Psyllid ID: psy10004

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSDWLWELKECEEQRERSSYDQNSLRVSPYRLLTTVAMPAFDRRPRIIVSIQDV
cHHHHHccccHHHHHHHHHHcccccccEEEEEccccccEEEEccccccccccccccccccccccccccccccccEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEEccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccHHHHHHHHHHccccccccccEEEEEEEcccccccHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHccEEEcccccccEEcccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccccEEEEEEcc
ccHHHHcHHHHHHHHHHHHHccccccEEEEEEccccccEEEccccccccccccccccccccccEEEEEcccccEEEEEccccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEcccccccEEEccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHccccccccccccEEEEEEEEccccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHcccHHHccccccEEEEEEEEEccccccEEEEEcccccHHHHHHHHHHcccccccccEEEEEEEccccccccccEEEEccc
EEVLRVAKWSEALNDIFVsnyqadpslswqvfgsttgalrvfpahqwtdfldlfkpegrtdnmtdlydcrVREWyinaaaspKDMVILLDnsgsmmgqRREIARHVINNLLdtlgnndyVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILEnarndkktgadcnQAIMVVTDGASENYKEVFEEFNwrgqndstlwpVRVFSYLVgkevadyrdvkwmacankgyyVHLSTLAEVRDQILSYvpvmarplvlqrndhpivwtpiyadvtdpkLSDWLWELKECEEQrerssydqnslrvspyrllttvampafdrrprIIVSIQDV
EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDlfkpegrtdnMTDLYDCRVREWYInaaaspkdMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENarndkktgadCNQAIMVVTDGASENYKEVFEEFNwrgqndstlwpVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSDWLWELKECEeqrerssydqnslrvspYRLLTtvampafdrrpriivsiqdv
EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSDWLWELKECEEQRERSSYDQNSLRVSPYRLLTTVAMPAFDRRPRIIVSIQDV
***LRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSDWLWELKEC**************RVSPYRLLTTVAMPAFDRRPRIIV*****
EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNIL***************AIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSDWLWELKECE**************VSPYRLLTTVAMPAFDRRPRIIVSIQDV
EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSDWLWELKEC***********NSLRVSPYRLLTTVAMPAFDRRPRIIVSIQDV
EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFL*******RTDNMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSDWLWELKECEEQRERSSYDQNSLRVSPYRLLTTVAMPAFDRRPRIIVSIQ**
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EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSDWLWELKECEEQRERSSYDQNSLRVSPYRLLTTVAMPAFDRRPRIIVSIQDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query354 2.2.26 [Sep-21-2011]
Q5RJF7 1116 Voltage-dependent calcium yes N/A 0.847 0.268 0.416 5e-69
Q7Z3S7 1137 Voltage-dependent calcium yes N/A 0.847 0.263 0.416 5e-69
Q8IZS8 1091 Voltage-dependent calcium no N/A 0.838 0.272 0.395 1e-65
Q9Z1L5 1091 Voltage-dependent calcium no N/A 0.838 0.272 0.395 1e-65
Q8CFG5 1085 Voltage-dependent calcium no N/A 0.822 0.268 0.392 9e-64
P13806 1106 Voltage-dependent calcium no N/A 0.771 0.246 0.408 2e-52
Q6PHS9 1154 Voltage-dependent calcium no N/A 0.765 0.234 0.386 4e-52
Q8CFG6 1157 Voltage-dependent calcium no N/A 0.765 0.234 0.386 4e-52
P54289 1103 Voltage-dependent calcium no N/A 0.788 0.252 0.4 5e-52
Q9NY47 1150 Voltage-dependent calcium no N/A 0.765 0.235 0.383 6e-52
>sp|Q5RJF7|CA2D4_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-4 OS=Mus musculus GN=Cacna2d4 PE=2 SV=1 Back     alignment and function desciption
 Score =  261 bits (668), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 143/343 (41%), Positives = 203/343 (59%), Gaps = 43/343 (12%)

Query: 2   EVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTD 61
           ++L     SEALN +FV N+Q DP+L+WQ FGS+TG  R++P  +W        P+   +
Sbjct: 198 DILNGVYMSEALNPVFVENFQRDPTLTWQYFGSSTGFFRIYPGIKWM-------PD---E 247

Query: 62  NMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVN 121
           N    +DCR R WYI AA SPKD+VIL+D SGSM G R  IA+H I  +LDTLG ND+VN
Sbjct: 248 NGVIAFDCRNRGWYIQAATSPKDIVILVDISGSMKGLRMAIAKHTITTILDTLGENDFVN 307

Query: 122 VLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENA 181
           ++ +      + PCF  ILVQA+  N    K  V+ +     +   + AL  AF IL+  
Sbjct: 308 IIAYNDYVHYIEPCFKGILVQADRDNREHFKQLVDELM-VKGVGVVSQALIEAFEILKQF 366

Query: 182 RNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYR 241
           +  K+ G+ CNQAIM++TDGA E+Y+ VFE +NW  +       VRVF+YL+G+EV    
Sbjct: 367 QESKQ-GSLCNQAIMLITDGAVEDYEPVFETYNWPDRK------VRVFTYLIGREVTFAD 419

Query: 242 DVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKL 301
            +KW+AC NKGYY  +STLA+ ++ ++ Y+ V++RP+V+  +DH I+WT  Y D      
Sbjct: 420 RMKWIACNNKGYYTQISTLADAQESVMEYLHVLSRPMVIN-HDHDIIWTEAYMD------ 472

Query: 302 SDWLWELKECEEQRERSSYDQNSLRVSPYRLLTTVAMPAFDRR 344
                        R  +S  Q+ +      LLTTVAMP F ++
Sbjct: 473 ------------SRLFTSEAQSLM------LLTTVAMPVFSKK 497
The alpha-2/delta subunit of voltage-dependent calcium channels regulates calcium current density and activation/inactivation kinetics of the calcium channel.
Mus musculus (taxid: 10090)
>sp|Q7Z3S7|CA2D4_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-4 OS=Homo sapiens GN=CACNA2D4 PE=1 SV=2 Back     alignment and function description
>sp|Q8IZS8|CA2D3_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Homo sapiens GN=CACNA2D3 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z1L5|CA2D3_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Mus musculus GN=Cacna2d3 PE=1 SV=1 Back     alignment and function description
>sp|Q8CFG5|CA2D3_RAT Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Rattus norvegicus GN=Cacna2d3 PE=2 SV=1 Back     alignment and function description
>sp|P13806|CA2D1_RABIT Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Oryctolagus cuniculus GN=CACNA2D1 PE=1 SV=1 Back     alignment and function description
>sp|Q6PHS9|CA2D2_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Mus musculus GN=Cacna2d2 PE=1 SV=1 Back     alignment and function description
>sp|Q8CFG6|CA2D2_RAT Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Rattus norvegicus GN=Cacna2d2 PE=2 SV=1 Back     alignment and function description
>sp|P54289|CA2D1_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Homo sapiens GN=CACNA2D1 PE=1 SV=3 Back     alignment and function description
>sp|Q9NY47|CA2D2_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Homo sapiens GN=CACNA2D2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
328788303 1234 PREDICTED: voltage-dependent calcium cha 0.923 0.264 0.562 1e-116
380025835 1237 PREDICTED: voltage-dependent calcium cha 0.923 0.264 0.562 1e-116
340714427 1236 PREDICTED: LOW QUALITY PROTEIN: voltage- 0.923 0.264 0.562 1e-116
350399156 1236 PREDICTED: voltage-dependent calcium cha 0.923 0.264 0.562 1e-116
350399154 1225 PREDICTED: voltage-dependent calcium cha 0.923 0.266 0.562 1e-116
322788194 1955 hypothetical protein SINV_08974 [Solenop 0.923 0.167 0.560 1e-115
242013159 1180 conserved hypothetical protein [Pediculu 0.915 0.274 0.555 1e-115
383863951 1235 PREDICTED: voltage-dependent calcium cha 0.923 0.264 0.545 1e-115
328705397 1251 PREDICTED: voltage-dependent calcium cha 0.957 0.270 0.538 1e-114
307209671 1200 Voltage-dependent calcium channel subuni 0.923 0.272 0.551 1e-114
>gi|328788303|ref|XP_003251102.1| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like [Apis mellifera] Back     alignment and taxonomy information
 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/370 (56%), Positives = 263/370 (71%), Gaps = 43/370 (11%)

Query: 3   VLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDN 62
           V+R  KWSE L+  F++NY+ DPSLSWQ FGS TG +R +PA  W       +P      
Sbjct: 154 VIRAIKWSEELDKTFINNYEQDPSLSWQYFGSATGFMRQYPAMNW-----YMEP------ 202

Query: 63  MTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNV 122
             DL+DCR R WYI AA SPKD++IL+D SGSM G RREIARHV+NN+LDTLGNND+VN+
Sbjct: 203 -VDLFDCRTRSWYIEAATSPKDILILIDTSGSMTGIRREIARHVVNNILDTLGNNDFVNI 261

Query: 123 LQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENAR 182
           + F++V KEVVPCF D LVQANLANVRELK  +  + D   IANF++ALT AF +LE  R
Sbjct: 262 ITFSNVTKEVVPCFNDTLVQANLANVRELKRAILNL-DTEKIANFSLALTTAFELLETYR 320

Query: 183 NDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTL---WPVRVFSYLVGKEVAD 239
            +++ GA CNQAIM++TDG   NYKE+FE +NWR   D       PVR+F+YL+G+EVAD
Sbjct: 321 TERE-GARCNQAIMLITDGVPYNYKEIFETYNWRDNPDEPFKADMPVRMFTYLIGREVAD 379

Query: 240 YRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDP 299
            ++V+WMACAN+GY+VHL TLAEVR+++L YVPVMARPLVL R DHP +WTP+YADVTDP
Sbjct: 380 VKEVQWMACANRGYFVHLCTLAEVREEVLKYVPVMARPLVLGRTDHPTIWTPVYADVTDP 439

Query: 300 KLSDWLWELKECEEQRER-------------------------SSYDQNSLRVSPYRLLT 334
           K++DWLWE +E EEQ+ER                          S+DQ S  +  YRL+T
Sbjct: 440 KMTDWLWEQRESEEQKERFLNLHKRRKLLNSEERDRRFVKKQKKSHDQ-SGDLQEYRLMT 498

Query: 335 TVAMPAFDRR 344
           +V++P FDRR
Sbjct: 499 SVSIPVFDRR 508

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380025835|ref|XP_003696669.1| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like [Apis florea] Back     alignment and taxonomy information
>gi|340714427|ref|XP_003395730.1| PREDICTED: LOW QUALITY PROTEIN: voltage-dependent calcium channel subunit alpha-2/delta-3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350399156|ref|XP_003485435.1| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350399154|ref|XP_003485434.1| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|322788194|gb|EFZ13976.1| hypothetical protein SINV_08974 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|242013159|ref|XP_002427282.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511623|gb|EEB14544.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|383863951|ref|XP_003707443.1| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328705397|ref|XP_003242786.1| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307209671|gb|EFN86529.1| Voltage-dependent calcium channel subunit alpha-2/delta-3 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
FB|FBgn0261041 1218 stj "straightjacket" [Drosophi 0.841 0.244 0.560 9.6e-101
UNIPROTKB|Q7Z3S7 1137 CACNA2D4 "Voltage-dependent ca 0.776 0.241 0.448 3e-65
MGI|MGI:2442632 1116 Cacna2d4 "calcium channel, vol 0.776 0.246 0.445 3.3e-65
UNIPROTKB|Q8IZS8 1091 CACNA2D3 "Voltage-dependent ca 0.779 0.252 0.419 2.4e-61
MGI|MGI:1338890 1091 Cacna2d3 "calcium channel, vol 0.779 0.252 0.419 2.4e-61
RGD|631361 1085 Cacna2d3 "calcium channel, vol 0.762 0.248 0.415 1.7e-60
FB|FBgn0028863 1243 CG4587 [Drosophila melanogaste 0.779 0.222 0.393 4.4e-59
UNIPROTKB|P54289 1103 CACNA2D1 "Voltage-dependent ca 0.779 0.250 0.400 4.6e-50
UNIPROTKB|O77773 1091 CACNA2D1 "Voltage-dependent ca 0.779 0.252 0.400 5.7e-50
UNIPROTKB|E1BST6 1064 CACNA2D1 "Uncharacterized prot 0.779 0.259 0.393 2.3e-49
FB|FBgn0261041 stj "straightjacket" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 961 (343.3 bits), Expect = 9.6e-101, Sum P(2) = 9.6e-101
 Identities = 176/314 (56%), Positives = 232/314 (73%)

Query:     2 EVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTD 61
             +V++  +WSE L+ IF  NY+ DP+LSWQ FGS+TG +R FPA +W           R D
Sbjct:   196 DVIKAIQWSENLDQIFRDNYKNDPTLSWQFFGSSTGFMRQFPASKW-----------RKD 244

Query:    62 NMTDLYDCRVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVN 121
                DLYDCR+R WY+ AA SPKD+VIL+D SGSM+GQR +IA+HV+N +LDTLG ND+VN
Sbjct:   245 VPVDLYDCRLRSWYMEAATSPKDIVILMDGSGSMLGQRLDIAKHVVNTILDTLGTNDFVN 304

Query:   122 VLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENA 181
             +  F      VVPCF D L+QANL N+RELK G+E+     +IAN+T ALT+AF +LE  
Sbjct:   305 IFTFDKEVSPVVPCFEDTLIQANLGNIRELKEGIELFRP-KSIANYTAALTKAFELLEET 363

Query:   182 RNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYR 241
             +   + GA CNQAIM++ DGA EN +EVFE  NWR   D    PVRVF+YL+GKEVA++ 
Sbjct:   364 KLSSR-GAQCNQAIMIIGDGAPENNREVFELHNWR---DPPYKPVRVFTYLIGKEVANWD 419

Query:   242 DVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKL 301
             D++WMAC N+GYYVHLS  AEVR+ +L+Y+PVMARPLVL R+DHP++W+ +YAD+ D KL
Sbjct:   420 DIRWMACENQGYYVHLSDTAEVREMVLNYIPVMARPLVLGRHDHPVIWSQVYADIEDTKL 479

Query:   302 SDWLWELKECEEQR 315
             SD+LW++ +CE Q+
Sbjct:   480 SDYLWDINQCEYQK 493
GO:0005245 "voltage-gated calcium channel activity" evidence=ISS
GO:0005891 "voltage-gated calcium channel complex" evidence=ISS
GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IMP
GO:0007274 "neuromuscular synaptic transmission" evidence=IMP
GO:0045886 "negative regulation of synaptic growth at neuromuscular junction" evidence=IMP
GO:0045202 "synapse" evidence=IDA
GO:0007528 "neuromuscular junction development" evidence=IDA
GO:0048786 "presynaptic active zone" evidence=IDA
GO:0048488 "synaptic vesicle endocytosis" evidence=IMP
GO:0019233 "sensory perception of pain" evidence=IMP
UNIPROTKB|Q7Z3S7 CACNA2D4 "Voltage-dependent calcium channel subunit alpha-2/delta-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2442632 Cacna2d4 "calcium channel, voltage-dependent, alpha 2/delta subunit 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IZS8 CACNA2D3 "Voltage-dependent calcium channel subunit alpha-2/delta-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1338890 Cacna2d3 "calcium channel, voltage-dependent, alpha2/delta subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|631361 Cacna2d3 "calcium channel, voltage-dependent, alpha2/delta subunit 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0028863 CG4587 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P54289 CACNA2D1 "Voltage-dependent calcium channel subunit alpha-2/delta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O77773 CACNA2D1 "Voltage-dependent calcium channel alpha-2 delta subunit" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BST6 CACNA2D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
cd01463190 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium 6e-83
pfam08399123 pfam08399, VWA_N, VWA N-terminal 3e-18
smart00327175 smart00327, VWA, von Willebrand factor (vWF) type 3e-13
cd01461171 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_int 9e-13
cd00198161 cd00198, vWFA, Von Willebrand factor type A (vWA) 7e-12
pfam13519172 pfam13519, VWA_2, von Willebrand factor type A dom 7e-12
TIGR03788596 TIGR03788, marine_srt_targ, marine proteobacterial 6e-11
pfam00092178 pfam00092, VWA, von Willebrand factor type A domai 9e-08
pfam13768156 pfam13768, VWA_3, von Willebrand factor type A dom 2e-05
cd01450161 cd01450, vWFA_subfamily_ECM, Von Willebrand factor 1e-04
cd01475224 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilagin 4e-04
cd01462152 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebr 6e-04
cd01466155 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Wille 0.004
>gnl|CDD|238740 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information 
 Score =  250 bits (639), Expect = 6e-83
 Identities = 97/194 (50%), Positives = 137/194 (70%), Gaps = 6/194 (3%)

Query: 70  RVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVC 129
           R R WYI AA SPKD+VILLD SGSM GQR  +A+  ++++LDTL +ND+ N++ F++  
Sbjct: 1   RNRSWYIQAATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEV 60

Query: 130 KEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNIL--ENARNDKKT 187
             VVPCF D LVQA  +N + LK  ++M+ +A  IAN+T AL  AF++L      N   +
Sbjct: 61  NPVVPCFNDTLVQATTSNKKVLKEALDML-EAKGIANYTKALEFAFSLLLKNLQSNHSGS 119

Query: 188 GADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMA 247
            + CNQAIM++TDG  ENYKE+F+++NW     ++  PVRVF+YL+G+EV D R+++WMA
Sbjct: 120 RSQCNQAIMLITDGVPENYKEIFDKYNWD---KNSEIPVRVFTYLIGREVTDRREIQWMA 176

Query: 248 CANKGYYVHLSTLA 261
           C NKGYY H+ +L 
Sbjct: 177 CENKGYYSHIQSLD 190

The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex. Length = 190
>gnl|CDD|219821 pfam08399, VWA_N, VWA N-terminal Back     alignment and domain information
>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain Back     alignment and domain information
>gnl|CDD|238738 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|222192 pfam13519, VWA_2, von Willebrand factor type A domain Back     alignment and domain information
>gnl|CDD|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein Back     alignment and domain information
>gnl|CDD|215711 pfam00092, VWA, von Willebrand factor type A domain Back     alignment and domain information
>gnl|CDD|222367 pfam13768, VWA_3, von Willebrand factor type A domain Back     alignment and domain information
>gnl|CDD|238727 cd01450, vWFA_subfamily_ECM, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>gnl|CDD|238739 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>gnl|CDD|238743 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 354
KOG2353|consensus 1104 100.0
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 100.0
PF13768155 VWA_3: von Willebrand factor type A domain 99.94
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 99.94
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 99.93
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 99.92
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 99.9
cd01470198 vWA_complement_factors Complement factors B and C2 99.9
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 99.88
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 99.86
PRK13685326 hypothetical protein; Provisional 99.86
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 99.85
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 99.85
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 99.84
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 99.83
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 99.83
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 99.83
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 99.83
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 99.82
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 99.82
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 99.81
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 99.81
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 99.8
PF08399123 VWA_N: VWA N-terminal; InterPro: IPR013608 This do 99.8
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 99.8
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 99.8
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 99.79
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 99.77
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 99.76
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 99.75
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 99.75
PF00092178 VWA: von Willebrand factor type A domain; InterPro 99.74
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 99.74
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 99.72
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 99.71
PRK13406584 bchD magnesium chelatase subunit D; Provisional 99.71
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 99.7
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 99.7
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 99.67
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 99.64
COG4245207 TerY Uncharacterized protein encoded in toxicity p 99.63
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 99.6
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 99.57
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 99.51
PF10138200 vWA-TerF-like: vWA found in TerF C terminus ; Inte 99.37
COG2425437 Uncharacterized protein containing a von Willebran 99.36
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 99.35
PRK10997487 yieM hypothetical protein; Provisional 99.23
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 99.15
PF11775219 CobT_C: Cobalamin biosynthesis protein CobT VWA do 99.08
TIGR01651600 CobT cobaltochelatase, CobT subunit. This model de 98.93
COG4867652 Uncharacterized protein with a von Willebrand fact 98.7
PF05762222 VWA_CoxE: VWA domain containing CoxE-like protein; 98.69
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 98.64
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 98.64
KOG3768|consensus 888 98.55
PRK05325401 hypothetical protein; Provisional 98.52
cd01459254 vWA_copine_like VWA Copine: Copines are phospholip 98.5
COG4548637 NorD Nitric oxide reductase activation protein [In 98.48
TIGR02877371 spore_yhbH sporulation protein YhbH. This protein 98.42
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 98.39
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 98.38
PF04285421 DUF444: Protein of unknown function (DUF444); Inte 98.38
KOG2807|consensus378 98.36
COG2304 399 Uncharacterized protein containing a von Willebran 98.33
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 98.32
COG4547620 CobT Cobalamin biosynthesis protein CobT (nicotina 98.19
PF06707205 DUF1194: Protein of unknown function (DUF1194); In 98.03
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 98.02
PF11443534 DUF2828: Domain of unknown function (DUF2828); Int 97.97
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 97.92
COG2718423 Uncharacterized conserved protein [Function unknow 97.86
PLN00162 761 transport protein sec23; Provisional 97.82
PF07002146 Copine: Copine; InterPro: IPR010734 This represent 97.81
TIGR00627279 tfb4 transcription factor tfb4. This family is bas 97.73
smart00187423 INB Integrin beta subunits (N-terminal portion of 97.72
KOG1327|consensus529 97.61
KOG2884|consensus259 97.49
KOG1985|consensus 887 97.26
PF03850276 Tfb4: Transcription factor Tfb4; InterPro: IPR0046 97.1
PTZ00395 1560 Sec24-related protein; Provisional 97.08
PF11265226 Med25_VWA: Mediator complex subunit 25 von Willebr 97.04
COG5148243 RPN10 26S proteasome regulatory complex, subunit R 97.02
COG5151421 SSL1 RNA polymerase II transcription initiation/nu 96.97
COG3864396 Uncharacterized protein conserved in bacteria [Fun 96.84
TIGR00578 584 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit 96.8
COG3552395 CoxE Protein containing von Willebrand factor type 96.63
PF00362426 Integrin_beta: Integrin, beta chain; InterPro: IPR 96.19
KOG1984|consensus 1007 95.64
KOG4465|consensus598 95.58
COG1721416 Uncharacterized conserved protein (some members co 95.57
COG5242296 TFB4 RNA polymerase II transcription initiation/nu 95.5
COG5028 861 Vesicle coat complex COPII, subunit SEC24/subunit 94.75
KOG2487|consensus314 93.98
KOG1226|consensus 783 92.07
KOG1986|consensus 745 92.07
COG52714600 MDN1 AAA ATPase containing von Willebrand factor t 91.24
PF0274381 Cache_1: Cache domain; InterPro: IPR004010 Cache i 91.22
PRK15426570 putative diguanylate cyclase YedQ; Provisional 84.23
KOG2326|consensus 669 82.79
>KOG2353|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.6e-62  Score=509.69  Aligned_cols=298  Identities=51%  Similarity=0.947  Sum_probs=281.3

Q ss_pred             ChhhhhhcchHHHHHHHHHhhcCCCCceeEEeeCCCCceeecCCCCcccccccCCCCCCCCCccccccccccceeeeccC
Q psy10004          1 EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAA   80 (354)
Q Consensus         1 ~~v~~~i~ws~~ld~~f~~n~~~~p~l~wqyfgs~~G~~r~yP~~~~~~~~~~~~~~~~~~~~~~~yd~r~r~wy~~a~~   80 (354)
                      |+|+++|+||++||.||++|+++||+|.||||||++|++|+||+..|.+       + ...+.+++||||.|+||+++++
T Consensus       152 ~~vl~~~~WS~~ld~vf~~N~~~dP~l~wQ~Fgs~tG~~R~yPa~~W~~-------~-~~~~~idl~D~R~r~Wyi~aAt  223 (1104)
T KOG2353|consen  152 PDVLNAIDWSEHLDFVFRDNRESDPTLSWQYFGSATGLLRYYPAAAWFD-------N-NTDNSIDLYDCRNRSWYIQAAT  223 (1104)
T ss_pred             HHHHhhcccccchhHHHhhccccCchhhHHHhhhhhhhhhhCCCccCcc-------C-CCCCcceeeecccccccccccC
Confidence            6899999999999999999999999999999999999999999999986       2 2346799999999999999999


Q ss_pred             CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcCCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhhhcC
Q psy10004         81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGD  160 (354)
Q Consensus        81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l~~  160 (354)
                      +||||+||+|.||||.|.++.++|..+..+|++|+++|+|++++|++.+..++||+.+.+++|+..|++.++++++.+ .
T Consensus       224 ~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~l-~  302 (1104)
T KOG2353|consen  224 SPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIETL-D  302 (1104)
T ss_pred             CccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHhhh-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 7


Q ss_pred             CCCCCcHHHHHHHHHHHHHhccccCC--CCCCCcceEEEeccCCCCchHHHHHHhhhcccCCCCCCCeEEEEEEeCCCCC
Q psy10004        161 ANNIANFTVALTRAFNILENARNDKK--TGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVA  238 (354)
Q Consensus       161 ~~G~T~~~~aL~~A~~~l~~~~~~~~--~~~~~~~~IillTDG~~~~~~~i~~~~~~~~~~~~~~~~v~IftigiG~~~~  238 (354)
                      +.|.+++..||+.||++|.+.+.++.  .++.|+++||++|||.+++..++++.++|      +.+.||||||.+|.++.
T Consensus       303 ~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~------~~~~Vrvftflig~~~~  376 (1104)
T KOG2353|consen  303 AKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNW------PDKKVRVFTFLIGDEVY  376 (1104)
T ss_pred             cccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhcc------CCCceEEEEEEeccccc
Confidence            99999999999999999997766551  23459999999999999999999999997      45799999999999988


Q ss_pred             CHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHhccchhcc-CCCCCCccCCcccccCCCCcchhHHHHHHHHHhhhh
Q psy10004        239 DYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVLQ-RNDHPIVWTPIYADVTDPKLSDWLWELKECEEQRER  317 (354)
Q Consensus       239 ~~~~L~~iA~~~~G~~~~i~~~~~~~~~l~~~~~~l~~pl~~~-~~~~~~~w~~~y~d~~~~~~~~~~~~~~~~~~~~~~  317 (354)
                      +...++||||.++|+|++|.+.+++.+..++|+++++||++++ .+.+|++||.+|.|.                     
T Consensus       377 ~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~vl~~~~~~pv~wt~vy~~~---------------------  435 (1104)
T KOG2353|consen  377 DLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLVLQGEEAHPVTWTQVYTDL---------------------  435 (1104)
T ss_pred             ccccchhhhhhCCCceEeccchhhcChHhhhhhhhhccceeecccccCCceeeehhhhh---------------------
Confidence            8899999999999999999999999999999999999999998 788999999999998                     


Q ss_pred             cccccccccCCCCceEEEEeeeeeecC
Q psy10004        318 SSYDQNSLRVSPYRLLTTVAMPAFDRR  344 (354)
Q Consensus       318 ~~~~~~~~~~~~~~l~~tv~~pv~~~~  344 (354)
                                .+++++++|+.|||++.
T Consensus       436 ----------~~~~~i~~~~~pv~~~~  452 (1104)
T KOG2353|consen  436 ----------LYLGLIVTVSLPVFNRT  452 (1104)
T ss_pred             ----------ccCcceEecccCcccch
Confidence                      36788999999999985

>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>PF08399 VWA_N: VWA N-terminal; InterPro: IPR013608 This domain is found at the N terminus of proteins containing von Willebrand factor type A (VWA, IPR002035 from INTERPRO) and Cache (IPR004010 from INTERPRO) domains Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain Back     alignment and domain information
>TIGR01651 CobT cobaltochelatase, CobT subunit Back     alignment and domain information
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>KOG3768|consensus Back     alignment and domain information
>PRK05325 hypothetical protein; Provisional Back     alignment and domain information
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium Back     alignment and domain information
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02877 spore_yhbH sporulation protein YhbH Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56 Back     alignment and domain information
>KOG2807|consensus Back     alignment and domain information
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>COG2718 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines Back     alignment and domain information
>TIGR00627 tfb4 transcription factor tfb4 Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information
>KOG1327|consensus Back     alignment and domain information
>KOG2884|consensus Back     alignment and domain information
>KOG1985|consensus Back     alignment and domain information
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells Back     alignment and domain information
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) Back     alignment and domain information
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] Back     alignment and domain information
>KOG1984|consensus Back     alignment and domain information
>KOG4465|consensus Back     alignment and domain information
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only] Back     alignment and domain information
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2487|consensus Back     alignment and domain information
>KOG1226|consensus Back     alignment and domain information
>KOG1986|consensus Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors Back     alignment and domain information
>PRK15426 putative diguanylate cyclase YedQ; Provisional Back     alignment and domain information
>KOG2326|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
4fx5_A 464 VON willebrand factor type A; structural genomics, 1e-19
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 3e-08
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 4e-07
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 1e-06
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 1e-05
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 2e-05
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 2e-05
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 3e-05
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 3e-04
3ibs_A218 Conserved hypothetical protein BATB; structural ge 4e-04
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Length = 464 Back     alignment and structure
 Score = 88.5 bits (219), Expect = 1e-19
 Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 24/208 (11%)

Query: 78  AAASPKDMVILLDNSGSM--MGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPC 135
           A+ S    VI++D SGSM     +   A+      +DTL +  +  V+  T   + V P 
Sbjct: 73  ASGSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPT 132

Query: 136 FADILVQANLANVRELKMGVEMI--GDANNIANFTVALTRAFNILENARNDKKTGADCNQ 193
               L++A+  +    K  V  +       +      L +A  I + A +  K       
Sbjct: 133 -GGQLLRADYQSRAAAKEAVGRLHANGGTAMGR---WLAQAGRIFDTAPSAIK------- 181

Query: 194 AIMVVTDGASEN--YKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANK 251
             +++TDG  E+    ++         N             +G++  + ++++ +A A  
Sbjct: 182 HAILLTDGKDESETPADLARAIQSSIGN------FTADCRGIGEDW-EPKELRKIADALL 234

Query: 252 GYYVHLSTLAEVRDQILSYVPVMARPLV 279
           G    +   A + +             V
Sbjct: 235 GTVGIIRDPATLAEDFREMTAKSMGKEV 262
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Length = 189 Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Length = 223 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Length = 182 Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Length = 198 Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Length = 179 Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Length = 199 Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} Length = 185 Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Length = 194 Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Length = 218 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Length = 189 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
4fx5_A 464 VON willebrand factor type A; structural genomics, 99.92
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 99.91
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 99.9
3ibs_A218 Conserved hypothetical protein BATB; structural ge 99.89
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 99.89
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 99.88
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 99.88
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 99.88
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 99.87
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 99.87
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 99.86
2b2x_A223 Integrin alpha-1; computational design, antibody-a 99.86
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 99.86
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 99.86
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 99.86
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 99.85
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 99.84
3hrz_D 741 Complement factor B; serine protease, glycosilated 99.84
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 99.83
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 99.83
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 99.81
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 99.7
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 99.69
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 99.68
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 99.57
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 99.32
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 99.26
3rag_A242 Uncharacterized protein; structural genomics, PSI- 99.15
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 99.06
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 98.99
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limb 98.4
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 98.35
3fcs_B 690 Integrin beta-3; beta propeller, rossmann fold, EG 98.32
3rag_A242 Uncharacterized protein; structural genomics, PSI- 98.27
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 98.02
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 98.01
3t3p_B472 Integrin beta-3; integrin, cell adhesion, blood cl 97.98
3k6s_B 687 Integrin beta-2; cell receptor, adhesion molecule, 97.81
3v4v_B503 Integrin beta-7; cell adhesion, madcam-1, membrane 97.77
3vi3_B454 Integrin beta-1; beta propeller fold, rossman fold 97.72
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 97.66
3eh1_A 751 Protein transport protein SEC24B; copii coat prote 97.65
3efo_B 770 SEC24 related gene family, member D; copii, coat p 97.58
3eh2_A 766 Protein transport protein SEC24C; copii-coat prote 97.52
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
Probab=99.92  E-value=2.4e-24  Score=212.78  Aligned_cols=185  Identities=19%  Similarity=0.191  Sum_probs=159.3

Q ss_pred             CCCceEEEEEeCCCCCC--cchHHHHHHHHHHHHHHcCCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004         80 ASPKDMVILLDNSGSMM--GQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM  157 (354)
Q Consensus        80 ~~p~dvvillD~SgSM~--g~~~~~ak~a~~~ll~~L~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~  157 (354)
                      ..|.+++||||+||||.  +.+++.+|+++..+++.|.++|+|+|+.|++.+..++|+ ...+.+.+..++..++.+|+.
T Consensus        75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~-t~~l~~~~~~~~~~l~~~I~~  153 (464)
T 4fx5_A           75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPT-GGQLLRADYQSRAAAKEAVGR  153 (464)
T ss_dssp             -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESS-SSSCEECSHHHHHHHHHHHHT
T ss_pred             CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecC-CcccccCCHHHHHHHHHHHHc
Confidence            35799999999999999  999999999999999999999999999999999887763 224677788999999999999


Q ss_pred             hcCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCch--HHHHHHhhhcccCCCCCCCeEEEEEEeCC
Q psy10004        158 IGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENY--KEVFEEFNWRGQNDSTLWPVRVFSYLVGK  235 (354)
Q Consensus       158 l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~--~~i~~~~~~~~~~~~~~~~v~IftigiG~  235 (354)
                      + .+.|+|++..||..|+++|...       ++..+.|||||||.+++.  ..+...++. .     ..+++||+||+|.
T Consensus       154 L-~~~GgT~l~~aL~~A~~~l~~~-------~~~~~~IILLTDG~~~~~~~~~l~~~~~a-~-----~~~i~i~tiGiG~  219 (464)
T 4fx5_A          154 L-HANGGTAMGRWLAQAGRIFDTA-------PSAIKHAILLTDGKDESETPADLARAIQS-S-----IGNFTADCRGIGE  219 (464)
T ss_dssp             C-CCCSCCCHHHHHHHHHHHHTTC-------TTSEEEEEEEESSCCTTSCHHHHHHHHHH-H-----TTTCEEEEEEESS
T ss_pred             C-CCCCCCcHHHHHHHHHHHHhcC-------CCCCCEEEEEcCCCCCCCChHHHHHHHHH-h-----cCCCeEEEEEeCC
Confidence            9 9999999999999999999752       245689999999998742  333333321 1     2479999999998


Q ss_pred             CCCCHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHhccchhc
Q psy10004        236 EVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVL  280 (354)
Q Consensus       236 ~~~~~~~L~~iA~~~~G~~~~i~~~~~~~~~l~~~~~~l~~pl~~  280 (354)
                      +. +...|+.||+.++|.|+++.+.+++...+.+++..+..+.+.
T Consensus       220 ~~-d~~~L~~IA~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~  263 (464)
T 4fx5_A          220 DW-EPKELRKIADALLGTVGIIRDPATLAEDFREMTAKSMGKEVA  263 (464)
T ss_dssp             SS-CHHHHHHHHHHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEE
T ss_pred             cc-CHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhhchhee
Confidence            87 899999999999999999999999999999999999888655
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Back     alignment and structure
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 354
d1q0pa_209 c.62.1.1 (A:) Complement factor B domain {Human (H 9e-11
d1shux_181 c.62.1.1 (X:) Capillary morphogenesis protein 2 do 7e-08
d1mjna_179 c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte funct 1e-07
d1n3ya_189 c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo 3e-07
d1atza_184 c.62.1.1 (A:) von Willebrand factor A3 domain, vWA 3e-07
d1ijba_202 c.62.1.1 (A:) von Willebrand factor A1 domain, vWA 2e-06
d1mf7a_194 c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, M 2e-06
d1pt6a_192 c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo s 5e-05
d1jeyb2236 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain 3e-04
d1jeya2220 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain 0.002
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 9e-11
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 21/204 (10%)

Query: 84  DMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADIL 140
           ++ ++LD S S+       A+  + NL++ +   G      ++ + +  K  V       
Sbjct: 3   NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADS 62

Query: 141 VQAN--LANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGA-DCNQAIMV 197
             A+     + E+      +    N      AL   ++++    +    G       I++
Sbjct: 63  SNADWVTKQLNEINYEDHKLKSGTNTKK---ALQAVYSMMSWPDDVPPEGWNRTRHVIIL 119

Query: 198 VTDGAS------ENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEV-ADYRDVKWMA--C 248
           +TDG            +   +  + G++        +  Y+ G     +  ++  +A   
Sbjct: 120 MTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKK 179

Query: 249 ANKGYYVHL---STLAEVRDQILS 269
            N+ +   +     L +V  Q++ 
Sbjct: 180 DNEQHVFKVKDMENLEDVFYQMID 203
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 179 Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 202 Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 194 Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 220 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 99.86
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 99.85
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 99.85
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 99.81
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 99.8
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 99.79
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 99.77
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 99.75
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 99.74
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 99.54
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 99.52
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 99.42
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 99.21
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 98.44
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 98.43
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.6e-21  Score=167.21  Aligned_cols=185  Identities=15%  Similarity=0.181  Sum_probs=127.9

Q ss_pred             ceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhhhc
Q psy10004         83 KDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIG  159 (354)
Q Consensus        83 ~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l~  159 (354)
                      .||+||||.||||.+.+++.+|.++..+++.|.   .+.+|+|+.|++.++..++     +......+...+...++++.
T Consensus         2 lDivfvlD~SgSm~~~~~~~~k~~~~~li~~l~~~~~~~rv~lv~f~~~~~~~~~-----l~~~~~~~~~~l~~~i~~i~   76 (209)
T d1q0pa_           2 MNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----VSEADSSNADWVTKQLNEIN   76 (209)
T ss_dssp             EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHHTCC
T ss_pred             cCEEEEEeCCCCCChHHHHHHHHHHHHHHHhcccCCCCcEEEEEEecCceeEEec-----CccchhhHHHHHHHHHHHhh
Confidence            589999999999999999999999999999874   6679999999999877654     22334456677788888772


Q ss_pred             ----CCCCCCcHHHHHHHHHHHHHhccccC-CCCCCCcceEEEeccCCCCc---hHHHHHHhhhc-c----cCCCCCCCe
Q psy10004        160 ----DANNIANFTVALTRAFNILENARNDK-KTGADCNQAIMVVTDGASEN---YKEVFEEFNWR-G----QNDSTLWPV  226 (354)
Q Consensus       160 ----~~~G~T~~~~aL~~A~~~l~~~~~~~-~~~~~~~~~IillTDG~~~~---~~~i~~~~~~~-~----~~~~~~~~v  226 (354)
                          ..+|+|++..||+.|++.+....... ...+++.++|||+|||.++.   +....+.++.. .    .......++
T Consensus        77 ~~~~~~~g~t~~~~al~~a~~~~~~~~~~~~~~~~~~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  156 (209)
T d1q0pa_          77 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL  156 (209)
T ss_dssp             TTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGE
T ss_pred             hccccCCCCchHHHHHHHHHHHHHhhhccCccccCCCceEEEEEcCCCccCCCChHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence                36788999999999999986543321 12345668999999999874   33333332100 0    111124579


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHhcCCc--EEEEeCChhHHHHHHHHHHHH
Q psy10004        227 RVFSYLVGKEVADYRDVKWMACANKG--YYVHLSTLAEVRDQILSYVPV  273 (354)
Q Consensus       227 ~IftigiG~~~~~~~~L~~iA~~~~G--~~~~i~~~~~~~~~l~~~~~~  273 (354)
                      .+|+||+|.+. +..+|+.||+.++|  +++.+.+.+++.+.+.++++.
T Consensus       157 ~i~~vgvg~~~-~~~~L~~iAs~~~~~~~~f~~~~~~~L~~~~~~ii~~  204 (209)
T d1q0pa_         157 DVYVFGVGPLV-NQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDE  204 (209)
T ss_dssp             EEEEEECSSCC-CHHHHHHHSCCCTTCCCEEETTC--------------
T ss_pred             ceEEecCCccC-CHHHHHHHHcCCCCCeeEEEeCCHHHHHHHHHHHHHh
Confidence            99999999887 89999999987765  477788888877766666554
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure