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 46667788888999999999999999999999875543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.75 E-value=6.9 Score=27.14 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048830 71 QAIFYYNHMLMASLSRPDTFTFTFTLKACERVKALNKCQELHGFVIRSGYERCVVVSTNLM 131 (551)
Q Consensus 71 ~A~~l~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 131 (551)
+...-++.+...... |++......++||-+.+++..|.++++-++... .++...|..++
T Consensus 24 e~rrgmN~l~~~DlV-PeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 555566667677777 888888888999999999999988888877543 33444565544
|