Psyllid ID: psy10046
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | 2.2.26 [Sep-21-2011] | |||||||
| Q8K1C7 | 512 | Monocarboxylate transport | yes | N/A | 0.279 | 0.439 | 0.370 | 7e-43 | |
| Q7RTX9 | 510 | Monocarboxylate transport | yes | N/A | 0.245 | 0.388 | 0.405 | 4e-42 | |
| Q6P2X9 | 473 | Monocarboxylate transport | yes | N/A | 0.257 | 0.437 | 0.362 | 9e-39 | |
| Q6GM59 | 460 | Monocarboxylate transport | N/A | N/A | 0.221 | 0.386 | 0.387 | 3e-38 | |
| Q6ZSM3 | 486 | Monocarboxylate transport | no | N/A | 0.269 | 0.446 | 0.318 | 2e-37 | |
| Q503M4 | 477 | Monocarboxylate transport | no | N/A | 0.319 | 0.538 | 0.334 | 2e-37 | |
| Q8BGC3 | 486 | Monocarboxylate transport | no | N/A | 0.254 | 0.421 | 0.336 | 3e-37 | |
| Q5R5M4 | 509 | Monocarboxylate transport | no | N/A | 0.357 | 0.565 | 0.315 | 2e-34 | |
| Q7TM99 | 508 | Monocarboxylate transport | no | N/A | 0.229 | 0.364 | 0.398 | 2e-34 | |
| Q5ZJU0 | 507 | Monocarboxylate transport | no | N/A | 0.278 | 0.441 | 0.336 | 3e-34 |
| >sp|Q8K1C7|MOT14_MOUSE Monocarboxylate transporter 14 OS=Mus musculus GN=Slc16a14 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 176 bits (446), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 137/232 (59%), Gaps = 7/232 (3%)
Query: 140 EDEEEGNTREEEDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSK 199
+D + N + + DGGW WM+VL++FF+++ G + G+L +E+L EF S+
Sbjct: 14 DDRKAKNKKTLKPHPDIDGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRGL 73
Query: 200 TAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259
TAW+ SL M + L++GP F+ GCR I+ G+++ +G+VLS ++ ++ +++TFG
Sbjct: 74 TAWVSSLSMGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVQSLFITFG 133
Query: 260 LLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGT 319
+ AG+G ++Y+ AVV + +F+K+R LA L +TGTGFGT + + YL +EYGWR
Sbjct: 134 VAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNA 193
Query: 320 VLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTES 371
+ + NLCVCGA+MR LE E + C +Y TES
Sbjct: 194 MFIQGALSLNLCVCGALMRPLSPEKLENCPEAE-------EPCALPAYSTES 238
|
Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates. Mus musculus (taxid: 10090) |
| >sp|Q7RTX9|MOT14_HUMAN Monocarboxylate transporter 14 OS=Homo sapiens GN=SLC16A14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 129/200 (64%), Gaps = 2/200 (1%)
Query: 141 DEEEGNTREEEDSKIP--DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKS 198
D E+G ++ P DGGW WM+VL++FF+++ G + G+L +E+L EF S+
Sbjct: 11 DFEDGPKDKKTLKPHPNIDGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRG 70
Query: 199 KTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTF 258
TAW+ SL M + L++GP F+ GCR I+ G+++ +G+VLS ++ + ++++TF
Sbjct: 71 LTAWVSSLSMGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVHYLFITF 130
Query: 259 GLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318
G+ AG+G ++Y+ AVV + +F+K+R LA L +TGTGFGT + + YL +EYGWR
Sbjct: 131 GVAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRN 190
Query: 319 TVLLLSGTFFNLCVCGAIMR 338
+L+ NLCVCGA+MR
Sbjct: 191 AMLIQGAVSLNLCVCGALMR 210
|
Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates. Homo sapiens (taxid: 9606) |
| >sp|Q6P2X9|MOT12_XENTR Monocarboxylate transporter 12 OS=Xenopus tropicalis GN=slc16a12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 125/215 (58%), Gaps = 8/215 (3%)
Query: 156 PDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLG 215
PDGGWGWM+V+ FF+ + + + ++EF + F ++TAWI S+ +L
Sbjct: 13 PDGGWGWMIVIGCFFVTVCTRAVTRCISIFFVEFQSYFAQDYARTAWIHSIVDCSTMLCA 72
Query: 216 PVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV 275
P+ S F C+ I+ G+++ G VLS F+ ++E++YLT G+L G+G AL Y A+
Sbjct: 73 PIGSYVSNHFSCQVGIILGGVLASTGLVLSSFATSLEYLYLTLGVLTGLGFALCYSPAIA 132
Query: 276 SIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335
+ +FEK++ LA + +G+G GT + AP+ LI ++ WRG +L+L G NLCVCGA
Sbjct: 133 MVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVSNLCVCGA 192
Query: 336 IMR------DPEWWTLEQNKEKDLKSIKGA--SSC 362
+MR D + L+Q + ++ + G SSC
Sbjct: 193 LMRPITLKEDSLHYPLKQEQMENEPTQSGRLDSSC 227
|
Proton-linked monocarboxylate transporter. Xenopus tropicalis (taxid: 8364) |
| >sp|Q6GM59|MOT12_XENLA Monocarboxylate transporter 12 OS=Xenopus laevis GN=slc16a12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 112/183 (61%)
Query: 156 PDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLG 215
PDGGWGWM+V+ FF+ + + + ++EF + F ++TAWI S+ +L
Sbjct: 13 PDGGWGWMIVIGCFFVTVCTRAVTRCISIFFVEFQSYFAQDYARTAWIHSIVDCSTMLCA 72
Query: 216 PVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV 275
P+ S F C+ I+ G+++ G VLS F+ ++E++YLT G+L G+G AL Y A+
Sbjct: 73 PIGSYVSNHFSCQVGIILGGVLASTGLVLSSFATSLEYLYLTLGVLTGLGFALCYSPAIA 132
Query: 276 SIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335
+ +FEK++ LA + +G+G GT + AP+ LI ++ WRG +L+L G NLCVCGA
Sbjct: 133 MVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVSNLCVCGA 192
Query: 336 IMR 338
+MR
Sbjct: 193 LMR 195
|
Proton-linked monocarboxylate transporter. Xenopus laevis (taxid: 8355) |
| >sp|Q6ZSM3|MOT12_HUMAN Monocarboxylate transporter 12 OS=Homo sapiens GN=SLC16A12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 145 GNTREEEDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIG 204
+ PDGGWGWM+V F + + + + ++EF F ++TAWI
Sbjct: 2 AKVNRARSTSPPDGGWGWMIVAGCFLVTICTRAVTRCISIFFVEFQTYFTQDYAQTAWIH 61
Query: 205 SLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI 264
S+ V +L P+ S C+ ++ G+++ G +LS F+ +++H+YLT G+L G+
Sbjct: 62 SIVDCVTMLCAPLGSVVSNHLSCQVGIMLGGLLASTGLILSSFATSLKHLYLTLGVLTGL 121
Query: 265 GLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLS 324
G AL Y A+ + +F +++ LA + +G+G GT + AP+ LI ++ WRG +L+L
Sbjct: 122 GFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILG 181
Query: 325 GTFFNLCVCGAIMR---------DPEWWTLEQNKEKDLKSIKGASS 361
G NLCVCGA+MR PE + + +++D+K + SS
Sbjct: 182 GFVLNLCVCGALMRPITLKEDHTTPEQNHVCRTQKEDIKRVSPYSS 227
|
Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates. Homo sapiens (taxid: 9606) |
| >sp|Q503M4|MT12B_DANRE Monocarboxylate transporter 12-B OS=Danio rerio GN=slc16a12b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 134/266 (50%), Gaps = 9/266 (3%)
Query: 156 PDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLG 215
PDGGWGWM+V F + + + + ++EF F S TAWI SL +L
Sbjct: 13 PDGGWGWMIVAGCFVVTVCTRAVTRCISIFFVEFQMHFAKDYSGTAWIHSLVDCTTMLCA 72
Query: 216 PVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV 275
P+ S + CR I+ G ++ VG VLS F+ ++E++Y T GLL G+G AL Y A+
Sbjct: 73 PLGSLIGNQLSCRIAVILGGFLASVGLVLSSFATSLEYLYATLGLLTGLGFALCYTPAIA 132
Query: 276 SIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335
+ +F +++ LA + +G+G GT + AP+ LI Y WRG +L+L G NLCVCGA
Sbjct: 133 MVGIYFCERKALAYGIAMSGSGIGTFILAPVVQLLIEHYSWRGALLILGGFVLNLCVCGA 192
Query: 336 IMR-----DPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESG--VT 388
++R + E L + E S+K + G + SD + M E +
Sbjct: 193 LLRPIILKEEEACPLPVDSECG-YSVKPPTLNGGPTRSAASDAKQ-RCFQSMQEYHFLLM 250
Query: 389 PDFIETSVATELNAETCKFSSVINIP 414
PDF+ + + L A C V +P
Sbjct: 251 PDFLVLAGSFLLLASGCSLPFVYLVP 276
|
Proton-linked monocarboxylate transporter. Danio rerio (taxid: 7955) |
| >sp|Q8BGC3|MOT12_MOUSE Monocarboxylate transporter 12 OS=Mus musculus GN=Slc16a12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 118/211 (55%), Gaps = 6/211 (2%)
Query: 156 PDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLG 215
PDGGWGWM+V F + + + + ++EF F S+TAWI S+ + +L
Sbjct: 13 PDGGWGWMIVAGCFLVTICTRAVTRCISIFFVEFQTYFAQDYSQTAWIHSIVDCMTMLCA 72
Query: 216 PVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV 275
P+ S + C++ ++ G+++ GF+L F+ +++H+YL+ G+L G+G AL Y A+
Sbjct: 73 PLGSVVSNQLSCQAGIMLGGLLASTGFILGSFATSLKHLYLSLGVLTGLGFALCYSPAIA 132
Query: 276 SIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335
+ +F +++ LA + +G+G GT + AP+ LI ++ WRG +L+L G NLCVCGA
Sbjct: 133 MVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVLNLCVCGA 192
Query: 336 IMR------DPEWWTLEQNKEKDLKSIKGAS 360
+MR D N+E + K AS
Sbjct: 193 LMRPITLKEDRSVPEKNHNRESQREDCKQAS 223
|
Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates. Mus musculus (taxid: 10090) |
| >sp|Q5R5M4|MOT9_PONAB Monocarboxylate transporter 9 OS=Pongo abelii GN=SLC16A9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 152/326 (46%), Gaps = 38/326 (11%)
Query: 151 EDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAV 210
E K PDGGWGW++V +FF G + G+LYIE+L+ FG K KTAW+GSL V
Sbjct: 2 ELKKSPDGGWGWVIVFVSFFTQFLCYGSPLAVGVLYIEWLDAFGEGKGKTAWVGSLASGV 61
Query: 211 PLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSY 270
LL PV S V FG R +TI +G + G +LS F+ I ++ ++G++ G+G L Y
Sbjct: 62 GLLASPVCSLCVSSFGARPVTIFSGFMVAGGLMLSSFAPNIYFLFFSYGIVVGLGCGLLY 121
Query: 271 VTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330
V +F+ +RGLA L STG+ G +YA + L+ YG G +L++ N+
Sbjct: 122 TATVTITCLYFDDRRGLALGLISTGSSVGLFIYAALQRMLVEFYGLDGCLLIVGALALNI 181
Query: 331 CVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPD-IEVLKEM---LESG 386
CG++MR + +S C D+PD + E LE
Sbjct: 182 LACGSLMRPLQ-----------------SSDCPLPKKIAPEDLPDKYSIYNEKGKNLEEN 224
Query: 387 VTPDFIETSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRT 446
+ + +E S ++E E C+ T + KQD +P T + K PE +
Sbjct: 225 I--NILEKSYSSE---EKCR-------TTLANGDWKQDSLLHKNP--TVTHTKEPETYKK 270
Query: 447 AAELEDSFT---APKLRQLQKTLSAE 469
+ F A + QL K E
Sbjct: 271 KVAEQTYFCKQLAKRKWQLYKNYCGE 296
|
Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates. Pongo abelii (taxid: 9601) |
| >sp|Q7TM99|MOT9_MOUSE Monocarboxylate transporter 9 OS=Mus musculus GN=Slc16a9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 109/188 (57%)
Query: 151 EDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAV 210
E K PDGGWGW++V+ +FF G + G+LY+E+L+ FG K KTAW+GSL V
Sbjct: 2 EFQKSPDGGWGWVIVVVSFFTQFLSYGSPLAVGVLYVEWLDAFGEGKGKTAWVGSLASGV 61
Query: 211 PLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSY 270
LL PV S FV FG R +TI +G + G +LS + I ++ ++G++ G+G L Y
Sbjct: 62 GLLASPVCSLFVSSFGARPVTIFSGFLVAGGLMLSSLAPNIYFLFFSYGIVVGLGCGLLY 121
Query: 271 VTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330
V +F+ +RGLA L STG+ G +YA + LI YG G +L++ N+
Sbjct: 122 TATVTITCQYFDSRRGLALGLISTGSSVGLFIYAALQRMLIEFYGLDGCLLIVGALALNI 181
Query: 331 CVCGAIMR 338
CG++MR
Sbjct: 182 LACGSLMR 189
|
Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates. Mus musculus (taxid: 10090) |
| >sp|Q5ZJU0|MOT9_CHICK Monocarboxylate transporter 9 OS=Gallus gallus GN=SLC16A9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 127/241 (52%), Gaps = 17/241 (7%)
Query: 154 KIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLL 213
K PDGGWGW++V+ +FF G + G+LY+E+L+ FG K KTAW+GSL + LL
Sbjct: 5 KPPDGGWGWVIVIVSFFTQFLCYGSPLAVGVLYLEWLDAFGEGKGKTAWVGSLANGIGLL 64
Query: 214 LGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTA 273
PV S V FG R + I +G + G ++S F+ I +YL++G++ G+G L Y
Sbjct: 65 ASPVCSICVSSFGARPVAIFSGFMVAGGLMMSSFAPNIYFLYLSYGIVVGLGCGLLYNAT 124
Query: 274 VVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333
V +F+K+RGLA L STG+ G +YA + LI YG G +L++ N+ C
Sbjct: 125 VTITCQYFDKRRGLALGLISTGSSVGLFIYAALQRELIELYGLDGCLLIVGALSLNILAC 184
Query: 334 GAIMRD-----------------PEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDI 376
G++MR P+ + + KEK ++ G + + +++PD
Sbjct: 185 GSLMRPLESSDSPSPEKACTDKVPDQYFVYHEKEKTVEENISILEKGYIDEKCANNVPDY 244
Query: 377 E 377
+
Sbjct: 245 K 245
|
Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | ||||||
| 307167293 | 838 | Monocarboxylate transporter 14 [Camponot | 0.763 | 0.733 | 0.448 | 1e-156 | |
| 322779028 | 925 | hypothetical protein SINV_03477 [Solenop | 0.785 | 0.683 | 0.430 | 1e-152 | |
| 156544834 | 987 | PREDICTED: hypothetical protein LOC10012 | 0.760 | 0.620 | 0.448 | 1e-151 | |
| 383853225 | 988 | PREDICTED: uncharacterized protein LOC10 | 0.766 | 0.624 | 0.450 | 1e-149 | |
| 193603536 | 830 | PREDICTED: monocarboxylate transporter 1 | 0.750 | 0.727 | 0.445 | 1e-148 | |
| 350408721 | 990 | PREDICTED: hypothetical protein LOC10074 | 0.756 | 0.615 | 0.435 | 1e-148 | |
| 340717005 | 990 | PREDICTED: hypothetical protein LOC10064 | 0.757 | 0.616 | 0.432 | 1e-148 | |
| 307206277 | 858 | Monocarboxylate transporter 14 [Harpegna | 0.740 | 0.694 | 0.456 | 1e-148 | |
| 380018450 | 976 | PREDICTED: uncharacterized protein LOC10 | 0.845 | 0.697 | 0.389 | 1e-147 | |
| 110758321 | 993 | PREDICTED: hypothetical protein LOC41006 | 0.847 | 0.686 | 0.399 | 1e-146 |
| >gi|307167293|gb|EFN60961.1| Monocarboxylate transporter 14 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 316/704 (44%), Positives = 430/704 (61%), Gaps = 89/704 (12%)
Query: 138 DSEDEEEGNTREEEDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASK 197
+ +D E ++ + KIPDGGWGWMVVLA+ ++M DGI+FSFGLLYIEFL+EFG SK
Sbjct: 131 EHQDSLESIEKKHKKPKIPDGGWGWMVVLASLVVSMIADGISFSFGLLYIEFLHEFGESK 190
Query: 198 SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLT 257
SKTAWIGSLFMAVPLL GP+ SA V+++GCR MTI+ G+ISG GF++S F RTIE MYLT
Sbjct: 191 SKTAWIGSLFMAVPLLSGPIMSALVDRYGCRKMTILGGLISGAGFIMSMFGRTIEVMYLT 250
Query: 258 FGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWR 317
FG++AG+GL L YVTAVVS+AFWF+KKR LA LG+ GTG GT VYAP+T++ I+EYGWR
Sbjct: 251 FGVIAGLGLGLCYVTAVVSVAFWFDKKRTLATGLGACGTGIGTFVYAPMTTFFIAEYGWR 310
Query: 318 GTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSV--SYRTESDMPD 375
GT LLL+GTFFN+ V GA+MRDPEW T EQ ++ + K S G + S + P
Sbjct: 311 GTTLLLAGTFFNMIVAGAVMRDPEWLTWEQKQDAESKK-SNVRSDGMIKPSGSPSDEFPG 369
Query: 376 IEVLKEMLESGVTPD-FIETSVATELNAETCKFSSVINIPTYIRNNEK-----QDVHKSS 429
+E L+++L S P+ F++ + + +SV+N+PT+++ +EK ++ +S+
Sbjct: 370 VEELRKLLRSDRAPECFLQNLSTSTADGGKRHTTSVVNLPTFVKRSEKVPLEVLELLRSN 429
Query: 430 DPFTTPENPKYPE----PNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNH 485
YP + + +L +S T + T+S RA+E + P +N+
Sbjct: 430 SKLYNVILENYPSLLLCRSSSDKQLHES-TGEISNKRGVTMSMRLKRATESKTIPEQRNN 488
Query: 486 SVESDG--PHEPLVSAGKGND-----------------SNRCKSMSPPGNLG-RQH---- 521
+ G +VS+ K + + R KSMS QH
Sbjct: 489 DCPASGIPASTKIVSSRKMSKKEIEEINPLLKEVTVVPTERKKSMSIKRYFDVEQHPNVV 548
Query: 522 RSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTNLG 581
R+DS PWL+R+FS THY K ++VHR ++ G + L + +
Sbjct: 549 RTDSKPWLKRKFS----TTHYFKDIRVHRN---SVMYRG---------ASLNLHK----- 587
Query: 582 LLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDD 641
+ LR S SC I+ S +I + TE W +
Sbjct: 588 ----------YRLRAS-SC-----PNIYRNS-------------MITLDKETEQ-KWYTE 617
Query: 642 ARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSY 701
+L+ MFDFSMFLE HFLL+S++TILLFTWF++PYFYL + ++ + +A +LS
Sbjct: 618 LMDLLKSMFDFSMFLEFHFLLMSLATILLFTWFIVPYFYLAEHLSRNNYDESDAARLLSI 677
Query: 702 IGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGI 761
IG+TNT+GM+ LGWA DQPW+NV KTY+ CL+ CGVST LM +F +Y L+ T +FG+
Sbjct: 678 IGITNTIGMIVLGWAGDQPWMNVCKTYSWCLVACGVSTLLMSIFTHHYPYLMTTSAAFGL 737
Query: 762 FFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
FFASN+S TP+ILVEL+PL+RF TAYGLTLL QGIGNLVGPPLA
Sbjct: 738 FFASNYSFTPVILVELIPLERFTTAYGLTLLCQGIGNLVGPPLA 781
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322779028|gb|EFZ09427.1| hypothetical protein SINV_03477 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 314/730 (43%), Positives = 429/730 (58%), Gaps = 98/730 (13%)
Query: 115 RSLDTVQKSSDTEYEG----VKFSGVPDSEDEEEGNTREEEDSKIPDGGWGWMVVLAAFF 170
R D++ S +E E ++ GV + ++G + +K+PDGGWGW+VVLA+
Sbjct: 198 RVKDSIDSLSISEREDSLSFIRERGVARDDGRDDG-----KKAKVPDGGWGWVVVLASLV 252
Query: 171 INMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSM 230
I+M DG++FSFGLLYIEFL+EFGASKSKTAWIGSLFMAVPLL GP+ SA V+++GCR+M
Sbjct: 253 ISMIADGVSFSFGLLYIEFLHEFGASKSKTAWIGSLFMAVPLLSGPIMSALVDRYGCRNM 312
Query: 231 TIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACS 290
TI G+ISG GF+LS FS TIE MYLTFG++AG+GL + YVTAVVSIAFWF+KKR LA
Sbjct: 313 TIAGGLISGFGFILSIFSNTIEIMYLTFGVIAGLGLGMCYVTAVVSIAFWFDKKRTLAVG 372
Query: 291 LGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKE 350
LG+ GTG GT VYAP+T+Y I EYGWRG LLL+GTFFN+ V G +MRDPEWW LEQ K+
Sbjct: 373 LGACGTGIGTFVYAPMTTYFIEEYGWRGACLLLAGTFFNMIVAGTVMRDPEWWILEQRKQ 432
Query: 351 KDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNA---ETCKF 407
+++ S G + + P +E L+++L S P + +++T A +
Sbjct: 433 D--QALLAKKSHGRSDGSSSDEFPGVEELRKLLRSDHAPQYFLQNLSTSTKAVDGGKRQT 490
Query: 408 SSVINIPTYIRNNEK-----QDVHKSSDPFTTPENPKYPE----PNRTAAELEDSFTAPK 458
+SV+N+PT+++ +EK ++ S+ T YP + + +L+DS T
Sbjct: 491 TSVVNLPTFVKRSEKVPLEVLELLLSNSRLYTVILENYPSLLLCRSSSDKQLQDS-TGEI 549
Query: 459 LRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKS-------- 510
+ T+S RA+E + + S P + LV A K + R ++
Sbjct: 550 CNKSSVTMSMRLKRATESKEMTEQRKDSTSVHVPTK-LVCARKMSKKEREETNPLLSKEV 608
Query: 511 ------MSPPGNLGRQH---------RSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQ 555
+L R++ R+DS PWLRRQFS THY K ++VHR
Sbjct: 609 THTVVPSEKRKSLSRRYVEPEANSVIRTDSVPWLRRQFSTN---THYFKDIRVHRN---S 662
Query: 556 ILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYL 615
++ G NL L R+S + + Q W
Sbjct: 663 VMYRGAA---------------LNLHKYRLRASSCPDIYRNSMTTLAKENEQKW------ 701
Query: 616 AGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFV 675
+ + +L ++ F+ MF LE HFLL+S+STILLFTWF+
Sbjct: 702 ---YTELVDLLKGMLNFS---------------MF-----LEFHFLLMSLSTILLFTWFI 738
Query: 676 IPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGC 735
+PYFYL + +T G ++ +A ++LS IG+TNT+GMV LGWA DQPW+NV KTY CLI C
Sbjct: 739 VPYFYLAEHLTRNGYAESDAANLLSIIGITNTIGMVGLGWAGDQPWMNVSKTYTWCLIAC 798
Query: 736 GVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQG 795
GV+T LM +F +Y L + +FG+FFAS FS TP+ILVEL+PL+RF TAYGL+LL QG
Sbjct: 799 GVATILMSVFTNHYVLLSTSSAAFGLFFASTFSFTPVILVELIPLERFTTAYGLSLLCQG 858
Query: 796 IGNLVGPPLA 805
IGNL+GPPLA
Sbjct: 859 IGNLLGPPLA 868
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156544834|ref|XP_001606804.1| PREDICTED: hypothetical protein LOC100123194 isoform 1 [Nasonia vitripennis] gi|345480926|ref|XP_003424247.1| PREDICTED: hypothetical protein LOC100123194 isoform 2 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 323/720 (44%), Positives = 431/720 (59%), Gaps = 108/720 (15%)
Query: 141 DEEEGNTREEEDSK---IPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASK 197
D+E+ N+ EE+ K IPDGGWGW+VV ++ I+M DG++FSFGLLYIEFL+ F SK
Sbjct: 266 DDEDDNSTEEDSKKKPKIPDGGWGWVVVCSSLVISMIADGVSFSFGLLYIEFLHHFEESK 325
Query: 198 SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLT 257
+ TAWIGSLFMAVPLL GP+ SA V+++GCR MTI G+ISG GFVLS F+ +I MYLT
Sbjct: 326 ANTAWIGSLFMAVPLLSGPIMSALVDRYGCRKMTIAGGLISGTGFVLSSFANSIGVMYLT 385
Query: 258 FGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWR 317
FG+LAG+GL L YVTAVVSIAFWF+KKR LA LG+ GTG GT VYAP+T+Y I E+GWR
Sbjct: 386 FGVLAGLGLGLCYVTAVVSIAFWFDKKRTLAVGLGACGTGIGTFVYAPMTTYFIQEFGWR 445
Query: 318 GTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCG-----------SVS 366
G VLLLSGTFFN+ VCG +MRDPEWW LEQ K++ L S K + G S
Sbjct: 446 GCVLLLSGTFFNMIVCGTVMRDPEWWILEQKKQQGLTSPKKSGKGGNGAKLQDGMSRSQG 505
Query: 367 YRTESDMPDIEVLKEMLESGVTPDFI----ETSVATELNAE-TCKFSSVINIPTYIRNNE 421
T+ D P +E L+ +++SG P+++ TS T +N+ F SV+N+PT++R +E
Sbjct: 506 SPTDEDFPGVEELRRLMKSGKAPEYLLQNLRTSTETRVNSSGNPAFRSVVNLPTFVRQSE 565
Query: 422 K------QDVHKSSDPFT-------------TPENPKYPEPN---------RTAAELED- 452
K + + +S + + + K E N + L+D
Sbjct: 566 KVPLEVLESLSSNSRLYNVILENYPSLLLCRSASDKKLDESNGDVNNKSGVTMSMRLQDW 625
Query: 453 -SFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSM 511
K ++ Q + S +++ + +E P A ++ R KS+
Sbjct: 626 LKQAKDKGKKQQSSRSGSTHASTKVLAARRMSRKDLEEANPLLAKELAQAIAEAERAKSV 685
Query: 512 SP---PGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFL 568
S PG R+DS PWLRRQFS THY K ++VH
Sbjct: 686 SRHHLPGCGAGVVRTDSLPWLRRQFSTN---THYFKDIRVH------------------- 723
Query: 569 HSKLGVRRDTNLGLLVLPGRILDHH---LRDSHSCWVFDVTQIWDYSFYLAGFWIIISGI 625
R++ ++ G +L+ H LR S SC I+ S
Sbjct: 724 -------RNS----VMYRGAVLNLHKYRLRAS-SC-----PNIYRNS------------- 753
Query: 626 LIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFV 685
+ + W + +L+ GM DFSMF ELHFLL+S+STILLFTWF++PYFYL + +
Sbjct: 754 -MTTLAKENEEKWYSELVDLMKGMMDFSMFSELHFLLLSLSTILLFTWFIVPYFYLAEHL 812
Query: 686 TNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLF 745
+ QG + ++ ++LSYIG+TNT+GM+ALGWA DQPW+NV KTY CLI CG+ST LMP+F
Sbjct: 813 SRQGYQESQSANLLSYIGITNTIGMIALGWAGDQPWMNVTKTYTCCLIACGISTILMPIF 872
Query: 746 ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
+ NY AL+ C FG+FFASNFS TP+ILVE++PL+RF TAYGL+LL QGIGNL+GPPLA
Sbjct: 873 SHNYAALVVICCCFGLFFASNFSFTPVILVEIIPLERFTTAYGLSLLCQGIGNLLGPPLA 932
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383853225|ref|XP_003702123.1| PREDICTED: uncharacterized protein LOC100881636 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 321/712 (45%), Positives = 429/712 (60%), Gaps = 95/712 (13%)
Query: 138 DSEDEEEGNTREE---EDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFG 194
DS + EG +R++ K+PDGGWGW+VVLA+ I+M DG++FSFGLLYIEFL EFG
Sbjct: 273 DSVLDLEGESRDKILPGKPKVPDGGWGWVVVLASLIISMIADGVSFSFGLLYIEFLQEFG 332
Query: 195 ASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHM 254
ASKSKTAWIGSLFMAVPLL GP+ SA V+++GCR+MTI+ G+ISG+GFVLSCFS TIE M
Sbjct: 333 ASKSKTAWIGSLFMAVPLLSGPIMSALVDRYGCRAMTILGGLISGLGFVLSCFSNTIEVM 392
Query: 255 YLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY 314
YLTFG++AG+GL L YVTAVVSIA+WF+KKR LA LG+ GTG GT VYAP+T++ I EY
Sbjct: 393 YLTFGVIAGLGLGLCYVTAVVSIAYWFDKKRTLAVGLGACGTGIGTFVYAPMTTFFIEEY 452
Query: 315 GWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGA--SSCGSVSYRTESD 372
GWRGT LLL+GTFFN+ VCG +MRDPEWW +EQ K+ K S C +
Sbjct: 453 GWRGTCLLLAGTFFNMIVCGTVMRDPEWWIIEQQKQNGTTPKKSTTKSECERSIASPVDE 512
Query: 373 MPDIEVLKEMLESGVTPDFIETSVATELNAE-----TCKFSSVINIPTYIRNNEKQDVHK 427
P +E L+ ML+SG TP+++ ++T + KF SV+N+PT++++NEK V
Sbjct: 513 FPGVEELRRMLKSGHTPEYLLQILSTTTDDPHSSNGDVKFRSVVNLPTFVKHNEKVPVEV 572
Query: 428 SSDPFTTPENPK-----YPE----PNRTAAELEDSFTAPKLRQLQKTLSAEADRASE-PR 477
T P K YP + + +L+DS + + T+S +A++ P+
Sbjct: 573 LEQLATNPRLCKVILENYPNLLSCRSYSDKKLQDSVGEVGNKSVV-TMSMRIKQATDGPK 631
Query: 478 GKPL--------------VKNHSVESDGPHE-----PLVSAGKGNDSNRCKSMSPPGN-L 517
+ +KNH + E PL++ + + + + P
Sbjct: 632 SEDTHVTNNVHPGSTCNSIKNHITKKMSKKESEEANPLLTKEQEHTVTDSRKVKPASKGF 691
Query: 518 GRQH----RSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLG 573
G + R+DS PWLRRQF+ THY K ++V H
Sbjct: 692 GELNCGVVRTDSLPWLRRQFNTN---THYFKDIRV--------------------HRNSV 728
Query: 574 VRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFT 633
+ R L L + LR S SC I+ S + +
Sbjct: 729 MYRGAALNLH-------KYRLRAS-SC-----PDIYRNS--------------MTTLAKE 761
Query: 634 ENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKE 693
W + +L+ GM DFSMFLELHFLL+S+STILLFTWF++PYFYL + +T ++
Sbjct: 762 NEEKWYSELVDLLKGMMDFSMFLELHFLLLSLSTILLFTWFIVPYFYLAEHLTRNSYTET 821
Query: 694 EATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALL 753
+A ++LS IG+TNT+GM+ LGWA DQPW+NV KTY CL+ CG++T LM + Y L+
Sbjct: 822 DAANLLSIIGITNTIGMIGLGWAGDQPWMNVSKTYTWCLVACGIATVLMSILTPYYNLLM 881
Query: 754 FTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
T +FG+FFASNFS TP+ILVEL+PL+RF TAYGL+LL QGIGNL+GPPLA
Sbjct: 882 ITSAAFGLFFASNFSFTPVILVELIPLERFTTAYGLSLLCQGIGNLLGPPLA 933
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193603536|ref|XP_001945535.1| PREDICTED: monocarboxylate transporter 14-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 317/711 (44%), Positives = 413/711 (58%), Gaps = 107/711 (15%)
Query: 154 KIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLL 213
KIPDGGWGWMVV A+ I + DGI+FSFGLLYIEFL EF SKSKTAWIGSLFMAVPL+
Sbjct: 114 KIPDGGWGWMVVFASLMICLISDGISFSFGLLYIEFLKEFQESKSKTAWIGSLFMAVPLI 173
Query: 214 LGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTA 273
LGPV SA V+KFGCR MTI+ G+ISG+GF++S F+ +IE ++ TFG L+G+GL L YVTA
Sbjct: 174 LGPVGSALVDKFGCRKMTILGGVISGLGFIISSFADSIEMVFFTFGFLSGLGLCLCYVTA 233
Query: 274 VVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333
VVSIA+WF+KKR LA LG+ GTG GT +YAP+T Y I EYGWRGTVLLL+GTFFN CVC
Sbjct: 234 VVSIAYWFDKKRTLATGLGACGTGIGTLLYAPMTQYSIEEYGWRGTVLLLAGTFFNFCVC 293
Query: 334 GAIMRDPEWWTLEQNKEKDLKSIKGASS--------------CGSVSYRTES-------- 371
GA+MRDP+W EQ K GA + C V E+
Sbjct: 294 GALMRDPDWLIAEQKKPAVTGGHSGAVTTKPWTDTEESIVDHCPVVGVENETVTASTGRT 353
Query: 372 ----------------DMPDIEVLKEMLESGVTPDFIETSVATELNA------------E 403
P +E + M++ ++ T V T + +
Sbjct: 354 KGIDLIASEPDVDALMQYPGVEQYRRMVKEAQCAEYKLTGVTTTVRSPMTDGVRRLPDDN 413
Query: 404 TCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQ 463
TC F SVIN+PTY+++NEK PF E+ N+T L P L +
Sbjct: 414 TC-FRSVINLPTYLKHNEKV-------PFEVLESL---SSNKTLFNLILE-NYPNLLLCR 461
Query: 464 KTLSAEADRASEPRGKPLV-------KNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGN 516
+ ++ + AS GK L K++++ SD P PLV K S + SM
Sbjct: 462 SSSVSQVNNAS--VGKDLSDTRTVYNKDNALRSDSP--PLVMKMKLKQSKKSNSMGSGVI 517
Query: 517 LGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRR 576
+ ++ S P + ++ P +H K H +L Q L R
Sbjct: 518 SPLESQAISPP---QTYTADNSPE---RHPKAHH----SMLKRQFSTTQSSYLKSLPYHR 567
Query: 577 DTNLGLLVLPGRILD--HHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTE 634
+ ++ G IL+ + + SC I++ + S + + P +E
Sbjct: 568 SS----VMYKGAILNIQKNSMKASSC-----PDIYNNN----------STLTVTSEPDSE 608
Query: 635 NTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEE 694
W + +EL G+ DFSMFLELHFL +S+STILLFTWF++PYFYLTDFV QGLS+ +
Sbjct: 609 ---WYTEVKELFSGILDFSMFLELHFLFLSLSTILLFTWFIVPYFYLTDFVMAQGLSETD 665
Query: 695 ATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLF 754
A++I+S IG TNTVGM+ LGWA D PW+NV K YA CL+GCG+ A+MPLF +++W+L+
Sbjct: 666 ASTIISTIGATNTVGMILLGWAGDYPWMNVTKVYAICLVGCGICCAIMPLFISSFWSLIV 725
Query: 755 TCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
+FG+FFASNFS TP ILVEL+PLDRF TAYGL LL QGIGNL+GPPLA
Sbjct: 726 IGAAFGLFFASNFSFTPAILVELIPLDRFTTAYGLMLLCQGIGNLLGPPLA 776
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350408721|ref|XP_003488489.1| PREDICTED: hypothetical protein LOC100749120 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 313/718 (43%), Positives = 418/718 (58%), Gaps = 109/718 (15%)
Query: 138 DSEDEEEGNTREEEDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASK 197
DS ++E + + K+PDGGWGW+VVLA+ I+M DG++FSFGLLYIEFL EFGASK
Sbjct: 277 DSTLDDELANKGKRKPKVPDGGWGWVVVLASLVISMIADGVSFSFGLLYIEFLKEFGASK 336
Query: 198 SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLT 257
SKTAWIGSLFMAVPLL GP+ SA V+++GCRSMTIV G+ISG+GFVLS FS +IE MYLT
Sbjct: 337 SKTAWIGSLFMAVPLLSGPIMSALVDRYGCRSMTIVGGLISGIGFVLSSFSNSIEVMYLT 396
Query: 258 FGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWR 317
FG++AG+GL L YVTAVVSIA+WF+KKR LA LG+ GTG GT +YAP+T+Y I EYGWR
Sbjct: 397 FGVIAGLGLGLCYVTAVVSIAYWFDKKRTLAVGLGACGTGIGTFLYAPMTTYFIEEYGWR 456
Query: 318 GTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGA--SSCGSVSYRTESDMPD 375
GT LLL+GTFFN+ VCG +MRDPEWW LEQ K+ K S C S + P
Sbjct: 457 GTCLLLAGTFFNMIVCGTVMRDPEWWILEQEKQNGATPKKSTTKSECDRSSISPADEFPG 516
Query: 376 IEVLKEMLESGVTPDF-IETSVATELNAETC----KFSSVINIPTYIRNNEKQDVHKSSD 430
+E L+ ML+SG TP++ ++ AT +T +F SV+N+PT++++NEK V
Sbjct: 517 VEELRRMLKSGHTPEYLLQILSATTDGPQTANGDIRFRSVVNLPTFVKHNEKVPVEVLES 576
Query: 431 PFTTPENPK-----YPE----PNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKP- 480
+ P K YP + + L+DS T + + T+S +A +
Sbjct: 577 LSSNPRLYKVILENYPNLLSCRSYSDKMLQDS-TGEVGNKSRVTMSMRIKQAPDESKHDN 635
Query: 481 --------------LVKNH------SVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQ 520
+KNH ES+ + LV + S KS S + +Q
Sbjct: 636 SYATNNVHSGAACNTIKNHITKRISKKESEEANPLLVKELEYTMSEGRKSKS----ISKQ 691
Query: 521 H---------RSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGG----HRFQDF 567
R+DS PWLRRQF+ TH+ K ++VHR ++ G H+++
Sbjct: 692 RIADLSCGVVRTDSLPWLRRQFNTN---THHFKDIRVHRN---SVMYRGAALNLHKYRLR 745
Query: 568 LHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILI 627
S + R++ L +++ W ++ + L G
Sbjct: 746 ASSCPDIYRNSMTTL-----------AKENEEKWYSELVDL------LKGM--------- 779
Query: 628 AVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN 687
MD F + L FL S+STILLFTWF++PYFYL + +T
Sbjct: 780 -----------MD---------FSMFLELHFLFL--SLSTILLFTWFIVPYFYLAEHLTR 817
Query: 688 QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFAT 747
+ +A ++LS IG+TNT+GM+ LGWA DQPW+NV KTY CL+ CGV+T LM
Sbjct: 818 NSYIESDAANLLSIIGITNTIGMIGLGWAGDQPWMNVSKTYTWCLVACGVATILMSTLTP 877
Query: 748 NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
Y L+ T +FG+FFAS+FS TP+ILVEL+PL+RF TAYGL+LL QGIGNL+GPPLA
Sbjct: 878 YYNLLMVTSAAFGLFFASSFSFTPVILVELIPLERFTTAYGLSLLCQGIGNLLGPPLA 935
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340717005|ref|XP_003396980.1| PREDICTED: hypothetical protein LOC100645876 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 310/717 (43%), Positives = 411/717 (57%), Gaps = 107/717 (14%)
Query: 138 DSEDEEEGNTREEEDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASK 197
DS E+E + E K+PDGGWGW+VVLA+ I+M DG++FSFGLLYIEFL EFGASK
Sbjct: 277 DSTLEDELANKGERKPKVPDGGWGWVVVLASLVISMIADGVSFSFGLLYIEFLKEFGASK 336
Query: 198 SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLT 257
SKTAWIGSLFMAVPLL GP+ SA V+++GCRSMTIV G+ISG+GFVLS FS +IE MYLT
Sbjct: 337 SKTAWIGSLFMAVPLLSGPIMSALVDRYGCRSMTIVGGLISGIGFVLSSFSNSIEVMYLT 396
Query: 258 FGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWR 317
FG++AG+GL L YVTAVVSIA+WF+KKR LA LG+ GTG GT +YAP+T+Y I EYGWR
Sbjct: 397 FGVIAGLGLGLCYVTAVVSIAYWFDKKRTLAVGLGACGTGIGTFLYAPMTTYFIEEYGWR 456
Query: 318 GTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGA--SSCGSVSYRTESDMPD 375
GT LLL+GTFFN+ VCG +MRDPEWW LEQ K+ K S S + P
Sbjct: 457 GTCLLLAGTFFNMIVCGTVMRDPEWWILEQEKQNGATPKKSTTKSEYDRSSVSPADEFPG 516
Query: 376 IEVLKEMLESGVTPDFI-----ETSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSD 430
IE L+ ML+SG TP+++ T+ ++ +F SV+N+PT++++NEK V
Sbjct: 517 IEELRRMLKSGHTPEYLLQLLSATTEGSQTANGDIRFRSVVNLPTFVKHNEKVPVEVLES 576
Query: 431 PFTTPENPK-----YPE------------PNRTAAELEDSFTAPKLRQLQKTLSAEADRA 473
+ P K YP + T S +R Q ++ D +
Sbjct: 577 LSSNPRLYKVILENYPNLLSCRSYSDKMLQDSTGEVGNKSVVTMSMRIKQAPDESKHDNS 636
Query: 474 SEPRGK------PLVKNH------SVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQH 521
+KNH ES+ + L+ + S KS S + +Q
Sbjct: 637 HTTNNVHSGSACNTIKNHITKKISKKESEEANPLLIKELEYTMSEGRKSKS----ISKQR 692
Query: 522 ---------RSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGG----HRFQDFL 568
R+DS PWLRRQF+ TH+ K ++VHR ++ G H+++
Sbjct: 693 IADLSCGVVRTDSLPWLRRQFNTN---THHFKDIRVHRN---SVMYRGAALNLHKYRLRA 746
Query: 569 HSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIA 628
S + R++ L +++ W ++ + L G
Sbjct: 747 SSCPDIYRNSMTTL-----------AKENEEKWYSELVDL------LKGM---------- 779
Query: 629 VIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQ 688
MD F + L FL S+STILLFTWF++PYFYL + +T
Sbjct: 780 ----------MD---------FSMFLELHFLFL--SLSTILLFTWFIVPYFYLAEHLTRN 818
Query: 689 GLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATN 748
+ +A ++LS IG+TNT+GM+ LGWA DQPW+NV KTY CL+ CGV+T LM
Sbjct: 819 SYIESDAANLLSIIGITNTIGMIGLGWAGDQPWMNVSKTYTWCLVACGVATILMSTLTPY 878
Query: 749 YWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
Y L+ T +FG+FFAS+FS TP+ILVEL+PL+RF TAYGL+LL QGIGNL+GPPLA
Sbjct: 879 YNLLMVTSAAFGLFFASSFSFTPVILVELIPLERFTTAYGLSLLCQGIGNLLGPPLA 935
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307206277|gb|EFN84342.1| Monocarboxylate transporter 14 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 322/706 (45%), Positives = 421/706 (59%), Gaps = 110/706 (15%)
Query: 148 REEEDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLF 207
+E + K+PDGGWGWMVVLA+ I+M DGI+FSFGLLYIEFL+EFGASK+KTAWIGSLF
Sbjct: 158 KERKKPKVPDGGWGWMVVLASLVISMIADGISFSFGLLYIEFLHEFGASKAKTAWIGSLF 217
Query: 208 MAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLA 267
MAVPLL GP+ SA V+++GCR MTI G+ISG+GF+LS F +I MYLTFG++AG+GL
Sbjct: 218 MAVPLLSGPIMSALVDRYGCRKMTIAGGLISGLGFILSSFGNSIVIMYLTFGVIAGLGLG 277
Query: 268 LSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTF 327
L YVTAVVSIA+WF+KKR LA LG+ GTG GT VYAP+T+Y I EYGWRGT LLL+GTF
Sbjct: 278 LCYVTAVVSIAYWFDKKRTLAVGLGACGTGIGTFVYAPMTTYFIEEYGWRGTCLLLAGTF 337
Query: 328 FNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPD----IEVLKEML 383
FN+ V GA+MRDPEWW LEQ K++ K S C S ++E PD ++ L+ +L
Sbjct: 338 FNMIVAGAVMRDPEWWILEQRKQEQAAPKK--SHCRSDDTKSEVSPPDEFPGVDELRRLL 395
Query: 384 ESGVTPD-FIETSVATELNAETCK----FSSVINIPTYIRNNEKQDVHK-----SSDPFT 433
S P+ F+++ T + K F SV+N+PT+I+ +EK + S+
Sbjct: 396 RSEHVPEYFVQSLTTTAATVDGTKGKASFRSVVNLPTFIKRSEKVPLEALELLLSNSRLY 455
Query: 434 TPENPKYPE----PNRTAAELEDS------------------FTAPK--LRQLQKTLSAE 469
T YP + + +L DS T PK + Q + + S+
Sbjct: 456 TVILENYPSLLLCRSSSDKQLHDSTGEIPAKSGITMSMRLKRATEPKVIIEQSKDSRSSP 515
Query: 470 ADRASEPRGK---------PLVKNHSVE-SDGPHEPLVSAGKGNDSNRCKSMSPPGNLGR 519
++ P GK PL+ S + + GP E SA K N N G
Sbjct: 516 PQVSTRPSGKSRKDSEENDPLIAKESAQMTAGPVEKSKSALKRNIVND----------GG 565
Query: 520 QHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTN 579
R+DS PWLRRQFS THY K ++V HR
Sbjct: 566 VVRTDSLPWLRRQFSTN---THYFKDIRV-------------HRNS-------------- 595
Query: 580 LGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWM 639
++ G +L+ + Y + I + +I + E W
Sbjct: 596 ---VMYRGAVLN----------------LRKYRLKASSCPDIYTNSMITLAKENEQ-KWY 635
Query: 640 DDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSIL 699
D+ +L+ GM DFSMFLELHFLL+S+STILLFTWF++PYFYL + +T G S+ +A ++L
Sbjct: 636 DELVDLLKGMMDFSMFLELHFLLLSLSTILLFTWFIVPYFYLAEHLTRNGYSESDAANLL 695
Query: 700 SYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSF 759
S IG+TNT+GM+ LGWA DQ W+NV KTY CLI CG +T LM F +Y L+ + +F
Sbjct: 696 SIIGITNTIGMIGLGWAGDQSWMNVSKTYTWCLIACGAATILMSFFTYHYTFLVASTAAF 755
Query: 760 GIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
G+FFASNFS TP+ILV+L+PL+RF TAYGLTLL QGIGNL+GPPLA
Sbjct: 756 GLFFASNFSFTPVILVQLIPLERFTTAYGLTLLCQGIGNLLGPPLA 801
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380018450|ref|XP_003693141.1| PREDICTED: uncharacterized protein LOC100864907 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 322/827 (38%), Positives = 449/827 (54%), Gaps = 146/827 (17%)
Query: 45 DEVRGDIDGPKRILAVLVPLTAYINNRTPSHVYTPPEGTISNGVSI-------TTLEDLG 97
D++ ID +L P T +R P+ PP IS ++I + G
Sbjct: 175 DDIEDKID-------LLSPGTDCTEDRIPAT--PPPNYLISPNLTIGHSPRSEDEFKRSG 225
Query: 98 SMTSVQSLKAIENNPVTR-----SLDTVQKSSDTEYEGVKFSGVPDSEDEEEGNTREEED 152
+ + +++E P+ D + S D++ + V ++DE+
Sbjct: 226 GSDNFRRRRSLEGRPIITPNPGYKDDDTRDSIDSDSDLVDELTTSTAKDEKR-------K 278
Query: 153 SKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPL 212
SK+PDGGWGW VVLA+ I+M DG++FSFGLLYIEFL EFGASK KTAWIGSLFMAVPL
Sbjct: 279 SKVPDGGWGWAVVLASLIISMIADGVSFSFGLLYIEFLQEFGASKLKTAWIGSLFMAVPL 338
Query: 213 LLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVT 272
L GP+ SA V+++GCRSMTIV G+ISG GF+LSCFS TIE MYLTFG++AG+GL L YVT
Sbjct: 339 LSGPIMSALVDRYGCRSMTIVGGLISGFGFILSCFSTTIEVMYLTFGVIAGLGLGLCYVT 398
Query: 273 AVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCV 332
AVVSIA+WFEKKR LA L + GTG GT VYAP+T+Y I EYGWRGT LLL+GTFFN+ V
Sbjct: 399 AVVSIAYWFEKKRTLAVGLSACGTGIGTFVYAPMTTYFIEEYGWRGTCLLLAGTFFNMIV 458
Query: 333 CGAIMRDPEWWTLEQNKEKDLKSIKG--ASSCGSVSYRTESDMPDIEVLKEMLESGVTPD 390
CG +MRDPEWW LEQ K+ K S C S + P IE L++ML+SG TP+
Sbjct: 459 CGTVMRDPEWWILEQEKQNGATPKKSITKSECDRSSISPVDEFPGIEELRKMLKSGHTPE 518
Query: 391 FIETSVATELNAET-----CKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPK-----Y 440
++ ++T +F SV+N+PT++R+NEK V + P K Y
Sbjct: 519 YLLQILSTTTEDPQSVDGDVRFRSVVNLPTFVRHNEKVPVEVLESLSSNPRLCKVILENY 578
Query: 441 PEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKP------------------LV 482
P + + K++ + R + R +P +
Sbjct: 579 PNLLSCRSYSDKMLQDSNSEVGNKSIVTMSMRIKQARDEPKHDNSHVINNVYSGSACNTI 638
Query: 483 KNH------SVESDGPHEPLVSAGKG-NDSNRCKSMSPPGNLGRQH---------RSDST 526
KNH ES+ + L+ + ++ + KS+S RQH ++DS
Sbjct: 639 KNHIGKKIYKKESEEANPLLIKELEHISEGRKLKSVS------RQHIVELNCGLIKTDSL 692
Query: 527 PWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGG----HRFQDFLHSKLGVRRDTNLGL 582
PWL++QF+ THY K ++VHR ++ G H+++ S + R++ L
Sbjct: 693 PWLKKQFNTN---THYFKDIRVHRN---SVMYRGAALNLHKYRLRASSCPDIYRNSMTTL 746
Query: 583 LVLPGRILDHHLRDSHSCWVFDVTQI----WDYSFYLAGFWIIISGILIAVIPFTENTSW 638
+++ W ++ + D+S +L ++
Sbjct: 747 -----------AKENEEKWYSELIDLLKGMMDFSMFLELHFL------------------ 777
Query: 639 MDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSI 698
FL L +L+ FTWF++PYFYL + +T ++ +A ++
Sbjct: 778 ----------------FLSLSTILL-------FTWFIVPYFYLAEHLTRNSYTESDAANL 814
Query: 699 LSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLS 758
LS IG+TNT+GM+ LGWA DQPW+NV KTY CL+ CGV+T LM F Y L+ T +
Sbjct: 815 LSIIGITNTIGMIGLGWAGDQPWMNVSKTYTWCLVACGVATFLMSTFTPYYNLLMITSAA 874
Query: 759 FGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
FG+FFAS+FS TP+ILV+L+PL+RF TAYGL+LL QGIGNL+GPPLA
Sbjct: 875 FGLFFASSFSFTPVILVQLIPLERFTTAYGLSLLCQGIGNLLGPPLA 921
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110758321|ref|XP_393553.3| PREDICTED: hypothetical protein LOC410067 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 330/826 (39%), Positives = 449/826 (54%), Gaps = 144/826 (17%)
Query: 50 DIDGPKRILAVLVPLTAYINNRTPSHVYTPP--------EGTISNGVSITTLEDLGSMTS 101
DID + +L P T +R P TPP ++ G S T D G
Sbjct: 187 DIDDK---IDLLSPGTDCTEDRIPP---TPPPLDANYLISSNLTIGRSPTNRSDDGFKRR 240
Query: 102 VQ-SLKAIENNPVTRSLDTVQKSSDTEYEGVKFSGVPDSE--DEEEGNTRE-EEDSKIPD 157
++ S +P R + T + E + S DS+ DE ++ + SK+PD
Sbjct: 241 IEGSRDNPRRSPEARPIITPNPGYKEDDEATRDSIDSDSDLVDELTSTAKDGKRKSKVPD 300
Query: 158 GGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPV 217
GGWGW VVLA+ I+M DG++FSFGLLYIEFL EFGASK KTAWIGSLFMAVPLL GP+
Sbjct: 301 GGWGWAVVLASLIISMIADGVSFSFGLLYIEFLQEFGASKLKTAWIGSLFMAVPLLSGPI 360
Query: 218 ASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSI 277
SA V+++GCRSMTIV G+ISG GF+LSCFS TIE MYLTFG++AG+GL L YVTAVVSI
Sbjct: 361 MSALVDRYGCRSMTIVGGLISGFGFILSCFSTTIEVMYLTFGVIAGLGLGLCYVTAVVSI 420
Query: 278 AFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337
A+WFEKKR LA L + GTG GT VYAP+T+Y I EYGWRGT LLL+GTFFN+ VCG +M
Sbjct: 421 AYWFEKKRTLAVGLSACGTGIGTFVYAPMTTYFIEEYGWRGTCLLLAGTFFNMIVCGTVM 480
Query: 338 RDPEWWTLEQNKEKDLKSIKG--ASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETS 395
RDPEWW LEQ K+ K S C S + P IE L++ML+SG TP+++
Sbjct: 481 RDPEWWILEQEKQNGATPRKSITKSECDRASISPVDEFPGIEELRKMLKSGHTPEYLLQI 540
Query: 396 VATELNAETC-----KFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPK-----YPE--- 442
++T +F SV+N+PT++R+NEK V + P K YP
Sbjct: 541 LSTTTEDPQSVDGDIRFRSVVNLPTFVRHNEKVPVEVLESLSSNPRLCKVILENYPNLLS 600
Query: 443 -PNRTAAELED--------SFTAPKLRQLQKTLSAEADRA---------------SEPRG 478
+ + L+D S +R Q ++ D + G
Sbjct: 601 CRSYSDKMLQDSNSEVGNKSIVTMSMRIKQARDESKHDNSHVINNVYSGSACNTIKNHIG 660
Query: 479 KPLVKNHSVESDGPHEPLV--SAGKGNDSNRCKSMSPPGNLGRQH---------RSDSTP 527
K + K S E++ PL+ ++ + KS+S RQH ++DS P
Sbjct: 661 KKIYKKESEEAN----PLLIKELEHISEGRKLKSVS------RQHIVELNCGLIKTDSLP 710
Query: 528 WLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGG----HRFQDFLHSKLGVRRDTNLGLL 583
WL++QF+ THY K ++VHR ++ G H+++ S + R++ L
Sbjct: 711 WLKKQFNTN---THYFKDIRVHRN---SVMYRGAALNLHKYRLRASSCPDIYRNSMTTL- 763
Query: 584 VLPGRILDHHLRDSHSCWVFDVTQI----WDYSFYLAGFWIIISGILIAVIPFTENTSWM 639
+++ W ++ + D+S +L ++
Sbjct: 764 ----------AKENEEKWYSELIDLLKGMMDFSMFLELHFL------------------- 794
Query: 640 DDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSIL 699
FL L +L LFTWF++PYFYL + +T ++ +A ++L
Sbjct: 795 ---------------FLSLSTIL-------LFTWFIVPYFYLAEHLTRNSYTESDAANLL 832
Query: 700 SYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSF 759
S IG+TNT+GM+ LGWA DQPW+NV KTY CL+ CGV+T LM F Y L+ T +F
Sbjct: 833 SIIGITNTIGMIGLGWAGDQPWMNVSKTYTWCLVACGVATFLMSTFTPYYNLLMITSAAF 892
Query: 760 GIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
G+FFAS+FS TP+ILV+L+PL+RF TAYGL+LL QGIGNL+GPPLA
Sbjct: 893 GLFFASSFSFTPVILVQLIPLERFTTAYGLSLLCQGIGNLLGPPLA 938
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | ||||||
| FB|FBgn0033095 | 894 | CG3409 [Drosophila melanogaste | 0.498 | 0.448 | 0.375 | 1.7e-107 | |
| FB|FBgn0023549 | 626 | Mct1 "Monocarboxylate transpor | 0.433 | 0.557 | 0.304 | 2.9e-70 | |
| FB|FBgn0035173 | 816 | CG13907 [Drosophila melanogast | 0.340 | 0.335 | 0.332 | 2.5e-60 | |
| MGI|MGI:1919031 | 512 | Slc16a14 "solute carrier famil | 0.255 | 0.402 | 0.364 | 2.3e-55 | |
| UNIPROTKB|Q7RTX9 | 510 | SLC16A14 "Monocarboxylate tran | 0.226 | 0.356 | 0.384 | 3.6e-55 | |
| UNIPROTKB|E7EMG7 | 489 | SLC16A14 "Monocarboxylate tran | 0.226 | 0.372 | 0.384 | 3.6e-55 | |
| UNIPROTKB|Q6ZWE5 | 485 | SLC16A14 "Monocarboxylate tran | 0.226 | 0.375 | 0.384 | 3.6e-55 | |
| RGD|1309675 | 436 | Slc16a14 "solute carrier famil | 0.229 | 0.424 | 0.379 | 3.8e-55 | |
| UNIPROTKB|F1MKS0 | 512 | SLC16A14 "Uncharacterized prot | 0.226 | 0.355 | 0.384 | 4.7e-54 | |
| UNIPROTKB|E1C1Q8 | 511 | SLC16A14 "Uncharacterized prot | 0.283 | 0.446 | 0.343 | 6.2e-52 |
| FB|FBgn0033095 CG3409 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 159/424 (37%), Positives = 230/424 (54%)
Query: 154 KIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLL 213
K+PDGG+GW+VV A+ +++ DG++FSFGL+ +E L FG S SKTAWI SLF +VPLL
Sbjct: 131 KMPDGGYGWVVVFASLVVSLIADGLSFSFGLINVELLEYFGESTSKTAWISSLFFSVPLL 190
Query: 214 LGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTA 273
+GP+ S V+K+GCR MTI+ G++S GF LS F +IE + +TFG+++G+GL + YVTA
Sbjct: 191 MGPIWSNLVDKYGCRKMTILGGVVSAFGFALSSFCNSIEMLMVTFGIISGLGLGIGYVTA 250
Query: 274 VVSIAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333
VVSIAFWF+KKR A + VYA +TSYLI YGWRG L+L GT N CVC
Sbjct: 251 VVSIAFWFDKKRTFATGIGASGTGIGTFVYARLTSYLIESYGWRGATLILGGTMLNACVC 310
Query: 334 GAIMRDPEWWTLEQNK-EKDLKSIKGASSCGSVSYRTESDMPDIEVLKE-MLESGVTPDF 391
GA+MRDP+W +E+N+ E +S+ S+ SV + D + KE +L+S VT +
Sbjct: 311 GALMRDPDW-LIEENRLESRSQSVTTFSN-SSVCLEEIKKLLDTGITKEAVLDSLVTKNN 368
Query: 392 IETS--VATELNAETCKFSSVINIPTYIRNNEKQDVHK----SSDPFTTPENPKYPEPNR 445
E + + L++ ++ S I +PT++ E + + S E + P
Sbjct: 369 TEANQQIDDPLDSALKRYRSEIFLPTFLSTQELDSICEVKSLSRRSLRHKEGEEAPSREN 428
Query: 446 TAAELEDSFTAPKLRQL----QKTLSAE-ADRASEPRGKPLVKNHSVESDGPHEPLVSAG 500
+ + P + TL A A+E K + S+E+ P E +
Sbjct: 429 LLSMSSGAGAYPPSTAVIGSPDDTLMGGIAHEAAEEAKKAYLA--SIETLSPSEKRSTGR 486
Query: 501 KGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVH--RYLWVQILV 558
N S R S G L ++H S S L + T + +LKV+ R+ V IL
Sbjct: 487 TPNGSLRS---SDEGYLTQKHAS-SRYSLNENIFMAKHTTPSISNLKVNGLRHNSVDILS 542
Query: 559 NGGH 562
H
Sbjct: 543 EDMH 546
|
|
| FB|FBgn0023549 Mct1 "Monocarboxylate transporter 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 112/368 (30%), Positives = 175/368 (47%)
Query: 156 PDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLG 215
PDGGWGW+VV +F I++ DG+ +SFG+ Y EFL+ F K TAWI S+ + V G
Sbjct: 29 PDGGWGWVVVFGSFMIHIVTDGMTYSFGIFYNEFLDYFNEGKGYTAWIASIMVGVTFSSG 88
Query: 216 PVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV 275
P++S+FV ++GCR++TI I++ ++S F++ + + +T G G+G L Y+ A+V
Sbjct: 89 PISSSFVNRYGCRAVTIAGSILAASCIIVSMFAQNVLTLIITIGFGTGLGFGLIYLPAIV 148
Query: 276 SIAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335
S+ +FE KR LA + V+AP+T +LI YGWRG +L++ G N + GA
Sbjct: 149 SVTQYFEAKRSLATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGAMLIIGGIVLNCIIFGA 208
Query: 336 IMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVT--PDFIE 393
+ R E Q + K A + T + ++E LK + + P +
Sbjct: 209 MFRPLELEAPPQTPPNTPSTPKLAKKSAIIDQNTTA--AELEPLKVLPKDQYLQLPQRTD 266
Query: 394 TSVATELNAETCKFSSV-INIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELED 452
T+V+ C+ +SV N+ + NN V+ TP P +
Sbjct: 267 TAVS---GGALCRSNSVGHNLKPNLNNNSNGAVNGQGPTLVTP-------PQAVVKSTSN 316
Query: 453 SFTAPKLR-QLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSM 511
A K QLQ T +A R G + + ++ H ND +R SM
Sbjct: 317 DDIARKCHSQLQLTPLRDAHRERSASGT-MYRPDALYQGSLHNLPDYVSSRNDLSR--SM 373
Query: 512 SPPGNLGR 519
S G + R
Sbjct: 374 SGSGVIKR 381
|
|
| FB|FBgn0035173 CG13907 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 2.5e-60, Sum P(2) = 2.5e-60
Identities = 97/292 (33%), Positives = 155/292 (53%)
Query: 156 PDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLG 215
PDGG+GW++ A+F NM DGIA++FG+ EF+ F K AW+GSL V L G
Sbjct: 72 PDGGYGWVICFASFMCNMIVDGIAYTFGIFLEEFVAYFHEGKGTVAWVGSLLSGVYLSAG 131
Query: 216 PVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV 275
P+ SA K+GCR++ I II+ + FVLS FS + + T+G + G G + Y+ AVV
Sbjct: 132 PIVSALANKYGCRAVCIAGSIIACIAFVLSTFSTNVSMLMATYGFMGGFGFGMIYLPAVV 191
Query: 276 SIAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335
++ ++FE KR LA + +AP+ +YL+ EYGW+ +L+ +G N + GA
Sbjct: 192 AVGYYFETKRSLATGIAVCGSGFGTFAFAPLATYLLEEYGWKNALLIFAGLILNCAIFGA 251
Query: 336 IMRDPEWWTLEQNK--------EKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGV 387
+MR + ++ K EK L+ +G S GS + + +PD ++ L+ +
Sbjct: 252 MMRPLTYPKKKKQKPLMQRMYEEKQLQLERG-SFAGS-HFMVQ--LPD-GTIERKLKMPL 306
Query: 388 TPD-FIETSVATELNAETCK---FSSVINIPTYIRNNEKQDVHKSSDPFTTP 435
D + +S+ EL A+ V +PT I ++ DVH+ + + P
Sbjct: 307 NADPGVHSSLNLELLAQQAGGGGLHPVSTLPT-ITESKVVDVHRQNGAQSPP 357
|
|
| MGI|MGI:1919031 Slc16a14 "solute carrier family 16 (monocarboxylic acid transporters), member 14" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 2.3e-55, Sum P(2) = 2.3e-55
Identities = 79/217 (36%), Positives = 125/217 (57%)
Query: 157 DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGP 216
DGGW WM+VL++FF+++ G + G+L +E+L EF S+ TAW+ SL M + L++GP
Sbjct: 31 DGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRGLTAWVSSLSMGITLIVGP 90
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
F+ GCR I+ G+++ +G+VLS ++ ++ +++TFG+ AG+G ++Y+ AVV
Sbjct: 91 FIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVQSLFITFGVAAGLGSGMAYLPAVVM 150
Query: 277 IAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+ +F+K+R LA L + + YL +EYGWR + + NLCVCGA+
Sbjct: 151 VGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMFIQGALSLNLCVCGAL 210
Query: 337 MR--DPEWWTLEQNKEKDLKSIKGASSCGSVSYRTES 371
MR PE LE E + C +Y TES
Sbjct: 211 MRPLSPE--KLENCPEAE-------EPCALPAYSTES 238
|
|
| UNIPROTKB|Q7RTX9 SLC16A14 "Monocarboxylate transporter 14" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 3.6e-55, Sum P(2) = 3.6e-55
Identities = 70/182 (38%), Positives = 114/182 (62%)
Query: 157 DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGP 216
DGGW WM+VL++FF+++ G + G+L +E+L EF S+ TAW+ SL M + L++GP
Sbjct: 29 DGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRGLTAWVSSLSMGITLIVGP 88
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
F+ GCR I+ G+++ +G+VLS ++ + ++++TFG+ AG+G ++Y+ AVV
Sbjct: 89 FIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVHYLFITFGVAAGLGSGMAYLPAVVM 148
Query: 277 IAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+ +F+K+R LA L + + YL +EYGWR +L+ NLCVCGA+
Sbjct: 149 VGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAVSLNLCVCGAL 208
Query: 337 MR 338
MR
Sbjct: 209 MR 210
|
|
| UNIPROTKB|E7EMG7 SLC16A14 "Monocarboxylate transporter 14" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 3.6e-55, Sum P(2) = 3.6e-55
Identities = 70/182 (38%), Positives = 114/182 (62%)
Query: 157 DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGP 216
DGGW WM+VL++FF+++ G + G+L +E+L EF S+ TAW+ SL M + L++GP
Sbjct: 29 DGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRGLTAWVSSLSMGITLIVGP 88
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
F+ GCR I+ G+++ +G+VLS ++ + ++++TFG+ AG+G ++Y+ AVV
Sbjct: 89 FIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVHYLFITFGVAAGLGSGMAYLPAVVM 148
Query: 277 IAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+ +F+K+R LA L + + YL +EYGWR +L+ NLCVCGA+
Sbjct: 149 VGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAVSLNLCVCGAL 208
Query: 337 MR 338
MR
Sbjct: 209 MR 210
|
|
| UNIPROTKB|Q6ZWE5 SLC16A14 "Monocarboxylate transporter 14" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 3.6e-55, Sum P(2) = 3.6e-55
Identities = 70/182 (38%), Positives = 114/182 (62%)
Query: 157 DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGP 216
DGGW WM+VL++FF+++ G + G+L +E+L EF S+ TAW+ SL M + L++GP
Sbjct: 29 DGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRGLTAWVSSLSMGITLIVGP 88
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
F+ GCR I+ G+++ +G+VLS ++ + ++++TFG+ AG+G ++Y+ AVV
Sbjct: 89 FIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVHYLFITFGVAAGLGSGMAYLPAVVM 148
Query: 277 IAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+ +F+K+R LA L + + YL +EYGWR +L+ NLCVCGA+
Sbjct: 149 VGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAVSLNLCVCGAL 208
Query: 337 MR 338
MR
Sbjct: 209 MR 210
|
|
| RGD|1309675 Slc16a14 "solute carrier family 16, member 14 (monocarboxylic acid transporter 14)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 3.8e-55, Sum P(2) = 3.8e-55
Identities = 71/187 (37%), Positives = 115/187 (61%)
Query: 157 DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGP 216
DGGW WM+VL++FF+++ G + G+L +E+L EF S+ TAW+ SL M + L++GP
Sbjct: 31 DGGWAWMMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRGLTAWVSSLSMGITLIVGP 90
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
F+ GCR I+ G+++ +G+VLS ++ ++ +++TFG+ AG+G ++Y+ AVV
Sbjct: 91 FIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAANVQSLFITFGVAAGLGSGMAYLPAVVM 150
Query: 277 IAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+ +F+K+R LA L + + YL +EYGWR + + NLCVCGA+
Sbjct: 151 VGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMFIQGALSLNLCVCGAL 210
Query: 337 MR--DPE 341
MR PE
Sbjct: 211 MRPLSPE 217
|
|
| UNIPROTKB|F1MKS0 SLC16A14 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 4.7e-54, Sum P(2) = 4.7e-54
Identities = 70/182 (38%), Positives = 112/182 (61%)
Query: 157 DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGP 216
DGGW W++VL++FF+++ G + G+L +E+L EF S+ TAW+ SL M V L++GP
Sbjct: 29 DGGWAWVMVLSSFFVHILIMGSQMALGVLNVEWLEEFHQSRGLTAWVSSLSMGVTLIVGP 88
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
F+ GCR I+ G+++ +G+VLS ++ + ++++TFGL AG G ++Y+ AVV
Sbjct: 89 FIGLFINTCGCRRTAIIGGLLNSLGWVLSAYAVNVYYLFITFGLAAGFGSGMAYLPAVVM 148
Query: 277 IAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+ +F+K+R LA L + + YL +EYGWR + + NLCVCGA+
Sbjct: 149 VGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMFIQGAVSLNLCVCGAL 208
Query: 337 MR 338
MR
Sbjct: 209 MR 210
|
|
| UNIPROTKB|E1C1Q8 SLC16A14 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 6.2e-52, Sum P(2) = 6.2e-52
Identities = 80/233 (34%), Positives = 129/233 (55%)
Query: 157 DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGP 216
DGGW WM+V ++F +++ G + G+L +E+L EF S+ TAW+ SL M + L++GP
Sbjct: 30 DGGWAWMIVFSSFLVHILIMGSQMALGILNMEWLEEFNQSRGLTAWVSSLSMGITLIVGP 89
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
F+ GCR I+ GI++ +G++LS ++ + +++LTFG+ AGIG + Y+ AVV
Sbjct: 90 FIGLFITMCGCRKTAIIGGILNALGWILSAYASNVHYLFLTFGVTAGIGSGMVYLPAVVM 149
Query: 277 IAFWFEKKRGLACSLXXXXXXXXXXVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+ +F K+R LA L + + YL E+GWR + + NLCVCGA+
Sbjct: 150 VGQYFHKRRALAQGLSTTGTGFGAFLMTALLKYLCREFGWRNAMFIQGAICLNLCVCGAL 209
Query: 337 MRDPEWWTLEQNKEKDLKSIKGAS-SCGSV-SYRTESDMPDI-EVLK--EMLE 384
MR L + + K S S ++ S S+ P+ EV+K E+L+
Sbjct: 210 MRPLSPKVLNEKSNSEDNQAKALSHSAETIKSNGVLSEEPEKKEVIKNEEVLD 262
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 805 | |||
| TIGR00892 | 455 | TIGR00892, 2A0113, monocarboxylate transporter 1 | 2e-46 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-23 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-20 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 9e-18 | |
| TIGR00892 | 455 | TIGR00892, 2A0113, monocarboxylate transporter 1 | 2e-16 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-12 | |
| TIGR04259 | 405 | TIGR04259, oxa_formateAnti, oxalate/formate antipo | 2e-12 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-11 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-10 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-07 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 2e-07 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 7e-07 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-06 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 9e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-05 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-05 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 4e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-04 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 3e-04 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 0.002 | |
| TIGR00896 | 355 | TIGR00896, CynX, cyanate transporter | 0.003 |
| >gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 2e-46
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 8/189 (4%)
Query: 156 PDGGWGWMVVLAAFFINMAGDGIAFSF----GLLYIEFLNEFGASKSKTAWIGSLFMAVP 211
PDGGWGW+V+ A F G +++F + + E F A+ S+TAWI S+ +AV
Sbjct: 12 PDGGWGWVVLGATFVSI----GFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVL 67
Query: 212 LLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYV 271
GP++S V +FGCR + I G+++ +G +L+ FS + +YLT G + G+GLA ++
Sbjct: 68 YAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQ 127
Query: 272 TAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLC 331
++ + +F ++R LA L G+ + AP+ YL +GWRG+ L+L G + C
Sbjct: 128 PSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCC 187
Query: 332 VCGAIMRDP 340
VCGA+MR
Sbjct: 188 VCGALMRPV 196
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 455 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 5/178 (2%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+++ FF++ G+ + G S S+ I S F L +A
Sbjct: 1 LLLLFLGFFLSGLDRGL---LSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYL 57
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF 281
++FG R + ++ ++ +G +L F+ ++ + L L G+G Y A IA WF
Sbjct: 58 SDRFGRRRVLLLGLLLFALGSLLLAFASSLW-LLLVGRFLLGLGGGALYPAAAALIAEWF 116
Query: 282 -EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMR 338
K+RG A L S G G G + + L GWR L+L+ L + +
Sbjct: 117 PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 4e-20
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 4/173 (2%)
Query: 165 VLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK 224
+ A F+ G + LY+ + G S ++ + + F L P+A ++
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYL--AEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR 58
Query: 225 FGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF-EK 283
FG R + ++ ++ +G +L F+ ++ + L +L G+G + A IA WF +
Sbjct: 59 FGRRRVLLIGLLLFALGLLLLLFASSLW-LLLVLRVLQGLGGGALFPAAAALIADWFPPE 117
Query: 284 KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336
+RG A L S G G G + + L S +GWR L+L+ V A+
Sbjct: 118 ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170
|
Length = 346 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 9e-18
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
W VL I G +++ LL FG + A +L + + PV
Sbjct: 2 WWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLL 61
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF 281
+KFG R++ ++ GI+ G+GF + ++ +YLT+GL A G+ ++Y A+ + WF
Sbjct: 62 ADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGL-ASAGVGIAYGIALNTAVKWF 120
Query: 282 EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI----- 336
KRGLA + G G G+ + +P+ + +I+ G + + F + V GA
Sbjct: 121 PDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP 180
Query: 337 ---------------------MRDPEWWTL 345
+R P++W L
Sbjct: 181 PGQLIKTNIEVSVKDYTVWEMLRTPQFWVL 210
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-16
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 651 DFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGM 710
DFS+F FL+ +++F F P +L + ++G+ + EA +LS IG +
Sbjct: 234 DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFAR 293
Query: 711 VALGWACDQPWL--NVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFS 768
+ G W+ +V+ ++ L+ G++ L L A +Y L+ C+ FG+ F S +
Sbjct: 294 PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-AGDYTGLVIYCIFFGLSFGSVGA 352
Query: 769 CTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
+L++LV RF++A GL + + L+GPPLA
Sbjct: 353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA 389
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 455 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 29/198 (14%)
Query: 609 WDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTI 668
W + F + ++ +L+ + LL++++
Sbjct: 152 WRWLFLILAILGLLLALLLLFLLRL--------------------------LLLLALAFF 185
Query: 669 LL-FTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKT 727
LL F ++ + + GLS EA +LS G+ +G + G D +
Sbjct: 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD-RLGRRRLL 244
Query: 728 YAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAY 787
L+ + L+ L + L+ L G F + EL P + TA
Sbjct: 245 LLIGLLLAALGLLLLALAPSLALLLVALLL-LGFGLGFAFPALLTLASELAPPEARGTAS 303
Query: 788 GLTLLAQGIGNLVGPPLA 805
GL +G +GP LA
Sbjct: 304 GLFNTFGSLGGALGPLLA 321
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 3/146 (2%)
Query: 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
LL+ + L + L + GLS +A I+S + +G + G+ D+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 720 PWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVP 779
++ L+ + + L+ FA++ W LL G+ + + ++ E P
Sbjct: 61 --FGRRRVLLLGLLLFALGSLLLA-FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP 117
Query: 780 LDRFATAYGLTLLAQGIGNLVGPPLA 805
A GL G+G L+GP L
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLG 143
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 2/160 (1%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+V+ + M + + + L G ++ +LF+ L P+ F
Sbjct: 3 LQLVIGVVCMCMIA-NLQYGWTLFVNPIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWF 61
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF 281
V+K+G R + + GI+ G+G+VL+ ++ ++ +Y ++AGIG Y T V + WF
Sbjct: 62 VDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAA-VVAGIGAGAVYGTCVGNALKWF 120
Query: 282 EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVL 321
KRGLA L + G G G + + +I G++ +
Sbjct: 121 PDKRGLAAGLTAAGFGAGAALTVVPIAAMIKVSGYQAAFM 160
|
This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 7/199 (3%)
Query: 609 WDYSFYLAGFWIIISGILIAV-IPFTENTSWMDDARELIVGMFD--FSMFLELHFLLVSI 665
W +F + +++ +L A+ +P S E + + L L + +
Sbjct: 150 WRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL 209
Query: 666 STILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVK 725
+ +L F YL + GLS A +L G+ +G + LG D L +
Sbjct: 210 ALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSD--RLGRR 267
Query: 726 KTYAACLIGCGVSTALMPLFA--TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRF 783
+ L+ ++ + L + + LL L G F ++ +L P +
Sbjct: 268 RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEER 327
Query: 784 ATAYGLTLLAQGIGNLVGP 802
TA GL A +G +GP
Sbjct: 328 GTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 8e-11
Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 4/172 (2%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVA 218
+ ++L + +L E G S ++ + SLF +L +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 219 SAFVEKFGCRSMTIVAG-IISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSI 277
++ G R + ++ G +++ +G +L + ++ + L LL G GL ++ +
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL-ALLLVALLLLGFGLGFAFPALLTLA 290
Query: 278 A-FWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFF 328
+ + RG A L +T G + + L+ G+ G L+L+
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 3/144 (2%)
Query: 662 LVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPW 721
L + + ++ + G+S E +L+ + + G D+
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR-- 58
Query: 722 LNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD 781
++ L+ + L+ LFA++ W LL + G+ + F ++ + P +
Sbjct: 59 FGRRRVLLIGLLLFALGL-LLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPE 117
Query: 782 RFATAYGLTLLAQGIGNLVGPPLA 805
A GL G+G +GP L
Sbjct: 118 ERGRALGLLSAGFGLGAALGPLLG 141
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 27/208 (12%)
Query: 161 GWMVVLAAFFINMAGDG-----IAFSFGLLYIEFLNEFGASKSKTAWIGS--LFMAVP-- 211
W ++ +F I M DG + F+ + E+G + ++ S L
Sbjct: 15 QWRAIILSFLI-MLMDGYDLAAMGFAAPAI----SAEWGLDPVQLGFLFSAGLIGMAFGA 69
Query: 212 LLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGL--ALS 269
L GP+A ++ G R + + + ++ V +L + + + L LAG+GL +
Sbjct: 70 LFFGPLA----DRIGRRRVLLWSILLFSVFTLLCALATNVTQL-LILRFLAGLGLGGLMP 124
Query: 270 YVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFN 329
+ A+VS + ++ RG A L G G V + +LI +GWR L G
Sbjct: 125 NLNALVS-EYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR--SLFYVGGIAP 181
Query: 330 LCVCGAIMR---DPEWWTLEQNKEKDLK 354
L + +MR + + + + E +
Sbjct: 182 LLLLLLLMRFLPESIDFLVSKRPETVRR 209
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 205 SLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI 264
+ + L+ P++ ++FG + + +V I + + S I + + L G
Sbjct: 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIAR-FLQGF 63
Query: 265 GLALSYVTAVVSIAFWF-EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLL 323
G A + V IA + ++RG+A L S G G + P+ L GWR L L
Sbjct: 64 GAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123
Query: 324 S 324
+
Sbjct: 124 A 124
|
Length = 141 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 689 GLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATN 748
GLS + + S VG GW D+ +KT A ++ GV T L FA
Sbjct: 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR--FGARKTLAVFIVIWGVFTGLQA-FAGA 81
Query: 749 YWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
Y +L + G A F +I+ P ATA + AQG+G ++G PL
Sbjct: 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV 138
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 52.0 bits (123), Expect = 7e-07
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+ LAA + + ++ + LL G + S F + +A
Sbjct: 5 LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPL 62
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG-LLAGIGLALSYVTAVVSIAFW 280
+++G R + I+ ++ +G +L + + L LL G+G A ++ W
Sbjct: 63 GDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEW 122
Query: 281 F--EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318
F +RGLA L + G G P+ + L+ G
Sbjct: 123 FPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG 162
|
Length = 338 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 25/217 (11%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLY-IEFLNEFGASKSKTA---------WIGSLFMA 209
+ L F + G L I+F FGA S A I S+F
Sbjct: 1 LALVAALGGF---LFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSV 57
Query: 210 VPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH-MYLTFGLLAGIGLAL 268
L+ A ++FG + ++ ++ +G +L F++ M + ++ G+G+
Sbjct: 58 GCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGG 117
Query: 269 SYVTAVVSIA-FWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY----GWRGTVLLL 323
V + I+ +K RG SL G FG V A I +++Y GWR + L
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGSLYQLGITFGILV-AAIIGLGLNKYSNSDGWR--IPLG 174
Query: 324 SGTFFNLCVCGAIMRDPE--WWTLEQNK-EKDLKSIK 357
+ + ++ PE W + + K E+ +
Sbjct: 175 LQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLA 211
|
Length = 449 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+++L + +N + L Y ++ G + + + + +L P+
Sbjct: 224 LLILLLLYLLNALAMAVRNGLLLYYFTYV--LGNAGL-FSVLLLIGTIAAILGAPLWPWL 280
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH-MYLTFGLLAGIGLALSY------VTAV 274
++FG + ++ +++ +G VL F ++L +LAGIGL L+ + V
Sbjct: 281 AKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADV 340
Query: 275 VSIAFWFEKKR--GLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTV 320
V W KR G+ SL S G + I L++ G+
Sbjct: 341 VDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAFAGYVANA 388
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 13/192 (6%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPL---LLGP 216
++L F+ G G + I E+ K + +G L L
Sbjct: 85 SSLWLLLVGRFLLGLGGGALYPAAAALI---AEWFPPKERGRALGLFSAGFGLGALLGPL 141
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276
+ E G R + ++ I+ + +L F + L LA L+ Y +
Sbjct: 142 LGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL----LLLLALAFFLLSFGYYGLLTY 197
Query: 277 IAFWFEKKRGL---ACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333
+ + ++ GL L + G G + A + L G R +LL+ L +
Sbjct: 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257
Query: 334 GAIMRDPEWWTL 345
+ L
Sbjct: 258 LLALAPSLALLL 269
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 205 SLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI 264
S F LL V ++FG + + +++ +++ V VL+ FS ++L F LL G+
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT-VFLVFRLLVGM 192
Query: 265 GLALSYVTAVVSIAFWFEKK-RGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLL 323
G+ +V AVV + KK R + +L G V P+ +Y I + WR L +
Sbjct: 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG-LVLLPLVAYFIPD--WRWLQLAV 249
Query: 324 SGTFFNLCV-CGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEM 382
S F + + P W + E+ LK ++ + E + + + K++
Sbjct: 250 SLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE--VLSLSLEKDL 307
Query: 383 LESGVTPDFIE 393
S F++
Sbjct: 308 SSSKKQYSFLD 318
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 6/159 (3%)
Query: 168 AFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGC 227
IN D SF ++ + G S ++ ++ S F ++ +++FG
Sbjct: 2 VTVINYL-DRANLSFAAPMLQ--EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGA 58
Query: 228 RSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF-EKKRG 286
R V +I GV L F+ +Y+ LL G A + ++ +A WF +R
Sbjct: 59 RKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLL-GAAEAPFFPGIILIVASWFPASERA 117
Query: 287 LACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSG 325
A S+ ++ G G + P+ +++ + W+ ++ G
Sbjct: 118 TAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ-WAFIIEG 155
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 12/173 (6%)
Query: 136 VPDSEDEEEGNTREEEDSKIPDGGWG------WMVVLAAFFINMAGDGIAFSFGLLYIEF 189
+P E + EE W + +L A + ++ LY E
Sbjct: 172 LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQE- 230
Query: 190 LNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR 249
G S + L + + + ++ G R ++A ++ + +
Sbjct: 231 --VLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLS 288
Query: 250 TIE--HMYLTFGLLAGIGLALSYVTAVVSIA-FWFEKKRGLACSLGSTGTGFG 299
E L LL G G L + ++ +++RG A L +T G
Sbjct: 289 LTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLG 341
|
Length = 346 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 16/170 (9%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAF 221
+ LAAF I GLL + G S+ + + + L P+ +
Sbjct: 16 LALALAAFAIGTTEFVPV---GLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALL 71
Query: 222 VEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI------GLALSYVTAVV 275
+ R + + + V +LS + + + L LAG+ +A + +V
Sbjct: 72 TGRLERRRLLLGLLALFIVSNLLSALAPSFA-VLLLARALAGLAHGVFWSIAAALAARLV 130
Query: 276 SIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSG 325
KRG A +L TG T + P+ ++L +GWR T L ++
Sbjct: 131 P-----PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV 175
|
Length = 394 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVA--- 218
W+ LA F + + F L + ++FG S+ + + A+P+L+G +
Sbjct: 17 WLSTLA-FDVGFM---VWTLFSPLGVFIKSDFGLSEGQKGLLV----AIPILVGALLRLP 68
Query: 219 -SAFVEKFGCRSMTIVAGIIS-----GVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVT 272
++FG R TI++ ++ G+ F ++ L GLL G+ A S+
Sbjct: 69 YGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT---YPSTWQLLVIGLLLGLAGA-SFAV 124
Query: 273 AVVSIAFWFEKKR-GLACSLGSTGTG-FGTTVYAPITSYLISEYGWRG 318
+ + +F+F K++ GLA LG G G G V + + +G+
Sbjct: 125 GMPNASFFFPKEKQGLA--LGIAGAGNLGVAVAQLVAPLVAVAFGFLA 170
|
Length = 417 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 12/146 (8%)
Query: 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIIS 238
F+ + + + + G SK++ +GS F + V ++ R I+S
Sbjct: 47 NFNLAMPAL--IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104
Query: 239 GVGFVLSCFSRTIEHMYLTFGLLA---GIGLALSYVTAVVSIAFWFEKK-RGLACSLGST 294
+ +L FS ++ + + L G+G T I WF +K RG S+ +T
Sbjct: 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART----ITHWFSRKERGTWWSIWNT 160
Query: 295 GTGFGTTVYAPITS--YLISEYGWRG 318
G + + + GWR
Sbjct: 161 SHNIGGALAPLVALLAFFAFHGGWRA 186
|
Length = 448 |
| >gnl|CDD|129974 TIGR00896, CynX, cyanate transporter | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 16/153 (10%)
Query: 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLL----LGPVASAFVEKFGCRSMTIVAGI 236
S G L + + G S S L A+P+L L P+A +FG +
Sbjct: 18 SVGPLLPQIRSALGMSFSVAG----LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLL 73
Query: 237 ISGVGFVLSCFSRTIEHMYLTFG--LLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGST 294
+ G ++ R+ L F L G+G+A+ V I F ++ GL L S
Sbjct: 74 LIAAGILI----RSAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSM 129
Query: 295 GTGFGTTVYAPITSYLI--SEYGWRGTVLLLSG 325
G + A T L S W+ + +
Sbjct: 130 ALMGGAALAAAATVPLAQHSGGHWQQALAWWAL 162
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate [Transport and binding proteins, Other]. Length = 355 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| KOG2504|consensus | 509 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.98 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| KOG0253|consensus | 528 | 99.95 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.94 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.94 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.94 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| KOG2532|consensus | 466 | 99.92 | ||
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.92 | |
| KOG2533|consensus | 495 | 99.91 | ||
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.91 | |
| KOG1330|consensus | 493 | 99.91 | ||
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.91 | |
| KOG0569|consensus | 485 | 99.91 | ||
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.9 | |
| KOG0255|consensus | 521 | 99.89 | ||
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.89 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.89 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.88 | |
| KOG0254|consensus | 513 | 99.88 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.87 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.87 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.87 | |
| KOG3764|consensus | 464 | 99.87 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.86 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.85 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.85 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.84 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.84 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.83 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.83 | |
| KOG2615|consensus | 451 | 99.81 | ||
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.8 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.8 | |
| KOG0252|consensus | 538 | 99.78 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.74 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.73 | |
| KOG4686|consensus | 459 | 99.72 | ||
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.71 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.68 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.68 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.67 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.63 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.63 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.62 | |
| KOG2563|consensus | 480 | 99.58 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.57 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.55 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.45 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.42 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.41 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.39 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.39 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.39 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.38 | |
| KOG3626|consensus | 735 | 99.35 | ||
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.32 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.29 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.29 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.29 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.29 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.24 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.24 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.24 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.24 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.23 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.21 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.2 | |
| KOG2325|consensus | 488 | 99.19 | ||
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.18 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.18 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.17 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.16 | |
| KOG2816|consensus | 463 | 99.15 | ||
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.14 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.14 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.13 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.12 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.11 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.11 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.11 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.1 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.1 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.09 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.06 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.06 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.05 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.04 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.03 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.03 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.99 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.98 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.98 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.94 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.94 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.92 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.92 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.91 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.91 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.89 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.89 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.83 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.81 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.81 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.81 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.8 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.8 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.79 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.79 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.79 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.79 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.79 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.78 | |
| KOG3098|consensus | 461 | 98.77 | ||
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.77 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.77 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.76 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.76 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.75 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.75 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.74 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.74 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.73 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.71 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.71 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.69 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.69 | |
| KOG2504|consensus | 509 | 98.69 | ||
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.67 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.65 | |
| KOG4686|consensus | 459 | 98.64 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.62 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.62 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.62 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.61 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.61 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.61 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.6 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.59 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.56 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.56 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.55 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.54 | |
| KOG1330|consensus | 493 | 98.54 | ||
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.54 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.52 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.51 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.47 | |
| KOG0569|consensus | 485 | 98.45 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.44 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.43 | |
| KOG3764|consensus | 464 | 98.43 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.42 | |
| KOG3762|consensus | 618 | 98.36 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.32 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.3 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.26 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.25 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.25 | |
| KOG2615|consensus | 451 | 98.21 | ||
| KOG0637|consensus | 498 | 98.21 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.18 | |
| KOG2532|consensus | 466 | 98.17 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.16 | |
| KOG4332|consensus | 454 | 98.11 | ||
| KOG0253|consensus | 528 | 98.1 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.1 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.05 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.97 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.96 | |
| KOG3574|consensus | 510 | 97.96 | ||
| KOG0252|consensus | 538 | 97.86 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.8 | |
| KOG0255|consensus | 521 | 97.79 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 97.71 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.7 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.69 | |
| KOG2533|consensus | 495 | 97.68 | ||
| KOG0254|consensus | 513 | 97.66 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.64 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.63 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.59 | |
| KOG1479|consensus | 406 | 97.5 | ||
| KOG3810|consensus | 433 | 97.46 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.39 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.26 | |
| KOG1237|consensus | 571 | 97.24 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.17 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.98 | |
| KOG3762|consensus | 618 | 96.86 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.76 | |
| KOG2325|consensus | 488 | 96.67 | ||
| KOG2816|consensus | 463 | 96.59 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.57 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.52 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.15 | |
| KOG2563|consensus | 480 | 96.12 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.98 | |
| KOG3098|consensus | 461 | 95.52 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.14 | |
| KOG0637|consensus | 498 | 95.14 | ||
| KOG3097|consensus | 390 | 94.95 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 94.67 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.32 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.22 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.16 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.92 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 92.02 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.72 | |
| KOG3880|consensus | 409 | 91.36 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 90.74 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 90.33 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 88.63 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 88.13 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 87.09 |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=320.14 Aligned_cols=407 Identities=40% Similarity=0.783 Sum_probs=331.7
Q ss_pred CCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q psy10046 155 IPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVA 234 (805)
Q Consensus 155 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~ 234 (805)
.|++.|.|.+++++++..+..++..+.++++.+.++++|+.+..+++|+.++....+.+..++.+.+.||+|.|.+.++|
T Consensus 38 ~PdGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G 117 (509)
T KOG2504|consen 38 LPDGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAG 117 (509)
T ss_pred CCCCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc
Q psy10046 235 GIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY 314 (805)
Q Consensus 235 ~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~ 314 (805)
.++.+++.++.+++++++++++.+.++.|+|.|..+.....++..||.|+|+.+.|+...+.++|.++.|++..++.+.+
T Consensus 118 ~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~ 197 (509)
T KOG2504|consen 118 GLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY 197 (509)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhh
Q psy10046 315 GWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIET 394 (805)
Q Consensus 315 gWr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (805)
|||+.+++.+.+.+.+++....++|..+...+. ..++.+. .
T Consensus 198 G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~~~~~~--~------------------------------------ 238 (509)
T KOG2504|consen 198 GWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EEKDLRN--S------------------------------------ 238 (509)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hhhhhcc--c------------------------------------
Confidence 999999999999988888888887754332222 0000000 0
Q ss_pred hhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCC
Q psy10046 395 SVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRAS 474 (805)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (805)
..+.+......
T Consensus 239 ---------------------------~~~~~~~~~~~------------------------------------------ 249 (509)
T KOG2504|consen 239 ---------------------------AASVESTPKPV------------------------------------------ 249 (509)
T ss_pred ---------------------------ccccccccccc------------------------------------------
Confidence 00000000000
Q ss_pred CCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchh
Q psy10046 475 EPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWV 554 (805)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (805)
..+..+++.. +.+ ++.+ +. ...+
T Consensus 250 --~~~~~~~~~~------~~~-------------~~~~---~~-----------------------~~~~---------- 272 (509)
T KOG2504|consen 250 --ELRISERDSG------LKK-------------LSLS---NL-----------------------ATLK---------- 272 (509)
T ss_pred --ccccccCCCC------CCc-------------cccc---ch-----------------------hhhh----------
Confidence 0000000000 000 0000 00 0000
Q ss_pred hhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheecccccccccccc
Q psy10046 555 QILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTE 634 (805)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (805)
..
T Consensus 273 ------------------------------------------------------------------------------~~ 274 (509)
T KOG2504|consen 273 ------------------------------------------------------------------------------RG 274 (509)
T ss_pred ------------------------------------------------------------------------------hC
Confidence 00
Q ss_pred CccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheee
Q psy10046 635 NTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALG 714 (805)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g 714 (805)
+..+...-.+....++++++|+++.|+.+++...++.+++..+.+++|.|..+.|++..+++.++++.++.+++||++.|
T Consensus 275 ~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G 354 (509)
T KOG2504|consen 275 PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILG 354 (509)
T ss_pred CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhh
Confidence 00000000011112566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHH
Q psy10046 715 WACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQ 794 (805)
Q Consensus 715 ~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~ 794 (805)
++.|++...++.+..+++++++++.+.++ ..++++.++.+++++|++.|......+.++.++++.++.+.++|+..+++
T Consensus 355 ~laD~~~~~~~~~~~~~ll~~gl~~~~~p-~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~ 433 (509)
T KOG2504|consen 355 LLADKPGIRALVLFLLTLLIAGLARLFLP-FATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ 433 (509)
T ss_pred hhcCccccchHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence 99999767788888899999999998888 67888999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCC
Q psy10046 795 GIGNLVGPPLA 805 (805)
Q Consensus 795 ~ig~~igp~ia 805 (805)
+++.++||+|+
T Consensus 434 gi~~l~gpPia 444 (509)
T KOG2504|consen 434 GIGALVGPPIA 444 (509)
T ss_pred HHHHHcCcccc
Confidence 99999999985
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=318.49 Aligned_cols=204 Identities=15% Similarity=0.165 Sum_probs=171.1
Q ss_pred CCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q psy10046 155 IPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVA 234 (805)
Q Consensus 155 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~ 234 (805)
.+.+++.|.++++++++.++.......++.++|.+.+++|++..+.+++.+++.++++++.+++|+++||+|||++++++
T Consensus 159 ~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 159 CGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238 (742)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34455678777776666654433335577788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc
Q psy10046 235 GIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE 313 (805)
Q Consensus 235 ~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~ 313 (805)
+++++++.++++++++++.+++ +|++.|++.|+..+...+++.+++| ++||++++++.++..+|.++++.++.++...
T Consensus 239 lil~~i~~ll~afa~s~~~llv-~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~ 317 (742)
T TIGR01299 239 LSVNGFFAFFSSFVQGYGFFLF-CRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH 317 (742)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999866 6999999999999999999999998 7799999999999999999999988777653
Q ss_pred -------------cchHHHHHHHHHHHHHHHHHHH-hccCCchhhhhhchHHHHHhhhcc
Q psy10046 314 -------------YGWRGTVLLLSGTFFNLCVCGA-IMRDPEWWTLEQNKEKDLKSIKGA 359 (805)
Q Consensus 314 -------------~gWr~~f~i~~~~~~~~~i~~~-~~~~p~~~~~~~~~~~~~~~l~~~ 359 (805)
.+||+.|++.++..++.+++.+ +..+|+|+..+++.+++.+.+++.
T Consensus 318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i 377 (742)
T TIGR01299 318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377 (742)
T ss_pred ccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHH
Confidence 3589988887766655544443 345688988888888888877663
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=297.30 Aligned_cols=377 Identities=32% Similarity=0.606 Sum_probs=288.0
Q ss_pred CCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q psy10046 155 IPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVA 234 (805)
Q Consensus 155 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~ 234 (805)
.|++.|+|.+++++++..+..++....++.++|.+.+++|++..+++++.+++.++..++.+++|+++||+|||++++++
T Consensus 11 ~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 90 (455)
T TIGR00892 11 PPDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAG 90 (455)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhh
Confidence 36777899888888887776666667788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc
Q psy10046 235 GIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY 314 (805)
Q Consensus 235 ~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~ 314 (805)
.+++++++++++++++++.+++..|++.|++.+...+....++.++++++|++++++...+..+|.+++|++++++.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 91 GLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988665579999998877667777778899989999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhh
Q psy10046 315 GWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIET 394 (805)
Q Consensus 315 gWr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (805)
|||+.|++.+++.+++.+..++.+++....... .. +
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~---~---------------------------------------- 206 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVS-KS---K---------------------------------------- 206 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccc-cc---c----------------------------------------
Confidence 999999999987776655555543321000000 00 0
Q ss_pred hhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCC
Q psy10046 395 SVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRAS 474 (805)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (805)
..++. +. +....
T Consensus 207 ------------------------~~~~~-----------------~~---------~~~~~------------------ 218 (455)
T TIGR00892 207 ------------------------SKEGL-----------------PP---------DGSTK------------------ 218 (455)
T ss_pred ------------------------ccccC-----------------CC---------CCccc------------------
Confidence 00000 00 00000
Q ss_pred CCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchh
Q psy10046 475 EPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWV 554 (805)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (805)
+. ...
T Consensus 219 ----------------------------------------~~----------------------~~~------------- 223 (455)
T TIGR00892 219 ----------------------------------------KL----------------------SKK------------- 223 (455)
T ss_pred ----------------------------------------cc----------------------ccc-------------
Confidence 00 000
Q ss_pred hhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheecccccccccccc
Q psy10046 555 QILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTE 634 (805)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (805)
T Consensus 224 -------------------------------------------------------------------------------- 223 (455)
T TIGR00892 224 -------------------------------------------------------------------------------- 223 (455)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheee
Q psy10046 635 NTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALG 714 (805)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g 714 (805)
...+...+..++++++++.++.+++..++...++.....++|.|+++.|++..+++++.++.+++.+++++++|
T Consensus 224 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 297 (455)
T TIGR00892 224 ------STAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCG 297 (455)
T ss_pred ------chhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011222356788889888888777777877888899999998999999999999999999999999999
Q ss_pred eecCCCCccchhHHH--HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHH
Q psy10046 715 WACDQPWLNVKKTYA--ACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLL 792 (805)
Q Consensus 715 ~l~dr~~~gr~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~ 792 (805)
++.||.++++++... .+.++.+++++++. ..++.+.+++..+++|++.+...+....++.+.+|++++++++|++++
T Consensus 298 ~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 376 (455)
T TIGR00892 298 LIAGLKWIRPHVQYLFSFALLFNGLTHLLCA-LAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTI 376 (455)
T ss_pred HHhcccccCHHHHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHH
Confidence 999974344343332 23333344444433 345677777788899999998888989999999999999999999999
Q ss_pred HHhhhhccCCCCC
Q psy10046 793 AQGIGNLVGPPLA 805 (805)
Q Consensus 793 ~~~ig~~igp~ia 805 (805)
+..+|+++||+++
T Consensus 377 ~~~lg~~igp~i~ 389 (455)
T TIGR00892 377 VECCAVLIGPPLA 389 (455)
T ss_pred HHHHHHHccccce
Confidence 9999999999864
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-30 Score=298.22 Aligned_cols=398 Identities=14% Similarity=0.155 Sum_probs=293.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
+|..++.+++..++........++.+|.+.+++|.+..+.+|+.+.|.++++++.+++|+++||+|||++++++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46777777777777766667888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHH
Q psy10046 241 GFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF-E-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 241 ~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~-p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
+++++++++|++.+++ +|+++|+|.+...+.....+..++ | ++|+++++++.....+|.++||++++++.++.||||
T Consensus 84 ~~~~~~~a~~~~~li~-~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 84 ASLAAAFSPTASWLIA-TRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHHHcCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 9999999999999966 699999999998888877777554 5 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhc
Q psy10046 319 TVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVAT 398 (805)
Q Consensus 319 ~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (805)
.|++...+.++.+++.+++.+.... +. .++. +.. ...+..
T Consensus 163 ~f~i~~~~~~~~~~l~~~~l~~~~~----~~--------------------~~~~-d~~--g~~~~~------------- 202 (495)
T PRK14995 163 VFLINVPIVLVVMGLTARYVPRQAG----RR--------------------DQPL-NLG--HALMLI------------- 202 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC----CC--------------------CCCC-ChH--hHHHHH-------------
Confidence 9999887776666555554332100 00 0000 000 000000
Q ss_pred cccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCC
Q psy10046 399 ELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRG 478 (805)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (805)
T Consensus 203 -------------------------------------------------------------------------------- 202 (495)
T PRK14995 203 -------------------------------------------------------------------------------- 202 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhh
Q psy10046 479 KPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILV 558 (805)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (805)
... ..+.
T Consensus 203 -------------------------------------------------------------------~~~------~~l~ 209 (495)
T PRK14995 203 -------------------------------------------------------------------VAI------LLLV 209 (495)
T ss_pred -------------------------------------------------------------------HHH------HHHH
Confidence 000 0000
Q ss_pred cCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccc
Q psy10046 559 NGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSW 638 (805)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (805)
.+ +. .. . ...+........+...+..... +
T Consensus 210 ~~-------------~~---------------~~----~--------~~~~~~~~~~~~~~~~~~~l~~----------f 239 (495)
T PRK14995 210 YS-------------AK---------------TA----L--------KGFLSLWVTSLTLLTGALLLGL----------F 239 (495)
T ss_pred HH-------------HH---------------hc----c--------ccCCchHHHHHHHHHHHHHHHH----------H
Confidence 00 00 00 0 0000000000000000000000 0
Q ss_pred hhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeec
Q psy10046 639 MDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWAC 717 (805)
Q Consensus 639 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~ 717 (805)
.....+..+++++++++|++.++..++..++....+....+++|.|++. +|+++.+++++..+..++..++.++.|++.
T Consensus 240 ~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~ 319 (495)
T PRK14995 240 IRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV 319 (495)
T ss_pred HHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112356778899999999888888888777777788899999987 799999999999999999999999999999
Q ss_pred CCCCccchhHHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHh
Q psy10046 718 DQPWLNVKKTYAACLIGCGVSTALMPLF--ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQG 795 (805)
Q Consensus 718 dr~~~gr~~~~~~~~~~~~i~~l~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ 795 (805)
|| +++|+.+..+.++.+++++++... .++.+...+..++.|++.|..++.....+.+.+|+++++.+.|+.++++.
T Consensus 320 ~r--~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (495)
T PRK14995 320 SR--LGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE 397 (495)
T ss_pred HH--cCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence 99 898888877777766665544322 23455566678888999999888888888899999999999999999999
Q ss_pred hhhccCCCC
Q psy10046 796 IGNLVGPPL 804 (805)
Q Consensus 796 ig~~igp~i 804 (805)
+|+.+|+.+
T Consensus 398 lG~~~G~ai 406 (495)
T PRK14995 398 LGAGLGIAI 406 (495)
T ss_pred HHHHHHHHH
Confidence 999988754
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=274.21 Aligned_cols=341 Identities=19% Similarity=0.208 Sum_probs=284.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q psy10046 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVG 241 (805)
Q Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~ 241 (805)
|..++...+..|..-..-+....++|.+.+|||+|...+|+..|+|.++++++.++...+.+|+.||++++..+.++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 55555555566644444466677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHH
Q psy10046 242 FVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTV 320 (805)
Q Consensus 242 ~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f 320 (805)
.+++++++||+.+++ .|++.|+..|.+++...++..+..| ++|++++++...+..++.++|.+++.++.+.+|||+.|
T Consensus 92 n~l~alAp~f~~Ll~-aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F 170 (394)
T COG2814 92 NLLSALAPSFAVLLL-ARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170 (394)
T ss_pred HHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence 999999999999977 5999999999999999999998886 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccc
Q psy10046 321 LLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATEL 400 (805)
Q Consensus 321 ~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (805)
++.+.++++.++..+...||+.....
T Consensus 171 ~~ia~l~ll~~~~~~~~lP~~~~~~~------------------------------------------------------ 196 (394)
T COG2814 171 LAIAVLALLALLLLWKLLPPSEISGS------------------------------------------------------ 196 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCCCC------------------------------------------------------
Confidence 99999998888888776663100000
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCc
Q psy10046 401 NAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKP 480 (805)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (805)
+
T Consensus 197 ----------------------------------------~--------------------------------------- 197 (394)
T COG2814 197 ----------------------------------------L--------------------------------------- 197 (394)
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcC
Q psy10046 481 LVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNG 560 (805)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (805)
+..
T Consensus 198 -----------------------------------------------------------~~~------------------ 200 (394)
T COG2814 198 -----------------------------------------------------------PGP------------------ 200 (394)
T ss_pred -----------------------------------------------------------Ccc------------------
Confidence 000
Q ss_pred CCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchh
Q psy10046 561 GHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMD 640 (805)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (805)
T Consensus 201 -------------------------------------------------------------------------------- 200 (394)
T COG2814 201 -------------------------------------------------------------------------------- 200 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCC
Q psy10046 641 DARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719 (805)
Q Consensus 641 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr 719 (805)
. .-.++++|+|..+...+..++.+.+.+..++|+..++++ .|++....++++..++++.++|.+++|++.||
T Consensus 201 -~------~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 201 -L------RTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred -h------hHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 0 001367899999999999999999999999999999987 79999999999999999999999999999999
Q ss_pred CCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhc
Q psy10046 720 PWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNL 799 (805)
Q Consensus 720 ~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~ 799 (805)
+.++.+....++.++.++.+.+...+.+...+..+++|+..+..........++ .-++....+.++.....++|..
T Consensus 274 ---~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia 349 (394)
T COG2814 274 ---GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIA 349 (394)
T ss_pred ---cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHH
Confidence 566666667667767766666566777777777777888777766666667776 4468888999998888888887
Q ss_pred cCCCC
Q psy10046 800 VGPPL 804 (805)
Q Consensus 800 igp~i 804 (805)
+|..+
T Consensus 350 ~GA~l 354 (394)
T COG2814 350 LGAAL 354 (394)
T ss_pred HHHHH
Confidence 76543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=281.51 Aligned_cols=176 Identities=18% Similarity=0.219 Sum_probs=155.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
+|.+++.+++..++.+......+...|.+.+++|++..+++++.+++.+++++++++.|+++||+|||+++.++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 56677777766666566667788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh------c
Q psy10046 241 GFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS------E 313 (805)
Q Consensus 241 ~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~------~ 313 (805)
+++++++++|++.+++ .|++.|++.+...+....++.+|+| ++|+++++++..+..+|.++++++++++.. .
T Consensus 86 ~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (412)
T TIGR02332 86 ASTATMFATGPESLYL-LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL 164 (412)
T ss_pred HHHHHHHhcCHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999866 6999999999998888888999998 679999999999999999999999998874 3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 314 YGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 314 ~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
.|||+.|++.+++.++.+++.+++
T Consensus 165 ~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 165 KGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhc
Confidence 699999999888777665555544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=280.00 Aligned_cols=343 Identities=22% Similarity=0.286 Sum_probs=266.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH
Q psy10046 166 LAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLS 245 (805)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~ 245 (805)
+..++...+..+..+.++++.|.+.+++|++..+++++.+++.++++++.+++|+++||+|||++++++.++++++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~ 85 (377)
T TIGR00890 6 LVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY 85 (377)
T ss_pred eHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH
Confidence 33344444455667788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHH
Q psy10046 246 CFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSG 325 (805)
Q Consensus 246 a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~ 325 (805)
+++++++.+++ .|++.|++.+..++.....+.+++|++|+++++++..+..+|.++++++.+.+.+..|||+.|++.++
T Consensus 86 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~ 164 (377)
T TIGR00890 86 AIADSLAALYL-TYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGI 164 (377)
T ss_pred HHHHHHHHHHH-HHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999966 69999999998888888888899999999999999999999998888888888888899999999988
Q ss_pred HHHHHHHHHHhcc-CCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccccc
Q psy10046 326 TFFNLCVCGAIMR-DPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAET 404 (805)
Q Consensus 326 ~~~~~~i~~~~~~-~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (805)
+.++.+++.+++. .|+. ++..+ +
T Consensus 165 ~~~~~~~~~~~~~~~~~~-------~~~~~---~---------------------------------------------- 188 (377)
T TIGR00890 165 IFLLVIVLGAFLIGYPPG-------QLIKT---N---------------------------------------------- 188 (377)
T ss_pred HHHHHHHHHHHheecCch-------hcccc---C----------------------------------------------
Confidence 7777666555432 1210 00000 0
Q ss_pred cccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCccccc
Q psy10046 405 CKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKN 484 (805)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (805)
.+ ..+
T Consensus 189 ------------------------------------~~-----------~~~---------------------------- 193 (377)
T TIGR00890 189 ------------------------------------IE-----------VSV---------------------------- 193 (377)
T ss_pred ------------------------------------cc-----------cch----------------------------
Confidence 00 000
Q ss_pred CCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCcc
Q psy10046 485 HSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRF 564 (805)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (805)
+
T Consensus 194 -----------------------------------------------------------~-------------------- 194 (377)
T TIGR00890 194 -----------------------------------------------------------K-------------------- 194 (377)
T ss_pred -----------------------------------------------------------h--------------------
Confidence 0
Q ss_pred ccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHH
Q psy10046 565 QDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARE 644 (805)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (805)
..+
T Consensus 195 --------------------------------------------------------------------------~~~--- 197 (377)
T TIGR00890 195 --------------------------------------------------------------------------DYT--- 197 (377)
T ss_pred --------------------------------------------------------------------------hhh---
Confidence 000
Q ss_pred HHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccc
Q psy10046 645 LIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNV 724 (805)
Q Consensus 645 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr 724 (805)
..+.++++.++.+.+..++..........+.+.|.++.|.+..+++.+.+..+++.++++++.|++.|| ++|
T Consensus 198 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~g~ 269 (377)
T TIGR00890 198 ------VWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK--IGR 269 (377)
T ss_pred ------HHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh
Confidence 013345666666665555554454445556677777889998888999999999999999999999999 999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 725 KKTYAACLIGCGVSTALMPLFAT-NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
|+.+.++.++.+++++++..... ....+....++.|++.+..++..+.++.|.+|+++++++.|+.+.+..+|++++|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 349 (377)
T TIGR00890 270 QKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGL 349 (377)
T ss_pred hhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 99888888877777666553221 22223344566778888778888889999999999999999999999999999886
Q ss_pred C
Q psy10046 804 L 804 (805)
Q Consensus 804 i 804 (805)
+
T Consensus 350 ~ 350 (377)
T TIGR00890 350 I 350 (377)
T ss_pred H
Confidence 4
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=276.12 Aligned_cols=352 Identities=17% Similarity=0.184 Sum_probs=273.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
++|.+++.+++..++........++..|.+.+++|.+..+++++.+++.++..++.+++|+++||+|||++++++.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 67888888887777665556778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHH
Q psy10046 240 VGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 240 i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
++.++++++++++.+++ .|++.|++.+...+...+++.+++| ++|+++++++..+..+|..+++.+++.+.+..+||+
T Consensus 92 ~~~~~~~~~~~~~~~~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 170 (406)
T PRK11551 92 LFSLATAQAWDFPSLLV-ARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH 170 (406)
T ss_pred HHHHHHHHhccHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 99999999999999866 6999999999999999999999997 779999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhc
Q psy10046 319 TVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVAT 398 (805)
Q Consensus 319 ~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (805)
.|++.+++.++.+++.+++.+..... ...+ ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~--~~---------------------------------------- 202 (406)
T PRK11551 171 IFYVGGVGPLLLVPLLMRWLPESRAF------AQAA--GA---------------------------------------- 202 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhH------Hhcc--Cc----------------------------------------
Confidence 99988776555554444332221000 0000 00
Q ss_pred cccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCC
Q psy10046 399 ELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRG 478 (805)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (805)
+ .+
T Consensus 203 -------------------------------------------~------------~~---------------------- 205 (406)
T PRK11551 203 -------------------------------------------G------------KQ---------------------- 205 (406)
T ss_pred -------------------------------------------c------------hh----------------------
Confidence 0 00
Q ss_pred CcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhh
Q psy10046 479 KPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILV 558 (805)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (805)
...
T Consensus 206 ------------------------------------------------------------~~~----------------- 208 (406)
T PRK11551 206 ------------------------------------------------------------RAP----------------- 208 (406)
T ss_pred ------------------------------------------------------------hhh-----------------
Confidence 000
Q ss_pred cCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccc
Q psy10046 559 NGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSW 638 (805)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (805)
T Consensus 209 -------------------------------------------------------------------------------- 208 (406)
T PRK11551 209 -------------------------------------------------------------------------------- 208 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecC
Q psy10046 639 MDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACD 718 (805)
Q Consensus 639 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~d 718 (805)
. .+..+ +..+.+..+.+.+..++.....+....|+|.|+++.|++...++.+....+++.++++++.|++.|
T Consensus 209 ---~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 280 (406)
T PRK11551 209 ---V---LRALF--GEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMD 280 (406)
T ss_pred ---h---HHHHh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 000111122222333333444555667889999999999999999999999999999999999999
Q ss_pred CCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhh
Q psy10046 719 QPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGN 798 (805)
Q Consensus 719 r~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~ 798 (805)
| +++++.+.++.+..+++++.+. ...+.+.+.+..++.|++.+...+..+.++.+.+|++.|+++.|+.+.+..+|+
T Consensus 281 r--~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 281 R--LRPRRVVLLIYAGILASLAALA-AAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS 357 (406)
T ss_pred H--HhHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence 9 9999888877766666655554 344555566677778888877888889999999999999999999999999999
Q ss_pred ccCCCCC
Q psy10046 799 LVGPPLA 805 (805)
Q Consensus 799 ~igp~ia 805 (805)
++||.++
T Consensus 358 ~~g~~~~ 364 (406)
T PRK11551 358 MAGPLLA 364 (406)
T ss_pred HHHhhhH
Confidence 9998763
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=273.49 Aligned_cols=175 Identities=15% Similarity=0.146 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
+|..++...+..+......+....++|.+.+++|.+..+++++.+++.+++.++.+++|+++||+|||+++.++.+++++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45544444444443222223344557999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHH
Q psy10046 241 GFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGT 319 (805)
Q Consensus 241 ~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~ 319 (805)
+++++++++|++.+++ .|+++|++.+...+...+++.+++| ++|+++++++..+..+|.+++|++++.+.+++|||+.
T Consensus 87 ~~~~~~~~~~~~~l~~-~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~ 165 (390)
T PRK03545 87 SHVLSALAWNFTVLLI-SRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTT 165 (390)
T ss_pred HHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHH
Confidence 9999999999999966 6999999999888888899998887 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy10046 320 VLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 320 f~i~~~~~~~~~i~~~~ 336 (805)
|++.+++.++..+..++
T Consensus 166 f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 166 FLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998877666555444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=284.74 Aligned_cols=393 Identities=16% Similarity=0.187 Sum_probs=283.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy10046 167 AAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSC 246 (805)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a 246 (805)
.+++..++........++.+|.+.+++|.+..+.+++.+++.++..++.+++|+++||+|||++++++.++++++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 33344443434445677778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHH
Q psy10046 247 FSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSG 325 (805)
Q Consensus 247 ~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~ 325 (805)
++++++.+++ .|+++|++.+...+...+++.+++| ++|+++++++..+..+|..+||.+++++.+++||||.|++.++
T Consensus 86 ~~~~~~~l~~-~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~ 164 (485)
T TIGR00711 86 VAPNLELMII-FRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVP 164 (485)
T ss_pred CcCCHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhH
Confidence 9999999866 6999999999999999999999987 7899999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccc
Q psy10046 326 TFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETC 405 (805)
Q Consensus 326 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (805)
+.++..++.++..+++....+.+.+ . ....+.... .....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~d-------------------------~--~g~~l~~~~-----~~~~~-------- 204 (485)
T TIGR00711 165 IGIIVVVVAFFILPRDKPAASENFD-------------------------F--LGLLLLSVG-----LGSLL-------- 204 (485)
T ss_pred HHHHHHHHHHHHcCCccccccCCCc-------------------------H--HHHHHHHHH-----HHHHH--------
Confidence 7766665555443321000000000 0 000000000 00000
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccC
Q psy10046 406 KFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNH 485 (805)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (805)
....
T Consensus 205 --------------------------------------------------------------~~~~-------------- 208 (485)
T TIGR00711 205 --------------------------------------------------------------YGLS-------------- 208 (485)
T ss_pred --------------------------------------------------------------HHHh--------------
Confidence 0000
Q ss_pred CCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccc
Q psy10046 486 SVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQ 565 (805)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (805)
.+.
T Consensus 209 -------------------------------------------------------------------------~~~---- 211 (485)
T TIGR00711 209 -------------------------------------------------------------------------EGP---- 211 (485)
T ss_pred -------------------------------------------------------------------------hCC----
Confidence 000
Q ss_pred cccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHH
Q psy10046 566 DFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDAREL 645 (805)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (805)
+. .+.+-+.+... . ..+... ... +.......
T Consensus 212 -------------------------~~--------~~~~~~~~~~~-~-~~~~~~---~~~-----------~~~~~~~~ 242 (485)
T TIGR00711 212 -------------------------ER--------GWFDSNEILIL-S-ITGLVA---IIA-----------FVVWELTD 242 (485)
T ss_pred -------------------------CC--------CCCCchHHHHH-H-HHHHHH---HHH-----------HHHHHHcC
Confidence 00 00000000000 0 000000 000 00000111
Q ss_pred HhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccc
Q psy10046 646 IVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNV 724 (805)
Q Consensus 646 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr 724 (805)
.++..+.++++++.++..++..++....++...+++|.|+++ .|+++.+++++..+.+++.++++++.|++.|| +++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r--~~~ 320 (485)
T TIGR00711 243 DNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK--IDP 320 (485)
T ss_pred CCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCc
Confidence 234556678899999888888888888888888899999987 79999999999999999999999999999999 999
Q ss_pred hhHHHHHHHHHHHHHhhhhh---hhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccC
Q psy10046 725 KKTYAACLIGCGVSTALMPL---FATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVG 801 (805)
Q Consensus 725 ~~~~~~~~~~~~i~~l~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~ig 801 (805)
|+++.++.++.+++++++.. ...+.+.+++..++.|++.+..++.....+.+.+|++++++++|+.++++.+|+.+|
T Consensus 321 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig 400 (485)
T TIGR00711 321 RKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIG 400 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHH
Confidence 99888888777776665541 123455566677888999888887777778888999999999999999999999998
Q ss_pred CCC
Q psy10046 802 PPL 804 (805)
Q Consensus 802 p~i 804 (805)
+.+
T Consensus 401 ~~i 403 (485)
T TIGR00711 401 TAL 403 (485)
T ss_pred HHH
Confidence 754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-29 Score=265.99 Aligned_cols=369 Identities=18% Similarity=0.195 Sum_probs=295.5
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q psy10046 159 GWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIIS 238 (805)
Q Consensus 159 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~ 238 (805)
+|||.+++..++.+...+.....++...|.+.++.++|.++.+++.+++.+.|+++..+.|.++||.+.|..+.+++++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 36678888888888877777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHH--HHHhhccc
Q psy10046 239 GVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPIT--SYLISEYG 315 (805)
Q Consensus 239 ~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~--~~l~~~~g 315 (805)
++.+++.+++++++.+.+ +-++.|++.|.-.|++..++..|++ ++||+..++|+.+-++|+.+.|++. +++..+.+
T Consensus 105 ai~nil~Gfs~s~~~~~~-l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~ 183 (448)
T COG2271 105 AIVNILFGFSPSLFLFAV-LWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG 183 (448)
T ss_pred HHHHHHHhhhhHHHHHHH-HHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence 999999999999988856 6799999999999999999999998 7899999999999999999999999 99999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhh
Q psy10046 316 WRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETS 395 (805)
Q Consensus 316 Wr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (805)
||..|++-+++++++.++.++..+.+ +++..+|++|+.++-..+..
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~--------------------------Pqs~GLP~ie~~~~d~~e~~-------- 229 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDR--------------------------PQSEGLPPIEEYRGDPLEIY-------- 229 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCC--------------------------ccccCCCCHHHhhcCchhhh--------
Confidence 99999999999888887777653321 12334444433331100000
Q ss_pred hhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCC
Q psy10046 396 VATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASE 475 (805)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (805)
+ +
T Consensus 230 ----------------------------~-------------------------------~------------------- 231 (448)
T COG2271 230 ----------------------------E-------------------------------E------------------- 231 (448)
T ss_pred ----------------------------h-------------------------------h-------------------
Confidence 0 0
Q ss_pred CCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhh
Q psy10046 476 PRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQ 555 (805)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (805)
++
T Consensus 232 ------~~------------------------------------------------------------------------ 233 (448)
T COG2271 232 ------EK------------------------------------------------------------------------ 233 (448)
T ss_pred ------hc------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccC
Q psy10046 556 ILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTEN 635 (805)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (805)
+| +.
T Consensus 234 ----------------------~~------------------------------------------------------~~ 237 (448)
T COG2271 234 ----------------------EN------------------------------------------------------EG 237 (448)
T ss_pred ----------------------cC------------------------------------------------------CC
Confidence 00 00
Q ss_pred ccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheee
Q psy10046 636 TSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALG 714 (805)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g 714 (805)
... +..+-.-+++||..|.++++.++.+..=+.+..|.|.|+.+ +|++...+...++.+=+++++|.+++|
T Consensus 238 ----ls~----~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~G 309 (448)
T COG2271 238 ----LTA----WQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAG 309 (448)
T ss_pred ----ccH----HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 000 11112346899999999999999999999999999999987 899999999999999999999999999
Q ss_pred eecCCCCccchhHHHHHH-HHHHHHHhhhhhhh-hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHH
Q psy10046 715 WACDQPWLNVKKTYAACL-IGCGVSTALMPLFA-TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLL 792 (805)
Q Consensus 715 ~l~dr~~~gr~~~~~~~~-~~~~i~~l~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~ 792 (805)
|++||-.-|||..+.+.+ ++..+++++++... .+++...++.+++|+...+-.-+.-....|..|.+..|++.|+...
T Consensus 310 wlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl 389 (448)
T COG2271 310 WLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL 389 (448)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence 999995446666555444 44444444444322 3567777888888988776666777788899999999999999999
Q ss_pred HHhh-hhccCC
Q psy10046 793 AQGI-GNLVGP 802 (805)
Q Consensus 793 ~~~i-g~~igp 802 (805)
+..+ |++.+.
T Consensus 390 f~Yl~Ga~~a~ 400 (448)
T COG2271 390 FAYLIGAALAG 400 (448)
T ss_pred HHHHhhHHhcC
Confidence 9999 665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-28 Score=269.25 Aligned_cols=171 Identities=19% Similarity=0.245 Sum_probs=151.3
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q psy10046 159 GWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIIS 238 (805)
Q Consensus 159 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~ 238 (805)
+++|..+..+++..+.........+++.|.+.+++|++..+++++.+++.++..++.+++|+++||+|||++++++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35677777777777766555677888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc--
Q psy10046 239 GVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-- 315 (805)
Q Consensus 239 ~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-- 315 (805)
+++.++++++++++.+++ .|++.|++.+...+...+++.+++| ++|+++++++..+..+|.++++.+++.+.+..+
T Consensus 88 ~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFI-ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHhccHHHHHH-HHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999866 6999999999999999999999887 779999999999999999999999999988766
Q ss_pred hHHHHHHHHHHHHHH
Q psy10046 316 WRGTVLLLSGTFFNL 330 (805)
Q Consensus 316 Wr~~f~i~~~~~~~~ 330 (805)
||+.|++.++..++.
T Consensus 167 w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 167 WRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998765544443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=274.23 Aligned_cols=176 Identities=16% Similarity=0.213 Sum_probs=153.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
++|.++...++..++.+.....++..+|.+.+++|++..+.+++.+++.++++++.+++|+++||+|||++++++.++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 45555555555555555555677888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHH
Q psy10046 240 VGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 240 i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
++.++++++++++.+++ .|++.|++.|...+...+++.+++| ++|+++++++..+..+|.+++|++++++.+.+|||+
T Consensus 100 ~~~~~~~~~~~~~~l~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 178 (434)
T PRK11663 100 IINILFGFSSSLWAFAL-LWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY 178 (434)
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 99999999999998866 6999999999888888899999998 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy10046 319 TVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 319 ~f~i~~~~~~~~~i~~~~ 336 (805)
.|++.+++.++..++.++
T Consensus 179 ~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988776655444433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=265.72 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q psy10046 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTF 258 (805)
Q Consensus 179 ~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~ 258 (805)
...+++.+|.+.++||++..+.+++.+.+.++++++++++|+++||+|||++++.+++.+..+.+....++++..+++ +
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 85 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLA-C 85 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHH-H
Confidence 346778889999999999999999999999999999999999999999998877666555554443344478888866 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
|++.|++.+. .......+++++| ++|+++++++..+..+|.++++++++++.+++|||+.|++.+++.++..++.++.
T Consensus 86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 4555556678887 7899999999999999999999999999999999999999888877766655554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=268.11 Aligned_cols=339 Identities=14% Similarity=0.078 Sum_probs=259.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
.|.+....+...+ ........++.+|.+.++||+|..+++++.+++.+++.++++++|+++||+|||++++++++++++
T Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~ 86 (393)
T PRK09705 8 NFMLLVLVLIGLN-MRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV 86 (393)
T ss_pred HHHHHHHHHHHHH-cchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence 3555554433333 333346678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc-chHHH
Q psy10046 241 GFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY-GWRGT 319 (805)
Q Consensus 241 ~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~-gWr~~ 319 (805)
+.++++++++++.+++ .|+++|++.+...+....++.+++|++|+++++++..+..+|..+|+.+++++.++. +||+.
T Consensus 87 ~~~~~~~a~~~~~ll~-~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 87 GALMRELYPQSALLLS-SALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred HHHHHHHCcchHHHHH-HHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999966 699999999998888888888999988999999999999999999999999998875 89998
Q ss_pred HHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcc
Q psy10046 320 VLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATE 399 (805)
Q Consensus 320 f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (805)
+.+.++..++.++..++..+.+ ++ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-------~~---~--------------------------------------------- 190 (393)
T PRK09705 166 LAWWALPAVVALFAWWWQSARE-------VA---S--------------------------------------------- 190 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-------Cc---c---------------------------------------------
Confidence 8776655443332222211000 00 0
Q ss_pred ccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCC
Q psy10046 400 LNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGK 479 (805)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (805)
+ ++ +
T Consensus 191 ----------------------~------------------~~-------------~----------------------- 194 (393)
T PRK09705 191 ----------------------S------------------HK-------------T----------------------- 194 (393)
T ss_pred ----------------------c------------------cC-------------C-----------------------
Confidence 0 00 0
Q ss_pred cccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhc
Q psy10046 480 PLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVN 559 (805)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (805)
. .
T Consensus 195 -----------------------------------------------------------~-~------------------ 196 (393)
T PRK09705 195 -----------------------------------------------------------T-T------------------ 196 (393)
T ss_pred -----------------------------------------------------------C-c------------------
Confidence 0 0
Q ss_pred CCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccch
Q psy10046 560 GGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWM 639 (805)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (805)
T Consensus 197 -------------------------------------------------------------------------------- 196 (393)
T PRK09705 197 -------------------------------------------------------------------------------- 196 (393)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCC
Q psy10046 640 DDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719 (805)
Q Consensus 640 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr 719 (805)
...+.++++.+|.+.+..++...++.....|+|.|++++|++..+++++.++++++.++|+++.|++.||
T Consensus 197 ----------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r 266 (393)
T PRK09705 197 ----------TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARH 266 (393)
T ss_pred ----------CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0012234556666666666666777778889999999899999999999999999999999999999999
Q ss_pred CCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccC-ccchhhhhHHHHHHHhhhh
Q psy10046 720 PWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVP-LDRFATAYGLTLLAQGIGN 798 (805)
Q Consensus 720 ~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~~~a~gl~~~~~~ig~ 798 (805)
+++++.+.++.++.+++++.+.....+...+ ..++.|++.+..++.......+..+ ++.+++++|+.+.+..+++
T Consensus 267 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 342 (393)
T PRK09705 267 --QDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIA 342 (393)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 8998888777766666555443222222222 2345677777777777666667664 6789999999999999998
Q ss_pred ccCCCC
Q psy10046 799 LVGPPL 804 (805)
Q Consensus 799 ~igp~i 804 (805)
.+||++
T Consensus 343 ~~gp~~ 348 (393)
T PRK09705 343 GLAPWF 348 (393)
T ss_pred HHHHHH
Confidence 888764
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=279.44 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q psy10046 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVG 241 (805)
Q Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~ 241 (805)
|.++..+++.+++.+.....+++..|.+.++||++..+.+++.+++.++++++++++|+++||+|||+++.+++++++++
T Consensus 28 ~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 107 (467)
T PRK09556 28 MQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC 107 (467)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH
Confidence 44555555555555666677888899999999999999999999999999999999999999999999998888888777
Q ss_pred HHHHHh-----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc-
Q psy10046 242 FVLSCF-----SRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEY- 314 (805)
Q Consensus 242 ~i~~a~-----a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~- 314 (805)
.++.++ +++++.+++ +|++.|++.+...+....++.+|+| ++||+++|++..+..+|.+++++++.++....
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 108 MLGFGASLGSGSVSLGLMIA-LWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHhcccchHHHHHH-HHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 766554 688988866 6999999999988999999999998 67999999999999999999999988777653
Q ss_pred --chHHHHHHHHHHHHHHHHHHHhc
Q psy10046 315 --GWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 315 --gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+||+.|.+.+++.+++.++.+++
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHh
Confidence 69999988887777666655544
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=262.13 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
.|..++.+.+..++.....+....++|.+.+++|++..+.++..+++.++..++.+++|+++||+|||++++++.+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 46655555555444444444555567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHH
Q psy10046 241 GFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGT 319 (805)
Q Consensus 241 ~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~ 319 (805)
+.++++++++++.+++ +|++.|++.+...+...+++.+++| ++|+++++++..+..+|.+++|++++++.+.+|||+.
T Consensus 98 ~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~ 176 (394)
T PRK10213 98 SCLLVSFANSFSLLLI-GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNV 176 (394)
T ss_pred HHHHHHHHChHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 9999999999999966 6999999999999999999999997 7799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy10046 320 VLLLSGTFFNLCV 332 (805)
Q Consensus 320 f~i~~~~~~~~~i 332 (805)
|++.+++.+++.+
T Consensus 177 f~~~~~l~~~~~l 189 (394)
T PRK10213 177 FNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 9998766555443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=260.34 Aligned_cols=177 Identities=16% Similarity=0.233 Sum_probs=151.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
++|..++.+++..+........++.+.|.+.+++|.+..+++++.+++.++..++.+++|+++||+|||++++++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS 93 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 45655555555555443334566777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHH
Q psy10046 240 VGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 240 i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
++.++++++++++.+++ .|++.|++.+...+...+++.+++| ++|++++++...+..+|..+++.+++++.+..||++
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~ 172 (398)
T TIGR00895 94 VFTLLCALATNVTQLLI-LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRS 172 (398)
T ss_pred HHHHHHHHccchHHHHH-HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccccee
Confidence 99999999999998866 6999999999999999999999998 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy10046 319 TVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 319 ~f~i~~~~~~~~~i~~~~~ 337 (805)
.|++.+++.++..++.+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~ 191 (398)
T TIGR00895 173 LFYVGGIAPLLLLLLLMRF 191 (398)
T ss_pred ehhhhhhHHHHHHHHHHHh
Confidence 9998876555554444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=256.45 Aligned_cols=333 Identities=15% Similarity=0.121 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC-----cHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR-----TIEHM 254 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~-----~~~~l 254 (805)
....+.+|.+..+++.+..+++++.+++.++.+++.+++|+++||+|||++++++.++.+++.++.+++. +++.+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
T TIGR00900 16 AITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQV 95 (365)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 3445556788889999999999999999999999999999999999999999999999988888887776 88888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
++ .|++.|++.+...+...+++.+++| ++|++++++...+..+|.+++|++++++.+..|||+.|++.++..++..++
T Consensus 96 ~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 96 YV-LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 66 6999999999999999999999997 779999999999999999999999999999999999999887766555544
Q ss_pred HHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccccccccc
Q psy10046 334 GAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINI 413 (805)
Q Consensus 334 ~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (805)
.++...|+.. +.+
T Consensus 175 ~~~~~~~~~~----~~~--------------------------------------------------------------- 187 (365)
T TIGR00900 175 IVSVRIPELA----ASE--------------------------------------------------------------- 187 (365)
T ss_pred HHhcccccCC----Ccc---------------------------------------------------------------
Confidence 4443322100 000
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCC
Q psy10046 414 PTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPH 493 (805)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (805)
+. +. .+
T Consensus 188 --------~~-----------------~~------------~~------------------------------------- 193 (365)
T TIGR00900 188 --------IQ-----------------AL------------SN------------------------------------- 193 (365)
T ss_pred --------cc-----------------cc------------ch-------------------------------------
Confidence 00 00 00
Q ss_pred CcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccccccc
Q psy10046 494 EPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLG 573 (805)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (805)
..
T Consensus 194 -----------------------------------------------~~------------------------------- 195 (365)
T TIGR00900 194 -----------------------------------------------AV------------------------------- 195 (365)
T ss_pred -----------------------------------------------hH-------------------------------
Confidence 00
Q ss_pred cccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhcccc
Q psy10046 574 VRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFS 653 (805)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (805)
..+..+.. ..
T Consensus 196 -----------------------------------------------------------------~~~~~~~~-----~~ 205 (365)
T TIGR00900 196 -----------------------------------------------------------------LRDTREGI-----KF 205 (365)
T ss_pred -----------------------------------------------------------------HHHHHhHH-----HH
Confidence 00000000 12
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHH
Q psy10046 654 MFLELHFLLVSISTILLFTWFVIPY-FYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAAC 731 (805)
Q Consensus 654 ~l~~~~~~~~~i~~~~~~~~~~~~~-~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~ 731 (805)
+++++.++.+++..++....+.... .+.|.|.++ .|.+..+.+.+....+++.+++.++.+++.|| .++++.+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~ 283 (365)
T TIGR00900 206 VLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY--FKRMALMTGA 283 (365)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHH
Confidence 4566777776666665555555444 678888876 79999999999999999999999999999999 8898888877
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 732 LIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 732 ~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
.++++++++.+.....+.+.+.+..++.|++.+...+....++.+.+|++.++++.|+.+++..+|+++||.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 356 (365)
T TIGR00900 284 IFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356 (365)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666553222366677788889999999889999999999999999999999999999999988764
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=260.53 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q psy10046 177 GIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYL 256 (805)
Q Consensus 177 ~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i 256 (805)
.....++...|.+.+++|++..+++++.+++.++..++.+++|+++||+|||++++++.++++++.++++++++++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (399)
T TIGR00893 8 LDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYI 87 (399)
T ss_pred HHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 34456677778999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
.|++.|++.+...+....++.+++| ++|++++++...+..+|.++++++++++.+..|||+.|++.+++.++..++.+
T Consensus 88 -~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 88 -LRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred -HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999998 77999999999999999999999999999999999999998887776666555
Q ss_pred hc
Q psy10046 336 IM 337 (805)
Q Consensus 336 ~~ 337 (805)
+.
T Consensus 167 ~~ 168 (399)
T TIGR00893 167 KF 168 (399)
T ss_pred he
Confidence 44
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-27 Score=262.67 Aligned_cols=341 Identities=13% Similarity=0.134 Sum_probs=262.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
||.+...+++..++.......++..+|.+.+++|++..+.+++.+++.+++.++.+++|+++||+|||++++++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555555555555555567788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh-ccchHH
Q psy10046 241 GFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS-EYGWRG 318 (805)
Q Consensus 241 ~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-~~gWr~ 318 (805)
+.++++++++++.+++ .|++.|++.+...+....++.+++| ++|+.++++...+..+|..++|.+.+++.. ..|||+
T Consensus 85 ~~~l~~~~~~~~~~~~-~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~ 163 (394)
T PRK03699 85 AVAGLMFSHSLALFSI-AMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW 163 (394)
T ss_pred HHHHHHHcchHHHHHH-HHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 9999999999988866 6999999999888888888888887 679999999988899999999999988765 579999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhc
Q psy10046 319 TVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVAT 398 (805)
Q Consensus 319 ~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (805)
.|++.+++.++.+++.++.+.|+. ++ .+
T Consensus 164 ~f~~~~~~~~~~~~~~~~~~~p~~-------~~-~~-------------------------------------------- 191 (394)
T PRK03699 164 VYACIGLVYVAIFILTLFSEFPAL-------GK-HA-------------------------------------------- 191 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc-------cc-cC--------------------------------------------
Confidence 999888776665554443322210 00 00
Q ss_pred cccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCC
Q psy10046 399 ELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRG 478 (805)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (805)
++ + ..
T Consensus 192 ----------------------~~-------------------~------------~~---------------------- 196 (394)
T PRK03699 192 ----------------------PK-------------------A------------DK---------------------- 196 (394)
T ss_pred ----------------------cc-------------------c------------cC----------------------
Confidence 00 0 00
Q ss_pred CcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhh
Q psy10046 479 KPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILV 558 (805)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (805)
. .
T Consensus 197 --------------------------------------------------------------~---~------------- 198 (394)
T PRK03699 197 --------------------------------------------------------------P---V------------- 198 (394)
T ss_pred --------------------------------------------------------------c---c-------------
Confidence 0 0
Q ss_pred cCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccc
Q psy10046 559 NGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSW 638 (805)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (805)
T Consensus 199 -------------------------------------------------------------------------------- 198 (394)
T PRK03699 199 -------------------------------------------------------------------------------- 198 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeec
Q psy10046 639 MDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWAC 717 (805)
Q Consensus 639 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~ 717 (805)
.+...++.++.+.+..++.....+.+..|+|.|+++ .|++..+++.+.+.+.++.++|+++.|+++
T Consensus 199 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~ 265 (394)
T PRK03699 199 -------------AKEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIV 265 (394)
T ss_pred -------------ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000012334555555566666666777899999965 799999999999999999999999999999
Q ss_pred CCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhh
Q psy10046 718 DQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIG 797 (805)
Q Consensus 718 dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig 797 (805)
|| +++++++....++.++.++++. ...+.+.+.+..++.|++.+..++....+..+..+ +.++...|+...+..+|
T Consensus 266 dr--~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g 341 (394)
T PRK03699 266 RF--FDLQRILTVLAGLALVLMYLFV-NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIG 341 (394)
T ss_pred HH--hchhhHHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHH
Confidence 99 9999888777766666555544 34455555666778888888888887777777665 44577888998899999
Q ss_pred hccCCCC
Q psy10046 798 NLVGPPL 804 (805)
Q Consensus 798 ~~igp~i 804 (805)
++++|.+
T Consensus 342 ~~i~p~~ 348 (394)
T PRK03699 342 TMLTFVV 348 (394)
T ss_pred HHHHHHH
Confidence 9988864
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=261.80 Aligned_cols=165 Identities=16% Similarity=0.196 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
++|..++.+.+..+.............|.+.+++|++..+.+++.+++.+++.++++++|+++||+|||++++++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44555555555555433334556777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHH
Q psy10046 240 VGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 240 i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
++.++++++++++.+++ +|++.|++.+..++....++.+++| ++|+++++++..+..+|.++++.+.+.+.+..|||+
T Consensus 95 ~~~~~~~~~~~~~~l~~-~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~ 173 (426)
T PRK12307 95 VGTGLSGLASGVIMLTL-SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA 173 (426)
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence 99999999999999866 6999999999999999999999887 679999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy10046 319 TVLLLSG 325 (805)
Q Consensus 319 ~f~i~~~ 325 (805)
.|++.++
T Consensus 174 ~f~i~~~ 180 (426)
T PRK12307 174 AFFVGLL 180 (426)
T ss_pred HHHHHHH
Confidence 9987543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=258.77 Aligned_cols=335 Identities=21% Similarity=0.298 Sum_probs=255.4
Q ss_pred HHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q psy10046 177 GIAFSFGLLYI-EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMY 255 (805)
Q Consensus 177 ~~~~~~~~~~p-~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~ 255 (805)
.....+.+.+| .+.+++|.+..+++++.+++.++..++.+++|+++||+|||++++++.++.+++.++..++++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~- 88 (352)
T PF07690_consen 10 FGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLL- 88 (352)
T ss_dssp HHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHH-
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHH-
Confidence 33344566667 8889999999999999999999999999999999999999999999999999997777777888866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCG 334 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~ 334 (805)
++.|++.|++.+...+...+++.+++| ++|++++++...+..+|.+++|.+++++.+..|||+.|++.+++.++.+++.
T Consensus 89 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 89 LIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 447999999999999999999999998 5899999999999999999999999999999999999999998888877654
Q ss_pred HhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccccccccccccccc
Q psy10046 335 AIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIP 414 (805)
Q Consensus 335 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (805)
.++.+.+.. .+.
T Consensus 169 ~~~~~~~~~---~~~----------------------------------------------------------------- 180 (352)
T PF07690_consen 169 ILFLPEPPP---PRE----------------------------------------------------------------- 180 (352)
T ss_dssp HCCC---ST---TTT-----------------------------------------------------------------
T ss_pred hhhhhhccc---ccc-----------------------------------------------------------------
Confidence 333221000 000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCC
Q psy10046 415 TYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHE 494 (805)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (805)
+.. ++ ++. .
T Consensus 181 -------~~~----------------~~--------~~~--~-------------------------------------- 189 (352)
T PF07690_consen 181 -------RES----------------PK--------ESE--S-------------------------------------- 189 (352)
T ss_dssp ---------S----------------ST--------TTT-----------------------------------------
T ss_pred -------ccc----------------cc--------ccc--c--------------------------------------
Confidence 000 00 000 0
Q ss_pred cccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCcccccccccccc
Q psy10046 495 PLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGV 574 (805)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (805)
T Consensus 190 -------------------------------------------------------------------------------- 189 (352)
T PF07690_consen 190 -------------------------------------------------------------------------------- 189 (352)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhcc--c
Q psy10046 575 RRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFD--F 652 (805)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 652 (805)
+..++..+ .
T Consensus 190 ---------------------------------------------------------------------~~~~~~~~~~~ 200 (352)
T PF07690_consen 190 ---------------------------------------------------------------------KKPKPLKPGFK 200 (352)
T ss_dssp ----------------------------------------------------------------------HHHCCCH-CT
T ss_pred ---------------------------------------------------------------------ccccccccccc
Confidence 00000000 1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHH-HhcCCC-hhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHH
Q psy10046 653 SMFLELHFLLVSISTILLFTWFVIPYFYLTDFV-TNQGLS-KEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAA 730 (805)
Q Consensus 653 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~-~~~G~s-~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~ 730 (805)
.+++++.+|.+.+..++....+.....++|.|+ +..|++ ..+++.+..+.++..++++++.|++.|| +++++...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ 278 (352)
T PF07690_consen 201 SLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR--FGRRRRLLI 278 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred cccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHH
Confidence 234445455444455555556666788999984 458999 7899989999999999999999999999 887666555
Q ss_pred HHHHHHHHHhhhhhh--hhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCC
Q psy10046 731 CLIGCGVSTALMPLF--ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGP 802 (805)
Q Consensus 731 ~~~~~~i~~l~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp 802 (805)
......+..+.+... ..+....++..++.|++.+...+....++.+.+|++++|+++|+.++..++|+++||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 279 AILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 555554444443322 234556666788899999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-26 Score=253.65 Aligned_cols=159 Identities=14% Similarity=0.196 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q psy10046 177 GIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYL 256 (805)
Q Consensus 177 ~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i 256 (805)
.......+.+|.+.+++|++..+++++.+++.+++.++.+++|+++||+|||+++.++.++++++.++++++++++.+++
T Consensus 17 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 96 (382)
T PRK10091 17 MAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAI 96 (382)
T ss_pred hhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 33356666789999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
.|++.|++.+...+....++.++++ ++|+++++++..+..+|..++|++++++.+..|||+.|++.+++.++..+..+
T Consensus 97 -~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 97 -GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred -HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999888888888889987 57999999999999999999999999999999999999998887666555444
Q ss_pred h
Q psy10046 336 I 336 (805)
Q Consensus 336 ~ 336 (805)
+
T Consensus 176 ~ 176 (382)
T PRK10091 176 F 176 (382)
T ss_pred H
Confidence 3
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=258.53 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC---CChhHHHHHHH---HHHHHHHHHHHHHHHHHhhhCChHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFG---ASKSKTAWIGS---LFMAVPLLLGPVASAFVEKFGCRSMTIV 233 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g---~s~~~~~l~~s---~~~lg~~ig~l~~G~LsDr~Grr~vlii 233 (805)
++|..++.+++..++.+.....++...|.+.++++ .+..+.+...+ +..++..++++++|+++||+|||+++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45555555555555545555668888899999985 55554444444 4445555999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHH
Q psy10046 234 AGIISGVGFVLSCFSRTIEH-------MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAP 305 (805)
Q Consensus 234 ~~~l~~i~~i~~a~a~~~~~-------l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~ 305 (805)
++++++++++++++++++.. .++++|+++|++.|+.++...+++.|++| ++||++.++...+..+|.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998742 23457999999999999999999999987 78999999998888888888877
Q ss_pred HHHHHh--------hccchHHHHHHHHHHHHHH
Q psy10046 306 ITSYLI--------SEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 306 i~~~l~--------~~~gWr~~f~i~~~~~~~~ 330 (805)
+...+. ..+|||++|++.+++.++.
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 665543 2579999999866655443
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=244.48 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=172.7
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH
Q psy10046 151 EDSKIPDGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSM 230 (805)
Q Consensus 151 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~v 230 (805)
.....+.++++|...+...+..+...+.....+.+.|.+...+|.+..+..++......|+.+++..||.++|++|||+.
T Consensus 66 a~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~ 145 (528)
T KOG0253|consen 66 AMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKG 145 (528)
T ss_pred hhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchh
Confidence 33445667788888777776666555555666777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHH
Q psy10046 231 TIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSY 309 (805)
Q Consensus 231 lii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~ 309 (805)
+.+..+..++..++.++++|+.++++ +|.+.|+|.|+ .+...++-.+..| .+|+..+-.. ..+.+|.++...++..
T Consensus 146 f~~T~l~t~v~~~is~~spnf~~L~~-f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~ 222 (528)
T KOG0253|consen 146 FNLTFLVTGVFGVISGASPNFASLCV-FRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWG 222 (528)
T ss_pred hhhhHHHHHHHHHhhcCCCCeehhhH-HHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999966 79999999998 7777777778777 6787776666 8999999999999999
Q ss_pred HhhccchHHHHHHHHHHH-HHHHHHHHhccCCchhhhhhchHHHHHhhhc
Q psy10046 310 LISEYGWRGTVLLLSGTF-FNLCVCGAIMRDPEWWTLEQNKEKDLKSIKG 358 (805)
Q Consensus 310 l~~~~gWr~~f~i~~~~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~ 358 (805)
++.++||||.+...+... +...++.+..++|++...+++++++.+.+++
T Consensus 223 vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~k 272 (528)
T KOG0253|consen 223 VMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHK 272 (528)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHH
Confidence 999999999988877543 3444455667889999999999998877665
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=261.65 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhH-HHH-----HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHH
Q psy10046 163 MVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSK-TAW-----IGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGI 236 (805)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~-~~l-----~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~ 236 (805)
..++++++..++.+.....++...|.+.++|+.+... ..+ +.++..+++.+|++++|+++||+|||++++++++
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 95 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV 95 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3444444555544444456777889999998643321 122 2578889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHH
Q psy10046 237 ISGVGFVLSCFSRTIEH-------MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITS 308 (805)
Q Consensus 237 l~~i~~i~~a~a~~~~~-------l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~ 308 (805)
+++++++++++++++.+ +++++|+++|++.|+.++...+++.+++| ++||++.+++..+..+|.++++.+..
T Consensus 96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 23557999999999999999999999997 78999999999888888888877665
Q ss_pred HHh--------hccchHHHHHHHHHHHHH
Q psy10046 309 YLI--------SEYGWRGTVLLLSGTFFN 329 (805)
Q Consensus 309 ~l~--------~~~gWr~~f~i~~~~~~~ 329 (805)
.+. ..+|||+.|++.+++.++
T Consensus 176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 176 LISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 443 257999999986655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=262.16 Aligned_cols=386 Identities=12% Similarity=0.099 Sum_probs=272.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcH
Q psy10046 172 NMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTI 251 (805)
Q Consensus 172 ~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~ 251 (805)
.++.......+...+|.+.+++|.+..+.+++.+.+.++.+++.+++|+++||+|||++++++.++++++.+++++++++
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 98 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTL 98 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 33333334456667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 252 EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 252 ~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
+.+++ .|+++|++.+...+...+++.+++| ++|++++++......+|.++||.+++++.++.||||.|++...+.++.
T Consensus 99 ~~l~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~ 177 (471)
T PRK10504 99 NELLL-ARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIG 177 (471)
T ss_pred HHHHH-HHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 98866 6999999999999999999999988 679999999999999999999999999999999999999987766655
Q ss_pred HHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccccccccccc
Q psy10046 331 CVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSV 410 (805)
Q Consensus 331 ~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (805)
.++.....+.... ...+.+........ ....-.....+.....
T Consensus 178 ~~~~~~~~~~~~~-~~~r~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~------------------- 220 (471)
T PRK10504 178 AIATLMLMPNYTM-QTRRFDLSGFLLLA-----------------VGMATLTLALDGSKGL------------------- 220 (471)
T ss_pred HHHHHHhCCCccc-cCCCCChHHHHHHH-----------------HHHHHHHHHHhcCCcC-------------------
Confidence 5555443322110 00000000000000 0000000000000000
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCC
Q psy10046 411 INIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESD 490 (805)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (805)
T Consensus 221 -------------------------------------------------------------------------------- 220 (471)
T PRK10504 221 -------------------------------------------------------------------------------- 220 (471)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCcccccccc
Q psy10046 491 GPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHS 570 (805)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (805)
.|. .
T Consensus 221 ------------------------------------~~~---------------~------------------------- 224 (471)
T PRK10504 221 ------------------------------------GLS---------------P------------------------- 224 (471)
T ss_pred ------------------------------------Ccc---------------h-------------------------
Confidence 000 0
Q ss_pred ccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhc
Q psy10046 571 KLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMF 650 (805)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (805)
..+ ......+... ........ +...++.+
T Consensus 225 -----------------------------------~~~--~~~~~~~~~~---~~~~~~~~-----------~~~~~~~~ 253 (471)
T PRK10504 225 -----------------------------------LAI--AGLVAVGVVA---LLLYLLHA-----------RNNNRALF 253 (471)
T ss_pred -----------------------------------HHH--HHHHHHHHHH---HHHHHHHH-----------hcCCCCcc
Confidence 000 0000000000 00000000 00012233
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHH
Q psy10046 651 DFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYA 729 (805)
Q Consensus 651 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~ 729 (805)
+.+++|++.++..++..++...++....++.|.|++. .|.++..++++..+..++.+++.++.|++.|| +++|+++.
T Consensus 254 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r--~g~~~~~~ 331 (471)
T PRK10504 254 SLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR--FGYRRVLV 331 (471)
T ss_pred CHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCchHHHH
Confidence 4567899999988888888877777777888999885 89999999999999999999999999999999 99999988
Q ss_pred HHHHHHHHHHhhhhhhh--hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 730 ACLIGCGVSTALMPLFA--TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 730 ~~~~~~~i~~l~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
++.++.++..+++.... ...+.+.+..++.|++.+..++....++.+.+|++.++.++|+.++.+.+|..+||.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i 408 (471)
T PRK10504 332 ATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTI 408 (471)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHH
Confidence 88777766655544322 2233334455667788888888888889999999999999999999999999888764
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-26 Score=261.48 Aligned_cols=165 Identities=11% Similarity=0.078 Sum_probs=134.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCc
Q psy10046 171 INMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT 250 (805)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~ 250 (805)
..++.....+.+++++|.+.+++|++..+++++.+++.+++.++.+++|+++||+|||+++.++.++++++.++++++++
T Consensus 44 ~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s 123 (476)
T PLN00028 44 SFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS 123 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333344456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHh----h-----ccchHHHH
Q psy10046 251 IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLI----S-----EYGWRGTV 320 (805)
Q Consensus 251 ~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~----~-----~~gWr~~f 320 (805)
++.+++ +|++.|++.+... ....++++++| ++||+++++...+..+|..+++.+.+.+. . ..|||+.|
T Consensus 124 ~~~l~~-~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f 201 (476)
T PLN00028 124 ATGFIA-VRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF 201 (476)
T ss_pred HHHHHH-HHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 998866 6999999987644 45567789997 67999999998776677666665554432 2 25899999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy10046 321 LLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 321 ~i~~~~~~~~~i~~~~~ 337 (805)
++.+++.++.+++.+++
T Consensus 202 ~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 202 FVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998877766665544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=259.13 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHh--------CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH
Q psy10046 162 WMVVLAAFFINMAGDGIA-FSFGLLYIEFLNEF--------GASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTI 232 (805)
Q Consensus 162 w~~~~~~~~~~~~~~~~~-~~~~~~~p~i~~~~--------g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vli 232 (805)
+..++++.+..+ ..++. ..++...+.+.+.| +++..+.+++.+++.++.+++++++|+++||+|||++++
T Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~ 89 (479)
T PRK10077 11 FSITLVATLGGL-LFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (479)
T ss_pred HHHHHHHHHHHH-hcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 334444444333 33433 34566667788877 888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc---------Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHH
Q psy10046 233 VAGIISGVGFVLSCFS---------RT---IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFG 299 (805)
Q Consensus 233 i~~~l~~i~~i~~a~a---------~~---~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG 299 (805)
++.++++++.++++++ .+ +..+ +++|+++|++.|+..+...+++++++| ++||+++++...+..+|
T Consensus 90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF-VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHHHHHHHHHHHHhhccccccccccchhHHHHH-HHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence 9999999998888763 12 3445 447999999999999999999999998 77999999999999999
Q ss_pred HhhHHHHHHHHh--------hccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 300 TTVYAPITSYLI--------SEYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 300 ~~lgp~i~~~l~--------~~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
.++++++++.+. ...|||+.|++.+++.++..+..++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred HHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc
Confidence 999988876654 3579999999887766665544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=250.81 Aligned_cols=157 Identities=11% Similarity=0.116 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
..+.+..|.+.+++|.+..+++++.+++.++..++.+++|+++||+|||++++++.++.+++.++++++++++.+++ .|
T Consensus 22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 100 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLV-LR 100 (385)
T ss_pred HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH-HH
Confidence 44556679999999999999999999999999999999999999999999999999999999999999999999866 69
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
++.|++.+...+...+++.+++| ++|++++++......+|..++|.+++++.+..|||+.|++.+++.++..++.++.
T Consensus 101 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 101 FVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987 6799999999999999999999999999999999999999887776665555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=259.13 Aligned_cols=162 Identities=15% Similarity=0.154 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHH
Q psy10046 175 GDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHM 254 (805)
Q Consensus 175 ~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l 254 (805)
.+.....++...|.+.+++|++..+.+++.+++.+++.++.+++|+++||+|||++++++.++.+++.++++++++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (379)
T TIGR00881 7 YYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVM 86 (379)
T ss_pred HHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33445667778899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHH-HHHHHHhhccchHHHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYA-PITSYLISEYGWRGTVLLLSGTFFNLCV 332 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp-~i~~~l~~~~gWr~~f~i~~~~~~~~~i 332 (805)
++ .|++.|++.+...+...+++.+++| ++|++++++...+..+|.+++| ++++.+....+||+.|++.+++.++..+
T Consensus 87 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (379)
T TIGR00881 87 AA-LWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL 165 (379)
T ss_pred HH-HHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 66 6999999999999999999999998 6799999999999999999999 5777777788999999988877766655
Q ss_pred HHHhc
Q psy10046 333 CGAIM 337 (805)
Q Consensus 333 ~~~~~ 337 (805)
+.+++
T Consensus 166 ~~~~~ 170 (379)
T TIGR00881 166 ICFLL 170 (379)
T ss_pred HHhee
Confidence 55544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=252.41 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
..|+..+...+..++.......+.+.+|.+.+++|++..+.++..+++.+++.++.++.|+++||+|||++++++.++++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 89 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34666666666666555555566667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHH
Q psy10046 240 VGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 240 i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
++.++++++++++.+++ .|++.|++.+...+...+++.+++| ++|++++++...+..+|..++|.+++++.++.|||+
T Consensus 90 ~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~ 168 (406)
T PRK15402 90 LTCLAILLAQSIEQFTL-LRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG 168 (406)
T ss_pred HHHHHHHHHccHHHHHH-HHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 99999999999998866 6999999999888888888888887 568888999988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy10046 319 TVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 319 ~f~i~~~~~~~~~i~~~~ 336 (805)
.|++.+++.++.++..++
T Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 169 MFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988877766555444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=263.85 Aligned_cols=180 Identities=13% Similarity=0.157 Sum_probs=154.5
Q ss_pred CCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------------------HhCCChhHHHHHHHHHHHHHHHH
Q psy10046 157 DGGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLN----------------------EFGASKSKTAWIGSLFMAVPLLL 214 (805)
Q Consensus 157 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~----------------------~~g~s~~~~~l~~s~~~lg~~ig 214 (805)
....||.+++..++.....+......+...+.+.+ +++++..+.+++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 34467888888777777666666677666666665 78999999999999999999999
Q ss_pred HHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHH
Q psy10046 215 GPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS--RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSL 291 (805)
Q Consensus 215 ~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a--~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi 291 (805)
++++|+++||+|||+++.++.++++++.+++.++ .+++.+++ +|+++|++.+...+....++.+|+| ++|++++++
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVF-CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHH-HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999998887543 56667645 7999999999999999999999998 789999999
Q ss_pred HHHHhhHHHhhHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 292 GSTGTGFGTTVYAPITSYLISE-YGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 292 ~~~~~~lG~~lgp~i~~~l~~~-~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
...+..+|.++++++++++.+. .|||+.|++.+++.++..++.+++
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999988 499999999988777666655544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=256.53 Aligned_cols=193 Identities=16% Similarity=0.122 Sum_probs=151.1
Q ss_pred CCCchhHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHh-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH
Q psy10046 156 PDGGWGWMVVLAAFFINMAGDGIA-FSFGLLYIEFLNEF-----GASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRS 229 (805)
Q Consensus 156 ~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~p~i~~~~-----g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~ 229 (805)
+.+++++.+++++.+..+. +++. ...+...|.+..++ +.+..+.+++.+.+.+++.++.+++|+++||+|||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~ 87 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFT-DSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR 87 (502)
T ss_pred ccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3344556666666555553 4444 45666667776643 345667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhh
Q psy10046 230 MTIVAGIISGVGFVLSCFSRT------IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTV 302 (805)
Q Consensus 230 vlii~~~l~~i~~i~~a~a~~------~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~l 302 (805)
++++++++++++.++++++.+ ++.+++ +|++.|++.|...+....++.+++| ++||+++++...+..+|.++
T Consensus 88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCF-WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccchHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766 566645 7999999999999999999999998 77999999999999999999
Q ss_pred HHHHHHHHhh-----------------------ccchHHHHHHHHHHHHHHHHHHH-hccCCchhhhhhchH
Q psy10046 303 YAPITSYLIS-----------------------EYGWRGTVLLLSGTFFNLCVCGA-IMRDPEWWTLEQNKE 350 (805)
Q Consensus 303 gp~i~~~l~~-----------------------~~gWr~~f~i~~~~~~~~~i~~~-~~~~p~~~~~~~~~~ 350 (805)
++.++.++.. ..+||+.|.+.++..++.++..+ +.++|+|+..+++.+
T Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~ 238 (502)
T TIGR00887 167 GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDV 238 (502)
T ss_pred HHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcch
Confidence 9988876542 24799999877766655544433 356678887766654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=249.48 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLN-EFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
+..+....+..+..+..-+.++++.+.+.+ +||+|.++.+++.+++.++++++.++.|++.||+|.|+++.++.+++++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 455555555555555666778888788876 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHh---
Q psy10046 241 GFVLSCFS-----RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLI--- 311 (805)
Q Consensus 241 ~~i~~a~a-----~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~--- 311 (805)
.+++++++ ++++.+++ +|++.|++ +..++.....++.|+| ++||+++|++.....+|..+++++...++
T Consensus 113 ~~~~~~~a~~~~~~s~~~lli-~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~ 190 (462)
T PRK15034 113 PCVWLGIAVQNPNTPFGIFIV-IALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP 190 (462)
T ss_pred HHHHHHHHHcccCCCHHHHHH-HHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999987 89999866 69999998 6678889999999998 56999999997666666655554443322
Q ss_pred --h-------------ccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 312 --S-------------EYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 312 --~-------------~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
. ..+||..+++..++.++..++.+++
T Consensus 191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 3348888888887777666666665
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=257.40 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC--
Q psy10046 180 FSFGLLYIEFLNEFGAS--------KSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR-- 249 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s--------~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~-- 249 (805)
..++..++.+..+++.+ ..+.+++.+++.++.+++.+++|+++||+|||++++++.++++++.+++++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 124 (481)
T TIGR00879 45 GVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA 124 (481)
T ss_pred chhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556667778887776 89999999999999999999999999999999999999999999999886543
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHH---HHHhhccchHHHHHHHH
Q psy10046 250 -TIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPIT---SYLISEYGWRGTVLLLS 324 (805)
Q Consensus 250 -~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~---~~l~~~~gWr~~f~i~~ 324 (805)
+++.+++ .|++.|++.+...+...+++.+++| ++|+++++++..+..+|.+++++++ +.+....|||+.|++.+
T Consensus 125 ~~~~~~~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~ 203 (481)
T TIGR00879 125 LSVEMLIV-GRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQL 203 (481)
T ss_pred cchHHHHH-HHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 3446645 7999999999999999999999987 7799999999999999999999999 66667789999999966
Q ss_pred HHHHHHHHHHHh
Q psy10046 325 GTFFNLCVCGAI 336 (805)
Q Consensus 325 ~~~~~~~i~~~~ 336 (805)
+..++.++..++
T Consensus 204 ~~~~~~~~~~~~ 215 (481)
T TIGR00879 204 IPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHhc
Confidence 555544444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=256.37 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
++|.++...++.....+.....++...|++.++ |++..+.+++.+++.++++++++++|+++||+|||++++++.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 346655555554444444445567778888888 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHh-hHHHHHHHHhhc
Q psy10046 240 VGFVLSCFSR----TIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTT-VYAPITSYLISE 313 (805)
Q Consensus 240 i~~i~~a~a~----~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~-lgp~i~~~l~~~ 313 (805)
++.+++++++ +++.+++ +|++.|++.+..++.....+.+++| ++|+++++++..+..+|.. ++|+++..+...
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~-~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 183 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFV-LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF 183 (452)
T ss_pred HHHHHHHhhhcccccHHHHHH-HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999888753 6666655 6999999999888877788888887 6799999999999998875 455544444444
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 314 YGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 314 ~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
.|||+.|++.+++.++..++.+++
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~ 207 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAM 207 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999887776655554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=251.45 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHh--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhCChHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIE-FLNEF--GASKSKTAWIG-----SLFMAVPLLLGPVASAFVEKFGCRSMT 231 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~--g~s~~~~~l~~-----s~~~lg~~ig~l~~G~LsDr~Grr~vl 231 (805)
++|..++.+++..++.+.....++.+.|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 44555555555555443434556666554 45565 67765 34443 345567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhH
Q psy10046 232 IVAGIISGVGFVLSCFSRTIEH-------MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVY 303 (805)
Q Consensus 232 ii~~~l~~i~~i~~a~a~~~~~-------l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lg 303 (805)
++++++++++++++++++++.. +++.+|+++|++.|+.++....++.|++| ++|++..+....+..+|.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999873 23447999999999999999999999998 779999999999999999998
Q ss_pred HHHHHHHhh--------ccchHHHHHHHHHHHH
Q psy10046 304 APITSYLIS--------EYGWRGTVLLLSGTFF 328 (805)
Q Consensus 304 p~i~~~l~~--------~~gWr~~f~i~~~~~~ 328 (805)
+.+...+.. .+|||+.|++.++..+
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 887776653 5799999998766543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=267.80 Aligned_cols=170 Identities=22% Similarity=0.321 Sum_probs=147.8
Q ss_pred HHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy10046 184 LLYIEFLNEFGAS---KSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGL 260 (805)
Q Consensus 184 ~~~p~i~~~~g~s---~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~ 260 (805)
...+.+.++||++ ..+.+++.+++.++++++.+++|+++||+|||++++++.++.+++.++++++++++.+++ +|+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~r~ 188 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLV-FRL 188 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHH-HHH
Confidence 4567888999998 899999999999999999999999999999999999999999999999999999999866 699
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh-cc
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI-MR 338 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~-~~ 338 (805)
+.|++.++..+...+++.+++| ++|+++.+++..+..+|.++++.+++.+.+ ||+.|++.++..++.++..++ .+
T Consensus 189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999997 679999999999999999999998877653 999999988877666555544 34
Q ss_pred CCchhhhhhchHHHHHhhh
Q psy10046 339 DPEWWTLEQNKEKDLKSIK 357 (805)
Q Consensus 339 ~p~~~~~~~~~~~~~~~l~ 357 (805)
+|+|+..+++.+++.+.++
T Consensus 266 sp~~l~~~~~~~~a~~~l~ 284 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQ 284 (505)
T ss_pred ChHHHHHCCCHHHHHHHHH
Confidence 5677777777766665443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=244.44 Aligned_cols=160 Identities=18% Similarity=0.273 Sum_probs=130.6
Q ss_pred HhHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC-cH
Q psy10046 174 AGDGIAFSFGLLYIE-FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR-TI 251 (805)
Q Consensus 174 ~~~~~~~~~~~~~p~-i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~-~~ 251 (805)
+.+.....++++.|. +.+++|++..+++++.+++.++++++.+++|+++||+|||++++++.++.+++.+++++++ ++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~ 91 (366)
T TIGR00886 12 LSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY 91 (366)
T ss_pred HHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334445667778884 8899999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh----------ccchHHHH
Q psy10046 252 EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS----------EYGWRGTV 320 (805)
Q Consensus 252 ~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~----------~~gWr~~f 320 (805)
+.+++ .|++.|++.+. ......++.+++| ++|++++++...+..+|..+++.+++.+.. +.+|||.|
T Consensus 92 ~~~~~-~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 92 SVLLL-LRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHHH-HHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 98866 69999998654 5566778888887 779999999997777777777777766554 34899999
Q ss_pred HH-HHHHHHHHHHHHH
Q psy10046 321 LL-LSGTFFNLCVCGA 335 (805)
Q Consensus 321 ~i-~~~~~~~~~i~~~ 335 (805)
++ .+++.++..++.+
T Consensus 170 ~~~~~~~~~~~~~~~~ 185 (366)
T TIGR00886 170 VIVPAGILLLPALLIF 185 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 54 3554444444433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=249.55 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q psy10046 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTF 258 (805)
Q Consensus 179 ~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~ 258 (805)
..++++++|.+.+++|++..+++++.+++.+++.++.++.|+++||+|||++++++.++.+++.+++ .+++++.+++ .
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~ 93 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA-G 93 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH-H
Confidence 3456778899999999999999999999999999999999999999999999999999888888877 7788888755 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc--chHHHHHHHHHHHH
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY--GWRGTVLLLSGTFF 328 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~--gWr~~f~i~~~~~~ 328 (805)
|++.|++.+...+....++.++++++|+++++++..+..+|..+++.+++.+.+.. +||+.|.+.+++.+
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999988877778888999989999999999999999999999999888765 39999887665443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=244.48 Aligned_cols=162 Identities=11% Similarity=0.130 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHH
Q psy10046 175 GDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHM 254 (805)
Q Consensus 175 ~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l 254 (805)
.+.....+.+.+|.+.+++|.+..+++++.+++.+++.++.+++|+++||+|||++++++.++.+++.++++++++++.+
T Consensus 18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (401)
T PRK11043 18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQL 97 (401)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 33444555666788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
++ .|++.|++.+...+...+++.++++ ++++.+.+.......+|.+++|++++++.+.+|||+.|++.+++.++..++
T Consensus 98 ~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 98 LV-LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HH-HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 66 6999999988877777788888887 568888888888889999999999999999999999999988777766555
Q ss_pred HHhc
Q psy10046 334 GAIM 337 (805)
Q Consensus 334 ~~~~ 337 (805)
.+++
T Consensus 177 ~~~~ 180 (401)
T PRK11043 177 TLRL 180 (401)
T ss_pred HHHc
Confidence 5443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=252.59 Aligned_cols=165 Identities=19% Similarity=0.272 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
.+|..+..+++..++........+.++|.+.+++|++..+++++.+++.++++++.+++|+++||+|||++++++.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 45666666665555544444567777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHH
Q psy10046 240 VGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 240 i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
++.++++++++++.+++ .|++.|++.++..+....++.+++| ++|+++++++..+..+|.+++|.+++++.+.+|||+
T Consensus 97 ~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~ 175 (496)
T PRK03893 97 VGTLACGFAPGYWTLFI-ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA 175 (496)
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 99999999999999866 6999999999999999999998887 679999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy10046 319 TVLLLSG 325 (805)
Q Consensus 319 ~f~i~~~ 325 (805)
.|++.++
T Consensus 176 ~f~~~~~ 182 (496)
T PRK03893 176 LFFIGIL 182 (496)
T ss_pred HHHHHHH
Confidence 9987433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=242.54 Aligned_cols=156 Identities=20% Similarity=0.266 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
..++.+.+++.+++|++..+++++.+++.++..+..+++|+++||+|||++++++.++.+++.++++++++++.+++ .|
T Consensus 28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 106 (400)
T PRK11646 28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL-SC 106 (400)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH-HH
Confidence 34445555678899999999999999999999999999999999999999999999999999999999999998866 69
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
++.|++.+...+...+++.+++| ++|++++++......+|..+||++++++. .+|||+.|++.+++.++..++..++
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888888888888886 78999999999999999999999999998 6899999999887766655444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=247.81 Aligned_cols=164 Identities=21% Similarity=0.179 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHH-HHHHHH-----HHHHHHHHHHHHHHhhhCChHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAW-IGSLFM-----AVPLLLGPVASAFVEKFGCRSMTIVA 234 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l-~~s~~~-----lg~~ig~l~~G~LsDr~Grr~vlii~ 234 (805)
||......++..++.+.....++...|.+.++++.+..+.+. ..+... ++..++++++|+++||+|||++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 455666666666666666678899999999999988776543 333322 23357889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHH
Q psy10046 235 GIISGVGFVLSCFSRTIEH-------MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPI 306 (805)
Q Consensus 235 ~~l~~i~~i~~a~a~~~~~-------l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i 306 (805)
++++++++++++++++++. +++++|+++|++.+...+....++++++| ++|++++++...+..+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874 23447999999999988888899999998 779999999998888888888887
Q ss_pred HHHHh--------hccchHHHHHHHH
Q psy10046 307 TSYLI--------SEYGWRGTVLLLS 324 (805)
Q Consensus 307 ~~~l~--------~~~gWr~~f~i~~ 324 (805)
++.+. +.+|||++|++.+
T Consensus 173 g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHH
Confidence 77653 4689999998754
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=244.28 Aligned_cols=146 Identities=18% Similarity=0.105 Sum_probs=124.3
Q ss_pred HHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc---C-----cHH
Q psy10046 182 FGLLYIE-FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS---R-----TIE 252 (805)
Q Consensus 182 ~~~~~p~-i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a---~-----~~~ 252 (805)
..+++|. +.+++|.+..+++++.+++.++++++++++|+++||+|||++++++.++++++.++++++ . +++
T Consensus 34 ~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (399)
T PRK05122 34 PLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLL 113 (399)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Confidence 3444454 678899999999999999999999999999999999999999999999888876665543 2 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q psy10046 253 HMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFF 328 (805)
Q Consensus 253 ~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~ 328 (805)
.+++ .|++.|++.+...+....++.++.| ++|++++++...+..+|.++|+.+++++.+..||++.+++.+++.+
T Consensus 114 ~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 114 LLLL-GRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred HHHH-HHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5645 6999999999988888888887776 7899999999999999999999999999999999999887655443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=243.84 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---HhcCcHHHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLS---CFSRTIEHMYL 256 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~---a~a~~~~~l~i 256 (805)
...+++.|.+++++|++..+.++..+.+.++++++.++.|+++||+|||+++++++++++++++++ +++++++.+++
T Consensus 43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~ 122 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 567778899999999999999999999999999999999999999999999999999999999875 56889998866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHhhHHHhhHHHHHHHHh
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFEK-KRGLACSLGSTGTGFGTTVYAPITSYLI 311 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p~-~rg~a~gi~~~~~~lG~~lgp~i~~~l~ 311 (805)
.|+++|+|.|...+....++.++.++ +|+..+++++.+..+|..+++.+++.+.
T Consensus 123 -~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 123 -GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999998888774 4556799999999999999999987654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=240.63 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q psy10046 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTF 258 (805)
Q Consensus 179 ~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~ 258 (805)
.....+++|.+.+++|.|..+++++.+++.+++.++++++|+++||+|||+++.++.++++++.++++++++++.+++ .
T Consensus 22 ~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 100 (381)
T PRK03633 22 IAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLA-W 100 (381)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-H
Confidence 345677789999999999999999999999999999999999999999999999999999999999999999999866 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccch
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGW 316 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gW 316 (805)
|++.|++.+...+.....+.+..+ ++|+++++++..+..+|..+||.+++.+.+...|
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 101 RFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999888877777775554 7899999999999999999999999998775433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=241.92 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=120.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH---hc-CcHHHHHHHHHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSC---FS-RTIEHMYLTFGL 260 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a---~a-~~~~~l~i~~R~ 260 (805)
+++.+.+++|++..+++++.+.+.+++.++.+++|+++||+|||++++++.++++++.+++. +. .+++.+++ .|+
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 113 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILL-FYG 113 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHH-HHH
Confidence 34566789999999999999999999999999999999999999999999999988876553 33 56777655 699
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHH-hhHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGT-TVYAPITSYLISEYGWRGTVLLLSGTFFNLC 331 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~-~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~ 331 (805)
+.|++.+...+...+.+.+++| ++|++++|+...+..+|. +++|++++++.+..||+..+|......++..
T Consensus 114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 186 (402)
T TIGR00897 114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGG 186 (402)
T ss_pred HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 9999988877777777777665 889999999999999997 5899999999988998777766554433333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=239.75 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=141.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCc
Q psy10046 171 INMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT 250 (805)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~ 250 (805)
..++.......+.+.+|.+.+++|++..+.+++.+++.+++.++.+++|+++||+|||++++++.++.+++.+++.++++
T Consensus 16 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~ 95 (394)
T PRK11652 16 LVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS 95 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333344455666679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHH
Q psy10046 251 IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFN 329 (805)
Q Consensus 251 ~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~ 329 (805)
++.+++ .|++.|++.+...+....+..++++ ++++++++++..+..+|..++|++++++.+..|||+.|++.+++.++
T Consensus 96 ~~~l~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~ 174 (394)
T PRK11652 96 LTVLIA-ASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAG 174 (394)
T ss_pred HHHHHH-HHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 998866 6999999988877777777777776 67999999999999999999999999999989999999998876665
Q ss_pred HHHHHHh
Q psy10046 330 LCVCGAI 336 (805)
Q Consensus 330 ~~i~~~~ 336 (805)
..++..+
T Consensus 175 ~~~~~~~ 181 (394)
T PRK11652 175 VTFSMAR 181 (394)
T ss_pred HHHHHHH
Confidence 5444433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=240.57 Aligned_cols=331 Identities=15% Similarity=0.097 Sum_probs=251.3
Q ss_pred HHHhHHHHH-HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh---
Q psy10046 172 NMAGDGIAF-SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF--- 247 (805)
Q Consensus 172 ~~~~~~~~~-~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~--- 247 (805)
.++.++..+ ..++++|.+++++|++..+.+++.+.+.+++.++.++.|++.||+|||+++++++++++++.+++..
T Consensus 11 ~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~ 90 (410)
T TIGR00885 11 LFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE 90 (410)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455554 4568889999999999999999999999999999999999999999999999999999999888643
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc-------------
Q psy10046 248 SRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE------------- 313 (805)
Q Consensus 248 a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~------------- 313 (805)
.++++.+++ .|++.|+|.|...+....++.+..| ++|++++++.+.+..+|..++|.+++.+...
T Consensus 91 ~~~~~~~l~-~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~ 169 (410)
T TIGR00885 91 IMNYTLFLV-GLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKL 169 (410)
T ss_pred hccHHHHHH-HHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhc
Confidence 468888756 6999999999999999999887776 6799999999999999999999999877532
Q ss_pred -------------cchHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHH
Q psy10046 314 -------------YGWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLK 380 (805)
Q Consensus 314 -------------~gWr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (805)
.+||++|++.+++.++.+++..+.+.|+. +. ++. +
T Consensus 170 ~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~---~~--~~~-~-------------------------- 217 (410)
T TIGR00885 170 SPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPAL---NH--SDA-K-------------------------- 217 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---Cc--ccc-c--------------------------
Confidence 36999999988876665544433322210 00 000 0
Q ss_pred HHHhcCCCccchhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhh
Q psy10046 381 EMLESGVTPDFIETSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLR 460 (805)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (805)
++
T Consensus 218 --------------------------------------------------------------------------~~---- 219 (410)
T TIGR00885 218 --------------------------------------------------------------------------QI---- 219 (410)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred hhhchhhhccccCCCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCc
Q psy10046 461 QLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPT 540 (805)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (805)
T Consensus 220 -------------------------------------------------------------------------------- 219 (410)
T TIGR00885 220 -------------------------------------------------------------------------------- 219 (410)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccchhhhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhh
Q psy10046 541 HYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWI 620 (805)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (805)
.
T Consensus 220 ~------------------------------------------------------------------------------- 220 (410)
T TIGR00885 220 S------------------------------------------------------------------------------- 220 (410)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred eeccccccccccccCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhc--CCChhhHHHH
Q psy10046 621 IISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQ--GLSKEEATSI 698 (805)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~--G~s~~~a~~~ 698 (805)
..+.. .+++|+|.++..++..++..........|++.|.++. +.+...++..
T Consensus 221 ---------------------~~~~~-----~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~ 274 (410)
T TIGR00885 221 ---------------------FSASL-----SRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANY 274 (410)
T ss_pred ---------------------chhhH-----HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 00000 1346777788877777777777767778999998764 4455555656
Q ss_pred HHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhcc
Q psy10046 699 LSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELV 778 (805)
Q Consensus 699 ~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~ 778 (805)
.+.+..+.++||++++++.|| +++++++.++.++++++++++.. .++.. .....++.|++.+..||..+.+..+..
T Consensus 275 ~~~~~~~~~vGR~~~~~l~~r--~~~~~~l~i~~~~~~~~~ll~~~-~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~ 350 (410)
T TIGR00885 275 NIGAMVIFFISRFIGTWLISY--LAAHKVLMAYAIIGMALCLGSIF-AGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGL 350 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHH-cCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666778889999999999999 99999888888888888777763 33333 355667778888899999999999999
Q ss_pred CccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 779 PLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 779 ~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+++....+.++...+ +|++++|++
T Consensus 351 g~~~~~~s~~l~~~~--~Gga~~p~l 374 (410)
T TIGR00885 351 GQDTKYGAAGLVMAI--IGGGIVPPL 374 (410)
T ss_pred hhhhhhhHHHHHHHH--hccchHHHH
Confidence 877665566665554 888888864
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=238.33 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSK-----TAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHM 254 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~-----~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l 254 (805)
..+.+++|.+.+++|++..+ .+++.+++.++..++.+++|+++||+|||++++++.++.+++.++++++++++.+
T Consensus 31 ~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (408)
T PRK09874 31 SLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQF 110 (408)
T ss_pred HHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666788899999988554 4889999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
++ .|++.|++.+ ..+....++.+++| ++|++++++...+..+|.+++|++++.+.+..|||+.|++.+++.++..+.
T Consensus 111 ~~-~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 188 (408)
T PRK09874 111 LI-LRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV 188 (408)
T ss_pred HH-HHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 66 6999999765 45666677777776 779999999999999999999999999999999999999988877666555
Q ss_pred HHhc
Q psy10046 334 GAIM 337 (805)
Q Consensus 334 ~~~~ 337 (805)
.+++
T Consensus 189 ~~~~ 192 (408)
T PRK09874 189 TLFC 192 (408)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=238.75 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q psy10046 177 GIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYL 256 (805)
Q Consensus 177 ~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i 256 (805)
.....+.+.+|.+.+++|.+..+.++..+++.++++++++++|+++||+|||++++++.++++++.++++++++++.+++
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~ 109 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLI 109 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33355666678999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
.|+++|++.+...+...+++.++++ ++++++++++..+..+|+++||++++++.++.|||+.|++.+++.++.++..+
T Consensus 110 -~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 110 -ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6999999988766667777778887 66899999999999999999999999999989999999998887776655544
Q ss_pred h
Q psy10046 336 I 336 (805)
Q Consensus 336 ~ 336 (805)
+
T Consensus 189 ~ 189 (413)
T PRK15403 189 L 189 (413)
T ss_pred H
Confidence 3
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=234.44 Aligned_cols=305 Identities=25% Similarity=0.304 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q psy10046 177 GIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYL 256 (805)
Q Consensus 177 ~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i 256 (805)
..........|.+.+++|.+..+.+++.+++.++..++.+++|+++||+|||+.++++.++..++.++.+++++++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (352)
T cd06174 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLV 92 (352)
T ss_pred HhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 33455667778899999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
.|++.|++.+...+...+++.+++| ++|++++++...+..+|..++|.+++.+.+..+||+.|++.+++.++..++.+
T Consensus 93 -~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 93 -GRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL 171 (352)
T ss_pred -HHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999998 58999999999999999999999999999999999999998877666655544
Q ss_pred hccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccccccccccc
Q psy10046 336 IMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPT 415 (805)
Q Consensus 336 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (805)
+..
T Consensus 172 ~~~----------------------------------------------------------------------------- 174 (352)
T cd06174 172 FLL----------------------------------------------------------------------------- 174 (352)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 321
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCc
Q psy10046 416 YIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEP 495 (805)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (805)
T Consensus 175 -------------------------------------------------------------------------------- 174 (352)
T cd06174 175 -------------------------------------------------------------------------------- 174 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccccccccc
Q psy10046 496 LVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVR 575 (805)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (805)
T Consensus 175 -------------------------------------------------------------------------------- 174 (352)
T cd06174 175 -------------------------------------------------------------------------------- 174 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhccccch
Q psy10046 576 RDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMF 655 (805)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 655 (805)
T Consensus 175 -------------------------------------------------------------------------------- 174 (352)
T cd06174 175 -------------------------------------------------------------------------------- 174 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhc-CCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchh-HHHHHHH
Q psy10046 656 LELHFLLVSISTILLFTWFVIPYFYLTDFVTNQ-GLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKK-TYAACLI 733 (805)
Q Consensus 656 ~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~-~~~~~~~ 733 (805)
|.++...+..++..........+.|.+.++. |.+..+.+.+....+++.++++++.+++.|| +++|+ .+..+.+
T Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~ 250 (352)
T cd06174 175 --RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR--LGRRRLLLLIGLL 250 (352)
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHH
Confidence 2244555556666667777788899998875 9999999999999999999999999999999 99998 8888888
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 734 GCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 734 ~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.+++.+.+. ..++.+...+..++.|++.+...+....++.+.+|++++++.+|+.++...+|++++|.+
T Consensus 251 ~~~i~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i 320 (352)
T cd06174 251 LAALGLLLLA-LAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL 320 (352)
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877776 445577778888899999999999999999999999999999999999999999988764
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=234.98 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q psy10046 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTF 258 (805)
Q Consensus 179 ~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~ 258 (805)
...+.+.+|.+.+++|.+..+.++..+++.+++.++.++.|+++||+|||++++++.++++++.+++.++++++.+++ .
T Consensus 19 ~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~ 97 (392)
T PRK10473 19 IDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLA-G 97 (392)
T ss_pred HHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHH-H
Confidence 344556789999999999999999999999999999999999999999999999999999999999999999988866 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
|++.|++.+...+...+++.+++| ++|++++++......+|.+++|++++.+.+..|||+.|++.+++.++..++.++.
T Consensus 98 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 98 RFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888899998887 7899999999999999999999999998888999999999887777666655443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=235.93 Aligned_cols=154 Identities=12% Similarity=0.058 Sum_probs=125.7
Q ss_pred HHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy10046 183 GLLYI-EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIV-AGIISGVGFVLSCFSRTIEHMYLTFGL 260 (805)
Q Consensus 183 ~~~~p-~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii-~~~l~~i~~i~~a~a~~~~~l~i~~R~ 260 (805)
.+.+| ++.+++|.+..+++++.+++.++..+..+++|+++||+|||+.+++ +.++.+++.++++++++++.+++ .|+
T Consensus 17 ~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 95 (375)
T TIGR00899 17 FPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLV-LGV 95 (375)
T ss_pred hhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHH-HHH
Confidence 34444 4678899999999999999999999999999999999999887554 56666777888899999998866 588
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHH--HHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLA--CSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a--~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+.|.+.+...+...++..++.+ ++|+.+ .++...+..+|.++||++++++.+..|||+.|++.+++.++..++.+++
T Consensus 96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~ 175 (375)
T TIGR00899 96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLF 175 (375)
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877777777777778776 445543 5777888899999999999999999999999999888776666655554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=235.97 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=121.6
Q ss_pred HHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---Hh-----cCcH
Q psy10046 181 SFGLLYI-EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLS---CF-----SRTI 251 (805)
Q Consensus 181 ~~~~~~p-~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~---a~-----a~~~ 251 (805)
...+++| ++.+++|++..+++++.+++.++++++++++|+++||+|||++++++.+++.++.+.. ++ ..++
T Consensus 33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
T PRK12382 33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKF 112 (392)
T ss_pred HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Confidence 3344445 4678999999999999999999999999999999999999999999988777665432 22 2466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHH
Q psy10046 252 EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGT 326 (805)
Q Consensus 252 ~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~ 326 (805)
+.+++ .|+++|++.+...+...+++.+++| ++|+++++++..+..+|.++||++++++.+..||++.+++..++
T Consensus 113 ~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 113 ALLVV-GRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 77755 6999999999888888888888886 78999999999999999999999999999999999877755443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=243.65 Aligned_cols=175 Identities=16% Similarity=0.196 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
+|..+...++.....+.....+....|.+.+ +|++..+.+++.+++.+++.++.+++|+++||+|||++++++.+++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3555555555444444444445556677765 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh-cc
Q psy10046 241 GFVLSCFS----RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS-EY 314 (805)
Q Consensus 241 ~~i~~a~a----~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-~~ 314 (805)
+.+++++. .+++.+++ .|++.|++.+..++.....+.+++| ++|+++++++..+..+|..+++.+.+.+.. ..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~-~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 182 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFV-LLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN 182 (438)
T ss_pred HHHHHhccccccchHHHHHH-HHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 98887764 45556645 6999999999888888888889997 779999999999999999999888776544 57
Q ss_pred chHHHHHHHHHHHHHHHHHHHhc
Q psy10046 315 GWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 315 gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
|||+.|++.+++.++..++.+++
T Consensus 183 ~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 183 DWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888877766555544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=240.15 Aligned_cols=326 Identities=13% Similarity=0.113 Sum_probs=244.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-----cCcHHHHH
Q psy10046 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF-----SRTIEHMY 255 (805)
Q Consensus 181 ~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~-----a~~~~~l~ 255 (805)
...+.+|.+.++++.+..+++++.+.+.+++.++.+++|+++||+|||++++++.++.+++.++.++ .++++.++
T Consensus 35 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (417)
T PRK10489 35 LLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIY 114 (417)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 4455678888899999999999999999999999999999999999999999888877777665442 46777775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCG 334 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~ 334 (805)
+ .|++.|++.+...+...+++.++.| ++|+++.++...+..+|.++||.+++.+.+..||+|.|++.++..++..++.
T Consensus 115 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 115 L-LGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred H-HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5 6999999988888888888888887 6799999999999999999999999999998999999998776665554443
Q ss_pred HhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccccccccccccccc
Q psy10046 335 AIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIP 414 (805)
Q Consensus 335 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (805)
+...+.+. . . +
T Consensus 194 ~~l~~~~~----~-~----~------------------------------------------------------------ 204 (417)
T PRK10489 194 LRLPALPP----P-P----Q------------------------------------------------------------ 204 (417)
T ss_pred HhCCCCCC----C-C----c------------------------------------------------------------
Confidence 33211000 0 0 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCC
Q psy10046 415 TYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHE 494 (805)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (805)
.+ +
T Consensus 205 --------------------------~~-------------~-------------------------------------- 207 (417)
T PRK10489 205 --------------------------PR-------------E-------------------------------------- 207 (417)
T ss_pred --------------------------cc-------------c--------------------------------------
Confidence 00 0
Q ss_pred cccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCcccccccccccc
Q psy10046 495 PLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGV 574 (805)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (805)
...
T Consensus 208 ----------------------------------------------~~~------------------------------- 210 (417)
T PRK10489 208 ----------------------------------------------HPL------------------------------- 210 (417)
T ss_pred ----------------------------------------------cch-------------------------------
Confidence 000
Q ss_pred ccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhccccc
Q psy10046 575 RRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSM 654 (805)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (805)
.+..+.. ...
T Consensus 211 -----------------------------------------------------------------~~~~~~~-----~~~ 220 (417)
T PRK10489 211 -----------------------------------------------------------------RSLLAGF-----RFL 220 (417)
T ss_pred -----------------------------------------------------------------HHHHHHH-----HHH
Confidence 0000000 023
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHH
Q psy10046 655 FLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLI 733 (805)
Q Consensus 655 l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~ 733 (805)
++++.++...+..++... ......++|.|+++ .|++...++++.+..+++.+++.++.+++.|| .++++++..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~--~~~~~~l~~~~~ 297 (417)
T PRK10489 221 LASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS--ARPGLLMLLSTL 297 (417)
T ss_pred HcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc--cCcchHHHHHHH
Confidence 455555544444333322 33456678999887 89999999999999999999999999999998 666767777666
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 734 GCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 734 ~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.+++++++. ...+.+...++.+++|++.+...+....++.+.+|++.||+++|+++++..+|+.+||.+
T Consensus 298 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 298 GSFLAVGLFG-LMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred HHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 6666665554 345556666677778888777777778889999999999999999999999999988764
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-24 Score=228.18 Aligned_cols=339 Identities=20% Similarity=0.271 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH
Q psy10046 163 MVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGF 242 (805)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~ 242 (805)
..+.+..+.....+..-+.++++.+.+.+++|+|..|.+++.++..+..++..++.|.+.||||.|+++++++++..+-+
T Consensus 14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~ 93 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC 93 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence 33334444444444445567777788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc---
Q psy10046 243 VLSCFSRTIE---HMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG--- 315 (805)
Q Consensus 243 i~~a~a~~~~---~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g--- 315 (805)
+..+++...+ ++++ ++++.|++++ .++.....++.||| +++|.++|+.. ..++|..+..+++..++...|
T Consensus 94 ~~~~~a~~~~~~~~ll~-~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~ 170 (417)
T COG2223 94 LGLAFAVTYPSTWQLLV-IGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLA 170 (417)
T ss_pred HHHHHHccCCchHHHHH-HHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHH
Confidence 9998875444 8755 6999999755 57888899999998 66999999999 888999999999988888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhh
Q psy10046 316 WRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETS 395 (805)
Q Consensus 316 Wr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (805)
|+...++..+..++..+..++..... ++. +...+.
T Consensus 171 w~~~~~i~~~~l~v~~v~~~~~~~d~-------p~~-r~~~~~------------------------------------- 205 (417)
T COG2223 171 WRNVAGIYVVALAIAAVLAWLGMNDV-------PEH-RASVKP------------------------------------- 205 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-------hhh-hccccc-------------------------------------
Confidence 99999888888877777777653210 000 000000
Q ss_pred hhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCC
Q psy10046 396 VATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASE 475 (805)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (805)
T Consensus 206 -------------------------------------------------------------------------------- 205 (417)
T COG2223 206 -------------------------------------------------------------------------------- 205 (417)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhh
Q psy10046 476 PRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQ 555 (805)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (805)
+
T Consensus 206 --------------------------------------------------------~----------------------- 206 (417)
T COG2223 206 --------------------------------------------------------Q----------------------- 206 (417)
T ss_pred --------------------------------------------------------c-----------------------
Confidence 0
Q ss_pred hhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccC
Q psy10046 556 ILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTEN 635 (805)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (805)
T Consensus 207 -------------------------------------------------------------------------------- 206 (417)
T COG2223 207 -------------------------------------------------------------------------------- 206 (417)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheee
Q psy10046 636 TSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALG 714 (805)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g 714 (805)
.+..-..++++++.|.+++..+..+.++..+..++|.|+++ +|.++..++.+.....+.+.+.|.++|
T Consensus 207 -----------~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG 275 (417)
T COG2223 207 -----------LPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGG 275 (417)
T ss_pred -----------chhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccc
Confidence 00000145678899999999999999999999999999996 899999999999999999999999999
Q ss_pred eecCCCCccchhHHHHHHHHHHHHHhhhhhhh------hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhH
Q psy10046 715 WACDQPWLNVKKTYAACLIGCGVSTALMPLFA------TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYG 788 (805)
Q Consensus 715 ~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~g 788 (805)
+|+|| ++.++.+.+.++++.++..++.... .+....+...+..+++.|.....++-+++.+++ +..|.+.|
T Consensus 276 ~LsDR--~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G 352 (417)
T COG2223 276 WLSDR--IGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTG 352 (417)
T ss_pred hhhhh--ccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHH
Confidence 99999 9988888887777777766655333 334455555556666667667777777777774 47799999
Q ss_pred HHHHHHhhhhccCC
Q psy10046 789 LTLLAQGIGNLVGP 802 (805)
Q Consensus 789 l~~~~~~ig~~igp 802 (805)
+..+.+++|+.+-|
T Consensus 353 ~vga~G~lGGf~lp 366 (417)
T COG2223 353 IVGAIGGLGGFFLP 366 (417)
T ss_pred HHHHhccccccchh
Confidence 99999999987655
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=234.78 Aligned_cols=157 Identities=12% Similarity=0.133 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
..+.+.+|.+.+++|++..+++++.+++.++..++.+++|+++||+|||++++++.++.+++.++++++++++.+++ +|
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 86 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY-MR 86 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH-HH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999998866 69
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
++.|++.+...+...+++.+++| ++|++++++...+..+|..++|++++.+.+..|||+.|++.+++.++..++.++.
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888899999887 6799999999999999999999999999999999999998887776665555443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=238.80 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=147.5
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q psy10046 158 GGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGII 237 (805)
Q Consensus 158 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l 237 (805)
...||..+++.+++.. ..+..+.++++.+.+.+++|++..+++++.++. ..++++.++.|+++||+|+|++++++.++
T Consensus 23 e~~Rw~~lva~~~~~~-~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll 100 (591)
T PTZ00207 23 EPRRFALLVLGAFCSI-CTSFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV 100 (591)
T ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3467877777666555 446678888899999999999999999998874 45566788899999999999999999999
Q ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHh
Q psy10046 238 SGVGFVLSCFS------RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLI 311 (805)
Q Consensus 238 ~~i~~i~~a~a------~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~ 311 (805)
+++++++++++ .+++.+++ +|++.|+|.+...+....++.+|||++||+++|+...+.++|.++.+.+...+.
T Consensus 101 ~~iG~ll~ala~~~~i~~s~~~l~l-~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 101 FCLGTLLFALTFQEVIEGSVVRLSV-YNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 68888867 699999999988888888888999999999999999999999986555554444
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHh-ccCC
Q psy10046 312 SEYGWRGTVLLLSGTFFNLCVCGAI-MRDP 340 (805)
Q Consensus 312 ~~~gWr~~f~i~~~~~~~~~i~~~~-~~~p 340 (805)
. .+|++.|++.+++.+++.++.++ ++.|
T Consensus 180 ~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 180 S-DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred H-HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 3 47999999998877776666554 4444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=242.61 Aligned_cols=389 Identities=17% Similarity=0.142 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
...+..++++..++|-+ ....|+.+.+.++.+++.++.|+|+|.||||++++++.++..+|+++++.++|...++. .-
T Consensus 61 ~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~ia-g~ 138 (599)
T PF06609_consen 61 VLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIA-GM 138 (599)
T ss_pred hccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHH-HH
Confidence 33455678999999964 67889999999999999999999999999999999999999999999999999999955 57
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-Hhc
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCG-AIM 337 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~-~~~ 337 (805)
.+.|+|.|.... ....++|..| |.|+...++......+...++|.++..+..+.+|||.|++.+++..+.+++. +++
T Consensus 139 ~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 139 VLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred HHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 999999877654 3455788888 7798888877776666667888888888777899999999988766655544 445
Q ss_pred cCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccccccccccccc
Q psy10046 338 RDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPTYI 417 (805)
Q Consensus 338 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (805)
+||++...++++...++
T Consensus 218 ~PP~~~~~~~~~~s~~~--------------------------------------------------------------- 234 (599)
T PF06609_consen 218 FPPPRAQLHGRKLSKRE--------------------------------------------------------------- 234 (599)
T ss_pred CCCchhhhccccCcHHH---------------------------------------------------------------
Confidence 56542211110000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCccc
Q psy10046 418 RNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLV 497 (805)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (805)
T Consensus 235 -------------------------------------------------------------------------------- 234 (599)
T PF06609_consen 235 -------------------------------------------------------------------------------- 234 (599)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccccccccccc
Q psy10046 498 SAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRD 577 (805)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (805)
.+.+.||+|.++... .....++++.
T Consensus 235 -------------------------------------------------~l~~lD~IG~~L~~~----Gl~LfLlgl~-- 259 (599)
T PF06609_consen 235 -------------------------------------------------QLKELDWIGIFLFIA----GLALFLLGLS-- 259 (599)
T ss_pred -------------------------------------------------HHHHhhHHHHHHHHH----HHHHHHHHHh--
Confidence 012334444432211 0000000000
Q ss_pred cccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHH-HHHhhhccccchh
Q psy10046 578 TNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDAR-ELIVGMFDFSMFL 656 (805)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 656 (805)
. ......-|++...++-+......+ +.. ...+.. ...+++++.++||
T Consensus 260 -----------w------------gG~~~~~W~Sa~VIa~lviG~~~L-v~F--------~~wE~~~~~~~Pl~P~~Lf~ 307 (599)
T PF06609_consen 260 -----------W------------GGYPYYPWKSAHVIAPLVIGFVLL-VAF--------VVWEWFGAPKDPLFPHRLFK 307 (599)
T ss_pred -----------c------------cCCCCCCCCCccchhhHHHHHHHH-HHH--------HHhhhhccCCCCcCCHHHhc
Confidence 0 000000000000000000000000 000 001111 1236789999999
Q ss_pred h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCCh---hhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHH-HH
Q psy10046 657 E-LHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSK---EEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTY-AA 730 (805)
Q Consensus 657 ~-~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~---~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~-~~ 730 (805)
+ |.+...++..++....++....+.|..... ++-|+ ...+++..+.+++.++|.++.|++..+ +++.|+. ++
T Consensus 308 ~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~--ir~~Kw~li~ 385 (599)
T PF06609_consen 308 DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK--IRHIKWQLIF 385 (599)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH--ccchhHHHHH
Confidence 8 567776677777777777777777877665 55554 356777888888999999999999987 5555544 34
Q ss_pred HHHHHHHHHhhhhh-hhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 731 CLIGCGVSTALMPL-FATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 731 ~~~~~~i~~l~~~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
+.+++.+++-++.. ..++....+.+.++.|++.|.......++++-.+|++..|++.|+...++.+|+.+|..
T Consensus 386 ~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~a 459 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYA 459 (599)
T ss_pred HHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444332222221 23344555677888899888888788888888899999999999999999999988753
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-24 Score=239.32 Aligned_cols=147 Identities=19% Similarity=0.313 Sum_probs=134.8
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHH
Q psy10046 191 NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT--IEHMYLTFGLLAGIGLAL 268 (805)
Q Consensus 191 ~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~--~~~l~i~~R~l~G~g~g~ 268 (805)
.+++++..+-+++.+.+..|+.+++++.|+++||+|.|+++.++.++.++++++..++.+ ++.+ +++|+++|++.|.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~-~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLL-LVLRFLQGLGQGV 144 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHhHHHHhH
Confidence 368889999999999999999999999999999999999999999999999999887643 3444 4579999999999
Q ss_pred HHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHhcc
Q psy10046 269 SYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE-YGWRGTVLLLSGTFFNLCVCGAIMR 338 (805)
Q Consensus 269 ~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~-~gWr~~f~i~~~~~~~~~i~~~~~~ 338 (805)
.+++...+.+.|.| +||++..++...+..+|.+++-+++|++.+. +||+++|++.++++++..++++++.
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 8999999999999999999999999999998 9999999999999998888876653
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=234.50 Aligned_cols=323 Identities=10% Similarity=0.022 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHH----HHHHHHHHHHHHHHHhcCcHHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMT----IVAGIISGVGFVLSCFSRTIEHMY 255 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vl----ii~~~l~~i~~i~~a~a~~~~~l~ 255 (805)
..+.+++|.+.+++|++..+++++.+++.++..++++++|+++||+||+... .++.+++.+ +.+.++++++.++
T Consensus 21 ~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~ 98 (382)
T TIGR00902 21 GIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLF 98 (382)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHH
Confidence 3455667889999999999999999999999999999999999999985433 222222222 2445678898886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
+ .|++.|++.+...+...++..++ .++|++++|....+..+|.+++|++++++.+++|||+.|++.+++.++. ++.+
T Consensus 99 ~-~~~l~~~~~~~~~p~~~al~~~~-~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~-~~~~ 175 (382)
T TIGR00902 99 I-AIGLFALFFSAGMPIGDALANTW-QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFM-LIGF 175 (382)
T ss_pred H-HHHHHHHHHccchhHHHHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHH
Confidence 6 58999988888777777776544 6778999999999999999999999999999999999998876543322 2222
Q ss_pred hccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccccccccccc
Q psy10046 336 IMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPT 415 (805)
Q Consensus 336 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (805)
+..+... +.++ +
T Consensus 176 ~~~~~~~---~~~~----~------------------------------------------------------------- 187 (382)
T TIGR00902 176 LIKPTIP---PKDA----I------------------------------------------------------------- 187 (382)
T ss_pred HcCCCCC---CCcc----c-------------------------------------------------------------
Confidence 2211100 0000 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCc
Q psy10046 416 YIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEP 495 (805)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (805)
+..+
T Consensus 188 -------------------------------------~~~~--------------------------------------- 191 (382)
T TIGR00902 188 -------------------------------------PEDE--------------------------------------- 191 (382)
T ss_pred -------------------------------------cccc---------------------------------------
Confidence 0000
Q ss_pred ccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccccccccc
Q psy10046 496 LVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVR 575 (805)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (805)
...
T Consensus 192 --------------------------------------------~~~--------------------------------- 194 (382)
T TIGR00902 192 --------------------------------------------SQG--------------------------------- 194 (382)
T ss_pred --------------------------------------------ccc---------------------------------
Confidence 000
Q ss_pred cccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhccccch
Q psy10046 576 RDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMF 655 (805)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 655 (805)
.+. ..+++
T Consensus 195 ----------------------------------------------------------------------~~~--~~~~l 202 (382)
T TIGR00902 195 ----------------------------------------------------------------------DSA--FIALL 202 (382)
T ss_pred ----------------------------------------------------------------------chh--HHHHH
Confidence 000 02567
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHH
Q psy10046 656 LELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGC 735 (805)
Q Consensus 656 ~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~ 735 (805)
|+|++|.+.+..++...+...+..+.|.|+++.|.+....+++.....++.+++.++.+++.|| ++.++++.++.+++
T Consensus 203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r--~g~~~~l~~~~~~~ 280 (382)
T TIGR00902 203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQN--CSARDLLLISAIAC 280 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh--CCHHHHHHHHHHHH
Confidence 8899999988888888888888889999999999999999999998889999999999999999 99999999999999
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHH-HHHhhhhccCCCC
Q psy10046 736 GVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTL-LAQGIGNLVGPPL 804 (805)
Q Consensus 736 ~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~-~~~~ig~~igp~i 804 (805)
++..+++. ..++.+.+++..++.|++++..++....++.+. |+++++++.|+++ +..++|.++||.+
T Consensus 281 ~~~~~~~~-~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 281 VGRWAIIG-AIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred HHHHHHHH-hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776 467778888889999999999999988899987 9889999999987 4667788777754
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=230.61 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy10046 182 FGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLL 261 (805)
Q Consensus 182 ~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l 261 (805)
...+.+++.+++|++..+++++.+++.+++.++.+++|+++||+|||++++++.++.+++.++.+++++++.+++ +|++
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 105 (395)
T PRK10054 27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVL-FFAL 105 (395)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 334445677889999999999999999999999999999999999999999999999999999999999888755 5888
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 262 AGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 262 ~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
.|.+.+...+...++..+..| ++|++++++......+|.+++|++++++.. .||++.|++.+++.++.+++.++
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 106 INCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence 888777777778888887776 679999999999999999999999999875 79999999887776665544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=225.96 Aligned_cols=143 Identities=17% Similarity=0.106 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy10046 183 GLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLA 262 (805)
Q Consensus 183 ~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~ 262 (805)
....+.+.++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.+++++++++++++.+. ++ .|+++
T Consensus 23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~-~r~l~ 98 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LL-AYGLV 98 (393)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HH-HHHHH
Confidence 333456688999999999999999999999999999999999999999999999999998887776654 34 59999
Q ss_pred HHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 263 GIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
|++.+...+...+++.+++| ++|++++++......+|.++||.++|++.+. .|+..+++.++..++.
T Consensus 99 G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 99 GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999998 7799999999999999999999999999885 4777776665444333
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=235.55 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=140.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLA 267 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g 267 (805)
.+.+|.+....+.+++.++|.++|+++.++++.|.||++..+.+....+++++..++.+...|++.+++ .|++.|+..+
T Consensus 71 g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ia-lr~llGl~es 149 (495)
T KOG2533|consen 71 GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIA-LRFLLGLFES 149 (495)
T ss_pred CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhc
Confidence 355888999999999999999999999999999999999999999999999999999888999999955 7999999999
Q ss_pred HHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHh------hccchHHHHHHHHHHHHHHHHHHHhccCC
Q psy10046 268 LSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLI------SEYGWRGTVLLLSGTFFNLCVCGAIMRDP 340 (805)
Q Consensus 268 ~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~------~~~gWr~~f~i~~~~~~~~~i~~~~~~~p 340 (805)
+.+|....+++.|+. ++||..+|+|.+...+|.++|++++..+. ...||||.|++.|+++++..++.+++.|.
T Consensus 150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 999999999999997 77999999999999999999999999874 35799999999999999998888877664
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=226.41 Aligned_cols=151 Identities=20% Similarity=0.293 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhC--CChhHHHHHHHH--HH---HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHH
Q psy10046 180 FSFGLLYIEFLNEFG--ASKSKTAWIGSL--FM---AVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIE 252 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g--~s~~~~~l~~s~--~~---lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~ 252 (805)
+.++...+.+.+++. .+..+.+++.+. +. ++..++.+++|+++||+|||++++++.++++++.+++++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 89 (394)
T TIGR00883 10 YLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYA 89 (394)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChh
Confidence 444555566666653 444555544433 33 33456899999999999999999999999999999999999875
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHh--------hccch
Q psy10046 253 H-------MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLI--------SEYGW 316 (805)
Q Consensus 253 ~-------l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~--------~~~gW 316 (805)
. +++..|+++|++.+...+....++.++++ ++|++++++...+..+|.+++++++..+. ..+||
T Consensus 90 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w 169 (394)
T TIGR00883 90 TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169 (394)
T ss_pred hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccch
Confidence 3 23447999999999989999999999987 78999999999999999999998887654 35789
Q ss_pred HHHHHHHHHHHHHH
Q psy10046 317 RGTVLLLSGTFFNL 330 (805)
Q Consensus 317 r~~f~i~~~~~~~~ 330 (805)
|+.|++.+++.++.
T Consensus 170 ~~~~~~~~~~~~~~ 183 (394)
T TIGR00883 170 RIPFLVSAVLVLIG 183 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998876655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-22 Score=218.71 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChHH-HHHHHHHHHHHHHHHHhc---CcHH
Q psy10046 182 FGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF-----GCRSM-TIVAGIISGVGFVLSCFS---RTIE 252 (805)
Q Consensus 182 ~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~-----Grr~v-lii~~~l~~i~~i~~a~a---~~~~ 252 (805)
.+...|.+.+++|+|.+++++..++ .+.+++ .+++|+++||+ |||+. ++++.++.++..++.++. .+++
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~ 84 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP 84 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 4556789999999999999999755 555555 89999999998 89886 566777777777777776 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc--------hHHHHHHH
Q psy10046 253 HMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG--------WRGTVLLL 323 (805)
Q Consensus 253 ~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g--------Wr~~f~i~ 323 (805)
.+++ ..++.|++.+...++..+++.+++| ++|+++.++...+..+|.++++.+++.+....| ||+.|++.
T Consensus 85 ~l~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ 163 (356)
T TIGR00901 85 LLAG-LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT 163 (356)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence 4544 4677788888888888999999996 789999999999999999999999999998888 99999988
Q ss_pred HHHHHHHHHHHHh
Q psy10046 324 SGTFFNLCVCGAI 336 (805)
Q Consensus 324 ~~~~~~~~i~~~~ 336 (805)
+++.++..+..++
T Consensus 164 ai~~l~~~~~~~~ 176 (356)
T TIGR00901 164 ALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 8766665544443
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=230.84 Aligned_cols=178 Identities=16% Similarity=0.116 Sum_probs=163.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
+.++.+++.+++..+.+...+...-.++.+.+.||+++...|++.+.+.+.++++.|++|+|+||+.|++++.+|.++|+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWT 109 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHH
Confidence 44677777788888888877888778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hH
Q psy10046 240 VGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WR 317 (805)
Q Consensus 240 i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr 317 (805)
++.++++++..+|++.+ +|.+.|+|.+.+.+..+.++++.|| .+|++++++++.+..+|..+|-+++..+.+..+ ||
T Consensus 110 ~Av~~~~fs~~Fwq~~l-~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 110 LAVFASGFSNHFWQVLL-CRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 99999999999999866 7999999999999999999999998 679999999999999999999999998888776 99
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q psy10046 318 GTVLLLSGTFFNLCVCGAIMR 338 (805)
Q Consensus 318 ~~f~i~~~~~~~~~i~~~~~~ 338 (805)
|.|++.+++++++.++.+++.
T Consensus 189 ~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhc
Confidence 999999999998888877654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=224.64 Aligned_cols=323 Identities=11% Similarity=0.013 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh----HHHHHHHHHHHHHHHHHHhcCcHHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCR----SMTIVAGIISGVGFVLSCFSRTIEHMY 255 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr----~vlii~~~l~~i~~i~~a~a~~~~~l~ 255 (805)
..+.+++|.+.+++|.|..++|++.+++.++..++++++|+++||+||+ +.+.+..++. ....+...++++.++
T Consensus 21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 98 (382)
T PRK11128 21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLF 98 (382)
T ss_pred HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHH
Confidence 3455566788899999999999999999999999999999999999984 3333222222 223344568888886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
+ .|++.|++.+...+...+++.++ .++|+++++....+..+|.++||++++++.+++|||..|++.++..++.+++.
T Consensus 99 i-~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~- 175 (382)
T PRK11128 99 V-AIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ- 175 (382)
T ss_pred H-HHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-
Confidence 6 69999999888778777666665 56688888888888899999999999999999999999998775444333322
Q ss_pred hccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccccccccccc
Q psy10046 336 IMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPT 415 (805)
Q Consensus 336 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (805)
+..+.. .+++ +
T Consensus 176 ~~~~~~------~~~~--~------------------------------------------------------------- 186 (382)
T PRK11128 176 LLRPTI------MPQG--E------------------------------------------------------------- 186 (382)
T ss_pred HccCCC------CCcc--c-------------------------------------------------------------
Confidence 221110 0000 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCc
Q psy10046 416 YIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEP 495 (805)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (805)
+++ + .
T Consensus 187 ----~~~------------------~--------------~--------------------------------------- 191 (382)
T PRK11128 187 ----SRQ------------------Q--------------E--------------------------------------- 191 (382)
T ss_pred ----ccc------------------c--------------c---------------------------------------
Confidence 000 0 0
Q ss_pred ccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccccccccc
Q psy10046 496 LVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVR 575 (805)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (805)
. +.
T Consensus 192 -------------------------------------------~-----~~----------------------------- 194 (382)
T PRK11128 192 -------------------------------------------S-----AG----------------------------- 194 (382)
T ss_pred -------------------------------------------c-----cc-----------------------------
Confidence 0 00
Q ss_pred cccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhccccch
Q psy10046 576 RDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMF 655 (805)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 655 (805)
.+.. .+++
T Consensus 195 ----------------------------------------------------------------------~~~~--~~i~ 202 (382)
T PRK11128 195 ----------------------------------------------------------------------WPAW--KALL 202 (382)
T ss_pred ----------------------------------------------------------------------cchH--HHHH
Confidence 0000 2457
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHH
Q psy10046 656 LELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGC 735 (805)
Q Consensus 656 ~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~ 735 (805)
|++.+|.+++..++..........++|.|+++.|++....+++.+...++.+++.++.|++.|| +++++.+.++.++.
T Consensus 203 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~l~~~~~~~ 280 (382)
T PRK11128 203 KEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR--WSARDLLLLSAICG 280 (382)
T ss_pred cChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHH
Confidence 8888888887777776777677788899988899999999998888889999999999999999 99999988888888
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHH-HHHhhhhccCCCC
Q psy10046 736 GVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTL-LAQGIGNLVGPPL 804 (805)
Q Consensus 736 ~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~-~~~~ig~~igp~i 804 (805)
++..+++. ..++.+.+++..++.|++.+...+....++.+. +++++++..|+++ ...++|..+||.+
T Consensus 281 ~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 281 VVRWGLMG-STTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred HHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776665 456777778888889998888777777777776 5566688888886 4445665666643
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=217.45 Aligned_cols=341 Identities=17% Similarity=0.181 Sum_probs=252.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 200 TAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF---SRTIEHMYLTFGLLAGIGLALSYVTAVVS 276 (805)
Q Consensus 200 ~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~---a~~~~~l~i~~R~l~G~g~g~~~~~~~~~ 276 (805)
.+.+++++.+|.++|+++.++++|++|||..++++.++..++.++..+ .+++.++++ .|++.|+..|........+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~-GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLIL-GRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHhHHHHHHHHHH
Confidence 467899999999999999999999999999999998888887777655 466777755 6999999999999999999
Q ss_pred Hhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHH-HHh-hccchHHHHHHHHHHHHHHHHHH-HhccCCchhhh-hhchHH
Q psy10046 277 IAFWFE-KKRGLACSLGSTGTGFGTTVYAPITS-YLI-SEYGWRGTVLLLSGTFFNLCVCG-AIMRDPEWWTL-EQNKEK 351 (805)
Q Consensus 277 l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~-~l~-~~~gWr~~f~i~~~~~~~~~i~~-~~~~~p~~~~~-~~~~~~ 351 (805)
+.|..| +.||..-.+...+..+|..++..++. .+. +...|++.+.+.++.+++.+++. ++.++|+|+.. +++.++
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~ 220 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEE 220 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHH
Confidence 999999 55999999999999999999977763 233 45569999998888776665555 45678999987 788899
Q ss_pred HHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy10046 352 DLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDP 431 (805)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (805)
+.++++.-++....+ ...|+..+..+.....
T Consensus 221 A~~sl~~y~G~~~~~-------~~~e~~~~e~~~~~~~------------------------------------------ 251 (485)
T KOG0569|consen 221 ARKALKFYRGKEDVE-------AEIEEMLREIEEEELE------------------------------------------ 251 (485)
T ss_pred HHHHHHHHhCCCcch-------hHHHHHHHHHHHhccc------------------------------------------
Confidence 999888744322110 1111111000000000
Q ss_pred CCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCC
Q psy10046 432 FTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSM 511 (805)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (805)
.+++
T Consensus 252 -------------------------------------------------~~~~--------------------------- 255 (485)
T KOG0569|consen 252 -------------------------------------------------KKKQ--------------------------- 255 (485)
T ss_pred -------------------------------------------------cccC---------------------------
Confidence 0000
Q ss_pred CCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccccccccccccccccccCCCcccc
Q psy10046 512 SPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILD 591 (805)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (805)
.
T Consensus 256 -----------------------------~-------------------------------------------------- 256 (485)
T KOG0569|consen 256 -----------------------------I-------------------------------------------------- 256 (485)
T ss_pred -----------------------------C--------------------------------------------------
Confidence 0
Q ss_pred cCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q psy10046 592 HHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLF 671 (805)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 671 (805)
.+..++..+-+|.+.+..+.+.....+
T Consensus 257 -----------------------------------------------------sl~~~~~~~~lR~~~~i~~~v~~~qq~ 283 (485)
T KOG0569|consen 257 -----------------------------------------------------SLRQLLKNPTLRRPLLIGIVVSFAQQF 283 (485)
T ss_pred -----------------------------------------------------cHHHHhcCcchhHHHHHHHHHHHHHHh
Confidence 011111123356666677777777788
Q ss_pred HhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhh---hh
Q psy10046 672 TWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFA---TN 748 (805)
Q Consensus 672 ~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~---~~ 748 (805)
.+.....+|...++++.|++..++.+.....++..++.++++.+++|| +|||.++..+..++.++.+++.... ..
T Consensus 284 sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~--~gRRpLll~~~~~~~~~~~~~~~~~~l~~~ 361 (485)
T KOG0569|consen 284 SGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR--LGRRPLLLISLSLMAVALLLMSIALFLSNS 361 (485)
T ss_pred cCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999 9999999999998888777664321 11
Q ss_pred H--H---HHHHHHHHHhhhhhhh-chhhhhhhhhccCccchhhhhHHHHHHHhhhhcc
Q psy10046 749 Y--W---ALLFTCLSFGIFFASN-FSCTPIILVELVPLDRFATAYGLTLLAQGIGNLV 800 (805)
Q Consensus 749 ~--~---~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~i 800 (805)
. | ..+++.+++.++++.. -|+.+-+.+|++|+..|+.+.++..++..+++++
T Consensus 362 ~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fi 419 (485)
T KOG0569|consen 362 FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFI 419 (485)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Confidence 1 1 2234444554444433 4567789999999999999999999988887764
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=219.52 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=113.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMA-VPLLLGPVASAFVEKFGCRSMT-IVAGIISGVGFVLSCFSRTIEHMYLTFGLLA 262 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~l-g~~ig~l~~G~LsDr~Grr~vl-ii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~ 262 (805)
+.+++.+++|++.++++++.+.+.+ ++.++++++++ +||+|||+.+ +.+.++.+++.++.+++++++.+++. +++.
T Consensus 38 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 115 (393)
T PRK15011 38 LSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFV-GVFL 115 (393)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHH
Confidence 3345678999999999999876655 66666655555 9999998864 55566667778888899999887664 4444
Q ss_pred HHHHHHHHHHHHHHHhhhcc-cch--hHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 263 GIGLALSYVTAVVSIAFWFE-KKR--GLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~p-~~r--g~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
|...+...+....++.++.+ +.| +...++...+..+|.++||++++++.+++|||+.|++.+++.++..++.++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 193 (393)
T PRK15011 116 SSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF 193 (393)
T ss_pred HHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence 44445566777677777665 334 3455788889999999999999999999999999999887777666655544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=251.86 Aligned_cols=330 Identities=14% Similarity=0.056 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---HHhcCcHHHHHHH
Q psy10046 183 GLLYIEFLNEFGASK--SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVL---SCFSRTIEHMYLT 257 (805)
Q Consensus 183 ~~~~p~i~~~~g~s~--~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~---~a~a~~~~~l~i~ 257 (805)
..+.+.+..+++.+. ...+++.+++.++++++++++|+++||+|||++++++.++.+++.++ +.++.+++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 108 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFA- 108 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-
Confidence 334455666777653 44789999999999999999999999999999999988766655544 344578888866
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc--------c-chHHHHHHHHHHH
Q psy10046 258 FGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE--------Y-GWRGTVLLLSGTF 327 (805)
Q Consensus 258 ~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~--------~-gWr~~f~i~~~~~ 327 (805)
+|++.|++.+...++..+++.+++| ++|++++++..++..+|.++|+++++++... + +|+|.+.+.+++.
T Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1146)
T PRK08633 109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAV 188 (1146)
T ss_pred HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Confidence 6999999999999999999999987 7799999999999999999999999999876 2 3455544444333
Q ss_pred HHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccc
Q psy10046 328 FNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKF 407 (805)
Q Consensus 328 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (805)
+++.++..+..+.... ....
T Consensus 189 ~~~~~~~~~~~~~~~~-~~~~----------------------------------------------------------- 208 (1146)
T PRK08633 189 AVLGLIFAYRLPKVPA-AAPE----------------------------------------------------------- 208 (1146)
T ss_pred HHHHHHHHhcCcCCCC-CCcc-----------------------------------------------------------
Confidence 3333222222211000 0000
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCC
Q psy10046 408 SSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSV 487 (805)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (805)
+. +. .
T Consensus 209 --------------~~-------------------------------~~---------------------------~--- 213 (1146)
T PRK08633 209 --------------VF-------------------------------DK---------------------------K--- 213 (1146)
T ss_pred --------------cc-------------------------------cc---------------------------c---
Confidence 00 00 0
Q ss_pred CCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccc
Q psy10046 488 ESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDF 567 (805)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (805)
....
T Consensus 214 ---------------------------------------------------~~~~------------------------- 217 (1146)
T PRK08633 214 ---------------------------------------------------KYLF------------------------- 217 (1146)
T ss_pred ---------------------------------------------------cccc-------------------------
Confidence 0000
Q ss_pred cccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHh
Q psy10046 568 LHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIV 647 (805)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (805)
....+..+
T Consensus 218 -----------------------------------------------------------------------~~~~~~~~- 225 (1146)
T PRK08633 218 -----------------------------------------------------------------------PKLLWRNL- 225 (1146)
T ss_pred -----------------------------------------------------------------------HHHHHHHH-
Confidence 00000000
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChh-hHHHHHHHHHHHHHhhhheeeeecCCCCccch
Q psy10046 648 GMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKE-EATSILSYIGVTNTVGMVALGWACDQPWLNVK 725 (805)
Q Consensus 648 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~-~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~ 725 (805)
..+++++.++.+++..++.+........++|.|+.+ .|++.. .++++.+..+++.+++.+++|++.|| ++++
T Consensus 226 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r--~~~~ 299 (1146)
T PRK08633 226 ----KLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR--HIEL 299 (1146)
T ss_pred ----HHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ceEc
Confidence 124566777766666666555556666778888775 799988 89999999999999999999999999 8888
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 726 KTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 726 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
+++.++.++.+++++++. ...+.+.++++.+++|++.+...+...+++.+.+|.+.+|+++|+.+++..+|+++++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~ 376 (1146)
T PRK08633 300 GLVPLGALGLALSLFLLP-TAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLA 376 (1146)
T ss_pred cchhHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 887777777777666655 34466667777888899999888888999999999999999999999999888866543
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=234.17 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=149.2
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q psy10046 190 LNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALS 269 (805)
Q Consensus 190 ~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~ 269 (805)
.+.+..+.....+..+++++|.++|++++|+++|++|||+++++++++..++.+++++++|++.+++ +|++.|++.++.
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~-~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLI-FRFLSGFFGSGP 188 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHhhccch
Confidence 3556678889999999999999999999999999999999999999999999999999999999966 799999999999
Q ss_pred HHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc-cCCchhhhhh
Q psy10046 270 YVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM-RDPEWWTLEQ 347 (805)
Q Consensus 270 ~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~-~~p~~~~~~~ 347 (805)
...+..++.|+.+ ++|+.++.+ ..+...|+.+++++++++.. +|||.+|+..+..++.+++.++. +.|+|+..++
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 9999999998885 889999999 88888888899999999887 89999999999888877776665 7899999999
Q ss_pred chHHHHHhhhc
Q psy10046 348 NKEKDLKSIKG 358 (805)
Q Consensus 348 ~~~~~~~~l~~ 358 (805)
+.+++.+.+++
T Consensus 266 ~~~~a~~~l~~ 276 (521)
T KOG0255|consen 266 RIDEAIKILKK 276 (521)
T ss_pred chHHHHHHHHH
Confidence 99888876654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=249.42 Aligned_cols=314 Identities=11% Similarity=0.016 Sum_probs=228.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHH---HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 198 SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIV---AGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAV 274 (805)
Q Consensus 198 ~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii---~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~ 274 (805)
...++..+++.++++++.+++|+++||+|||+++.+ ..+++++..+++.+..+++++++ +|+++|++.+...++..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~-~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFA-ALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhhchHHH
Confidence 457888999999999999999999999999997533 22333333333444588988866 69999999999999999
Q ss_pred HHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHH
Q psy10046 275 VSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDL 353 (805)
Q Consensus 275 ~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~ 353 (805)
+++.++++ ++|++++|+..++..+|.++||+++|++....||++.|++.+++.++.+++.+++.++... ...
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------ 203 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA-APD------ 203 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCC------
Confidence 99998887 7799999999999999999999999999999999999955444444444333333111000 000
Q ss_pred HhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccccccccccccccccccccccccccCCCCCCCC
Q psy10046 354 KSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFT 433 (805)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (805)
T Consensus 204 -------------------------------------------------------------------------------- 203 (1140)
T PRK06814 204 -------------------------------------------------------------------------------- 203 (1140)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCC
Q psy10046 434 TPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSP 513 (805)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (805)
. ..
T Consensus 204 --------~------------~~--------------------------------------------------------- 206 (1140)
T PRK06814 204 --------L------------KI--------------------------------------------------------- 206 (1140)
T ss_pred --------C------------ee---------------------------------------------------------
Confidence 0 00
Q ss_pred CCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccccccccccccccccccCCCcccccC
Q psy10046 514 PGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHH 593 (805)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (805)
...
T Consensus 207 -------------------------~~~---------------------------------------------------- 209 (1140)
T PRK06814 207 -------------------------DRN---------------------------------------------------- 209 (1140)
T ss_pred -------------------------ccc----------------------------------------------------
Confidence 000
Q ss_pred ccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHh
Q psy10046 594 LRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTW 673 (805)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 673 (805)
...+....+ ..+.+++.++.+++..++.++.
T Consensus 210 --------------------------------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 240 (1140)
T PRK06814 210 --------------------------------------------IIRSTITLL-----KYAKADKRIWLAILGISWFWLV 240 (1140)
T ss_pred --------------------------------------------hHHHHHHHH-----HHHhcCchHHHHHHHHHHHHHH
Confidence 000000000 1345677788888877777766
Q ss_pred hhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhh-------
Q psy10046 674 FVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLF------- 745 (805)
Q Consensus 674 ~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~------- 745 (805)
+..+..++|.|+++ .|.++..++++.+.++++.++|.++.|+++++ ..+++.+.++.++.+++.+.+.+.
T Consensus 241 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (1140)
T PRK06814 241 GAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG--RITLLYVPIGALLMGLFGLDLAFASSSVPAE 318 (1140)
T ss_pred HHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC--ceeeeeehHHHHHHHHHHHHHHhcccccccc
Confidence 67777789999986 69999999999999999999999999999987 554444444444443333322211
Q ss_pred ------------hhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 746 ------------ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 746 ------------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
..+.+.+++..+++|++.+...+...+++.+.+|++.+|.++|+.+++..+|..+|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~ 389 (1140)
T PRK06814 319 PAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTII 389 (1140)
T ss_pred cccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHH
Confidence 14556667778888999998888899999999999999999999999999988887653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=222.41 Aligned_cols=153 Identities=11% Similarity=0.154 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChHH-HHHHHHHHHHHHHHHHhc---CcH
Q psy10046 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF-----GCRSM-TIVAGIISGVGFVLSCFS---RTI 251 (805)
Q Consensus 181 ~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~-----Grr~v-lii~~~l~~i~~i~~a~a---~~~ 251 (805)
..+..+|.+.++.|.+..+++.+ +...+.+ ++.+++|+++||+ |||+. ++++.++.+++.+++++. .++
T Consensus 30 ~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l 107 (491)
T PRK11010 30 LTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQL 107 (491)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 44555688899999999999986 4444444 5899999999999 99885 667777777777777775 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh-ccchHHHHHHHHHHHHH
Q psy10046 252 EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS-EYGWRGTVLLLSGTFFN 329 (805)
Q Consensus 252 ~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-~~gWr~~f~i~~~~~~~ 329 (805)
+.+++ .+++.|++.+...+...+++.+++| ++|+++.++...+..+|.++++.+++++.+ ..|||+.|++.+++.++
T Consensus 108 ~~l~~-~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll 186 (491)
T PRK11010 108 RWLAA-LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIP 186 (491)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 67755 5899999999888899999999997 789999999999999999999999999998 57999999998877666
Q ss_pred HHHHHHh
Q psy10046 330 LCVCGAI 336 (805)
Q Consensus 330 ~~i~~~~ 336 (805)
..+..++
T Consensus 187 ~~l~~~~ 193 (491)
T PRK11010 187 CIIATLL 193 (491)
T ss_pred HHHHHHh
Confidence 6555444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=198.29 Aligned_cols=340 Identities=19% Similarity=0.177 Sum_probs=266.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q psy10046 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVG 241 (805)
Q Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~ 241 (805)
|+.+..+.++.+-.=-...+.+++++.+.+++|+|.+.+|+++++..+++++.+++..++..|+|..+.+.+++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55555555554433334467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc-chHHHH
Q psy10046 242 FVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY-GWRGTV 320 (805)
Q Consensus 242 ~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~-gWr~~f 320 (805)
.++-... +...++.+ -++.|+|.+...+..+.++-+.|||+-+..+|+|.....+|.++++.+.-.+.++. |||+.+
T Consensus 91 ~~iR~~~-~~~~L~~g-t~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLG-TLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHH-HHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9998887 55566564 68999999999999999999999999999999999999999999999998888887 799999
Q ss_pred HHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccc
Q psy10046 321 LLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATEL 400 (805)
Q Consensus 321 ~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (805)
.+.++.+++.+++++-.. .+ .+....
T Consensus 169 ~~WAl~allAl~~WlPq~-~r-----~~~~~~------------------------------------------------ 194 (395)
T COG2807 169 GFWALLALLALLIWLPQA-LR-----EQAASI------------------------------------------------ 194 (395)
T ss_pred HHHHHHHHHHHHHHhhhc-cc-----cccccc------------------------------------------------
Confidence 998888877766554321 10 000000
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCc
Q psy10046 401 NAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKP 480 (805)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (805)
+
T Consensus 195 -----------------------------------------~-------------------------------------- 195 (395)
T COG2807 195 -----------------------------------------A-------------------------------------- 195 (395)
T ss_pred -----------------------------------------c--------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcC
Q psy10046 481 LVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNG 560 (805)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (805)
. +
T Consensus 196 ---~--------------------------------------------------------------~------------- 197 (395)
T COG2807 196 ---T--------------------------------------------------------------K------------- 197 (395)
T ss_pred ---c--------------------------------------------------------------c-------------
Confidence 0 0
Q ss_pred CCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchh
Q psy10046 561 GHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMD 640 (805)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (805)
T Consensus 198 -------------------------------------------------------------------------------- 197 (395)
T COG2807 198 -------------------------------------------------------------------------------- 197 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCC
Q psy10046 641 DARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQP 720 (805)
Q Consensus 641 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~ 720 (805)
..-..+++|+|.-|.+.+..-++...+++...|+|.++.++|+|+.+++.+++...+.+++..++..++.+|.
T Consensus 198 -------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~ 270 (395)
T COG2807 198 -------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS 270 (395)
T ss_pred -------cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000146788888999888889999999999999999999999999999999999999999999999999972
Q ss_pred CccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccC-ccchhhhhHHHHHHHhhhhc
Q psy10046 721 WLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVP-LDRFATAYGLTLLAQGIGNL 799 (805)
Q Consensus 721 ~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~~~a~gl~~~~~~ig~~ 799 (805)
.++|...+...+++.++.+.+.+...+.. +.+++++|++.|..|++....+..... ++..+.-.|+...++.+=+.
T Consensus 271 -~n~r~~~~~~~~~~l~G~~G~~~~P~~~~--~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa 347 (395)
T COG2807 271 -KNQRPLVVLALLLMLVGLVGLLLAPGQLP--ILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAA 347 (395)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHh
Confidence 46666666666666665555542222222 223688999999999988877776654 55656666666666666666
Q ss_pred cCCCC
Q psy10046 800 VGPPL 804 (805)
Q Consensus 800 igp~i 804 (805)
+||.+
T Consensus 348 ~GP~l 352 (395)
T COG2807 348 FGPWL 352 (395)
T ss_pred hhhhh
Confidence 77764
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=219.20 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 198 SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSI 277 (805)
Q Consensus 198 ~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l 277 (805)
.+.+|+.+++.++.+++.+++|+++|++|||+.++++.+++.++.+++++++|+.++++ .|++.|+|.|........++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~-GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIV-GRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHhccchhhhhhcchhhH
Confidence 35589999999999999999999999999999999999999999999999999999977 59999999999999999999
Q ss_pred hhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHh-ccCCchhhhhhchHHHH
Q psy10046 278 AFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE--YGWRGTVLLLSGTFFNLCVCGAI-MRDPEWWTLEQNKEKDL 353 (805)
Q Consensus 278 ~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~--~gWr~~f~i~~~~~~~~~i~~~~-~~~p~~~~~~~~~~~~~ 353 (805)
+|..| +.||...++...+..+|..++..+ +...++ .+||..+++..+.+++..+..++ .+.|+|+..+++.+++.
T Consensus 168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~-~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~ 246 (513)
T KOG0254|consen 168 SEIAPAHIRGTLVSLYQLFITIGILLGYCI-NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAK 246 (513)
T ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHH-hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHH
Confidence 99998 579999999999999999888444 444443 48999988888877777666333 36788999989988888
Q ss_pred Hhhhc
Q psy10046 354 KSIKG 358 (805)
Q Consensus 354 ~~l~~ 358 (805)
+.++.
T Consensus 247 ~~l~~ 251 (513)
T KOG0254|consen 247 RSLKR 251 (513)
T ss_pred HHHHH
Confidence 87765
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=201.06 Aligned_cols=335 Identities=16% Similarity=0.156 Sum_probs=262.7
Q ss_pred HHHHHHhHHHH-HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH-
Q psy10046 169 FFINMAGDGIA-FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSC- 246 (805)
Q Consensus 169 ~~~~~~~~~~~-~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a- 246 (805)
+.+.|+.++.. ....+++|.+++.|+++..+++++...++.||.+++++.|.+.+|+|+|..+++++.++++++++..
T Consensus 18 ~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p 97 (422)
T COG0738 18 LTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP 97 (422)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 34444556665 4468889999999999999999999999999999999999999999999999999999999999874
Q ss_pred --hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc----------
Q psy10046 247 --FSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE---------- 313 (805)
Q Consensus 247 --~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~---------- 313 (805)
...++..++. .-|+.|.|.+...+++..+++...+ ++-...+++.+.+.++|.+++|++++.++.+
T Consensus 98 Aa~~~~y~~FL~-~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 98 AASSKSYGFFLV-ALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred hhhhhhHHHHHH-HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence 5567777755 4699999999999999999998876 5678889999999999999999999988762
Q ss_pred ---------cchHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHh
Q psy10046 314 ---------YGWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLE 384 (805)
Q Consensus 314 ---------~gWr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (805)
..|+++|...+.+.+++.+.....+.|....
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~---------------------------------------- 216 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV---------------------------------------- 216 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------------------------------
Confidence 2478888888877777776666655441000
Q ss_pred cCCCccchhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhc
Q psy10046 385 SGVTPDFIETSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQK 464 (805)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (805)
. .|+ ..+
T Consensus 217 --------------------------------------~----------------~~~-----------~~~-------- 223 (422)
T COG0738 217 --------------------------------------A----------------APS-----------LGA-------- 223 (422)
T ss_pred --------------------------------------c----------------ccc-----------ccc--------
Confidence 0 000 000
Q ss_pred hhhhccccCCCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccc
Q psy10046 465 TLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLK 544 (805)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (805)
.
T Consensus 224 --------------------------------------------------------------------------~----- 224 (422)
T COG0738 224 --------------------------------------------------------------------------S----- 224 (422)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred cccccccchhhhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheecc
Q psy10046 545 HLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISG 624 (805)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (805)
T Consensus 225 -------------------------------------------------------------------------------- 224 (422)
T COG0738 225 -------------------------------------------------------------------------------- 224 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHH
Q psy10046 625 ILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIG 703 (805)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~ 703 (805)
+.....+++++|+++...+..|++...-.....|++.|+.+ .|.+..++.+.++.++
T Consensus 225 ----------------------~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~ 282 (422)
T COG0738 225 ----------------------GSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFW 282 (422)
T ss_pred ----------------------ccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 00001367889999999999999999999999999999998 8999999999999999
Q ss_pred HHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccch
Q psy10046 704 VTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRF 783 (805)
Q Consensus 704 i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~ 783 (805)
++.++||+++.++..| ++..+.+.+..++..+.++... ..++. ..+...++.|++.+..||.......+..| ++
T Consensus 283 ~~~~vGRFig~~lm~~--~~~~k~Laf~a~~~ill~~~~~-l~~g~-v~~~~l~~ig~F~simfPTIfslal~~l~-~~- 356 (422)
T COG0738 283 VGFMVGRFIGSALMSR--IKPEKYLAFYALIAILLLLAVA-LIGGV-VALYALFLIGLFNSIMFPTIFSLALKNLG-EH- 356 (422)
T ss_pred HHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHH-HhcCh-HHHHHHHHHHHHhHHHHHHHHHHHHhccC-cc-
Confidence 9999999999999998 9988888887776666665555 34443 34556677899999999999999999998 33
Q ss_pred hhhhHHHHHHHhhhhccCCCC
Q psy10046 784 ATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 784 ~~a~gl~~~~~~ig~~igp~i 804 (805)
....|.......+|+++.|++
T Consensus 357 ts~~s~~l~maivGGAiiP~l 377 (422)
T COG0738 357 TSVGSGLLVMAIVGGAIIPPL 377 (422)
T ss_pred ccccceeeeeheecchHHHHH
Confidence 333344444455666666653
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=212.77 Aligned_cols=149 Identities=17% Similarity=0.266 Sum_probs=115.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCCh--------hhHHHHHHHHHHHHHhhhheeeeecCCCCccch
Q psy10046 654 MFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSK--------EEATSILSYIGVTNTVGMVALGWACDQPWLNVK 725 (805)
Q Consensus 654 ~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~--------~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~ 725 (805)
++|++.++.+.+..++..........+++.++++.|.++ ...+++.+...+..+++.++.|+++|| +++|
T Consensus 204 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr--~g~r 281 (418)
T TIGR00889 204 LFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR--FGIK 281 (418)
T ss_pred HhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--hCcH
Confidence 456666666666666655555556677788888877654 455788888889999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHH-HHHhhhhccC
Q psy10046 726 KTYAACLIGCGVSTALMPLFAT---NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTL-LAQGIGNLVG 801 (805)
Q Consensus 726 ~~~~~~~~~~~i~~l~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~-~~~~ig~~ig 801 (805)
+++.++.++.++.++++..... ..+.+++..++.|++.+...+....++.+.+|++.+++++|+.+ +..++|+++|
T Consensus 282 ~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iG 361 (418)
T TIGR00889 282 KVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLG 361 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999888877655542221 23445666778888888878888889999999999999999997 6788999998
Q ss_pred CCC
Q psy10046 802 PPL 804 (805)
Q Consensus 802 p~i 804 (805)
|++
T Consensus 362 p~l 364 (418)
T TIGR00889 362 YIL 364 (418)
T ss_pred HHH
Confidence 875
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-21 Score=215.89 Aligned_cols=147 Identities=12% Similarity=0.017 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh----cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHH
Q psy10046 655 FLELHFLLVSISTILLFTWFVIPYFYLTDFVTN----QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAA 730 (805)
Q Consensus 655 l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~----~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~ 730 (805)
+|+|.++.+.+..++....+.....++|.|+.+ .+.+....+++.+...++.+++.+++|++.|| +++++.+.+
T Consensus 220 l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~~~~ 297 (420)
T PRK09528 220 LKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR--IGAKNALLL 297 (420)
T ss_pred ccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcchhhHH
Confidence 344444443333333323333333344555443 46676777888888889999999999999999 999999888
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHH-HHHHHhhhhccCCCC
Q psy10046 731 CLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGL-TLLAQGIGNLVGPPL 804 (805)
Q Consensus 731 ~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl-~~~~~~ig~~igp~i 804 (805)
+.++.++..+++. ..++.+.+++..++.|++.+........++.+.+|++.+++.+++ +++...+|+++||++
T Consensus 298 ~~~l~~~~~~l~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~ 371 (420)
T PRK09528 298 AGTIMAVRIIGSG-FATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL 371 (420)
T ss_pred HHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence 8888777766665 355667677777777887777777777788899999999988776 677788888888764
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=208.24 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=139.2
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q psy10046 191 NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSY 270 (805)
Q Consensus 191 ~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~ 270 (805)
.+++-+.+++|++++.+.+...+..++.|.+.||+|+|..+++|+++..+.+++.++.++++.+++ .|.++|+|.++..
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~v-AR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFV-ARSLQGVGSAFAD 177 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHH-HHHHhhhhHHHHH
Confidence 345667889999999999999999999999999999999999999999999999999999999977 4999999999999
Q ss_pred HHHHHHHhhhcc--cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccCC
Q psy10046 271 VTAVVSIAFWFE--KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMRDP 340 (805)
Q Consensus 271 ~~~~~~l~~~~p--~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~~~p 340 (805)
+.+.+++++.|| ++|+++||+.-.+.++|-.+||++||++.+..|.+.+|++++++.++-.++.++..+|
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 999999999998 3589999999999999999999999999999999999999999999888888887665
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=206.25 Aligned_cols=155 Identities=17% Similarity=0.056 Sum_probs=112.1
Q ss_pred HHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---HhcC----cHH
Q psy10046 181 SFGLLYI-EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLS---CFSR----TIE 252 (805)
Q Consensus 181 ~~~~~~p-~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~---a~a~----~~~ 252 (805)
.+.+++| ++.+++|.+..+.+++.+++.+++.++++++|+++||+|||+++++++++++++.... .+.+ +..
T Consensus 20 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (396)
T TIGR00882 20 AYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNIL 99 (396)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334444 4456799999999999999999999999999999999999999988776665544332 1222 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q psy10046 253 HMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCV 332 (805)
Q Consensus 253 ~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i 332 (805)
...+..|++.|++.+...+....+..+.. ++++..++.......+|.++||++++.+.+ .||++.|++.+++.++..+
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~ 177 (396)
T TIGR00882 100 VGAIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILML 177 (396)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHH
Confidence 22232477778777776666666555432 334556777778889999999999988765 5999999998877776665
Q ss_pred HHHhc
Q psy10046 333 CGAIM 337 (805)
Q Consensus 333 ~~~~~ 337 (805)
+.++.
T Consensus 178 ~~~~~ 182 (396)
T TIGR00882 178 LLMFA 182 (396)
T ss_pred HHHHh
Confidence 55443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=197.18 Aligned_cols=159 Identities=12% Similarity=0.127 Sum_probs=138.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSK-TAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIIS 238 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~-~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~ 238 (805)
|++..+++|.+..+ .-.....+...|++.+++|++..+ .|.+.+++..+|+++.++.|+++||+|.|+++.++++.+
T Consensus 25 W~~~~~~lC~fGF~--~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~W 102 (511)
T TIGR00806 25 WRVLVLYLCFYGFM--AQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSF 102 (511)
T ss_pred hhHHHHHHHHHHHH--HHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 44444434433322 334466777889999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchH
Q psy10046 239 GVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWR 317 (805)
Q Consensus 239 ~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr 317 (805)
++..++.++++++..+.+ +|++.|++.|+.+ +...++..|+| ++|+++.+++.++..+|.+++++++++ +..+|||
T Consensus 103 sl~t~L~~fa~Sl~~L~i-~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr 179 (511)
T TIGR00806 103 VCVWLLLLLGTSVWHMQL-MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWI 179 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCch
Confidence 999999999999999866 6999999999999 99999999998 789999999999999999999999999 5578999
Q ss_pred HHHHHH
Q psy10046 318 GTVLLL 323 (805)
Q Consensus 318 ~~f~i~ 323 (805)
+.+.+.
T Consensus 180 ~y~~Ln 185 (511)
T TIGR00806 180 SYSTLN 185 (511)
T ss_pred hHHHHH
Confidence 866544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=207.22 Aligned_cols=146 Identities=14% Similarity=0.202 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 181 ~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
..+.+..++.+++|++..+++++.+.|.+...+..+++|+++|| +|||++++++.++++++.++++++.+...++++.|
T Consensus 33 ~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~ 112 (489)
T PRK10207 33 VQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIAL 112 (489)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 34455567788899999999999999999999999999999999 99999999999999999999999877555443469
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-c--chhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHH
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-K--KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGT 326 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~--~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~ 326 (805)
+++|+|.|...+...+++.+++| + +|+.++++++.+.++|.++||.+++++.++.|||+.|++.++.
T Consensus 113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 99999999999999999999886 3 3577999999999999999999999999999999999986553
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-19 Score=198.95 Aligned_cols=150 Identities=12% Similarity=0.169 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CChH-HHHHHHHHHHHHHHHHHhc---CcHH
Q psy10046 182 FGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF-----GCRS-MTIVAGIISGVGFVLSCFS---RTIE 252 (805)
Q Consensus 182 ~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~-----Grr~-vlii~~~l~~i~~i~~a~a---~~~~ 252 (805)
....+|.+.++.|++.+++|++..+... .+..+++|+++||+ |||+ +++++.++.+++.++.++. .+++
T Consensus 18 ~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~ 95 (402)
T PRK11902 18 TSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALW 95 (402)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 3445688889999999999999777765 58899999999999 8765 7888888888887777776 3466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Q psy10046 253 HMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE-YGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 253 ~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~-~gWr~~f~i~~~~~~~~ 330 (805)
.+++ +.++.+++.+...+...+++.+++| ++|+++.++...+..+|.++++.+++.+.+. .|||+.|++.+++.++.
T Consensus 96 ~l~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~ 174 (402)
T PRK11902 96 PLAG-LAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAG 174 (402)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 6644 4677788888888899999999998 5699999999999999999999999999885 59999999988776655
Q ss_pred HHHH
Q psy10046 331 CVCG 334 (805)
Q Consensus 331 ~i~~ 334 (805)
.+..
T Consensus 175 ~l~~ 178 (402)
T PRK11902 175 ALTT 178 (402)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=219.78 Aligned_cols=158 Identities=19% Similarity=0.170 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC---------
Q psy10046 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR--------- 249 (805)
Q Consensus 179 ~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~--------- 249 (805)
....+..++.+.++|+++..+.|++.+.+.++++++.++.|++.||+|||+++.+++++++++++++++.+
T Consensus 49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 34456677999999999999999999999999999999999999999999999999999999999988752
Q ss_pred ----------------------------------------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhH
Q psy10046 250 ----------------------------------------T-IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGL 287 (805)
Q Consensus 250 ----------------------------------------~-~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~ 287 (805)
+ .+.++++.|+++|+|.+..++.+.+++.+++| ++|++
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~ 208 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL 208 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence 1 22233446999999999999999999999997 77999
Q ss_pred HHHHHHHHhhHHHhhHHHHHHHHhhcc----------------------chHHHHHHHHHHHHHHHHHHHh
Q psy10046 288 ACSLGSTGTGFGTTVYAPITSYLISEY----------------------GWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 288 a~gi~~~~~~lG~~lgp~i~~~l~~~~----------------------gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
+++++..+..+|+++|+++++++.+.+ +|+..|++.+++.++.++++++
T Consensus 209 ~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 209 YIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988643 2667788877777666554443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-20 Score=207.81 Aligned_cols=324 Identities=13% Similarity=0.128 Sum_probs=232.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCCh-HHHHHHHHHHHHHHHHHHhcCcH------HH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK----FGCR-SMTIVAGIISGVGFVLSCFSRTI------EH 253 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr----~Grr-~vlii~~~l~~i~~i~~a~a~~~------~~ 253 (805)
+.+++.+++|++..+++++.++..+..++..|+.|+++|| +||| +.++++.++++++.+++.+.++. ..
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4566777899999999999999999999999999999997 7874 46778888888888887776542 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHhhHHHhhHHHHHHHHhh-------ccchHHHHHHHH
Q psy10046 254 MYLTFGLLAGIGLALSYVTAVVSIAFWF--EKKRGLACSLGSTGTGFGTTVYAPITSYLIS-------EYGWRGTVLLLS 324 (805)
Q Consensus 254 l~i~~R~l~G~g~g~~~~~~~~~l~~~~--p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-------~~gWr~~f~i~~ 324 (805)
+ ++.+++.+++.+....+..++..+.. +++|++..++...+..+|..+++.+.+.+.. ..|||+.+++.+
T Consensus 102 ~-~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 102 A-YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred H-HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 3 33567788888776666677777665 3789999999888888888777776655542 468999999888
Q ss_pred HHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccccc
Q psy10046 325 GTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAET 404 (805)
Q Consensus 325 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (805)
++.++..++.++..+.+. ++ .
T Consensus 181 ~l~~~~~~~~~~~~~e~~-------~~--~-------------------------------------------------- 201 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERY-------SE--I-------------------------------------------------- 201 (437)
T ss_pred HHHHHHHHHHHcCCEecC-------CC--C--------------------------------------------------
Confidence 877766655544321100 00 0
Q ss_pred cccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCccccc
Q psy10046 405 CKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKN 484 (805)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (805)
+. . .+
T Consensus 202 ------------------------------------~~----------~-~~---------------------------- 206 (437)
T TIGR00792 202 ------------------------------------PK----------N-IE---------------------------- 206 (437)
T ss_pred ------------------------------------Cc----------c-cc----------------------------
Confidence 00 0 00
Q ss_pred CCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCcc
Q psy10046 485 HSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRF 564 (805)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (805)
.+
T Consensus 207 ------------------------------------------------------~~------------------------ 208 (437)
T TIGR00792 207 ------------------------------------------------------KK------------------------ 208 (437)
T ss_pred ------------------------------------------------------cC------------------------
Confidence 00
Q ss_pred ccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHH
Q psy10046 565 QDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARE 644 (805)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (805)
.+.++
T Consensus 209 ---------------------------------------------------------------------------~~~~~ 213 (437)
T TIGR00792 209 ---------------------------------------------------------------------------LSLKQ 213 (437)
T ss_pred ---------------------------------------------------------------------------CCHHH
Confidence 00000
Q ss_pred HHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCcc
Q psy10046 645 LIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLN 723 (805)
Q Consensus 645 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~g 723 (805)
.+ ..++++|.++.+++..++...+......+.+.|.+. .+ +....+.+.....++.+++.+++++++|| ++
T Consensus 214 ~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r--~g 285 (437)
T TIGR00792 214 IF-----KALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK--FG 285 (437)
T ss_pred HH-----HHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH--hC
Confidence 00 135678888887777777666665555555555543 34 45566677777789999999999999999 99
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccC-------ccchhhhhHHHHHHHhh
Q psy10046 724 VKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVP-------LDRFATAYGLTLLAQGI 796 (805)
Q Consensus 724 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~~~a~gl~~~~~~i 796 (805)
+|+++.++.++.+++++.+.+..++.+.+++..++.|++.+...+..+.++++..+ .+..|.++|+.+++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 365 (437)
T TIGR00792 286 RKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL 365 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH
Confidence 99998888877777666655333455566667778888888888888888888765 56689999999999999
Q ss_pred hhccCCCC
Q psy10046 797 GNLVGPPL 804 (805)
Q Consensus 797 g~~igp~i 804 (805)
|..+|+.+
T Consensus 366 g~~lg~~i 373 (437)
T TIGR00792 366 GQALAGFL 373 (437)
T ss_pred HHHHHHHH
Confidence 99888754
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=200.68 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=130.6
Q ss_pred HHHHHH-HHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 184 LLYIEF-LNE--FGASKSKTAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 184 ~~~p~i-~~~--~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
..+|.+ .++ +|++..+++++.+++.+++.++++++|+++|| +|||+++++++++++++.++.+++++++.+++ .|
T Consensus 31 ~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 109 (475)
T TIGR00924 31 GILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFY-GL 109 (475)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHH-HH
Confidence 334444 445 89999999999999999999999999999999 89999999999999999999999988887766 58
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-c---chhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-K---KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCG 334 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~---~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~ 334 (805)
++.|+|.|...+...+++++++| + +|+.++++++.+.++|.++||++++++.+++||++.|++.++..++..+..
T Consensus 110 ~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 110 GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 99999999988999999999886 3 388899999999999999999999999999999999999876554443333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-18 Score=191.35 Aligned_cols=157 Identities=16% Similarity=0.056 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHH--HHHHHHHHHHHHHHH-HHHHhhhCChHHHHHHHHHH-HHHHHHHH---hcCc-H
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWI--GSLFMAVPLLLGPVA-SAFVEKFGCRSMTIVAGIIS-GVGFVLSC---FSRT-I 251 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~--~s~~~lg~~ig~l~~-G~LsDr~Grr~vlii~~~l~-~i~~i~~a---~a~~-~ 251 (805)
....+++|.+.++.|.+..++|+. .++..+...+.++++ ++.+||+|||+.+++.+.+. ++.....+ ...+ .
T Consensus 18 ~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 97 (390)
T TIGR02718 18 GLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGA 97 (390)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhH
Confidence 345567899999999999999997 456677777777777 44789999998876655332 22222222 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 252 EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 252 ~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
.+++. .-++.+++.+...+...++..+..+ ++++...++...+..+|.++|+.+.+++.+.+|||..|++.+++.++.
T Consensus 98 ~~~~~-~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~ 176 (390)
T TIGR02718 98 GWAVG-LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLAS 176 (390)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 23323 3345556666666777777777766 567888888888889999999999999999999999999998877766
Q ss_pred HHHHHhc
Q psy10046 331 CVCGAIM 337 (805)
Q Consensus 331 ~i~~~~~ 337 (805)
.+..++.
T Consensus 177 ~~~~~~~ 183 (390)
T TIGR02718 177 LVCVLWL 183 (390)
T ss_pred HHHHHHc
Confidence 6555444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=195.38 Aligned_cols=323 Identities=15% Similarity=0.132 Sum_probs=240.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS-----RTIEHMYLTFG 259 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a-----~~~~~l~i~~R 259 (805)
..+.+..+..-|+..++++.++..+...+..+++|.++||+.||++++++-++.++..++.++. .+.+.+++ +-
T Consensus 32 a~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~-~~ 110 (524)
T PF05977_consen 32 ALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLI-LT 110 (524)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHH-HH
Confidence 3455666777789999999999999999999999999999999999999887766554443321 46667655 57
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcc
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMR 338 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~~ 338 (805)
++.|++.+...++..+++.+..| ++...+.++..+..++..++||.++|.++...|-.+.|++.++..++.+++.+..+
T Consensus 111 fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 111 FLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999988 56899999999999999999999999999999999999988776555444433332
Q ss_pred CCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccccccccccccccccccc
Q psy10046 339 DPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPTYIR 418 (805)
Q Consensus 339 ~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (805)
++.. .+.... +
T Consensus 191 ~~~~--~~~~~~---e---------------------------------------------------------------- 201 (524)
T PF05977_consen 191 PPPP--PSSLPR---E---------------------------------------------------------------- 201 (524)
T ss_pred cccc--ccccch---h----------------------------------------------------------------
Confidence 2100 000000 0
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCcccc
Q psy10046 419 NNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVS 498 (805)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (805)
T Consensus 202 -------------------------------------------------------------------------------- 201 (524)
T PF05977_consen 202 -------------------------------------------------------------------------------- 201 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCcccccccccccccccc
Q psy10046 499 AGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDT 578 (805)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (805)
+.
T Consensus 202 ------------------------------------------~~------------------------------------ 203 (524)
T PF05977_consen 202 ------------------------------------------RF------------------------------------ 203 (524)
T ss_pred ------------------------------------------hh------------------------------------
Confidence 00
Q ss_pred ccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhhccccchhhH
Q psy10046 579 NLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLEL 658 (805)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 658 (805)
..+.++.++ -+.++|
T Consensus 204 ------------------------------------------------------------~~~l~~G~r-----yv~~~~ 218 (524)
T PF05977_consen 204 ------------------------------------------------------------FSALREGLR-----YVRSSP 218 (524)
T ss_pred ------------------------------------------------------------hhhHHHHHH-----HHhcch
Confidence 000000000 011223
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHH
Q psy10046 659 HFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGV 737 (805)
Q Consensus 659 ~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i 737 (805)
.+...++..++..+....+...+|.+.++ .|.++...|++.+.++++.++|.++.+++.++ +++.+++..+.++.++
T Consensus 219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~--~~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR--LSSRRLVLLASLLFAL 296 (524)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCcchhhHHHHHHHHH
Confidence 33333332333333333344568888875 78999999999999999999999999999988 8888888888888888
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 738 STALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 738 ~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
+++.+. ..++.+...+..++.|++.........+.+....|.+.+|.+++++.++...+..+|..
T Consensus 297 ~~~~la-l~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsl 361 (524)
T PF05977_consen 297 ALLLLA-LSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSL 361 (524)
T ss_pred HHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 887777 56677777888888999988888888899999999999999999998877776666543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=184.89 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=104.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 195 ASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAV 274 (805)
Q Consensus 195 ~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~ 274 (805)
.+..-.|.+.+.|.++..+.++.||.++|++|||++++++++..++..++.+++.|+..+ ++.|++.|+.-|- ....-
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~af-v~aR~l~Gi~kgn-l~v~r 142 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAF-VLARFLGGIFKGN-LSVIR 142 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhccCc-hHHHH
Confidence 345568999999999999999999999999999999999999999999999999999555 5459999998775 56677
Q ss_pred HHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh
Q psy10046 275 VSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS 312 (805)
Q Consensus 275 ~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~ 312 (805)
+++++.++ ++|+++|+.+...+++|.++||.|||++..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 88898886 889999999999999999999999999987
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=191.93 Aligned_cols=148 Identities=18% Similarity=0.255 Sum_probs=123.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTIVAGIISGVGFVLSCFSR-TIEHMYLTFGLLA 262 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vlii~~~l~~i~~i~~a~a~-~~~~l~i~~R~l~ 262 (805)
+..++.+++|++..+++++.+.+.+......+++|+++|| +|||+.++++.++++++.++++++. +.+.+++ .|++.
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~-~~~l~ 122 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYM-GMATI 122 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHH
Confidence 4456678999999999999888887777777899999999 5999999999999999999998875 4444544 58999
Q ss_pred HHHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 263 GIGLALSYVTAVVSIAFWFEKK---RGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~p~~---rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
|+|.|...+...+++.+++|++ |+.++++++.+.++|.++||++++++.+++|||+.|++.++..++.++.
T Consensus 123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~ 196 (500)
T PRK09584 123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVN 196 (500)
T ss_pred HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 9999988888888999998732 4568899999999999999999999999999999999877655444433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-23 Score=237.31 Aligned_cols=160 Identities=17% Similarity=0.248 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 198 SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR---TIEHMYLTFGLLAGIGLALSYVTAV 274 (805)
Q Consensus 198 ~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~---~~~~l~i~~R~l~G~g~g~~~~~~~ 274 (805)
.+.++..+...+|..+|.+++|.++||+|||++++++.++..++.++.++++ +++.+++ .|++.|++.|+..+...
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLI-GRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 3578999999999999999999999999999999999999999999999999 9999866 69999999999999999
Q ss_pred HHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHH-HhccCCchhhhhhch
Q psy10046 275 VSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEY---GWRGTVLLLSGTFFNLCVCG-AIMRDPEWWTLEQNK 349 (805)
Q Consensus 275 ~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~---gWr~~f~i~~~~~~~~~i~~-~~~~~p~~~~~~~~~ 349 (805)
.++.|..| ++|++..++...+..+|..++..++..+.... +||+.+++.++..++.++.. ++.++|+|+..+++.
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~ 204 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRD 204 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccc
Confidence 99999987 77999999999999999988888776554433 49999998887765554444 345679999888888
Q ss_pred HHHHHhhhc
Q psy10046 350 EKDLKSIKG 358 (805)
Q Consensus 350 ~~~~~~l~~ 358 (805)
+++.+.+++
T Consensus 205 ~~A~~~l~~ 213 (451)
T PF00083_consen 205 EEAEKVLRK 213 (451)
T ss_pred ccccccccc
Confidence 877765543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-18 Score=182.38 Aligned_cols=166 Identities=17% Similarity=0.091 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhHHHH-HHHHHHHHHHHHHh-C-------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHH
Q psy10046 164 VVLAAFFINMAGDGIA-FSFGLLYIEFLNEF-G-------ASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVA 234 (805)
Q Consensus 164 ~~~~~~~~~~~~~~~~-~~~~~~~p~i~~~~-g-------~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~ 234 (805)
..+++.-+.++.+++. .+++.+.+-+...+ | ++....+.+..+..+|..+|++++|++.|++|||+++...
T Consensus 41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~ 120 (538)
T KOG0252|consen 41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKE 120 (538)
T ss_pred HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHH
Confidence 3333344445566655 55666655554443 2 4456778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHH
Q psy10046 235 GIISGVGFVLSCFSR------T-IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPI 306 (805)
Q Consensus 235 ~~l~~i~~i~~a~a~------~-~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i 306 (805)
+++..++++++++.. + .+++ .++|++.|+|.|+-+|...++.+|... ++||..+++..+..++|...|.++
T Consensus 121 liImIi~t~~~~~s~~~~~~~~~m~~L-~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 121 LIIMIICSALSGLSVGTTSPLGVMMTL-CFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred HHHHHHHHHHhccCCCCCCCcchhhHH-HHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHH
Confidence 999999999888752 2 3344 558999999999999999999999997 679999999888888887777666
Q ss_pred HHHHhh----c-----------cchHHHHHHHHHHHHHH
Q psy10046 307 TSYLIS----E-----------YGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 307 ~~~l~~----~-----------~gWr~~f~i~~~~~~~~ 330 (805)
+-.+.. . .=||..|.+-++..+++
T Consensus 200 t~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ 238 (538)
T KOG0252|consen 200 ALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV 238 (538)
T ss_pred HHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 654432 1 12887776554444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=186.64 Aligned_cols=155 Identities=13% Similarity=0.022 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----ChHHHHHHHHHHH-HHHHHHHhcCcHHHHH
Q psy10046 182 FGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFG-----CRSMTIVAGIISG-VGFVLSCFSRTIEHMY 255 (805)
Q Consensus 182 ~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~G-----rr~vlii~~~l~~-i~~i~~a~a~~~~~l~ 255 (805)
.....+.+.+++|++.++++...++..+.+.+-++ +|+++|+++ ||+.++++.++.+ +.....+..++...+.
T Consensus 45 ~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~ 123 (468)
T TIGR00788 45 RLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVA 123 (468)
T ss_pred hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 34455677778999999999999999999999666 999999997 7777777776663 4444444445655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchh---HHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFEKKRG---LACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCV 332 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg---~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i 332 (805)
+++.++.+++.+...++.-++..+..++++. ...++......+|.++|+.++|.+.+.+||+..|++.+++.++..+
T Consensus 124 ~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 124 AAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF 203 (468)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 5467899999999999999999988774332 2344555556689999999999999999999999998877776644
Q ss_pred HHHhc
Q psy10046 333 CGAIM 337 (805)
Q Consensus 333 ~~~~~ 337 (805)
..+++
T Consensus 204 ~~~~~ 208 (468)
T TIGR00788 204 VSNLS 208 (468)
T ss_pred HHHhc
Confidence 44444
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=181.28 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=109.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCCh-HHHHHHHHHHHHHHHHHHhcCc------HHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK----FGCR-SMTIVAGIISGVGFVLSCFSRT------IEH 253 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr----~Grr-~vlii~~~l~~i~~i~~a~a~~------~~~ 253 (805)
+..++.+.+|++...++++.++..+..++..|+.|.++|| +||| +.++++.+.++++.++....++ +.+
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3456778899999999999999999999999999999997 8874 5566777777777666555443 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHhhHHHhhHHHHHHHHhh-------ccchHHHHHHHH
Q psy10046 254 MYLTFGLLAGIGLALSYVTAVVSIAFWFE--KKRGLACSLGSTGTGFGTTVYAPITSYLIS-------EYGWRGTVLLLS 324 (805)
Q Consensus 254 l~i~~R~l~G~g~g~~~~~~~~~l~~~~p--~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-------~~gWr~~f~i~~ 324 (805)
+++ .-++.+++......+..++.+++.+ ++|.+..++...+..+|..+++.+...+.. ..||+..+.+.+
T Consensus 112 ~~~-~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ 190 (444)
T PRK09669 112 ACV-TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG 190 (444)
T ss_pred HHH-HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 434 3456666666666667777778774 779988888887777877777665544332 347888888777
Q ss_pred HHHHHHHHHHHh
Q psy10046 325 GTFFNLCVCGAI 336 (805)
Q Consensus 325 ~~~~~~~i~~~~ 336 (805)
++.+++.++.++
T Consensus 191 ii~~v~~~~~~~ 202 (444)
T PRK09669 191 LLGVVLFFCCFF 202 (444)
T ss_pred HHHHHHHHHHhC
Confidence 776665554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-15 Score=169.69 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=114.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhCChHHHHHH-HHHHHHHHHHHHhcCcHHH-------
Q psy10046 186 YIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE----KFGCRSMTIVA-GIISGVGFVLSCFSRTIEH------- 253 (805)
Q Consensus 186 ~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsD----r~Grr~vlii~-~~l~~i~~i~~a~a~~~~~------- 253 (805)
++.+.+++|++....+++..+..+...+.++++|.++| |+|||+.++++ .+...++.++.++++++..
T Consensus 27 l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~ 106 (477)
T TIGR01301 27 LTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD 106 (477)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence 44567889999999999999999999999999999999 59999988775 5566666677777665431
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cc--hhHHHHHHHHHhhHHHhhHHHHHHHH--hhcc-----
Q psy10046 254 ---------MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KK--RGLACSLGSTGTGFGTTVYAPITSYL--ISEY----- 314 (805)
Q Consensus 254 ---------l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~--rg~a~gi~~~~~~lG~~lgp~i~~~l--~~~~----- 314 (805)
+++..-.+..++.....++..+++++..| ++ ++.+.++...+.++|.++|+.++++. ...+
T Consensus 107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~ 186 (477)
T TIGR01301 107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT 186 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence 11111223445777778888899999987 43 36899999999999999999999875 2211
Q ss_pred --------chHHHHHHHHHHHHHHHHHHHhc
Q psy10046 315 --------GWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 315 --------gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+.|+.|++.+++.++..++.++.
T Consensus 187 ~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~ 217 (477)
T TIGR01301 187 EACGVSCANLKSCFLIDIILLAILTYIALSA 217 (477)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHeee
Confidence 56889998777666666655554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-18 Score=172.20 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTIVAGIIS 238 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vlii~~~l~ 238 (805)
.|...++..++..|..+..+...+.+..++..+.+++.++..++.++|.....+.+.++|++.|| +|-|..-++-+++.
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 44555555555555555555556777778888889999999999999999999999999999995 89888777777777
Q ss_pred HHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc
Q psy10046 239 GVGFVLSCF---SRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE 313 (805)
Q Consensus 239 ~i~~i~~a~---a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~ 313 (805)
.++.++.+. .+.+|++.. .||+.|+|+-...++...++..||. |+.+.++|+.....-+|..+--.+.+++.+.
T Consensus 121 ~~GqliFa~Ggi~~aFw~M~~-GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~ 198 (459)
T KOG4686|consen 121 FLGQLIFAAGGISHAFWTMLA-GRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT 198 (459)
T ss_pred HHHHHHHHhchHHHHHHHHHh-hheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence 777777654 567888755 6999999988888888888889997 9999999999999999987766666666654
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=168.41 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=123.9
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcC-CChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHH
Q psy10046 653 SMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQG-LSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAAC 731 (805)
Q Consensus 653 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G-~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~ 731 (805)
+++|+|.++.+.+..++........+.|.+.|+++.| ++....+.+.++..++.++.-...+++..| ++.++++.++
T Consensus 202 ~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r--~g~~~ll~~a 279 (400)
T PF03825_consen 202 KLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR--FGIKWLLLLA 279 (400)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence 6789999999989888888888888999999999988 777778887788888889999999999999 9999999999
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHH----HHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHH-HHhhhhccCCCC
Q psy10046 732 LIGCGVSTALMPLFATNYWALLFT----CLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLL-AQGIGNLVGPPL 804 (805)
Q Consensus 732 ~~~~~i~~l~~~~~~~~~~~~~~~----~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~-~~~ig~~igp~i 804 (805)
.+..++=..++....++.+...+. .++-|+.++..+.....++.+.+|++.++++.|++.+ ..++|+++|..+
T Consensus 280 ~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~i 357 (400)
T PF03825_consen 280 LVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLI 357 (400)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 988888777666432444433322 3458999999999999999999999999999999876 467888877654
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=164.26 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=120.5
Q ss_pred HHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhcC-cHHHHHH
Q psy10046 180 FSFGLLYI-EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF-GCRSMTIVAGIISGVGFVLSCFSR-TIEHMYL 256 (805)
Q Consensus 180 ~~~~~~~p-~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~-Grr~vlii~~~l~~i~~i~~a~a~-~~~~l~i 256 (805)
+.+..++| ++.+++|++..+++.+.+.+.+...++++++|+++||+ |||++++++.++.+++.++.++.. +...+++
T Consensus 26 Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l 105 (493)
T PRK15462 26 YGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYL 105 (493)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 33433444 44567899999999999999999999999999999999 999999999999999987776543 2222323
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc---chhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFEK---KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p~---~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
+ -.+.++|.|...+...+++++.+|+ +|..++++++.+..+|..++|++++++.+.+||++.|++.++..++.++.
T Consensus 106 ~-l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 106 S-LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred H-HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 2 2344566666667777888998873 59999999999999999999999999999999999999876544443333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-15 Score=169.97 Aligned_cols=149 Identities=14% Similarity=0.070 Sum_probs=107.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHH
Q psy10046 654 MFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLI 733 (805)
Q Consensus 654 ~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~ 733 (805)
+++|+.++.+++..++..........+.+.|++....+....+.+....+++.+++.++.+++.|| +|+|+.+.++.+
T Consensus 227 ~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r--~gkk~~~~~~~~ 304 (473)
T PRK10429 227 IYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKS--LSRRILWAGASI 304 (473)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHH
Confidence 457888888777777766666655555555555444455556666667778889999999999999 999999887776
Q ss_pred HHHHHHhhhhh----hhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccC-------ccchhhhhHHHHHHHhhhhccCC
Q psy10046 734 GCGVSTALMPL----FATNYWALLFTCLSFGIFFASNFSCTPIILVELVP-------LDRFATAYGLTLLAQGIGNLVGP 802 (805)
Q Consensus 734 ~~~i~~l~~~~----~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~~~a~gl~~~~~~ig~~igp 802 (805)
+..++.+.+.. ...+.+.+++..++.|++.+...+..+++++|..+ .+..|..+|+..++..+|..+|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~ 384 (473)
T PRK10429 305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA 384 (473)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence 65544433321 13345566667778888888888888999999854 45566688999999999888876
Q ss_pred CC
Q psy10046 803 PL 804 (805)
Q Consensus 803 ~i 804 (805)
.+
T Consensus 385 ~i 386 (473)
T PRK10429 385 FF 386 (473)
T ss_pred HH
Confidence 53
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-16 Score=175.78 Aligned_cols=322 Identities=16% Similarity=0.195 Sum_probs=238.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhCChH-HHHHHHHHHHHHHHHHHhc-C-------cH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE----KFGCRS-MTIVAGIISGVGFVLSCFS-R-------TI 251 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsD----r~Grr~-vlii~~~l~~i~~i~~a~a-~-------~~ 251 (805)
+.+++.+.+|+++..++++..+..+..++..|+.|.++| |+|||+ .++++.++.+++.+++... + ..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 345667778999999999999999999999999999999 899766 5667778888887777765 3 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc-------cchHHHHHH
Q psy10046 252 EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE--KKRGLACSLGSTGTGFGTTVYAPITSYLISE-------YGWRGTVLL 322 (805)
Q Consensus 252 ~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p--~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~-------~gWr~~f~i 322 (805)
.++++ .-++..++......+..++..+..+ ++|.+..++-..+..+|..+...+.+.+... .+|++..++
T Consensus 104 ~~~~~-~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 104 VWLFV-FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHH-HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 23334 3466678888888888888888875 6799999998888888887666666655532 169999888
Q ss_pred HHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhccccc
Q psy10046 323 LSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNA 402 (805)
Q Consensus 323 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (805)
.+++.++..++.++..+.+ .++. +
T Consensus 183 ~~iv~~v~~~i~~~~~ke~-------~~~~-~------------------------------------------------ 206 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKER-------SVEV-T------------------------------------------------ 206 (428)
T ss_pred HHHHHHHHhhhhhheeeec-------cccc-c------------------------------------------------
Confidence 8877776666555532110 0000 0
Q ss_pred cccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCccc
Q psy10046 403 ETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLV 482 (805)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (805)
+ .+
T Consensus 207 -------------------~--------------------------------~~-------------------------- 209 (428)
T PF13347_consen 207 -------------------E--------------------------------QE-------------------------- 209 (428)
T ss_pred -------------------c--------------------------------cc--------------------------
Confidence 0 00
Q ss_pred ccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCC
Q psy10046 483 KNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGH 562 (805)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (805)
.
T Consensus 210 --------------------------------------------------------~----------------------- 210 (428)
T PF13347_consen 210 --------------------------------------------------------K----------------------- 210 (428)
T ss_pred --------------------------------------------------------c-----------------------
Confidence 0
Q ss_pred ccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhH
Q psy10046 563 RFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDA 642 (805)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (805)
.....
T Consensus 211 ----------------------------~~~~~----------------------------------------------- 215 (428)
T PF13347_consen 211 ----------------------------KISLR----------------------------------------------- 215 (428)
T ss_pred ----------------------------ccccc-----------------------------------------------
Confidence 00000
Q ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCC
Q psy10046 643 RELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPW 721 (805)
Q Consensus 643 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~ 721 (805)
+.+ ..++++|.++.+++..++...+......+.+.|.+. .|.+ ...+.+.....++.+++.+++++++||
T Consensus 216 -~~~-----~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-- 286 (428)
T PF13347_consen 216 -DSL-----RSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-- 286 (428)
T ss_pred -cch-----hhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 000 245678888888888888888877777777777776 4555 456667778889999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhh-hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccC-------ccchhhhhHHHHHH
Q psy10046 722 LNVKKTYAACLIGCGVSTALMPLFA-TNYWALLFTCLSFGIFFASNFSCTPIILVELVP-------LDRFATAYGLTLLA 793 (805)
Q Consensus 722 ~gr~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~~~a~gl~~~~ 793 (805)
+|+++++.++.++.+++.+++.+.. ++.+.+++..++.|++.+..+.+.+++++|+.+ .+..|..+|+.+++
T Consensus 287 ~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~ 366 (428)
T PF13347_consen 287 FGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFF 366 (428)
T ss_pred ccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhh
Confidence 9999999999999988887776544 578888999999999999999999999999876 34568888999998
Q ss_pred HhhhhccCCC
Q psy10046 794 QGIGNLVGPP 803 (805)
Q Consensus 794 ~~ig~~igp~ 803 (805)
..+|..+++.
T Consensus 367 ~k~~~~la~~ 376 (428)
T PF13347_consen 367 IKIGQGLAGA 376 (428)
T ss_pred hHHHHHHHHH
Confidence 8888877654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-15 Score=160.51 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=113.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh---cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHH
Q psy10046 654 MFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN---QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAA 730 (805)
Q Consensus 654 ~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~---~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~ 730 (805)
+++++.+++..+..+++.........|++.|+.+ .|+++.++++.++.+.++.++|+++++++.|| +++++++.+
T Consensus 136 ~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r--~g~~~~l~~ 213 (310)
T TIGR01272 136 AFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM--ISQGRYLAF 213 (310)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHH
Confidence 4567788887777777777888888999999975 48999999999999999999999999999999 998888887
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 731 CLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 731 ~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.+++.++.+++.. .+... .....+++|++.+..+|.......+.+|.+ .+++.++. ....+|++++|++
T Consensus 214 ~~~l~~~~~~l~~~-~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l 283 (310)
T TIGR01272 214 NAFLAVLLSIGAAL-THGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLL 283 (310)
T ss_pred HHHHHHHHHHHHHH-cCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHH
Confidence 77777666655442 23332 234566789999999999988888887643 46667775 5667888888863
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=162.23 Aligned_cols=150 Identities=9% Similarity=-0.019 Sum_probs=114.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHH
Q psy10046 653 SMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAAC 731 (805)
Q Consensus 653 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~ 731 (805)
.++|++.++.+++..++...++.....+.|.|+++ .|.+....++......++.+++.++.+++.+| +++++++.++
T Consensus 223 ~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r--~g~~~~~~~g 300 (448)
T PRK09848 223 TLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR--IGKKNTFLIG 300 (448)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHH
Confidence 45788889888888777777777766677777765 67766655555555566778889999999999 9999999888
Q ss_pred HHHHHHHHhhhhhhh-hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCcc-------chhhhhHHHHHHHhhhhccCCC
Q psy10046 732 LIGCGVSTALMPLFA-TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD-------RFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 732 ~~~~~i~~l~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~-------~~~~a~gl~~~~~~ig~~igp~ 803 (805)
.++++++++++.+.. .+.+.+++..++.|+|.+...+...++.++..+.+ ..|..+|+.++.+.+|..+|+.
T Consensus 301 ~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~ 380 (448)
T PRK09848 301 ALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS 380 (448)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence 887777665554322 34555666677888998888888888888887643 4689999999999999988765
Q ss_pred C
Q psy10046 804 L 804 (805)
Q Consensus 804 i 804 (805)
+
T Consensus 381 i 381 (448)
T PRK09848 381 I 381 (448)
T ss_pred H
Confidence 3
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=157.78 Aligned_cols=149 Identities=12% Similarity=0.070 Sum_probs=108.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCChH-HHHHHHHHHHHHHHHHHhcCc------HHHH
Q psy10046 186 YIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK----FGCRS-MTIVAGIISGVGFVLSCFSRT------IEHM 254 (805)
Q Consensus 186 ~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr----~Grr~-vlii~~~l~~i~~i~~a~a~~------~~~l 254 (805)
..++.+.+|++...+|.+..+.-+--++.-|+.|.++|| +|||+ .++++.+.++++.+++-..++ +..+
T Consensus 33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 345567789999999999999999999999999999995 79765 566677777777766654442 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc-------cchHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE--KKRGLACSLGSTGTGFGTTVYAPITSYLISE-------YGWRGTVLLLSG 325 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p--~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~-------~gWr~~f~i~~~ 325 (805)
++ .-++..++......+..++..+..+ ++|.+..++...+..+|..+++.+...+... .||+....+.++
T Consensus 113 ~~-~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i 191 (460)
T PRK11462 113 AI-TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV 191 (460)
T ss_pred HH-HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 33 3356677777777777788887774 7899999999999998888887776555443 357777666666
Q ss_pred HHHHHHHHHH
Q psy10046 326 TFFNLCVCGA 335 (805)
Q Consensus 326 ~~~~~~i~~~ 335 (805)
+.+++.++.+
T Consensus 192 i~~i~~~i~~ 201 (460)
T PRK11462 192 VAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHH
Confidence 5555444433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-13 Score=151.88 Aligned_cols=150 Identities=18% Similarity=0.248 Sum_probs=125.4
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-hcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccch--hHHH
Q psy10046 653 SMFLELHFLLVSISTILLFTWFVIPYFYLTDFVT-NQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVK--KTYA 729 (805)
Q Consensus 653 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~-~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~--~~~~ 729 (805)
++-|.|....++++.++..-+...+......|.. ..|++..+...+.....+.+++|.+++|++.|| +|.| +++.
T Consensus 276 ~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r--~g~k~~~~l~ 353 (477)
T PF11700_consen 276 EIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR--FGPKTKRTLL 353 (477)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHH
Confidence 3446678888888888888888888888888888 489999999888889999999999999999999 7777 7766
Q ss_pred HHHHHHHHHHhhhhh-------hhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCC
Q psy10046 730 ACLIGCGVSTALMPL-------FATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGP 802 (805)
Q Consensus 730 ~~~~~~~i~~l~~~~-------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp 802 (805)
+++++..+..+.-.+ -.++.+.++++.+++|++.|...+..-.+.+++.|+++.+..+|++.+.....+++||
T Consensus 354 ~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGP 433 (477)
T PF11700_consen 354 ISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGP 433 (477)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 666555333322221 1457788899999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy10046 803 PL 804 (805)
Q Consensus 803 ~i 804 (805)
.+
T Consensus 434 ll 435 (477)
T PF11700_consen 434 LL 435 (477)
T ss_pred HH
Confidence 64
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-14 Score=151.32 Aligned_cols=156 Identities=21% Similarity=0.346 Sum_probs=119.4
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHH
Q psy10046 158 GGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGII 237 (805)
Q Consensus 158 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l 237 (805)
-++||.++++..+..+.....-..+++...++...|| +...+-|...+|++.+....+++-|+.|++|-|..++++.++
T Consensus 40 y~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~l 118 (480)
T KOG2563|consen 40 YPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVL 118 (480)
T ss_pred chhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHH
Confidence 3468999988888887655544667777777788888 777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-----cHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHH
Q psy10046 238 SGVGFVLSCFSR-----TIEH--MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSY 309 (805)
Q Consensus 238 ~~i~~i~~a~a~-----~~~~--l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~ 309 (805)
-++|..+-..+. +... +.+....+.+++.-..+....-+...||+ ++|..|..+-.++..+|.++|-++...
T Consensus 119 n~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 119 NGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred HHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccce
Confidence 999998866552 2222 22223555555544444444455558996 889999999988888888888888777
Q ss_pred Hhhcc
Q psy10046 310 LISEY 314 (805)
Q Consensus 310 l~~~~ 314 (805)
++.+-
T Consensus 199 lV~~~ 203 (480)
T KOG2563|consen 199 LVPSS 203 (480)
T ss_pred ecCCC
Confidence 77543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-13 Score=149.99 Aligned_cols=321 Identities=17% Similarity=0.152 Sum_probs=236.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhCC-hHHHHHHHHHHHHHHHHHHhcCc------HHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE----KFGC-RSMTIVAGIISGVGFVLSCFSRT------IEHMYL 256 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsD----r~Gr-r~vlii~~~l~~i~~i~~a~a~~------~~~l~i 256 (805)
++.+.+|++...+|.++.+.-+--++.-|+.|.++| |+|| |+.++++.+.+++.++++-.+++ ....++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 445668999999999999999999999999999999 4886 45677788899998888877663 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHhhHHHhhHHHHHHHHhh-------ccchHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWF--EKKRGLACSLGSTGTGFGTTVYAPITSYLIS-------EYGWRGTVLLLSGTF 327 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~--p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-------~~gWr~~f~i~~~~~ 327 (805)
. -++.+++......+..++..++. |++|.+..++...+..+|..+...+...++. ..||+...++.+++.
T Consensus 118 t-Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~ 196 (467)
T COG2211 118 T-YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIG 196 (467)
T ss_pred H-HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHH
Confidence 4 47888999988888888888776 4789999999999988887666655555443 347888877777776
Q ss_pred HHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccc
Q psy10046 328 FNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKF 407 (805)
Q Consensus 328 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (805)
++..+..++-...+ ..+
T Consensus 197 ~i~~l~~~~~v~ER-------~~~-------------------------------------------------------- 213 (467)
T COG2211 197 VILLLFCFFNVKER-------VVE-------------------------------------------------------- 213 (467)
T ss_pred HHHHHHHHHHhhcc-------cCc--------------------------------------------------------
Confidence 66665555421100 000
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCC
Q psy10046 408 SSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSV 487 (805)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (805)
.+ +. +.+
T Consensus 214 --------------~~-----------------~~----------~~~-------------------------------- 220 (467)
T COG2211 214 --------------TQ-----------------PT----------KTG-------------------------------- 220 (467)
T ss_pred --------------cc-----------------cC----------ccc--------------------------------
Confidence 00 00 000
Q ss_pred CCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccc
Q psy10046 488 ESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDF 567 (805)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (805)
.+.
T Consensus 221 ---------------------------------------------------~~~-------------------------- 223 (467)
T COG2211 221 ---------------------------------------------------VKL-------------------------- 223 (467)
T ss_pred ---------------------------------------------------ccc--------------------------
Confidence 000
Q ss_pred cccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHh
Q psy10046 568 LHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIV 647 (805)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (805)
+..+.+
T Consensus 224 -------------------------------------------------------------------------~~~~~~- 229 (467)
T COG2211 224 -------------------------------------------------------------------------KLKDSF- 229 (467)
T ss_pred -------------------------------------------------------------------------cHHHHH-
Confidence 000000
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchh
Q psy10046 648 GMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKK 726 (805)
Q Consensus 648 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~ 726 (805)
..+++|+.+..+++..++...+..........|.+. .|.++..+.+.......+.+++.++...+++| +|+|+
T Consensus 230 ----~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~--~gkk~ 303 (467)
T COG2211 230 ----LLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK--FGKKK 303 (467)
T ss_pred ----HHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH--hchHH
Confidence 135688888888888888888887777777777764 78888888888878888888889999999999 99999
Q ss_pred HHHHHHHHHHHHHhhhhhhh-hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccC-------ccchhhhhHHHHHHHhhhh
Q psy10046 727 TYAACLIGCGVSTALMPLFA-TNYWALLFTCLSFGIFFASNFSCTPIILVELVP-------LDRFATAYGLTLLAQGIGN 798 (805)
Q Consensus 727 ~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~~~a~gl~~~~~~ig~ 798 (805)
++.++.++..++.+++.+.. ++.+.++++.++.+++.+...++.+++++|.+. .+.-|..+|...+++-+|.
T Consensus 304 ~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ 383 (467)
T COG2211 304 LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGL 383 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 99999999888887776544 356666777788899999999999999998753 5666788899999888888
Q ss_pred ccCC
Q psy10046 799 LVGP 802 (805)
Q Consensus 799 ~igp 802 (805)
+++.
T Consensus 384 ala~ 387 (467)
T COG2211 384 ALAG 387 (467)
T ss_pred HHHH
Confidence 7764
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-13 Score=147.02 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=115.1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh----cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHH
Q psy10046 653 SMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN----QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTY 728 (805)
Q Consensus 653 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~----~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~ 728 (805)
+++|+|++|.+.+........+..+....+.|+.. .+.+....|++.+..-+..++...+..++.+| +|.|+.+
T Consensus 215 ~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r--ig~k~~L 292 (412)
T PF01306_consen 215 SLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR--IGAKNLL 292 (412)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh--cChHhHH
Confidence 67899999999887777666666665555666654 44555667788888888889999999999999 9999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHH-HHHHhhhhccCC
Q psy10046 729 AACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLT-LLAQGIGNLVGP 802 (805)
Q Consensus 729 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~-~~~~~ig~~igp 802 (805)
.++.+++.+=.+... ..++++.+.+.-.+-|+-.+.......-++++.++++..++.+.+. .+..++|.++.+
T Consensus 293 llag~i~~iRi~~~~-~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s 366 (412)
T PF01306_consen 293 LLAGVIMAIRIIGSG-FATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILS 366 (412)
T ss_dssp HHHHHHHHHHHHHHH-T--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888777776 5778888888889999988888888888999999999999999886 466677766544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.9e-12 Score=135.34 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-hcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHH
Q psy10046 656 LELHFLLVSISTILLFTWFVIPYFYLTDFVT-NQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIG 734 (805)
Q Consensus 656 ~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~-~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~ 734 (805)
+++.+..+.+..++..-+..........|.. ++|++..+..++.....+.+++|.++.|+|.+| ++.|.++.+++++
T Consensus 250 ~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r--fg~k~vl~~~lvi 327 (438)
T COG2270 250 GRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER--FGSKPVLMIGLVI 327 (438)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCceeehHHHHH
Confidence 3445556666666666666667777777877 589999999999999999999999999999999 9988888888877
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 735 CGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 735 ~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
..+.++... +......++++.+++|++.|...+..-.+..+.+|+++-+..+|++++....++++||.+
T Consensus 328 ~~~~~~~~~-~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~l 396 (438)
T COG2270 328 LSIAALYLI-FLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFL 396 (438)
T ss_pred HHHHHHHHH-HccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHH
Confidence 776666554 344456677788899999999999999999999999999999999999999999999853
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-14 Score=168.15 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC------------
Q psy10046 182 FGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR------------ 249 (805)
Q Consensus 182 ~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~------------ 249 (805)
....+..+.+.|+++..+.|++.+.|-++..+..++.+++..|.-|-+++-++.++.+++++++++-+
T Consensus 22 ~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~ 101 (539)
T PF03137_consen 22 VNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEAS 101 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccc
Confidence 34446789999999999999999999999999999999999998788899999999999988876520
Q ss_pred -------------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHH
Q psy10046 250 -------------------------------------TIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSL 291 (805)
Q Consensus 250 -------------------------------------~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi 291 (805)
.+..+++...++.|+|.+..++.+.+++-+..+ ++-+..+|+
T Consensus 102 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi 181 (539)
T PF03137_consen 102 NSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI 181 (539)
T ss_dssp --------------------------------------------------SSS---------------------------
T ss_pred ccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh
Confidence 011233445899999999999999999998876 778999999
Q ss_pred HHHHhhHHHhhHHHHHHHHhh
Q psy10046 292 GSTGTGFGTTVYAPITSYLIS 312 (805)
Q Consensus 292 ~~~~~~lG~~lgp~i~~~l~~ 312 (805)
+.+...+|+++|-++++.+..
T Consensus 182 ~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 182 LYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ---------------------
T ss_pred hhHHhhccHHHHHHHHHHHHh
Confidence 999999999999999987764
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.1e-11 Score=138.96 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=129.0
Q ss_pred HHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---HHhcCcHHHHH
Q psy10046 180 FSFGLLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVL---SCFSRTIEHMY 255 (805)
Q Consensus 180 ~~~~~~~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~---~a~a~~~~~l~ 255 (805)
+....++|.+. +.+|.+....++..+...++..++.+++|+++||+|||++++++.++..++.++ ...+.+...++
T Consensus 267 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (490)
T PRK10642 267 YMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIF 346 (490)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 34444556655 568998888888888899999999999999999999999988887654443322 22344566654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEY-GWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~-gWr~~f~i~~~~~~~~~i~ 333 (805)
+ .+++.|++.+........++.+++| +.|+.++++......+++.++|.+.+++.+.. +|+..+++..+..++.++.
T Consensus 347 ~-~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~ 425 (490)
T PRK10642 347 A-GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT 425 (490)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 4 5888888877766677777778888 66999999755545566778999999988765 4777777666555555554
Q ss_pred HHh-ccCCchhhhh-----hchHHHHHhhhccC
Q psy10046 334 GAI-MRDPEWWTLE-----QNKEKDLKSIKGAS 360 (805)
Q Consensus 334 ~~~-~~~p~~~~~~-----~~~~~~~~~l~~~~ 360 (805)
.++ .+.|+++..+ ++.+++.+.+.+.+
T Consensus 426 ~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 426 GVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 444 3455665543 77788888887654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=127.18 Aligned_cols=145 Identities=19% Similarity=0.139 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHH
Q psy10046 656 LELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIG 734 (805)
Q Consensus 656 ~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~ 734 (805)
.+|+...+++..++..++++.-...+-.|.-+ +|++..+++.+....+.+..+|.++.|++..|+ .+++++..+++++
T Consensus 206 ~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~-~~~~~~a~~G~~~ 284 (403)
T PF03209_consen 206 ASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRR-LGKKRTAALGCLL 284 (403)
T ss_pred hCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 34444444444455555555544555555544 799999999999999999999999999988853 6666776677766
Q ss_pred HHHHHhhhhh--hhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccC
Q psy10046 735 CGVSTALMPL--FATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVG 801 (805)
Q Consensus 735 ~~i~~l~~~~--~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~ig 801 (805)
+.+++.++.. ...+.+.+....+++|++.|.........+.+...+++.|+.+|+..+.+.++..+|
T Consensus 285 ~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg 353 (403)
T PF03209_consen 285 GALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLG 353 (403)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 6666555432 234678888899999999998888888888899999999999999998887766554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-11 Score=134.17 Aligned_cols=153 Identities=10% Similarity=0.087 Sum_probs=125.0
Q ss_pred HHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy10046 184 LLYI-EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLA 262 (805)
Q Consensus 184 ~~~p-~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~ 262 (805)
...| ++.+++|++..+++++.++..++..++.+++|+++||+|||+.+.++.+...+......+.++.+.+++ ++++.
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~l~ 315 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLG-LQLLN 315 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHH
Confidence 3344 445678999999999888888888889999999999999999888777666665555556677776645 58888
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 263 GIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+++.+...+....+..+.+|+++|++++++.....+|..++|.++|.+.++.||++.|++.+++.++.+++.++.
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 888777777777777888998899999999999999999999999999999999999998777777666665554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-11 Score=132.61 Aligned_cols=153 Identities=17% Similarity=0.235 Sum_probs=131.8
Q ss_pred HHHHHHHHHhC----CChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhcC--cHHHHHH
Q psy10046 184 LLYIEFLNEFG----ASKSKTAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTIVAGIISGVGFVLSCFSR--TIEHMYL 256 (805)
Q Consensus 184 ~~~p~i~~~~g----~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vlii~~~l~~i~~i~~a~a~--~~~~l~i 256 (805)
++.-++..+++ ++++++.-+.+.|..-..+.+.++|+++|| +|+|+.++++.++..+|.++.+.+. +...+++
T Consensus 43 iL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i 122 (498)
T COG3104 43 ILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYI 122 (498)
T ss_pred HHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 33445666666 999999999999998888999999999998 6999999999999999999999884 6778878
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc---chhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFEK---KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p~---~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
++ ++.++|.|..-+....++++.+|+ +|-..+++++++.++|+.++|++.+++.+.+||...|-+.++-....++.
T Consensus 123 ~L-~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 123 GL-ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred HH-HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 64 677899999999999999987752 37788999999999999999999999999999999999888777766666
Q ss_pred HHhc
Q psy10046 334 GAIM 337 (805)
Q Consensus 334 ~~~~ 337 (805)
.++.
T Consensus 202 f~~~ 205 (498)
T COG3104 202 FLLG 205 (498)
T ss_pred HHHc
Confidence 6655
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=118.51 Aligned_cols=133 Identities=23% Similarity=0.365 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Q psy10046 204 GSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE- 282 (805)
Q Consensus 204 ~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p- 282 (805)
.+.+.++..++.+++|++.||+|||+.++++.++..++.++..++++++.+++ .+++.|++.+...+....++.+.+|
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLII-ARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 45567888999999999999999999999999999999998888899888866 6899999999989999899999887
Q ss_pred cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 283 KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 283 ~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
++|++++++......+|..++|.+++.+.+..+|++.|++.+++.++..+..+++
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 6799999999999999999999999999999999999998887777666665554
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=142.06 Aligned_cols=155 Identities=18% Similarity=0.148 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc--------------
Q psy10046 183 GLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS-------------- 248 (805)
Q Consensus 183 ~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a-------------- 248 (805)
...+..+.+.|+++..+.|++.+.|-++..+...+..++.-|.-|-+++-+++++.+++++++++-
T Consensus 117 ~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~ 196 (735)
T KOG3626|consen 117 NSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI 196 (735)
T ss_pred hhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence 344578889999999999999999999999999999999999999999999999999999998763
Q ss_pred ------C-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHH
Q psy10046 249 ------R-------------------------------TIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACS 290 (805)
Q Consensus 249 ------~-------------------------------~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~g 290 (805)
+ .++.++++..++.|+|....++.+..++-+... ++-+..+|
T Consensus 197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG 276 (735)
T ss_pred hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence 0 034344556899999999999999999998886 77999999
Q ss_pred HHHHHhhHHHhhHHHHHHHHhhcc------------------c-hHHHHHHHHHHHHHHHHHHHhc
Q psy10046 291 LGSTGTGFGTTVYAPITSYLISEY------------------G-WRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 291 i~~~~~~lG~~lgp~i~~~l~~~~------------------g-Wr~~f~i~~~~~~~~~i~~~~~ 337 (805)
++.....+|+++|-++++++...+ | |+.-|++.+++.++..+.++++
T Consensus 277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f 342 (735)
T KOG3626|consen 277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF 342 (735)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999887521 2 6666777777777666666554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=128.09 Aligned_cols=149 Identities=11% Similarity=0.168 Sum_probs=124.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLA 267 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g 267 (805)
.+.+++|.+..+.+++.+...+...++.++.|++.||+|||+++.++.++..++.++..+.++.+.+++ .+++.|++.+
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g 303 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLM-LQLLNAIFIG 303 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445778999999999888887788888999999999999999988887776666666666677776645 5788899888
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 268 LSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 268 ~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
...+....++.+..|++++.+++++.....+|..++|.+++.+.+..||++.|++.+++.++..++..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 8888888888888898888999999999999999999999999999999999999887776666655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=132.16 Aligned_cols=155 Identities=17% Similarity=0.263 Sum_probs=124.8
Q ss_pred HHHHHHHHHhCCCh--------hHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC-c---H
Q psy10046 184 LLYIEFLNEFGASK--------SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR-T---I 251 (805)
Q Consensus 184 ~~~p~i~~~~g~s~--------~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~-~---~ 251 (805)
.+.+.+.+++|.+. ...+...++..++..++.++.|+++||+|+|++++++.++.+++.++..... + +
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 34455566666443 5678899999999999999999999999999999999999988877666642 2 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHH-HHhhHHHhhHHHHHHHHhhc------cchHHHHHHH
Q psy10046 252 EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGS-TGTGFGTTVYAPITSYLISE------YGWRGTVLLL 323 (805)
Q Consensus 252 ~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~-~~~~lG~~lgp~i~~~l~~~------~gWr~~f~i~ 323 (805)
+.+++ .+++.|++.+...+....++.+++| ++|++++|+.+ ....+|.++||+++|++.++ +||++.|++.
T Consensus 309 ~~l~l-~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~ 387 (418)
T TIGR00889 309 ALLFL-SMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF 387 (418)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence 34434 5789999998888888888899998 67999999997 67889999999999999987 4699999988
Q ss_pred HHHHHHHHHHHHhccC
Q psy10046 324 SGTFFNLCVCGAIMRD 339 (805)
Q Consensus 324 ~~~~~~~~i~~~~~~~ 339 (805)
+++.++++++.+++.+
T Consensus 388 ~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 388 AGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8877776666655543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.9e-11 Score=132.92 Aligned_cols=145 Identities=16% Similarity=0.251 Sum_probs=122.5
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q psy10046 192 EFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYV 271 (805)
Q Consensus 192 ~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~ 271 (805)
+.+.+..+++++.++..++..++.+++|+++||+|+|+.+.++.++.+++.++.+++++.+.+++ ++++.|++.+...+
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~l~g~~~~~~~~ 334 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSI-LKLLHAFEVPFLLV 334 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHHHH
Confidence 34667778899999999999999999999999999999999999999999888999999888755 68999998888777
Q ss_pred HHHHHHhhhcc-cchhHHHHH-HHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 272 TAVVSIAFWFE-KKRGLACSL-GSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 272 ~~~~~l~~~~p-~~rg~a~gi-~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
....++.+.+| +.++...++ ++.+..+|.+++|+++|++.+..||+..|++.+++.++..++.++.
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Confidence 77788887777 557766555 5677889999999999999999999999999888776665555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.8e-11 Score=130.71 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=122.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH-MYLTFGLLAG 263 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~-l~i~~R~l~G 263 (805)
..+.+.+++|.+..+.++..+++.++..++.+++|+++||+|||+.+.++.++.+++.++..+.++... +++...++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 345566789999989999999999999999999999999999999999999888888887777664322 2223457788
Q ss_pred HHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 264 IGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 264 ~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
++.+...+....++.+.+| ++|++++|++.....+|..++|++.+.+.++.||++.|++.+++.++.
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 8888777777778888887 779999999999999999999999999999999999999877665554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-10 Score=136.08 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10046 202 WIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF 281 (805)
Q Consensus 202 l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~ 281 (805)
+...+..++..++.++.|+++||+|||+++++++++.++++++.+++++...+++ ++++.|++.++.++...+++++++
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~-~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIA-LLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455667889999999999999999999999999999999999999888777755 578889888888888999999999
Q ss_pred c-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 282 E-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 282 p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
| +.|++++|+..++..+|.++||++++.+... +...+|++.+++.++.+++.+++
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC
Confidence 9 6799999999999999999999999988764 45667777777666655555544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=124.98 Aligned_cols=154 Identities=18% Similarity=0.281 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 182 FGLLYIEFLNEF-GASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRS-MTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 182 ~~~~~p~i~~~~-g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~-vlii~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
+....+.+.++. |.+..+.++..+...++..++.++++++.||+|||+ .+.++.++..++.++..+.++.+.+++ ..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 272 (352)
T cd06174 194 LLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV-AL 272 (352)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHH-HH
Confidence 344456666554 999999999999999999999999999999999999 999999999999999999888877766 57
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
++.|++.+...+....++.+..| ++|++.+++......+|..+++.+.+.+.+..||++.|++.+++.++..++.++
T Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 99999999999999999998888 789999999999999999999999999999999999999998888777666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-10 Score=129.89 Aligned_cols=156 Identities=15% Similarity=0.031 Sum_probs=114.8
Q ss_pred HHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH--HHHhcCcHHHHHHH
Q psy10046 181 SFGLLYIE-FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFV--LSCFSRTIEHMYLT 257 (805)
Q Consensus 181 ~~~~~~p~-i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i--~~a~a~~~~~l~i~ 257 (805)
......|. +.+++|++..+.++..+++.++..++.+++|+++||+|||+.+++...+..++.. +.....+...+++
T Consensus 276 ~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 354 (467)
T PRK09556 276 GIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA- 354 (467)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH-
Confidence 34444564 4567999999999999999999999999999999999999877665544443332 2233455555534
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhH-HHhhHHHHHHHHhh------------ccchHHHHHHH
Q psy10046 258 FGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGF-GTTVYAPITSYLIS------------EYGWRGTVLLL 323 (805)
Q Consensus 258 ~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~l-G~~lgp~i~~~l~~------------~~gWr~~f~i~ 323 (805)
++++.|++..+..........+++| +.||.+.|+......+ |.+++|.+.|++.+ ..||+..|++.
T Consensus 355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~ 434 (467)
T PRK09556 355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL 434 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence 4677776544433333455568888 5799999999888776 77999999999999 67899999988
Q ss_pred HHHHHHHHHHHHhc
Q psy10046 324 SGTFFNLCVCGAIM 337 (805)
Q Consensus 324 ~~~~~~~~i~~~~~ 337 (805)
++..++.+++.+++
T Consensus 435 ~~~~~~~~~~~~~~ 448 (467)
T PRK09556 435 DIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766665555543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-10 Score=124.53 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=125.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI 264 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~ 264 (805)
+++.+..+.|.+ ..++..+.+.++..++.+++|++.||+|+|+.+.++.++.+++.++.++.++.+.+++ ..++.|+
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~ 314 (399)
T PRK05122 238 FITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALI-GAALTGF 314 (399)
T ss_pred HHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHH
Confidence 344455566653 4567778889999999999999999999999999998888888888888888877755 5789999
Q ss_pred HHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcc
Q psy10046 265 GLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMR 338 (805)
Q Consensus 265 g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~~ 338 (805)
+.+..++.....+.+..| ++||++++++.....+|..+++++.|++.+..||++.|++.+++.++.+++.+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999888777777777776 77999999999999999999999999999999999999998877777666655543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-10 Score=124.64 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=125.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q psy10046 184 LLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAG 263 (805)
Q Consensus 184 ~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G 263 (805)
.+.+.+.++.+.+. .++..+.+.++..++.+++|++.||+|+|+.+.++.++.+++.++..+.++.+.+++ +.++.|
T Consensus 237 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 313 (392)
T PRK12382 237 TFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALA-GAALTG 313 (392)
T ss_pred HHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHH
Confidence 33445556667653 456677788888999999999999999999999999988888888888888877655 578999
Q ss_pred HHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 264 IGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 264 ~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
++.+...+...+.+.+.+| ++||++++++.....+|..++|++.+++.++.||++.|++.+++.++..++.++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 9988888877777777665 7899999999999999999999999999999999999999888777766666544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-10 Score=124.90 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHH-HHHHHHHHHHHHHHh-----cCcHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTI-VAGIISGVGFVLSCF-----SRTIEH 253 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vli-i~~~l~~i~~i~~a~-----a~~~~~ 253 (805)
+....+.|.+.+++|.+..+.+++.+++.++..++.+++|+++||+|||+.+. .+.+..+++.++..+ .++.+.
T Consensus 239 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 318 (402)
T TIGR00897 239 FGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAV 318 (402)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHH
Confidence 34445667788889999999999999999999999999999999999888764 333333333333221 245555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 254 MYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 254 l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
+++ +.++.|++.+...+ ....+.+..|++||+++|+.+....+|..++|++++.+.+..||+..|++.+++.++..++
T Consensus 319 ~~~-~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 319 ALI-IAIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHH-HHHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 544 46788888776544 3455667778899999999999999999999999999999999999999998887777766
Q ss_pred HHhc
Q psy10046 334 GAIM 337 (805)
Q Consensus 334 ~~~~ 337 (805)
.++.
T Consensus 397 ~~~~ 400 (402)
T TIGR00897 397 TAFI 400 (402)
T ss_pred HHHh
Confidence 6654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-09 Score=123.47 Aligned_cols=153 Identities=18% Similarity=0.094 Sum_probs=125.8
Q ss_pred HHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy10046 182 FGLLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGL 260 (805)
Q Consensus 182 ~~~~~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~ 260 (805)
+....|.+. +.+|++..+.+++.+++.++..++.+++|+++||+|+|++++...++.++..++..+.++...+.+ ..+
T Consensus 224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 302 (394)
T PRK03699 224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLY-AIL 302 (394)
T ss_pred HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHH-HHH
Confidence 334455555 678999999999999999999999999999999999999988888777777777767777766645 457
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
+.|++.+..++...++..+..|++++...++...+..+|..++|.+.|++.+..||+..+++.+++.+++.++..
T Consensus 303 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 303 GLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 888888877777777777777777788888888889999999999999999999999999988877666655433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-10 Score=124.14 Aligned_cols=151 Identities=12% Similarity=0.026 Sum_probs=120.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q psy10046 186 YIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIG 265 (805)
Q Consensus 186 ~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g 265 (805)
.+.+.+.+|.+...++++.+++.++..++.++.|+++||+|||.+++...++.....++..+.++.+.+++ +.++.|++
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~g~~ 307 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSV-LSIFWGIA 307 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHH-HHHHHHHH
Confidence 34556668999999999999999999999999999999999887544443333333333455667766645 56888888
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 266 LALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 266 ~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
.+...+.....+.+..|++|++++|++.....+|..+||+++|++.+++|++..|++.+++.++.++..++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 776666666777777888899999999999999999999999999999999999999988777766666554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=118.54 Aligned_cols=176 Identities=16% Similarity=0.239 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV 240 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i 240 (805)
||..+++..+++. ..|..+.++.+-|.+++.+|+++.+.+.+.+...+|..+| ++.|.+.|++|++.++++|.+...+
T Consensus 1 rW~~l~a~~~v~~-~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQL-CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHH-hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5787777777765 5578899999999999999999999999999999999874 8899999999999999999999999
Q ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhc
Q psy10046 241 GFVLSCFS-------RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISE 313 (805)
Q Consensus 241 ~~i~~a~a-------~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~ 313 (805)
|..+..++ .++|.+.+ +-++.|.+.+...........+.||++||.+.|+.-...+++..+...+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~-~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCL-FLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHH-HHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 88876553 35566644 45676666655555655666688899999999999999999999988888877765
Q ss_pred cchHHHHHHHHH-HHHHHHHHHHhccCC
Q psy10046 314 YGWRGTVLLLSG-TFFNLCVCGAIMRDP 340 (805)
Q Consensus 314 ~gWr~~f~i~~~-~~~~~~i~~~~~~~p 340 (805)
-.-.. +++.++ ..++.++..++.++.
T Consensus 158 ~~~~f-ll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 158 DPSSF-LLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred ChHHH-HHHHHHHHHHHHHHHhhheecc
Confidence 33333 334443 344445555565554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=122.81 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=128.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI 264 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~ 264 (805)
+.|.+.+++|.+..+++++.++..++..++.++++++.||+|.|+.+.++.++.++..++.+++++.+.+++ ..++.|+
T Consensus 227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~q~l~g~ 305 (382)
T TIGR00902 227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFL-LQILHCG 305 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH-HHHHHHH
Confidence 445566789999999999999999999999999999999999999999999999999999999999988866 5899999
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHH-HHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q psy10046 265 GLALSYVTAVVSIAFWFEKKRGLACSLGS-TGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCG 334 (805)
Q Consensus 265 g~g~~~~~~~~~l~~~~p~~rg~a~gi~~-~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~ 334 (805)
+.+...+....++.+..+++|+.+.+++. ...++|.++|+.++|++.+++|+ ..|++.+++.++.+++.
T Consensus 306 ~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 306 TFAVCHLAAMRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999773367899999986 57889999999999999999996 66777777666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-10 Score=131.35 Aligned_cols=148 Identities=11% Similarity=0.009 Sum_probs=113.0
Q ss_pred HHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHH
Q psy10046 182 FGLLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS--RTIEHMYLTF 258 (805)
Q Consensus 182 ~~~~~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a--~~~~~l~i~~ 258 (805)
...++|.+. +++|.+..+++++.+.+.++..++.+++|+++||+|||++++++.++..++.++.... .+.+.+.+ .
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 372 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL-L 372 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH-H
Confidence 344566666 5899999999999999999999999999999999999999888877766665544433 23333322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
.++.|+...+..+....++.+.+| ++||++++++.....+|..+||+++|.+.+..||++.+++.++...+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~ 445 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFV 445 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 344444433444556667778887 679999999999999999999999999999999999887666544333
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=128.09 Aligned_cols=174 Identities=15% Similarity=0.112 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHH
Q psy10046 161 GWMVVLAAFFINMAGDGIAFSFG-LLYIEFLN-EFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGC-RSMTIVAGII 237 (805)
Q Consensus 161 ~w~~~~~~~~~~~~~~~~~~~~~-~~~p~i~~-~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Gr-r~vlii~~~l 237 (805)
+|..+.++.+.+++.......+. ..-|++++ |.+.+.+..||+.++..++.+++.+++|..+.|.|. |+.++++.++
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 35555555555554332222222 22344444 477788889999999999999999999999999996 8889999999
Q ss_pred HHHHHHHH-Hh---cC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchhHHHHHHHHHhhHHHhhHHHHHHHHh
Q psy10046 238 SGVGFVLS-CF---SR-TIEHMYLTFGLLAGIGLALSYVTAVVSIAF-WFEKKRGLACSLGSTGTGFGTTVYAPITSYLI 311 (805)
Q Consensus 238 ~~i~~i~~-a~---a~-~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~-~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~ 311 (805)
..+++++. ++ .+ ..+.+ +..|++.|+|.|. ....-++++. ..+++|.++++....+..+|.++||.++.++.
T Consensus 112 ~~~g~llY~~l~~~~~~~~y~m-L~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNGVKYLM-LVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHHHHhcccchHHHH-HHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 99999887 33 23 34444 4479999999776 4555667774 45688999999998888888888888887665
Q ss_pred hc--cc-----------hHHHHHHHHHHHHHHHHHHHh
Q psy10046 312 SE--YG-----------WRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 312 ~~--~g-----------Wr~~f~i~~~~~~~~~i~~~~ 336 (805)
.- .| +..+-|+.+++.++.+++.++
T Consensus 190 ~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~ 227 (488)
T KOG2325|consen 190 PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF 227 (488)
T ss_pred hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence 31 12 224556666666665555544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=122.05 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy10046 182 FGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLL 261 (805)
Q Consensus 182 ~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l 261 (805)
.....|.+.++.|.+..+.+++.+++.++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.+.+++ ..++
T Consensus 239 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 317 (406)
T PRK11551 239 LLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLL-AGFA 317 (406)
T ss_pred HHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH-HHHH
Confidence 334467788889999999999999999999999999999999999999988877777777777777777776655 4578
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHh
Q psy10046 262 AGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEY-GWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 262 ~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~-gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
.|++.++..+...+++.+.+| ++|++++|+......+|.++||+++|++.++. +|...+++.+...++.+++.++
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 888887778888888888887 77999999999999999999999999999875 4556666555555544444443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.4e-10 Score=124.26 Aligned_cols=136 Identities=17% Similarity=0.182 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10046 200 TAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAF 279 (805)
Q Consensus 200 ~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~ 279 (805)
.+.+.+++.++..++.+++|+++||+|||+.+.++.++.+++.++.++.++.+.+++ .+++.|++.+...+.....+.+
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI-LRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHhhhHhhHHHHHHHHHH
Confidence 456667777888899999999999999999999998888888887777788777755 5789999999888888888776
Q ss_pred hcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 280 WFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 280 ~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
..+ +++|+.+++......+|..+||+++|++.+..||++.|++.+++.++..++.++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 666 679999999999999999999999999999999999999998877776666554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=126.00 Aligned_cols=148 Identities=9% Similarity=0.136 Sum_probs=119.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHH--HHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 184 LLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF--GCRSMTIV--AGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 184 ~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~--Grr~vlii--~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
.+++.+.+++|.+..+++++.+++.++..++.++.|+++||. ++|+..++ ++++.+++.+++.+.++++.+++ ++
T Consensus 262 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i-~~ 340 (455)
T TIGR00892 262 IFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI-YC 340 (455)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH-HH
Confidence 344666678999999999999999999999999999999973 34433333 33444555566677888887755 58
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc-chHHHHHHHHHHHHHHHH
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEY-GWRGTVLLLSGTFFNLCV 332 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~-gWr~~f~i~~~~~~~~~i 332 (805)
++.|++.+...+...+++.+.+| ++++++++++..+..+|.++||+++|++.+.. +|++.|++.+++.++.++
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999888888888888776 67999999999999999999999999999877 599999998876665544
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=122.87 Aligned_cols=155 Identities=11% Similarity=-0.052 Sum_probs=129.3
Q ss_pred HHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy10046 182 FGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGL 260 (805)
Q Consensus 182 ~~~~~p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~ 260 (805)
+....|.+.++ +|.+....+++.+.+.++..++.++.+++.||.++++.+.++.++.+++.++.++.++.+.+++ +.+
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 320 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVL-CLA 320 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHH-HHH
Confidence 33445666666 8999999999999999999999999999999988888888888888888888888888776645 468
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+.|++.+...+...+++.+..| +.||+++|++.....+|..+||.+.|++.+.+|++..+++.+++.+++.++.++.
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 8888888777777788888887 5699999999999999999999999999999999999988887666655555444
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=121.91 Aligned_cols=127 Identities=14% Similarity=0.177 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhcc-cc
Q psy10046 208 MAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIG--LALSYVTAVVSIAFWFE-KK 284 (805)
Q Consensus 208 ~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g--~g~~~~~~~~~l~~~~p-~~ 284 (805)
.+...+..++.|.++|++|||..+.+.++...+..++..+.. +++++ +.|+. .+.......+++++... ++
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence 577788899999999999999999999988888877766655 33312 33332 33456777788887765 77
Q ss_pred hhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccCC
Q psy10046 285 RGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMRDP 340 (805)
Q Consensus 285 rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~~~p 340 (805)
|...+|+.......+.+++|.+++.+....|.-.+|++..+..++..+..+++.+.
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999888887777777666443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=125.40 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-----cC------c
Q psy10046 182 FGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF-----SR------T 250 (805)
Q Consensus 182 ~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~-----a~------~ 250 (805)
...+.|.+.+++|.+....++...++.++..++.+++|+++||+|||+.+.+++++.+++.++.++ .. +
T Consensus 303 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 303 IMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 444567888899999988899999999999999999999999999999999988887777666652 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHH
Q psy10046 251 IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFN 329 (805)
Q Consensus 251 ~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~ 329 (805)
...+.+ +.++.++...+..+....++.+.+| ++|+.++++......+|.+++|.+.+++.++.||++.|++.++++++
T Consensus 383 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 461 (481)
T TIGR00879 383 NVAIVF-ILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVL 461 (481)
T ss_pred HHHHHH-HHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHH
Confidence 222222 2222222222233555566678887 67999999999999999999999999999999999999998888777
Q ss_pred HHHHHHhccC
Q psy10046 330 LCVCGAIMRD 339 (805)
Q Consensus 330 ~~i~~~~~~~ 339 (805)
.+++.+++.+
T Consensus 462 ~~i~~~~~~~ 471 (481)
T TIGR00879 462 GLIFVYFFLP 471 (481)
T ss_pred HHHHHheecc
Confidence 7777665543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-08 Score=105.79 Aligned_cols=153 Identities=11% Similarity=0.045 Sum_probs=111.0
Q ss_pred HHHHHHHHH-hCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy10046 184 LLYIEFLNE-FGASKSKTA-WIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLL 261 (805)
Q Consensus 184 ~~~p~i~~~-~g~s~~~~~-l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l 261 (805)
.+.|++.+. .|++..++. -+.-+..-.+.+..++...+.|.+|.|++++++.+...+..++.-+.++...+-+ .-++
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~-~q~~ 103 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQL-MQFF 103 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHH-HHHH
Confidence 345666664 788887765 4555555667778888999999999999999999999999999999999998866 5788
Q ss_pred HHHHHHHHHHHHHHHHhhhc-ccchhHHHHHHHHHhhHHHhhHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHhcc
Q psy10046 262 AGIGLALSYVTAVVSIAFWF-EKKRGLACSLGSTGTGFGTTVYAPITSYLISE--YGWRGTVLLLSGTFFNLCVCGAIMR 338 (805)
Q Consensus 262 ~G~g~g~~~~~~~~~l~~~~-p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~--~gWr~~f~i~~~~~~~~~i~~~~~~ 338 (805)
.|++.+. ..+..+++-... +++-.++.+...++..+|-.++.++|..++.. ...+...++......+.+++.+++.
T Consensus 104 yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 104 YGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8887765 444445554333 46667778888888888888888888877763 3455565655554445555544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-09 Score=116.92 Aligned_cols=148 Identities=14% Similarity=0.066 Sum_probs=119.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGI 264 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~ 264 (805)
++|.+.++.|.+...+++..+++.++..++.++.|+++||+|+|+++.++.++.+++.+... .. ..++. ..++.|+
T Consensus 222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~-~~~l~g~ 297 (381)
T PRK03633 222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-AAMAP-ALFILGA 297 (381)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-HHHHH-HHHHHHH
Confidence 35777778899999999999999999999999999999999999999888887777665443 22 22223 3577788
Q ss_pred HHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 265 GLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 265 g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
+.+...+...+.+.+..| ++++.+.+.+..+..+|.++||.++|++.+++||++.|++.+++.++..++.+.
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 777778888888887776 567778888888899999999999999999999999999988777666555444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-09 Score=116.68 Aligned_cols=157 Identities=13% Similarity=0.054 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Q psy10046 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR-TIEHMYLTFG 259 (805)
Q Consensus 181 ~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~-~~~~l~i~~R 259 (805)
......|.+.+++|.+..++++..+++.++..++.+++|++.||+|||+.++++.++..++.++....+ +...+ + -
T Consensus 223 ~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--~ 299 (393)
T PRK09705 223 SLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-W--A 299 (393)
T ss_pred HHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-H--H
Confidence 333445666677999999999999999999999999999999999999999888887777766554333 32222 2 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-c-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHh
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWF-E-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~-p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~~~~i~~~~ 336 (805)
++.|++.+...+.......+.. | +++++++++......++..++|++.|++.+..| |...|++.++..++..++.++
T Consensus 300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 4567887777776665555554 4 569999999999999999999999999999876 777777776666665555555
Q ss_pred ccCC
Q psy10046 337 MRDP 340 (805)
Q Consensus 337 ~~~p 340 (805)
+.++
T Consensus 380 ~~~~ 383 (393)
T PRK09705 380 FAPA 383 (393)
T ss_pred hccc
Confidence 5443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-08 Score=107.20 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=107.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLA 267 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g 267 (805)
.+.+++|++..+++.+....++..++..++.|.++||+|||+.-++.++++++.++ +-..+++..+++ .|++.|++.+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~-GRvlgGiaTS 136 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLL-GRVLGGIATS 136 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHH-HHHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999986 455688999877 5999999999
Q ss_pred HHHHHHHHHHh-hhcccc-----hhHHHHHHH-HHhhHHHhhHHHHHHHHhhccch--HHHHHHHHHHHHHHHHHHH
Q psy10046 268 LSYVTAVVSIA-FWFEKK-----RGLACSLGS-TGTGFGTTVYAPITSYLISEYGW--RGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 268 ~~~~~~~~~l~-~~~p~~-----rg~a~gi~~-~~~~lG~~lgp~i~~~l~~~~gW--r~~f~i~~~~~~~~~i~~~ 335 (805)
..+.+--+++. |+..+. .+.-++... ...++-.+++.+++.++++..|. .++|.....+.++..+++.
T Consensus 137 LLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 137 LLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence 99988888876 664321 222222222 22333345555666666665554 7778776666555555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-09 Score=116.42 Aligned_cols=152 Identities=13% Similarity=0.089 Sum_probs=108.5
Q ss_pred HHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChH--HHH------HHHHHHHHHHHHHHhcCcHHH
Q psy10046 183 GLLYIE-FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRS--MTI------VAGIISGVGFVLSCFSRTIEH 253 (805)
Q Consensus 183 ~~~~p~-i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~--vli------i~~~l~~i~~i~~a~a~~~~~ 253 (805)
....|. +.+.+|.+..+.+++.+++.++..++.+++|+++||+|||+ ... ++.++.++..+.....++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (399)
T TIGR00893 235 LTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYA 314 (399)
T ss_pred HHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 333444 45668999999999999999999999999999999999985 111 111111111122222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHHHHHHHHHHH
Q psy10046 254 MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLLLSGTFFNLC 331 (805)
Q Consensus 254 l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~~~~ 331 (805)
. +..-++ +++..+..+...+++.+.+| ++|++++++......+|..++|.+.+++.+..| |++.|++.+++.++..
T Consensus 315 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 392 (399)
T TIGR00893 315 A-LALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392 (399)
T ss_pred H-HHHHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence 3 322233 33333367888888888887 679999999999999999999999999999988 9999998887776665
Q ss_pred HHHHh
Q psy10046 332 VCGAI 336 (805)
Q Consensus 332 i~~~~ 336 (805)
+..++
T Consensus 393 ~~~~~ 397 (399)
T TIGR00893 393 LSYLL 397 (399)
T ss_pred HHHHH
Confidence 55443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=120.22 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=112.3
Q ss_pred HHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHH--HHHHh--cCcHHHH
Q psy10046 180 FSFGLLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGF--VLSCF--SRTIEHM 254 (805)
Q Consensus 180 ~~~~~~~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~--i~~a~--a~~~~~l 254 (805)
.....+.|.+. +++|.+..+.++..+++.++..++.+++|+++||+|||+.++++.++..+.. ++..+ ..+.+.+
T Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
T TIGR00883 236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF 315 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 33444455555 6789999999999999999999999999999999999998775554443332 22222 2455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHH-HHHhhHHHhhHHHHHHHHhhccc-hHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLG-STGTGFGTTVYAPITSYLISEYG-WRGTVLLLSGTFF 328 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~-~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~ 328 (805)
++ ..++.|++.+...+...+++.+.+| ++|++++++. ..+..+|..++|+++|++.++.| |++.+++.++..+
T Consensus 316 ~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 316 FF-LVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HH-HHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 44 4678888888888888899999988 5699999884 56667899999999999999988 8888776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=121.94 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh---C--ChHHHHHHHHHHHHHHHHHHhcC----cHHH
Q psy10046 183 GLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF---G--CRSMTIVAGIISGVGFVLSCFSR----TIEH 253 (805)
Q Consensus 183 ~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~---G--rr~vlii~~~l~~i~~i~~a~a~----~~~~ 253 (805)
....+.+.+++|+++.+.....++..+.+.+ -+++|.++|-+ | ||+.++++.++.+++.+..++.+ +...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 3456788999999999999999999988887 67799999964 4 44556667666656555555433 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 254 MYLTFGLLAGIGLALSYVTAVVSIAFWF---EKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 254 l~i~~R~l~G~g~g~~~~~~~~~l~~~~---p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
..+ +-++..+|.+.....+-+.+.|.. |+.+|...+.......+|.+++..++|.+.+..++++.|++.+++.++.
T Consensus 89 ~~~-~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 89 AVV-LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM 167 (433)
T ss_pred HHH-HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence 433 457788888888998888888776 3448888999999999999999999999999999999999888777766
Q ss_pred HHHHHhc
Q psy10046 331 CVCGAIM 337 (805)
Q Consensus 331 ~i~~~~~ 337 (805)
++..+++
T Consensus 168 ~~~~~~~ 174 (433)
T PF03092_consen 168 LIVALFL 174 (433)
T ss_pred HHHHHHh
Confidence 6555554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=111.59 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=118.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH
Q psy10046 170 FINMAGDGIAFSFGLLYIEFLNE---FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSC 246 (805)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~i~~~---~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a 246 (805)
+..++..+...+.....+.+..+ +|++..+.++..+.+.+++.+|.++.+++.||+|+|+.+.++.++.+++.++..
T Consensus 147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~ 226 (310)
T TIGR01272 147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAA 226 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455543 699999999999999999999999999999999999998888888888777666
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHH
Q psy10046 247 FSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLS 324 (805)
Q Consensus 247 ~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~ 324 (805)
..++...+ ++ -++.|++.+..+|...+...+.+|++.+.+.++. ....+|.+++|++.|.+.+..|.++.|++..
T Consensus 227 ~~~~~~~~-~~-~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 227 LTHGYVAM-WF-VLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HcCCHHHH-HH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 66655444 32 3578999999999999888888887767777775 4566899999999999999999998887543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.2e-09 Score=115.70 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=119.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q psy10046 186 YIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIG 265 (805)
Q Consensus 186 ~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g 265 (805)
.|.+.++.|.+...++++.++..++..++.++.|++.||+|+|+.+.++.++.+++.++.+++++.+.+++ ..++.|++
T Consensus 228 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~ 306 (382)
T PRK11128 228 SAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIV-IQILHCGT 306 (382)
T ss_pred HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHH
Confidence 34555779999999999999999999999999999999999999999999999988888888899888756 57999999
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHH-HHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 266 LALSYVTAVVSIAFWFEKKRGLACSLGS-TGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 266 ~g~~~~~~~~~l~~~~p~~rg~a~gi~~-~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
.+...+....++.+..+.+++++.+++. ....+|..+||.++|.+.+.+|+ ..|++.+++.++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 307 FTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 9988888888887766677788888886 55678889999999999999997 4666666555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=112.85 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q psy10046 176 DGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMY 255 (805)
Q Consensus 176 ~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~ 255 (805)
.+....+..+-|.+.+..|++...++++..+|.++..+|.++.|+++|| +.|+.+.....+.++..+...+..+...+.
T Consensus 225 ~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~ 303 (394)
T COG2814 225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALA 303 (394)
T ss_pred cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3444556667788889999999999999999999999999999999999 988888888777777766665554443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
++.-++.|++.+.........+++..|+.++.+.++....+++|..+|..++|.+.+++|+....|+.+++.++.+++.+
T Consensus 304 ~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 304 LALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 43456778877777777777777766899999999999999999999999999999999999999999888877777665
Q ss_pred hc
Q psy10046 336 IM 337 (805)
Q Consensus 336 ~~ 337 (805)
+.
T Consensus 384 ~~ 385 (394)
T COG2814 384 LS 385 (394)
T ss_pred HH
Confidence 53
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=115.59 Aligned_cols=144 Identities=13% Similarity=-0.007 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy10046 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGL 260 (805)
Q Consensus 181 ~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~ 260 (805)
.....+|.+.++.|.+....+...+++.++..++.+++|+++||+|||+.+.++.++.+++.++....++.....++ -+
T Consensus 249 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 327 (426)
T PRK12307 249 PIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLG-AC 327 (426)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHH-HH
Confidence 34445677777889999999999999999999999999999999999999988887776665554433221111121 13
Q ss_pred HHHHH--HHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHH
Q psy10046 261 LAGIG--LALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSG 325 (805)
Q Consensus 261 l~G~g--~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~ 325 (805)
+.|++ ..+..+....++.+.+| +.||+++|+......+|..++|++.+++.+..|+.+..++..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~ 395 (426)
T PRK12307 328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA 395 (426)
T ss_pred HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33332 22233445566778888 6799999999999999999999999999999887765444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-08 Score=114.02 Aligned_cols=150 Identities=16% Similarity=0.194 Sum_probs=108.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF---SRTIEHMYLTFGLLAGI 264 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~---a~~~~~l~i~~R~l~G~ 264 (805)
++.+.+|.+......+..+..+...++.+++|+++||+|||++++++.++..++.++..+ ..+...+++...++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 445678988876666666677777888999999999999999988887665554433322 22323332333466678
Q ss_pred HHHHHHHHHHHHHhhhcc-cchhHHHHHHH-HHhhHHHhhHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHhc
Q psy10046 265 GLALSYVTAVVSIAFWFE-KKRGLACSLGS-TGTGFGTTVYAPITSYLISEY--GWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 265 g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~-~~~~lG~~lgp~i~~~l~~~~--gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+.+...+...+++.+.+| +.|+.+.++.. .+..+|+.++|.+.+++.+.. +|+..+.+.++..++.++..++.
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 888777888888899998 66888888854 445689999999999998744 48888887777766666665544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-08 Score=115.52 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=106.3
Q ss_pred HHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHH-HHHHHHHHHHHHHHHh--cCcHHHH
Q psy10046 181 SFGLLYIEFLN-EFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF--GCRSMT-IVAGIISGVGFVLSCF--SRTIEHM 254 (805)
Q Consensus 181 ~~~~~~p~i~~-~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~--Grr~vl-ii~~~l~~i~~i~~a~--a~~~~~l 254 (805)
....++|.+.+ ++|.+..+.++..+++.++..++.+++|+++||+ |||... ++.+.+..++.++..+ ..+.+.+
T Consensus 271 ~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 350 (452)
T PRK11273 271 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVD 350 (452)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence 34445566555 4799989999999999999999999999999999 555432 2223333333332222 3344443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHh-hHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTT-VYAPITSYLISEYGWRGTVLLLSGTFFNLCV 332 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~-lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i 332 (805)
++ ..++.|++..........+..+.+| +.||+++|+......+|.. ++|.+.|++.++.||++.|++.++++++.++
T Consensus 351 ~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~ 429 (452)
T PRK11273 351 MA-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 429 (452)
T ss_pred HH-HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 23 2344454433323333344557787 6799999999888888765 4799999999999999999988887777666
Q ss_pred HHHhc
Q psy10046 333 CGAIM 337 (805)
Q Consensus 333 ~~~~~ 337 (805)
+...+
T Consensus 430 ~~~~~ 434 (452)
T PRK11273 430 LLIVV 434 (452)
T ss_pred HHHHH
Confidence 66554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-09 Score=115.52 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=109.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHHH
Q psy10046 187 IEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFV-LSCFSRTIEHMYLTFGLLAGIG 265 (805)
Q Consensus 187 p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i-~~a~a~~~~~l~i~~R~l~G~g 265 (805)
+++.+++|.+..+++++.+++.++..++.++.|+++||+|||+.+.++.++.++..+ +.....+.+.+.+ ..++.|++
T Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 341 (405)
T TIGR00891 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGL-GLFFQQML 341 (405)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHH-HHHHHHHH
Confidence 345567899999999999999999999999999999999999998888776544333 3344455555544 34677777
Q ss_pred HHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHH
Q psy10046 266 LALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLL 322 (805)
Q Consensus 266 ~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i 322 (805)
.+...+....++.+.+| ++|++++|+......+|..++|+++|++.++.| |+..++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 77667777788888887 679999999999999999999999999999988 8776654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=116.60 Aligned_cols=156 Identities=14% Similarity=0.059 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc--Cc-HHHHHHHHH
Q psy10046 183 GLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS--RT-IEHMYLTFG 259 (805)
Q Consensus 183 ~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a--~~-~~~l~i~~R 259 (805)
..+.|.+.+++|.+.....+......++..++.+++++++||+|||++++++.++.+++.++.+.. .+ .....+.+-
T Consensus 291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 345688888899987777787788888999999999999999999999999999888887776543 12 111111122
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHH------HhhccchHHHHHHHHHHHHHHH
Q psy10046 260 LLAGIGLALS-YVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSY------LISEYGWRGTVLLLSGTFFNLC 331 (805)
Q Consensus 260 ~l~G~g~g~~-~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~------l~~~~gWr~~f~i~~~~~~~~~ 331 (805)
++.+++.+.. .+....++.+.+| ++|+.++|+......+|.++++.+.+. +.+.++|++.|++.++++++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 3344444332 2556778888888 679999999998888888887655544 3457899999999887777666
Q ss_pred HHHHhcc
Q psy10046 332 VCGAIMR 338 (805)
Q Consensus 332 i~~~~~~ 338 (805)
++.+++.
T Consensus 451 ~~~~~~~ 457 (479)
T PRK10077 451 LFMWKFV 457 (479)
T ss_pred HHHHhcc
Confidence 6655543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-08 Score=112.95 Aligned_cols=142 Identities=13% Similarity=0.219 Sum_probs=115.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 194 GASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTA 273 (805)
Q Consensus 194 g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~ 273 (805)
+.+....+++.++..+...++.++.|++.||+|+|+.++++.++.++..++.+++++.+.+++ .+++.|++........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~ 328 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVI-LKMLHAFEVPFLLVGC 328 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHHHHHH
Confidence 455667888899999999999999999999999999999999999998888788888888756 5789998876665555
Q ss_pred HHHHhhhcc-cchhHHHHH-HHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 274 VVSIAFWFE-KKRGLACSL-GSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 274 ~~~l~~~~p-~~rg~a~gi-~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
..++.+..+ +.++...+. ++....+|.+++++++|++.+..||+..|++.+++.++..++..+
T Consensus 329 ~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 329 FKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 555555555 446665555 567889999999999999999999999999998887776666544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-08 Score=113.84 Aligned_cols=156 Identities=10% Similarity=-0.045 Sum_probs=105.9
Q ss_pred HHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--C-ChHHHHHHHHHHHHHHH--HHHhcCcHHHH
Q psy10046 181 SFGLLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF--G-CRSMTIVAGIISGVGFV--LSCFSRTIEHM 254 (805)
Q Consensus 181 ~~~~~~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~--G-rr~vlii~~~l~~i~~i--~~a~a~~~~~l 254 (805)
.....+|.+. +++|++..+.++..+++.++..++.+++|+++||+ + |+....+..+...+..+ +.....+...+
T Consensus 261 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
T PRK11663 261 AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQ 340 (434)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence 3344455555 67899999999999999999999999999999998 3 33332222211111111 11112233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
.+ +.++.|++...........+.+.+| ++|+.++|+.+....+|.+++|++.+++.++.||+..|++.+++.++..+.
T Consensus 341 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~ 419 (434)
T PRK11663 341 AA-CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALL 419 (434)
T ss_pred HH-HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 2344444333223333445567776 689999999999999999999999999999999999999988887776665
Q ss_pred HHhc
Q psy10046 334 GAIM 337 (805)
Q Consensus 334 ~~~~ 337 (805)
.++.
T Consensus 420 ~~~~ 423 (434)
T PRK11663 420 LLPF 423 (434)
T ss_pred HHHH
Confidence 5543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-08 Score=114.37 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=132.4
Q ss_pred HHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy10046 184 LLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLA 262 (805)
Q Consensus 184 ~~~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~ 262 (805)
.++|.+. +.+|.+...+|++.+++.+|..+|.++.+++.+++++++.+.++.++++++.+..+++++.+..+++ -++.
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~-l~l~ 317 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA-LFLA 317 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH-HHHH
Confidence 3456665 5689999999999999999999999999999999999999999999999999999999999888664 5888
Q ss_pred HHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 263 GIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
|++.........+.+....| +.||++++++.+....+..+|.++.|++.+.+|.+..+.+.++..+++.++.+..
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888888888888888888 5699999999999999999999999999999999999888776655555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-08 Score=111.48 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH-H---HhcCcHHHHH
Q psy10046 181 SFGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVL-S---CFSRTIEHMY 255 (805)
Q Consensus 181 ~~~~~~p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~-~---a~a~~~~~l~ 255 (805)
....+.|.+.++ +|++..+.++...++.++..++.+++|+++||+|||++++++.++..+..++ . ...+++..+.
T Consensus 256 ~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (434)
T PRK15075 256 LITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML 335 (434)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 344445666554 8999999999999999999999999999999999999887765544332211 1 1223443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHH-HhhHHHhhHHHHHHHHhhccchHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGST-GTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~-~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
+ ..++.|++.+...+....++.+.+| +.|+.++++... +..++..++|.+.+++.++.|+++
T Consensus 336 ~-~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~ 399 (434)
T PRK15075 336 A-VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA 399 (434)
T ss_pred H-HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence 3 2355666766666666677788887 679999998644 445567789999999999888643
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=110.54 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHH-HHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF--GCRSMT-IVAGI 236 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~--Grr~vl-ii~~~ 236 (805)
+-|.+.++.+++++.=++.. .+++ -++.+..|.+...+++..++|-++...|.+++|+++||+ |||... ++.++
T Consensus 253 ~iW~la~a~vfvYivR~gi~-dW~p--~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~ 329 (448)
T COG2271 253 LIWLLALANVFVYVVRYGIN-DWGP--LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML 329 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhHH--HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34555555554444333322 2333 256778899999999999999999999999999999984 777654 44444
Q ss_pred HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-hhHHHHHHHHHhhH-HHhhHHHHHHHHhh
Q psy10046 237 ISGVGFVLSCFSRT--IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKK-RGLACSLGSTGTGF-GTTVYAPITSYLIS 312 (805)
Q Consensus 237 l~~i~~i~~a~a~~--~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~-rg~a~gi~~~~~~l-G~~lgp~i~~~l~~ 312 (805)
+..++.+..-++++ +....+ +-++.|+..-+..-.......+..||+ -|.+.|+...+..+ |.+++....+++.+
T Consensus 330 ~i~~~~~~~w~~~~~~~~l~~~-~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d 408 (448)
T COG2271 330 LITASLVLYWLAPNGSYLLDAI-LLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD 408 (448)
T ss_pred HHHHHHHHHHcCCCccHHHHHH-HHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence 44455555555553 355544 567888887776655555555888955 89999999998888 88888888899999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 313 EYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 313 ~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
.+||.+.|.+..+.++++.++.+.
T Consensus 409 ~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 409 TWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999887766665555444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.4e-08 Score=112.30 Aligned_cols=151 Identities=10% Similarity=0.123 Sum_probs=113.1
Q ss_pred HHHHHHHhCCChhHHHHHHH-HHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---HHhc-CcHHHHHHHHHH
Q psy10046 186 YIEFLNEFGASKSKTAWIGS-LFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVL---SCFS-RTIEHMYLTFGL 260 (805)
Q Consensus 186 ~p~i~~~~g~s~~~~~l~~s-~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~---~a~a-~~~~~l~i~~R~ 260 (805)
.|++.+++|.+..+++++.. ...++..++.+++|+++||+|+|+.++++.++.+++.++ .++. ++.+.+.+ .-+
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~-~~~ 324 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA-AVF 324 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHH
Confidence 35566789999999999874 666899999999999999999988877666554544332 2333 34444433 235
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+..++.|...+...++..+..+ +.+++..++.+....+|.+++++++|++.+..||+..|++.++++++.+++.++.
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666667776 5588999999999999999999999999999999999998888877776666554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=116.79 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=108.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh-------HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCR-------SMTIVAGIISGVGFVLSCFSRTIEHMYLTFGL 260 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr-------~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~ 260 (805)
++.+++|++...++++.+++.++..++.+++|+++||+||| ..+.+..++.++..++.++..+.+..++ +-+
T Consensus 278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~ 356 (476)
T PLN00028 278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIV-VMI 356 (476)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHH-HHH
Confidence 44567899999999999999999999999999999999865 2333333334444444555566555433 345
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccCC
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMRDP 340 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~~~p 340 (805)
+.|++.+.......+++.+..|+++|.+.|+...+..+|+.++|.+.+ .....+|++.|++.+++.++..++.++.+.|
T Consensus 357 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~ 435 (476)
T PLN00028 357 LFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIHFP 435 (476)
T ss_pred HHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHheecc
Confidence 666666655555556666777888999999987777777777766543 2223569999999988888887777777655
Q ss_pred ch
Q psy10046 341 EW 342 (805)
Q Consensus 341 ~~ 342 (805)
.+
T Consensus 436 ~~ 437 (476)
T PLN00028 436 QW 437 (476)
T ss_pred ch
Confidence 43
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-09 Score=119.94 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHH
Q psy10046 658 LHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCG 736 (805)
Q Consensus 658 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~ 736 (805)
+.++.+.++.++...+......++|.|+++ .|++..+++++.+...++.+++.++.|+++|| ++||+++.++.++.+
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr--~g~k~~~~~~~~~~~ 84 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK--FDKKRYMLLAITAFA 84 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCcchhHHHHHHHHH
Confidence 446777778888888888888889988865 79999999999999999999999999999999 999999988888887
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 737 VSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 737 i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
++++++. ..++++.++++.++.|.+.+...++...+..+.+|+++|++++|+.+....+|.++||++
T Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l 151 (395)
T PRK10054 85 SGFIAIP-LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPL 151 (395)
T ss_pred HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666 455666666555666777677777888899999999999999999999999999999875
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-08 Score=109.74 Aligned_cols=162 Identities=12% Similarity=0.079 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCh--HHHHHHHHHHHHHHHHHHh-----
Q psy10046 175 GDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCR--SMTIVAGIISGVGFVLSCF----- 247 (805)
Q Consensus 175 ~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr--~vlii~~~l~~i~~i~~a~----- 247 (805)
.++..........+..+++|++..+...+..+..+..++|++++|++.||+|.| ++++++++++.+..+...+
T Consensus 294 ~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~ 373 (477)
T PF11700_consen 294 SDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS 373 (477)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455555555555667779999999999999999999999999999999999999 8888888888666655555
Q ss_pred ---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHH
Q psy10046 248 ---SRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLL 322 (805)
Q Consensus 248 ---a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i 322 (805)
.++.+.+++ +.++.|++.|+.++..-+++++..| .+.+..+|++....-....+||++.+.+.+..| -|+.++.
T Consensus 374 ~~g~~~~~~f~~-~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 374 FFGLKSPWEFWV-LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred ccCcccHHHHHH-HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 567777766 5799999999999999999999888 668999999999999999999999999999876 8888888
Q ss_pred HHHHHHHHHHHHHhc
Q psy10046 323 LSGTFFNLCVCGAIM 337 (805)
Q Consensus 323 ~~~~~~~~~i~~~~~ 337 (805)
+.++.++.+++.+++
T Consensus 453 l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 453 LLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHhhc
Confidence 877777777666555
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=106.70 Aligned_cols=145 Identities=13% Similarity=0.071 Sum_probs=113.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q psy10046 186 YIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIG 265 (805)
Q Consensus 186 ~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g 265 (805)
.|.+.+++|.+....+++...+.++..++.++.+++.||.+++..+....+...+..++..+..+.+.+.+ ..++.|++
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~G~~ 318 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATG-VAIIWGLT 318 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHH
Confidence 46777889999999999999999999999999999999965444444333334444444455566666655 46888999
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q psy10046 266 LALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLC 331 (805)
Q Consensus 266 ~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~ 331 (805)
.+...+...+++.+..|++++++.++......+|..+|+.++|++.+..|++..++..+++.++..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 319 FALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 988888888888877787778888888888899999999999999999999998888776554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-08 Score=106.97 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=113.5
Q ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Q psy10046 184 LLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT-IEHMYLTFGLL 261 (805)
Q Consensus 184 ~~~p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~-~~~l~i~~R~l 261 (805)
...|.+.++ +|.+..+.+++.+++.++..++.++.+++.||+|||+.+.++.++.+++.++..+.++ .+.+++ ..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 310 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLV-LWFA 310 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHH-HHHH
Confidence 445666665 8999999999999999999999999999999999999999888888888877777764 666655 5789
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc
Q psy10046 262 AGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG 315 (805)
Q Consensus 262 ~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g 315 (805)
.|++.+...+...+++.+..| ++|++++++......+|..++|.++|++.+..|
T Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999888888888888887 679999999999999999999999999988654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-08 Score=107.52 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=106.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHH
Q psy10046 186 YIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF-SRTIEHMYLTFGLLAGI 264 (805)
Q Consensus 186 ~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~-a~~~~~l~i~~R~l~G~ 264 (805)
.|.+.+.+|.+....++..+++.++..++.++.|++.||+|+|+.+.++.++.+++.++... .++.+..++ +.++.++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 301 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLI-FAFICCA 301 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHH
Confidence 45666678999999999999999999999999999999999999999888887777655543 445444433 3456666
Q ss_pred HHHHHHHHHHHHHh-hhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHh
Q psy10046 265 GLALSYVTAVVSIA-FWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE-YGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 265 g~g~~~~~~~~~l~-~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~-~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
+.....+....... ...+ +.++.+ .......+|.++||.++|++.+. .+|++.+++.+++.++......+
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 302 GLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 65544443333333 3333 334443 34667789999999999999985 68999999887665554444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-08 Score=108.06 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy10046 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGL 260 (805)
Q Consensus 181 ~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~ 260 (805)
....+.|.+.+++|.+..+.++..+++.++..++.+++|+++||+|||+.++...++..+..++.....+.+.+++ +.+
T Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 346 (398)
T TIGR00895 268 FLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLL-LGA 346 (398)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHH-HHH
Confidence 3444567888899999999999999999999999999999999999995544444333333333333556666645 468
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHH
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYL 310 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l 310 (805)
+.|++.+...+...+++.+.+| ++|++++|+......+|.++||+++|++
T Consensus 347 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 347 IAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 8999999989999999998887 6799999999999999999999999876
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-09 Score=120.36 Aligned_cols=146 Identities=17% Similarity=0.261 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHH
Q psy10046 657 ELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCG 736 (805)
Q Consensus 657 ~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~ 736 (805)
.+.+|.++++.++..........++|.+.++.|.+..+.+++.+.+.++.+++.+++|+++|| ++||+++..+.++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR--VGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHHHHH
Confidence 345677777777777777778889999999999999999999999899999999999999999 999999888887777
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCCC
Q psy10046 737 VSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805 (805)
Q Consensus 737 i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ia 805 (805)
++.+... ..++.+.+++..++.|++.+...+....++.+.+|++++++++|+.+....+|.++||+++
T Consensus 87 ~~~~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 87 LGSLFCA-LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 7766655 4567777888889999999999999999999999999999999999999999999998763
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=106.57 Aligned_cols=149 Identities=9% Similarity=-0.082 Sum_probs=114.2
Q ss_pred HHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHH
Q psy10046 186 YIEF-LNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS-----RTIEHMYLTFG 259 (805)
Q Consensus 186 ~p~i-~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a-----~~~~~l~i~~R 259 (805)
.|.+ .+++|.+..+.++......++..++.+++|+++||+|+|+.+.++.++.+++.++.++. .+.+++++ .-
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~ 316 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTA-GL 316 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHH-HH
Confidence 3444 56789999999988888888999999999999999999999988888777776665543 34555544 35
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~ 335 (805)
++.|+|.+...+..........++++|++.+++.....+|..+|+.+++.+.+..+|....+..++..++.+++..
T Consensus 317 ~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK15402 317 SLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVR 392 (406)
T ss_pred HHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHH
Confidence 7888888877666555544445678999999999999999999999999999888877766665544444444333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=104.94 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=108.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh------cCcHHHHHHHHH
Q psy10046 187 IEFLNEFGASKSKTAWIGSLFM-AVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF------SRTIEHMYLTFG 259 (805)
Q Consensus 187 p~i~~~~g~s~~~~~l~~s~~~-lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~------a~~~~~l~i~~R 259 (805)
+.+.+|.|++..+++++..++. ++..++.+++|++.||+|+|+.+.++.++.++..+.... ..+...++. +-
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 310 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS-CS 310 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH-HH
Confidence 4555678999999999988876 466778899999999999999988877665333222211 223333323 33
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-c-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWF-E-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCV 332 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~-p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i 332 (805)
++.+++.+...+...+.+.+.. + +.+++.+++.+....+|..+||.++|++.+..||+..|++.+++.++..+
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 5556667777777777766554 4 57899999999999999999999999999999999999887766655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=107.21 Aligned_cols=120 Identities=16% Similarity=0.263 Sum_probs=98.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 196 SKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR-TIEHMYLTFGLLAGIGLALSYVTAV 274 (805)
Q Consensus 196 s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~-~~~~l~i~~R~l~G~g~g~~~~~~~ 274 (805)
+....+++.+++.++..++.+++++++||+|+|+++.++.++.+++.++..+.+ +.+.+++ +.++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 333 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILV-LIILAGFGQNFVTGLVW 333 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456677888888999999999999999999999999999988888877776653 4455444 46788898888888888
Q ss_pred HHHhhhcc--------cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccch
Q psy10046 275 VSIAFWFE--------KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGW 316 (805)
Q Consensus 275 ~~l~~~~p--------~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gW 316 (805)
+++++..+ +.+|.++|+++.+..+|..+++.+.+++.+..||
T Consensus 334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88776542 3479999999999999999999999999887665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-07 Score=106.30 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=113.7
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q psy10046 190 LNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALS 269 (805)
Q Consensus 190 ~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~ 269 (805)
.+.+|.+..++++..+.+.+++.++.++.|++.||+|+|+++.++.++.+++.++..+.++...+ +. -++.|++.+..
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~glg~~~i 364 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGL-IA-LTLCSAFMSIQ 364 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHH-HH-HHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999888877777766666664333 32 36789999999
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHHHHHHHHHHHH
Q psy10046 270 YVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLLLSGTFFNLCV 332 (805)
Q Consensus 270 ~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~~~~i 332 (805)
+|...+...+.++++.+.+.++..+ ..+|..++|++.|.+.+..| -+..|++..+..+.+++
T Consensus 365 ~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 365 YPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999888888877777887764 44688899999999999887 78888765544444333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.1e-07 Score=103.01 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=97.4
Q ss_pred HHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH--h--cCcHHHHHH
Q psy10046 182 FGLLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSC--F--SRTIEHMYL 256 (805)
Q Consensus 182 ~~~~~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a--~--a~~~~~l~i 256 (805)
+...+|.+. +.+|.+..+.++..++..++..++.++.|+++||+|||++++++.++.++..+... . ..+....+.
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG 341 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 334455544 56899988999988888888899999999999999999988776655443332211 1 223332212
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhh-HHHhhHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTG-FGTTVYAPITSYLISEYG-WRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~-lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~~~~i~ 333 (805)
+-++.+++.+...+....++.+++| +.|+.++|+.+.... ++....|.+.+.+ +..| |...+++.++..++.++.
T Consensus 342 -~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 342 -LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHH
Confidence 1122333334444455667789998 669999999876544 3344577777755 4445 555555555555555555
Q ss_pred HHhc
Q psy10046 334 GAIM 337 (805)
Q Consensus 334 ~~~~ 337 (805)
.+++
T Consensus 420 ~~~l 423 (432)
T PRK10406 420 SLML 423 (432)
T ss_pred HHHh
Confidence 5544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-08 Score=111.95 Aligned_cols=154 Identities=14% Similarity=0.039 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHhCCChhHHH-----------H-HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTA-----------W-IGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF 247 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~-----------l-~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~ 247 (805)
+......|.+.++.|.+....+ . ...+..++..++.+++++++||+|||++++++.++.+++.++.++
T Consensus 305 y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~ 384 (502)
T TIGR00887 305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF 384 (502)
T ss_pred HccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 3444456788888887643211 1 233444566678889999999999999998888777766655554
Q ss_pred cC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc---------
Q psy10046 248 SR----TIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE--------- 313 (805)
Q Consensus 248 a~----~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~--------- 313 (805)
.. +...+ +.+-++..++..+..+....+.+|.+| +.|++++|+......+|.+++|.+.+++.+.
T Consensus 385 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (502)
T TIGR00887 385 AYNHLSTHGFL-AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPT 463 (502)
T ss_pred HHHhcchhHHH-HHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccc
Confidence 21 11111 111111122222234455566779998 6699999999999999999999999998873
Q ss_pred -cchHHHHHHHHHHHHHHHHHH
Q psy10046 314 -YGWRGTVLLLSGTFFNLCVCG 334 (805)
Q Consensus 314 -~gWr~~f~i~~~~~~~~~i~~ 334 (805)
.++...|++.+++.++..+..
T Consensus 464 ~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 464 GIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred cccchHHHHHHHHHHHHHHHHh
Confidence 345667777777666655544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=116.48 Aligned_cols=143 Identities=13% Similarity=0.181 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHH
Q psy10046 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVST 739 (805)
Q Consensus 660 ~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~ 739 (805)
+..++++.++...........+|.+.++.|.+..+.+++.+.+.++.+++.++.|+++|| +|||+++.++.++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR--FGTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH--hCcHHHHHHHHHHHHHHH
Confidence 344555566666666777788999999999999999999999999999999999999999 999999999998888888
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCCC
Q psy10046 740 ALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805 (805)
Q Consensus 740 l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ia 805 (805)
++.. ..++++.+++..++.|++.+...+....++.+.+|+++|+.++|+..+...+|.++||.++
T Consensus 82 ~~~~-~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 146 (485)
T TIGR00711 82 LLCG-VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLG 146 (485)
T ss_pred HHHh-CcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccH
Confidence 7776 4677888888889999999999999999999999999999999999999999999998763
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-07 Score=101.74 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy10046 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF-GCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFG 259 (805)
Q Consensus 181 ~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~-Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R 259 (805)
....++|.+.+++|.+..+.+++.+++.++..++.+++|+++||+ +||+.+.++.++.+++.++..+..+...+ + +-
T Consensus 215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 292 (355)
T TIGR00896 215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-A-WA 292 (355)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-H-HH
Confidence 344456777788999999999999999999999999999999999 56777778888888877777766554333 2 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc
Q psy10046 260 LLAGIGLALSYVTAVVSIAFW-FE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG 315 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~-~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g 315 (805)
++.|++.+..++...+.+... .+ ++++...++......+|..++|.+.|++.++.|
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999988888777766643 33 557888999888888999999999999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=103.49 Aligned_cols=165 Identities=18% Similarity=0.223 Sum_probs=128.9
Q ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh
Q psy10046 169 FFINMAGDGIAFSFGLLYIE-FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF 247 (805)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~-i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~ 247 (805)
++.++.++|....++..+|. +..+|+++...++.....+.+...+..+++|+|+||+|.++++.+..++.+++.++..+
T Consensus 224 sllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 224 SLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSL 303 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHc
Confidence 33444455655566655554 45679999999999999999999999999999999999999999988888888777766
Q ss_pred cC-------cHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-h
Q psy10046 248 SR-------TIEHMYL---TFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-W 316 (805)
Q Consensus 248 a~-------~~~~l~i---~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-W 316 (805)
.. +....+. ++.++.|+|.| ....++..++|++-|.+.|+.....++|+.+-|...+...+..| +
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG----svfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~ 379 (417)
T COG2223 304 FLTGFGHGGSFVVFVAVFLALFVFAGLGNG----SVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY 379 (417)
T ss_pred cccccccCcchHHHHHHHHHHHHHhccCcc----hheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccH
Confidence 53 3333322 23444455544 45577788899999999999999999999999999999998887 8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy10046 317 RGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 317 r~~f~i~~~~~~~~~i~~~~~ 337 (805)
...|++...+.+++.+..+..
T Consensus 380 ~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 380 TGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887777766554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-07 Score=101.05 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=98.9
Q ss_pred HHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHH
Q psy10046 186 YIE-FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS-----RTIEHMYLTFG 259 (805)
Q Consensus 186 ~p~-i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a-----~~~~~l~i~~R 259 (805)
.|. +.+++|.+..+.+++.+.+.++..++.++.|++.||+|+|+.+.++.++..++.++..+. .....+ +...
T Consensus 229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 307 (385)
T TIGR00710 229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI-IGPM 307 (385)
T ss_pred ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH-HHHH
Confidence 344 445789999999999999999999999999999999999999888887777776665543 223333 3345
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhH-HHhhHHHHHHHHhhccchHHHHHH
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGF-GTTVYAPITSYLISEYGWRGTVLL 322 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~l-G~~lgp~i~~~l~~~~gWr~~f~i 322 (805)
++.|++.+...+.......+..|++++++.++....... |.+.+++ .+.+.+..+|...++.
T Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 308 MFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHHHH
Confidence 678888888888887777777788899999998876655 4555554 4454444445444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.6e-07 Score=101.59 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=103.7
Q ss_pred HHHHHHhCCChhHHHHHHHHH-HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHH---Hhc-CcHHHHHHHH---
Q psy10046 187 IEFLNEFGASKSKTAWIGSLF-MAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLS---CFS-RTIEHMYLTF--- 258 (805)
Q Consensus 187 p~i~~~~g~s~~~~~l~~s~~-~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~---a~a-~~~~~l~i~~--- 258 (805)
+.+.+++|++..+++++.+.. .++..++.+++|++.||+|+|+.+.++.++.++..+.. ++. ++.+.+++..
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 456777999999999988665 45689999999999999999998877776665554332 343 4555443321
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
.++.|++.+...+....++.+.+|. ...++......+|..++++++|.+.+..||++.|++.++++++.+++.+.
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSA---TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 1344555555566666666666662 23455555567787777789999999999999999988777766555443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.7e-09 Score=119.33 Aligned_cols=157 Identities=12% Similarity=0.104 Sum_probs=124.1
Q ss_pred HhhhccccchhhHH-HHHHHHHHHHHHHhhhhhhhhHHHHHH-hcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCc-
Q psy10046 646 IVGMFDFSMFLELH-FLLVSISTILLFTWFVIPYFYLTDFVT-NQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWL- 722 (805)
Q Consensus 646 ~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~lp~~~~-~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~- 722 (805)
..+.++.+.+++|+ ++..++..++...+++.+..+++.|++ +.|++..+++.+...+.+......+++|+++|| +
T Consensus 8 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr--~~ 85 (500)
T PRK09584 8 PTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDK--VL 85 (500)
T ss_pred CCCCCChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cc
Confidence 45677788888875 777777778888888888889999986 489999998887777665555556789999999 7
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCcc--chhhhhHHHHHHHhhhhcc
Q psy10046 723 NVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD--RFATAYGLTLLAQGIGNLV 800 (805)
Q Consensus 723 gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~~~~a~gl~~~~~~ig~~i 800 (805)
|||+++.++.++.+++.+++.+..+..+.+++..++.|++.|...+....++.+.+|++ ++..++++.++..++|+++
T Consensus 86 G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~ 165 (500)
T PRK09584 86 GTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF 165 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence 99999999988888887776633334455556667788888888888888999999754 3556889999999999999
Q ss_pred CCCC
Q psy10046 801 GPPL 804 (805)
Q Consensus 801 gp~i 804 (805)
||.+
T Consensus 166 gp~i 169 (500)
T PRK09584 166 SMLA 169 (500)
T ss_pred HHHH
Confidence 8865
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=107.31 Aligned_cols=156 Identities=10% Similarity=0.064 Sum_probs=102.7
Q ss_pred HHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH---HHHHHHHh--cCcHHHHH
Q psy10046 182 FGLLYIEFLN-EFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG---VGFVLSCF--SRTIEHMY 255 (805)
Q Consensus 182 ~~~~~p~i~~-~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~---i~~i~~a~--a~~~~~l~ 255 (805)
...+.|.+.+ .+|.+..+.++..+++.++..++.+++|+++||+|+++....+.++.. ++.++..+ ..+.+..+
T Consensus 270 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T TIGR00712 270 VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDM 349 (438)
T ss_pred HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 3344555555 479999999999999999999999999999999975432222322221 12222222 22333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHH-HhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFG-TTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG-~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
+ .-++.|++..+..........+.+| ++||.++|+.+....+| .+++|.+.|.+.++.||.+.|++.+++.++.++.
T Consensus 350 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 428 (438)
T TIGR00712 350 I-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 428 (438)
T ss_pred H-HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3 2344454432222222334557777 67999999998877776 5789999999999999999999888776666666
Q ss_pred HHhcc
Q psy10046 334 GAIMR 338 (805)
Q Consensus 334 ~~~~~ 338 (805)
.+++.
T Consensus 429 ~~~~~ 433 (438)
T TIGR00712 429 LIVVM 433 (438)
T ss_pred HHHHH
Confidence 55543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=113.99 Aligned_cols=141 Identities=14% Similarity=0.184 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHH-hcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHH
Q psy10046 661 LLVSISTILLFTWFVIPYFYLTDFVT-NQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVST 739 (805)
Q Consensus 661 ~~~~i~~~~~~~~~~~~~~~lp~~~~-~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~ 739 (805)
+++.+..++...+++....+++.|++ +.|.+....+++.+...+...+.++++|+++|| ++||+.+.++.++.++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr--~g~k~~l~~~~~~~~~~~ 90 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR--FGAKPMIVTGMLMRAAGF 90 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH--hCchHHHHHHHHHHHHHH
Confidence 44556677777777777888888875 589999999999999999999999999999999 999999999999998888
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 740 ALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 740 l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.+. ..++++.+++..++.|++.+...+...+++.+.+|+++++.++|+......+|..+||++
T Consensus 91 ~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l 154 (400)
T PRK11646 91 ATMA-IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALL 154 (400)
T ss_pred HHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776 456777778888888988887788888899999999999999999999999999999875
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=119.77 Aligned_cols=143 Identities=10% Similarity=0.048 Sum_probs=117.4
Q ss_pred HHHHHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q psy10046 187 IEFLNEFGASKS-KTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIG 265 (805)
Q Consensus 187 p~i~~~~g~s~~-~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g 265 (805)
.++.+.+|++.. ..+++.+++.++.+++.+++|+++||+++++++.++.++.+++.++.++..+.+.+++ +.++.|++
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~ 335 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLV-LFFLFGFS 335 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHH
Confidence 455677899988 9999999999999999999999999999999998888888888888888888877756 46888999
Q ss_pred HHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh-ccchHHHHHHHHHHHHHH
Q psy10046 266 LALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS-EYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 266 ~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-~~gWr~~f~i~~~~~~~~ 330 (805)
.+...+...+++.+..| +.||+++|+..+...+|.++++.+++.+.. .+++.+.|++.+++.++.
T Consensus 336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 99888888888888777 679999999999999999888888776654 245666666655544433
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-07 Score=101.00 Aligned_cols=106 Identities=11% Similarity=-0.071 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy10046 203 IGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE 282 (805)
Q Consensus 203 ~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p 282 (805)
..++-...+.+++++.+.+.++.|.|+.++++..++.+..+..-+.+.+... + ...+.|+|.+..+.....++++...
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~y-f-ssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLY-F-SSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHH-H-HHHHhhhhHHheecccceehhhcCC
Confidence 3778888899999999999999999999999999999988877776655444 5 4789999999999999999998886
Q ss_pred -cchhHHHHHHHHHhhHHHhhHHHHHHHH
Q psy10046 283 -KKRGLACSLGSTGTGFGTTVYAPITSYL 310 (805)
Q Consensus 283 -~~rg~a~gi~~~~~~lG~~lgp~i~~~l 310 (805)
+.+.+..++.+.....+.++|..+...+
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 6688888888888888887776665444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=114.46 Aligned_cols=141 Identities=17% Similarity=0.079 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHh
Q psy10046 661 LLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTA 740 (805)
Q Consensus 661 ~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l 740 (805)
+++++..++.+.......+..|.+.++.|.+..+.+++.+.+.++..++.+..|++.|| +|||+++..+.++.+++.+
T Consensus 11 ~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr--~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 11 IFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI--IGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH--hChHHHHHHHHHHHHHHHH
Confidence 33444444445545555566676667799999999999999999999999999999999 9999999999999888888
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 741 LMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 741 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.. ..++++.+++.-++.|++.++..+....++.+.+|+++|+.++|++++...+|.+++|++
T Consensus 89 ~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 89 ATM-FATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHH-HhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877 467788888888899999999888888899999999999999999999999998887754
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.7e-07 Score=101.58 Aligned_cols=143 Identities=18% Similarity=0.322 Sum_probs=122.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 196 SKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVV 275 (805)
Q Consensus 196 s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~ 275 (805)
+...+|.+.++..+.-++.-.+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+ .+.+.|+-.+.......-
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~-~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISL-IKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999999999999999999999866 699999999999999999
Q ss_pred HHhhhcccc-hhHHHHHH-HHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccC
Q psy10046 276 SIAFWFEKK-RGLACSLG-STGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIMRD 339 (805)
Q Consensus 276 ~l~~~~p~~-rg~a~gi~-~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~~~ 339 (805)
+++..+|++ .++...+. +.+.++|.++.+.++|.+.++.|.+.+|++++.+.++..++.++..+
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 999999855 56666664 67889999999999999999999999999999888877777766543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=112.83 Aligned_cols=142 Identities=15% Similarity=0.036 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHH
Q psy10046 658 LHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGV 737 (805)
Q Consensus 658 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i 737 (805)
+.|+.++++.++..++.......++.+..+.+.+....+++.+.+.+...++.+++|+++|| ++||+++.++.++.++
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr--~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS--FPKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc--cCCchhhHHHHHHHHH
Confidence 45667777777766665555556666677889999999999999999999999999999999 9999999999988877
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCCC
Q psy10046 738 STALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805 (805)
Q Consensus 738 ~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ia 805 (805)
+.+++. ...+. ++.-++.|++.+...+...+++.+.+|+++|+.++|+..+...+|.++||.++
T Consensus 81 ~~~~~~-~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lg 144 (393)
T PRK11195 81 GCLLML-FGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLG 144 (393)
T ss_pred HHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766554 23333 34456789999999999999999999999999999999999999999998763
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=103.79 Aligned_cols=132 Identities=18% Similarity=0.113 Sum_probs=95.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHH-HHHHH-HHHHHHHHHHHh--cCcHHHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFG-CRSM-TIVAG-IISGVGFVLSCF--SRTIEHMYLTFGLLA 262 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~G-rr~v-lii~~-~l~~i~~i~~a~--a~~~~~l~i~~R~l~ 262 (805)
++.+.+|.+..+.++..+++.++..++.++.|+++||++ +|+. +.+.. .+..++.++... ..+...+++ +.++.
T Consensus 242 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 320 (379)
T TIGR00881 242 YLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLI-CLFAL 320 (379)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHH-HHHHH
Confidence 345678999999999999999999999999999999864 3332 22222 222222222222 234444433 35667
Q ss_pred HHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHH
Q psy10046 263 GIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTV 320 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f 320 (805)
|++..+..+....++.+.+| ++||++.|++.....+|..++|.+.|.+.++.||++.|
T Consensus 321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 76655555556667778887 67999999999999999999999999999999998764
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-08 Score=114.76 Aligned_cols=145 Identities=14% Similarity=0.074 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCc-cchhHHHHHHHHH
Q psy10046 658 LHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWL-NVKKTYAACLIGC 735 (805)
Q Consensus 658 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~-gr~~~~~~~~~~~ 735 (805)
+.++.++...+...++++.+..++|.|+.+ .|+++.+++.+...+.+...++.+++|+++|| + |||+++.++.++.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDR--ilGrrr~iliG~il~ 86 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADK--VLGNRMAVMLGALLM 86 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCcHHHHHHHHHHH
Confidence 345555556666677788888899999876 69999999999999999999999999999999 8 9999999888888
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCcc--chhhhhHHHHHHHhhhhccCCCC
Q psy10046 736 GVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD--RFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 736 ~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+++.+++.....+...+.+...+.+++.|...+...+++.|.+|++ +|.+++++.++..++|++++|.+
T Consensus 87 ~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 87 AIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence 8776655421222222333444455666777777888999999875 79999999999999999998865
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-07 Score=107.30 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=107.4
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHH
Q psy10046 190 LNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTI--EHMYLTFGLLAGIGLA 267 (805)
Q Consensus 190 ~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~--~~l~i~~R~l~G~g~g 267 (805)
...++.+. .+...+..+...++.++.++++||+|||+.++++.++.+++.++..+.++. +..++ +-++.+++.+
T Consensus 350 ~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 425 (505)
T TIGR00898 350 LGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTA-LAVLGKFGIT 425 (505)
T ss_pred ccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHH-HHHHHHHHHH
Confidence 34455443 233445566777888999999999999999999999988888887776543 33323 3466677777
Q ss_pred HHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 268 LSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 268 ~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
..++....+..+.+| +.|+.++|+..+...+|.+++|++.+ + ...++...+++.+++.++..++.+++
T Consensus 426 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 778888888889998 66999999999999999999999998 3 44567778888777776666655544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-08 Score=115.25 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHh---cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHH
Q psy10046 659 HFLLVSISTILLFTWFVIPYFYLTDFVTN---QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGC 735 (805)
Q Consensus 659 ~~~~~~i~~~~~~~~~~~~~~~lp~~~~~---~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~ 735 (805)
.++.+++..++-.++++....++|.|+++ .|++..+++.+++.+.++..++.+++|+++||. +|||+++.++.++.
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~-~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRV-WGTKKTMVLGGIVL 89 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-cchHHHHHHHHHHH
Confidence 34555556666678888888999999876 699999999999999999999999999999982 49999999999998
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCcc---chhhhhHHHHHHHhhhhccCCCC
Q psy10046 736 GVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD---RFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 736 ~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~---~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+++.+++. ...+++.+++..++.|++.|...+...+++++.++++ +|+.++++.++..++|+++||++
T Consensus 90 ~~g~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l 160 (475)
T TIGR00924 90 MLGHFMLA-MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL 160 (475)
T ss_pred HHHHHHHH-hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH
Confidence 88887776 3455666666777889999988999999999999865 48899999999999999999865
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-07 Score=118.46 Aligned_cols=145 Identities=10% Similarity=0.013 Sum_probs=113.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc-------------------
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS------------------- 248 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a------------------- 248 (805)
++.+.+|.+...++++.+++.++.++|.++.|+++++.++++.+.++.++.+++.+..++.
T Consensus 251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 330 (1140)
T PRK06814 251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS 330 (1140)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence 3445689999999999999999999999999999998887776666655555555444432
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh-ccchHHHHHHHHH
Q psy10046 249 -RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS-EYGWRGTVLLLSG 325 (805)
Q Consensus 249 -~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-~~gWr~~f~i~~~ 325 (805)
.+.+.+++ .-++.|++.+...+...+++.+..| +.||+++|+.+++..+|..+++++++.+.. ..++.+.|++.++
T Consensus 331 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 331 KRHGWRILI-DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred ccccHHHHH-HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 56666655 4688899999888888888888887 679999999999999999999999998874 4577777776665
Q ss_pred HHHHHHHH
Q psy10046 326 TFFNLCVC 333 (805)
Q Consensus 326 ~~~~~~i~ 333 (805)
+.++.+++
T Consensus 410 ~~~~~~~~ 417 (1140)
T PRK06814 410 ANLIVAIL 417 (1140)
T ss_pred HHHHHHHH
Confidence 54444433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=110.12 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHH-HHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHH
Q psy10046 659 HFLLVSISTILLFTWFVIPYFYLTD-FVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGV 737 (805)
Q Consensus 659 ~~~~~~i~~~~~~~~~~~~~~~lp~-~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i 737 (805)
.+|..++..++.+........++|. +.++.|++..+.+++.+...++.+++.++.|+++|| +|||+++.++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~i 79 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK--FGPRYTTTLSLLLLAI 79 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHH
Confidence 3556666666667777777788886 445799999999999999999999999999999999 9999999999999888
Q ss_pred HHhhhhhhhh-hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 738 STALMPLFAT-NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 738 ~~l~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
+.+++. ... +++.+++..++.|++.+ .+.....++.+.+|+++|+.+.++...+..+|..+++.
T Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 144 (366)
T TIGR00886 80 PCLWAG-LAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF 144 (366)
T ss_pred HHHHHH-HHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 887776 455 77777777888888754 45566778899999999999999998777776665543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=109.91 Aligned_cols=137 Identities=20% Similarity=0.293 Sum_probs=115.0
Q ss_pred HHHHHHHHhhhhhhhhHH-HHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhh
Q psy10046 665 ISTILLFTWFVIPYFYLT-DFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMP 743 (805)
Q Consensus 665 i~~~~~~~~~~~~~~~lp-~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~ 743 (805)
++.++...........+| .+.++.|.+..+.+++.+...++..++.++.|+++|| +|||+++.++.++.+++.+...
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR--FGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCeeeEeehhhhhhhHHHHhh
Confidence 344555555555666777 5556689999999999999999999999999999999 9999999999999888844444
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 744 LFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 744 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.++.+.+++..++.|++.+...+....++.+.+|+++|+.++|+......+|.++||.+
T Consensus 81 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 140 (352)
T PF07690_consen 81 -FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLL 140 (352)
T ss_dssp -HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccch
Confidence 335666888888999999999999999999999999999999999999999999998764
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.9e-07 Score=98.87 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHH
Q psy10046 175 GDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHM 254 (805)
Q Consensus 175 ~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l 254 (805)
.++.....+....+-..++|++..+..++.....+..++|++++|+|.||+|.|++++++++++.+.++..-+...-..+
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f 344 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDF 344 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHH
Confidence 44555444333334456999999999999999999999999999999999999999999999999988887776665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLLLSGTFFNLCV 332 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~~~~i 332 (805)
.+ +.++.|++.|+.++..-++.++..| ++-++.+|++....-.+..+||++.+.+.+..| -|..+....++.++.++
T Consensus 345 ~i-~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~ 423 (438)
T COG2270 345 WI-LGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL 423 (438)
T ss_pred HH-HHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh
Confidence 45 5789999999999999999998887 668999999999999999999999999888654 56666655555555555
Q ss_pred HHHhcc
Q psy10046 333 CGAIMR 338 (805)
Q Consensus 333 ~~~~~~ 338 (805)
+.+...
T Consensus 424 ~L~~v~ 429 (438)
T COG2270 424 LLLRVK 429 (438)
T ss_pred hEEeec
Confidence 444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=104.48 Aligned_cols=157 Identities=10% Similarity=-0.019 Sum_probs=103.7
Q ss_pred HHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH--------HHHHHHHH--HHHHHHHHh-
Q psy10046 180 FSFGLLYIEF-LNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSM--------TIVAGIIS--GVGFVLSCF- 247 (805)
Q Consensus 180 ~~~~~~~p~i-~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~v--------lii~~~l~--~i~~i~~a~- 247 (805)
+.+...+|.+ .+.+|.+..+.++..++..++..++.++.|+++||+++|+. +..+..+. ++..++...
T Consensus 278 ~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (465)
T TIGR00894 278 TILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL 357 (465)
T ss_pred HHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334445555 46689999999999999999999999999999998764421 11111111 111111222
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc---chHHHHHHHH
Q psy10046 248 SRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEY---GWRGTVLLLS 324 (805)
Q Consensus 248 a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~---gWr~~f~i~~ 324 (805)
..+....++ +-++.|++.+...+.......+..|+.+|.++++.+.+..+|+.++|.+.+++.+.. +|+..|++.+
T Consensus 358 ~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~ 436 (465)
T TIGR00894 358 SAAFYLTII-ILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMA 436 (465)
T ss_pred CCchHHHHH-HHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHH
Confidence 233333322 224444444444444444444777889999999999999999999999999987643 4888998888
Q ss_pred HHHHHHHHHHHhc
Q psy10046 325 GTFFNLCVCGAIM 337 (805)
Q Consensus 325 ~~~~~~~i~~~~~ 337 (805)
++.++..++..++
T Consensus 437 ~~~~i~~i~~~~~ 449 (465)
T TIGR00894 437 FVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHeeee
Confidence 7777666555544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-08 Score=109.01 Aligned_cols=138 Identities=15% Similarity=0.011 Sum_probs=115.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhh
Q psy10046 664 SISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMP 743 (805)
Q Consensus 664 ~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~ 743 (805)
.+..++...++......+|.+.++.|.+..+.++..+.+.++..++.++.|+++|| +|||+.+.++.++.+++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr--~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 9 FALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR--SGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH--hCChHHHHHHHHHHHHHHHHHH
Confidence 34444555555566678898888999999999999999999999999999999999 9999999998888888877766
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 744 LFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 744 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
..++.+.+++..++.|++.+...+..+.++.+.+++++|+.+.|+.+....+|.+++|.+
T Consensus 87 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i 146 (392)
T PRK10473 87 -LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL 146 (392)
T ss_pred -HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777888988888888889999999999999999999999988888887754
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-07 Score=108.06 Aligned_cols=159 Identities=17% Similarity=0.151 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q psy10046 178 IAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFG--CRSMTIVAGIISGVGFVLSCFSRTIEHMY 255 (805)
Q Consensus 178 ~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~G--rr~vlii~~~l~~i~~i~~a~a~~~~~l~ 255 (805)
......+++|.+.++++.+..+++.+.++..+...++.++.|+++|+.. ++.++.+++++.+++.+.++++++++.++
T Consensus 313 g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~ 392 (509)
T KOG2504|consen 313 GFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLI 392 (509)
T ss_pred HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3345556678888899999999999999999999999999999999988 55678888888888888999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHH
Q psy10046 256 LTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 256 i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~~~~i~ 333 (805)
+ +-++.|++.|........++.++.. ++...+.|+...+.+++..+||+++|.+.+..| |...|++.++..++..++
T Consensus 393 ~-~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 393 V-FSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 6 5689999999888777777778886 788999999999999999999999999988877 999999998887777766
Q ss_pred HHhc
Q psy10046 334 GAIM 337 (805)
Q Consensus 334 ~~~~ 337 (805)
.++.
T Consensus 472 ~~~~ 475 (509)
T KOG2504|consen 472 LLIL 475 (509)
T ss_pred HHHh
Confidence 6554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-08 Score=109.75 Aligned_cols=143 Identities=13% Similarity=0.012 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHH
Q psy10046 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVST 739 (805)
Q Consensus 660 ~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~ 739 (805)
++.+++.+++..+........+|.+.+++|.+..+++++.+...++..++.+..|++.|| +|+|+++.++.++.+++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r--~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK--LSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHH
Confidence 555566666666666666677888888899999999999999999999999999999999 999999999999988887
Q ss_pred hhhhhh--hhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 740 ALMPLF--ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 740 l~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+++... .++++.+++..++.|++.|...+....++.+..|+++++...++.+.+.++|..+||.+
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i 149 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVV 149 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765322 34677778888899999999999989999999999999999999999999999988765
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.1e-07 Score=103.30 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=104.6
Q ss_pred HHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHH
Q psy10046 185 LYI-EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS---RTIEHMYLTFGL 260 (805)
Q Consensus 185 ~~p-~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a---~~~~~l~i~~R~ 260 (805)
+.| +++..+|.+..++++....+.++..++.++.|++.||+|+|+++.+++++.+++.++..+. .+.+..++ .-+
T Consensus 281 ~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ 359 (495)
T PRK14995 281 LMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWG-LMA 359 (495)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH-HHH
Confidence 444 4455689999999999999999999999999999999999999998988888777655432 35554434 468
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS 312 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~ 312 (805)
+.|+|.|...+.....+....| ++++.+.+++.....+|..+|+.+.+.+.+
T Consensus 360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999888777777776666 779999999999999999999999998765
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.7e-07 Score=91.20 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH-
Q psy10046 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV- 240 (805)
Q Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i- 240 (805)
|.+.++++ ++...+.-....+. ..+.+.||+|+..++.+.+......++..+++|.++||+|++.+.+.+.++..+
T Consensus 267 w~~~iicv-~yyva~fPFi~lg~--~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~ 343 (459)
T KOG4686|consen 267 WVLVIICV-LYYVAWFPFITLGP--MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLL 343 (459)
T ss_pred HHHHHHHH-HHHHHHHHHhhhhH--HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHH
Confidence 55544443 33333333333433 467899999999999999999999999999999999999999887776555444
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc---h
Q psy10046 241 GFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG---W 316 (805)
Q Consensus 241 ~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g---W 316 (805)
+-.+..|.. +.-++. ..+.|+..+.........++...| ++.|++.|..+...++|-++.|+++|+++++-| |
T Consensus 344 ~H~~l~Ft~--lsPy~~-m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~ 420 (459)
T KOG4686|consen 344 GHSGLFFTF--LSPYTS-MTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN 420 (459)
T ss_pred HhhhHHhhh--ccHHHH-HHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence 333333331 111233 356788777666556666777777 669999999999999999999999999998654 4
Q ss_pred HHHHHH-HHHHHHHHHHHHHhc
Q psy10046 317 RGTVLL-LSGTFFNLCVCGAIM 337 (805)
Q Consensus 317 r~~f~i-~~~~~~~~~i~~~~~ 337 (805)
--.|.+ .+.+++....+.+.+
T Consensus 421 le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 421 LEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhe
Confidence 444443 333444433333333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-06 Score=99.60 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=99.8
Q ss_pred HHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Q psy10046 186 YIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR--TIEHMYLTFGLLA 262 (805)
Q Consensus 186 ~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~--~~~~l~i~~R~l~ 262 (805)
.+++. ..+|.+....++......++..++.++++++.+|+|+|+++.++.++.+++.++..+.+ +++.+++ ..++.
T Consensus 251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~-~~~l~ 329 (448)
T PRK09848 251 SLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALV-ALAIA 329 (448)
T ss_pred heeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH-HHHHH
Confidence 34443 34676665555555555677888999999999999999999999998888877776654 4555544 35788
Q ss_pred HHHHHHHHHHHHHHHhhhcc-c-------chhHHHHHHHHHhhHHHhhHHHHHHHHhhccch
Q psy10046 263 GIGLALSYVTAVVSIAFWFE-K-------KRGLACSLGSTGTGFGTTVYAPITSYLISEYGW 316 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~p-~-------~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gW 316 (805)
|+|.+...+...++.++..+ + ++|...+++..+..+|..+|+.+.+.+.+..|+
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999888888888776654 2 359999999999999999999999988765554
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-06 Score=89.65 Aligned_cols=146 Identities=20% Similarity=0.313 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCc--HHHHHHH
Q psy10046 182 FGLLYIEFLNEFGASK--SKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT--IEHMYLT 257 (805)
Q Consensus 182 ~~~~~p~i~~~~g~s~--~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~--~~~l~i~ 257 (805)
.....+.+..+++.+. ...++..+.+.++..++.+++|.++||+|||+.++++...+.++.+++++..+ .+.+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLI- 99 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHH-
Confidence 4445567777777666 47899999999999999999999999999998888888776666777777776 666645
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc--chhHHHHHHHH-HhhHHHhhHHHHHHHHhhc--cchHHHHHHHHHHHH
Q psy10046 258 FGLLAGIGLALSYVTAVVSIAFWFEK--KRGLACSLGST-GTGFGTTVYAPITSYLISE--YGWRGTVLLLSGTFF 328 (805)
Q Consensus 258 ~R~l~G~g~g~~~~~~~~~l~~~~p~--~rg~a~gi~~~-~~~lG~~lgp~i~~~l~~~--~gWr~~f~i~~~~~~ 328 (805)
.|++.|++.+...+...+++.++.|+ +|+...++... ...+|.++++.+++.+... .+||+.|++......
T Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 100 LRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 69999999999999999999999985 78999999888 5888888988887777654 679996666554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=106.90 Aligned_cols=143 Identities=10% Similarity=0.093 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-hcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHH
Q psy10046 655 FLELHFLLVSISTILLFTWFVIPYFYLTDFVT-NQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLI 733 (805)
Q Consensus 655 l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~-~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~ 733 (805)
..++.+++..+..++.+...+.+....+.+.+ ++|++..+.+++.++..++..++++..|++.|| +|.|+++.++.+
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr--~G~R~v~~~~~l 108 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI--FGGRRWTVFSTA 108 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHH
Confidence 34456777666666666666655555666555 689999999999999999999999999999999 999999999998
Q ss_pred HHHHHHhhhhhh----hhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhcc
Q psy10046 734 GCGVSTALMPLF----ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLV 800 (805)
Q Consensus 734 ~~~i~~l~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~i 800 (805)
+.++..+++.+. .++++.+++..++.|++ +..++.....+++.+|++++|+++|+......+|..+
T Consensus 109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l 178 (462)
T PRK15034 109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV 178 (462)
T ss_pred HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence 888888776632 16788888889999997 7788888899999999999999999996555555543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.7e-06 Score=93.22 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=116.5
Q ss_pred HHHHHHHhC-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH---HH
Q psy10046 186 YIEFLNEFG-ASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS-RTIEHMYLTF---GL 260 (805)
Q Consensus 186 ~p~i~~~~g-~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a-~~~~~l~i~~---R~ 260 (805)
.+.+.++.| .+....+.+.++..++=.+.-.+.+++..|+|.|++++++++.+++=..+.++. ++.+..++.. -+
T Consensus 230 ~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~ 309 (400)
T PF03825_consen 230 FSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQL 309 (400)
T ss_pred HHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 345577777 677777877788888888888899999999999999999999999988888877 5544432211 24
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHH-HhhHHHhhHHHHHHHHhhccchHH------HHHHHHHHHHHHHH
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGST-GTGFGTTVYAPITSYLISEYGWRG------TVLLLSGTFFNLCV 332 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~-~~~lG~~lgp~i~~~l~~~~gWr~------~f~i~~~~~~~~~i 332 (805)
+.|+..+..+.+...++.+..| +.|+++.+++.. ..++|.++|..++|++.+++|-+. .+.+.+++.+++.+
T Consensus 310 lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~ 389 (400)
T PF03825_consen 310 LHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILV 389 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999888 569999999876 578999999999999999877443 34444444444444
Q ss_pred HHHh
Q psy10046 333 CGAI 336 (805)
Q Consensus 333 ~~~~ 336 (805)
+.++
T Consensus 390 ~f~~ 393 (400)
T PF03825_consen 390 LFVI 393 (400)
T ss_pred HHHh
Confidence 4433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=109.28 Aligned_cols=146 Identities=15% Similarity=0.100 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHH
Q psy10046 658 LHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCG 736 (805)
Q Consensus 658 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~ 736 (805)
+.++.+++..+.--++++.+..+++.|+++ .|++..+++++...+.+...+..+++|+++|| ++|||+++.++.++.+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr-~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDH-LLGTKRTIVLGAIVLA 92 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhh-ccchHHHHHHHHHHHH
Confidence 345566666667778888888899999875 89999999998888888888888899999997 2799999999999998
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCcc--chhhhhHHHHHHHhhhhccCCCC
Q psy10046 737 VSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD--RFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 737 i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~~~~a~gl~~~~~~ig~~igp~i 804 (805)
++.+.+.+.......+++..++.|++.|...+...+++.+.+|++ +|+.++++.++..++|.++||.+
T Consensus 93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence 887776633222333445677788999999999999999999876 55789999999999999988764
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00019 Score=81.02 Aligned_cols=142 Identities=18% Similarity=0.062 Sum_probs=92.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHH
Q psy10046 655 FLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIG 734 (805)
Q Consensus 655 l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~ 734 (805)
++++.|+..+-..++++... .+......|+...|+++...+.+-+...+.++.|.++..++.+| +|..+.-.+++..
T Consensus 256 ~~q~vflas~alalLY~TVL-sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r--iGlvr~G~~~l~~ 332 (432)
T PF06963_consen 256 FRQPVFLASFALALLYFTVL-SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR--IGLVRAGLWSLWW 332 (432)
T ss_pred HhCHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchhhHHHHHHH
Confidence 45565555544444444433 34567778888899999999999999999999999999999999 8877665544433
Q ss_pred HHH----HHhhhhhhhh-----hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhc
Q psy10046 735 CGV----STALMPLFAT-----NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNL 799 (805)
Q Consensus 735 ~~i----~~l~~~~~~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~ 799 (805)
..+ +...++.... +...++..+++-=+|.=++=-+..-++.|.+|.++||+..|+-+..+++-.+
T Consensus 333 q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~l 406 (432)
T PF06963_consen 333 QWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFEL 406 (432)
T ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence 222 2222221121 1222333333333444444445667889999999999999998877766543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-06 Score=93.71 Aligned_cols=134 Identities=15% Similarity=0.000 Sum_probs=99.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHH---HHh--cCcHHHHHHHH
Q psy10046 184 LLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVL---SCF--SRTIEHMYLTF 258 (805)
Q Consensus 184 ~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~---~a~--a~~~~~l~i~~ 258 (805)
...|.+.+++|.+..++++....+.++..++.++.+++.||+|+|+.+....++.+++.+. ..+ .++.+.+++ .
T Consensus 224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 302 (401)
T PRK11043 224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI-P 302 (401)
T ss_pred HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH-H
Confidence 3456777889999999999888889999999999999999999988765554444443322 222 344444434 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHH
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRG 318 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~ 318 (805)
-++.|++.+..++.......+..|+++|++++++......+..+++.+.+.+.+......
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 467788888888887777667678889999999998888888888888888876443333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-07 Score=105.93 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=110.9
Q ss_pred hhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q psy10046 677 PYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTC 756 (805)
Q Consensus 677 ~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 756 (805)
....+|.+.++.|.++.+.+++.+...++..++.+++|+++|| ++||+++..+.++.+++.+++. ...+++.+++..
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 86 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS--FGRKPVILGGTLVFALAAVACA-LAQTIDQLIYMR 86 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh--cCChHHHHHHHHHHHHHHHHHH-HHccHHHHHHHH
Confidence 3456788888899999999999999999999999999999999 9999999999988888888776 456777778888
Q ss_pred HHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 757 LSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 757 ~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
++.|++.+...+....++.+.+++++|+.++|+.+....+|.+++|.+
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999988888889999999999999999999999999999888764
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=105.05 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=110.7
Q ss_pred hHHHHHHhcCCChhh-HHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q psy10046 680 YLTDFVTNQGLSKEE-ATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLS 758 (805)
Q Consensus 680 ~lp~~~~~~G~s~~~-a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l 758 (805)
-.|.+.+++|+++.+ .+.+.+.+..+-+++.+.+|+++|| +|.|+++.++.+..+++.+++. +.++...+.+.-++
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr--lG~K~vL~l~~l~Wsl~t~L~~-fa~Sl~~L~i~R~l 124 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY--LRYKPVLVLQALSFVCVWLLLL-LGTSVWHMQLMEVF 124 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345555579999999 9999999999999999999999999 9999999999999999988888 57788889999999
Q ss_pred HhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 759 FGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 759 ~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+|++.|+.+ ....++...+|+++|+++.|+.+....+|.++++++
T Consensus 125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L 169 (511)
T TIGR00806 125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL 169 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 888999999999999999999999999999998875
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-07 Score=103.57 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=108.5
Q ss_pred HHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHH
Q psy10046 671 FTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYW 750 (805)
Q Consensus 671 ~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~ 750 (805)
..........+|.+.++.|.++.+.+++.+...++..++.++.|+++|| ++||+.+.++.++.+++.+.+. ..++++
T Consensus 21 ~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr--~grr~~~~~~~~~~~~~~~~~~-~~~~~~ 97 (394)
T PRK11652 21 QMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR--VGRRPVILVGMSIFILGTLVAL-FAHSLT 97 (394)
T ss_pred HHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh--cCChHHHHHHHHHHHHHHHHHH-HHccHH
Confidence 3333334445777888899999999999999999999999999999999 9999999988888887777665 456777
Q ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 751 ALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 751 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
.+++..++.|++.+...+....+..+.++.++++.+.++.++...+|.++||.+
T Consensus 98 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 98 VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888988887777777788888888999999999988888888877764
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.3e-06 Score=88.51 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=134.6
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHHHHHHHHH
Q psy10046 159 GWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFG-CRSMTIVAGII 237 (805)
Q Consensus 159 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~G-rr~vlii~~~l 237 (805)
+..|.+.+...+-. ...|+.-..+|.+..|-|+|..+.|+..++..+......+....+.+|.. +|+..++.+++
T Consensus 208 ~~aW~vtLfmGlqS----~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~ 283 (395)
T COG2807 208 PLAWQVTLFMGLQS----LLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL 283 (395)
T ss_pred chhHHHHHHHHhhH----HHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 34465544333322 23344444579999999999999999999999999999999999999755 77888888888
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc-
Q psy10046 238 SGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE--KKRGLACSLGSTGTGFGTTVYAPITSYLISEY- 314 (805)
Q Consensus 238 ~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p--~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~- 314 (805)
+.++.+.+.+.+....++- -++.|+|.|.+++.+...+..-.. ++-+...++.+....+=..+||.+.|++.+..
T Consensus 284 ~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 284 MLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred HHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 8888888878766555423 378999999999999999885553 55677777777777777889999999999875
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcc
Q psy10046 315 GWRGTVLLLSGTFFNLCVCGAIMR 338 (805)
Q Consensus 315 gWr~~f~i~~~~~~~~~i~~~~~~ 338 (805)
+|+..++..+...+++.++.+..-
T Consensus 362 sw~~~~~~l~~~~i~m~i~Gl~a~ 385 (395)
T COG2807 362 SWSAPLVLLALATLLMLIFGLRAG 385 (395)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcc
Confidence 599998888887777777766653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-06 Score=92.53 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---hHHHHH-HHHHHHHHHHHHHhcCcHHHH
Q psy10046 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGC---RSMTIV-AGIISGVGFVLSCFSRTIEHM 254 (805)
Q Consensus 179 ~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Gr---r~vlii-~~~l~~i~~i~~a~a~~~~~l 254 (805)
.+.+...+|.+.++.|.+.. .+...++..++..++ .++++||+.| |+.... ..++.++..++.++..+....
T Consensus 208 ~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~ 283 (368)
T TIGR00903 208 FDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLAL 283 (368)
T ss_pred HHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 33444566777788888754 555555555544444 4666776543 444333 344444444444555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
++ +-++.|++....++...++.++.+| +.||+++|+.+....+|.+++|++.+.+.. |-...|.+.++..++..+.
T Consensus 284 ~~-~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 284 FA-FIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred HH-HHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 33 3456677777777777788889998 579999999999999999999999988874 7778888887776666665
Q ss_pred HH
Q psy10046 334 GA 335 (805)
Q Consensus 334 ~~ 335 (805)
.+
T Consensus 361 ~~ 362 (368)
T TIGR00903 361 AL 362 (368)
T ss_pred HH
Confidence 54
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=103.78 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHH
Q psy10046 659 HFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVS 738 (805)
Q Consensus 659 ~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~ 738 (805)
...++++..++...--+.....++..-..++.++...|++...+.+..+++++++|++.|| ++|++++.++..+.+++
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr--yNR~~v~~vG~~iW~~A 111 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR--YNRKRVIAVGIFIWTLA 111 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh--cCcceEEeeHHHHHHHH
Confidence 3445555555555544444444444444579999999999999999999999999999999 99999999999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 739 TALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 739 ~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
.++-. +...+|.+.++=.+.|+|-+...++.+.+++|.++.++|+..+|++++...+|+.+|-+
T Consensus 112 v~~~~-fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~v 175 (493)
T KOG1330|consen 112 VFASG-FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYV 175 (493)
T ss_pred HHHHH-HHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEE
Confidence 98887 45889999999999999999999999999999999999999999999999888887644
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-07 Score=104.83 Aligned_cols=127 Identities=11% Similarity=0.006 Sum_probs=107.3
Q ss_pred hhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy10046 675 VIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLF 754 (805)
Q Consensus 675 ~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 754 (805)
.....-+|.+.++.|.+...+++.++.+.++..++.++.|+++|| +|||+++..+.++.+++.++.. ..++++.+++
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr--~Grr~~l~~~~~~~~~~~~~~~-~a~~~~~l~~ 109 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR--IGRRPVLITGALIFTLACAATL-FTTSMTQFLI 109 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH--cCchHHHHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 333344556667789999999999999999999999999999999 9999999999888888877766 4667888888
Q ss_pred HHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 755 TCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 755 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
.-++.|++.+...+..+.++.+.++.++++.++|+.+....+|.++||.+
T Consensus 110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 159 (413)
T PRK15403 110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLS 159 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776666677888899999999999999999999999888765
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-06 Score=97.21 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=96.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHH
Q psy10046 187 IEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF-----SRTIEHMYLTFGLL 261 (805)
Q Consensus 187 p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~-----a~~~~~l~i~~R~l 261 (805)
+++.+...-+....+++.++..++..++.+++++++||+|+|+.+++++++.+++.+...+ ..+.+.+++ .-++
T Consensus 255 ~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~l 333 (473)
T PRK10429 255 IYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVI-AGIL 333 (473)
T ss_pred eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHH-HHHH
Confidence 3444444335566777777777889999999999999999999999888776666555432 234555544 4578
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--------cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccch
Q psy10046 262 AGIGLALSYVTAVVSIAFWFE--------KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGW 316 (805)
Q Consensus 262 ~G~g~g~~~~~~~~~l~~~~p--------~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gW 316 (805)
.|++.+...+...+++++..+ ++.|..+++...+.-+|..+++.+.|++.+..|+
T Consensus 334 ~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 334 LNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 889988888888888886643 2256688999999999999999999998875544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-05 Score=86.23 Aligned_cols=129 Identities=22% Similarity=0.160 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy10046 204 GSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEK 283 (805)
Q Consensus 204 ~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~ 283 (805)
.-+-.+...+..+++.++..|+..+.=+.+..++.+++.++.+++++.+.-+++ -++.+++.|..-..-..+.+ ++++
T Consensus 65 lladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~G-v~las~ssg~GE~tfL~lt~-~y~~ 142 (402)
T PF02487_consen 65 LLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLG-VVLASLSSGLGEVTFLSLTH-FYGK 142 (402)
T ss_pred HHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHH-HHHHhhhhhhhHHHHHHHHH-hcCc
Confidence 333344455555666677788775555566667888889999999998876564 57778877766655555443 4443
Q ss_pred chhHHHHHHHHHhhHHHhhHHHHHHHHhhccch--HHHHHHHHHHHHHHHHHHHhcc
Q psy10046 284 KRGLACSLGSTGTGFGTTVYAPITSYLISEYGW--RGTVLLLSGTFFNLCVCGAIMR 338 (805)
Q Consensus 284 ~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gW--r~~f~i~~~~~~~~~i~~~~~~ 338 (805)
..++.|..+.+.++++|+.....+.. .|+ |..+++...+.++.++..++..
T Consensus 143 ---~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L 195 (402)
T PF02487_consen 143 ---SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLL 195 (402)
T ss_pred ---cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788999999999999988877766 555 6677776666555555444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-06 Score=92.18 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc-----------CcH
Q psy10046 184 LLYIEFLNEFGASKSKTAWIGSLFM-AVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS-----------RTI 251 (805)
Q Consensus 184 ~~~p~i~~~~g~s~~~~~l~~s~~~-lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a-----------~~~ 251 (805)
...|.+.+++|.+..+++.+.+++. ++..++.+++|+++||+|||+.+++++++.+++..+..+. ++.
T Consensus 230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 3445566669999999998887766 6788999999999999999999888888887776655442 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhh
Q psy10046 252 EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTG 297 (805)
Q Consensus 252 ~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~ 297 (805)
+.+++ +.++.|++.+...+...+++.+.+| ++||+.+|++++..+
T Consensus 310 ~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFL-TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHH-HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 54534 5688899999999999999999887 779999999887654
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=91.54 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc---CcHH-----
Q psy10046 181 SFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS---RTIE----- 252 (805)
Q Consensus 181 ~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a---~~~~----- 252 (805)
....+...+.++-|++..++.++.....+...+..+++..+.||+|||+.+++++.+..+..++.... .+..
T Consensus 288 ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (485)
T KOG0569|consen 288 AIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLS 367 (485)
T ss_pred eeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33444457888999999999999999999999999999999999999999999998888777665443 1111
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 253 HMYLTFGLLAGIGLALS-YVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 253 ~l~i~~R~l~G~g~g~~-~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
.+.+++-++..++.+.. -|...-+.+|.+| ..|+.++++..+...++.++-......+.+..|= +.|.+..+.+++.
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~ 446 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIF 446 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 12233334444444433 3455556669998 6799999998888887777766666666666665 6677777777777
Q ss_pred HHHHHhccCC
Q psy10046 331 CVCGAIMRDP 340 (805)
Q Consensus 331 ~i~~~~~~~p 340 (805)
++..++..|.
T Consensus 447 ~i~~~~~lPE 456 (485)
T KOG0569|consen 447 LIYLYRYLPE 456 (485)
T ss_pred HHHHHHhCcc
Confidence 7777776654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-06 Score=94.84 Aligned_cols=128 Identities=19% Similarity=0.335 Sum_probs=107.0
Q ss_pred HHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHH
Q psy10046 187 IEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR--TIEHMYLTFGLLAG 263 (805)
Q Consensus 187 p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~--~~~~l~i~~R~l~G 263 (805)
+++.++ +|.+ ...+++..++.++..++.++++++++|+|+|+.+.++.++.+++.++..+.+ +.+.+++ .-++.|
T Consensus 249 ~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~l~g 326 (428)
T PF13347_consen 249 PYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLI-LFILAG 326 (428)
T ss_pred HHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHH-HHHHhH
Confidence 445544 5544 6778888899999999999999999999999999999999999999888875 7777766 468999
Q ss_pred HHHHHHHHHHHHHHhhhcc--------cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccch
Q psy10046 264 IGLALSYVTAVVSIAFWFE--------KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGW 316 (805)
Q Consensus 264 ~g~g~~~~~~~~~l~~~~p--------~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gW 316 (805)
++.+..++...+++++..+ ++.|..+|++....-+|..+++.+.+.+....|+
T Consensus 327 i~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 327 IGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 9999999888888887664 2258999999999999999999999988765443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-05 Score=87.66 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=127.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC
Q psy10046 171 INMAGDGIAFSFGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR 249 (805)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~ 249 (805)
..|+-.|...+.+.+++.+..+ .|.+..+.....+.+..+.++|.++..++..|+-..+.+.+..++..+.++..++.+
T Consensus 244 ~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~ 323 (422)
T COG0738 244 AIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG 323 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444446666666666777777 788999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHH
Q psy10046 250 TIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFN 329 (805)
Q Consensus 250 ~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~ 329 (805)
+...++. -++.|++.+..+|...+....-.+++-.. .+..-....+|+++.|++.|++.+..|-...+.+...++.+
T Consensus 324 g~v~~~~--l~~ig~F~simfPTIfslal~~l~~~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l 400 (422)
T COG0738 324 GVVALYA--LFLIGLFNSIMFPTIFSLALKNLGEHTSV-GSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL 400 (422)
T ss_pred ChHHHHH--HHHHHHHhHHHHHHHHHHHHhccCccccc-cceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9888755 37889999999999999888777744332 34444556688999999999999999988887754444444
Q ss_pred HH
Q psy10046 330 LC 331 (805)
Q Consensus 330 ~~ 331 (805)
..
T Consensus 401 yV 402 (422)
T COG0738 401 YV 402 (422)
T ss_pred HH
Confidence 43
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.5e-07 Score=97.23 Aligned_cols=149 Identities=8% Similarity=0.081 Sum_probs=120.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhC--ChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFG--CRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIG 265 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~G--rr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g 265 (805)
.+.+.+..+..+.++..--..+.++++..+.|.++||++ |-.....++++.++.+.+..+++++.++++ -++..|++
T Consensus 296 wm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~v-p~~~l~~~ 374 (464)
T KOG3764|consen 296 WMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWV-PNFGLGFG 374 (464)
T ss_pred HHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhh-hhHHHHHH
Confidence 356778866779999999999999999999999999999 645556667777777778889999999866 57777888
Q ss_pred HHHHHHHHHHHHhhhcc-c------chhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 266 LALSYVTAVVSIAFWFE-K------KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 266 ~g~~~~~~~~~l~~~~p-~------~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
.+...+...-.+..... + --|...++...++.+|.++||.++|.+.+..|++|...+.++..++...+..++
T Consensus 375 i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 375 IGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776666666664442 2 258899999999999999999999999999999999999888777766655554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-05 Score=90.28 Aligned_cols=119 Identities=9% Similarity=0.029 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH-h-cCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 197 KSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSC-F-SRTIEHMYLTFGLLAGIGLALSYVTAV 274 (805)
Q Consensus 197 ~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a-~-a~~~~~l~i~~R~l~G~g~g~~~~~~~ 274 (805)
....+.+.....++..++.+++++++||+|+|+.+.++.++.++..+... + ..+.+.+++ ..++.|++.+...+...
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~ 341 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFA-LNILFNFIQNLTTPLQW 341 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34445566677788888999999999999999999888876665443322 2 345655545 46889999999888888
Q ss_pred HHHhhhcc--------cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccch
Q psy10046 275 VSIAFWFE--------KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGW 316 (805)
Q Consensus 275 ~~l~~~~p--------~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gW 316 (805)
+++++..+ +..|...+++..+..+|..+|+.++|++.+..|+
T Consensus 342 am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 342 SMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88886653 1246778888889999999999999999876655
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-06 Score=95.41 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=130.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q psy10046 189 FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLAL 268 (805)
Q Consensus 189 i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~ 268 (805)
-.++++-.....|....+...+-.+.-++.++|.+++|+-+++.+++.++++=.+...+..|.|+.+. +-+++|+..+.
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLP-ieilqgit~al 475 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLP-IEILQGITHAL 475 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheee-HHHHHHHHHHH
Confidence 35777777777887777888888888999999999999999999999999999999999999999866 68999999999
Q ss_pred HHHHHHHHHhhhcc-cchhHHHHHHHH-HhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 269 SYVTAVVSIAFWFE-KKRGLACSLGST-GTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 269 ~~~~~~~~l~~~~p-~~rg~a~gi~~~-~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
++.+..++++...| +-|..+.+++.. ..++|-.+|.+|+|.+...+|-|..|++.++.+++++++...+
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999997776 669999999865 6789999999999999999999999999998888777666554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.32 E-value=4e-06 Score=95.99 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCC--CCccchhHHHHH-HHHHH
Q psy10046 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ--PWLNVKKTYAAC-LIGCG 736 (805)
Q Consensus 660 ~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr--~~~gr~~~~~~~-~~~~~ 736 (805)
++.++...+...+++.....+++.|++..|.+...++++.....+.+++..++.|+++|| .++|||+.+.+. .+...
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 334444444455556666778888998999999999999999999999999999999995 238888887764 55555
Q ss_pred HHHhhhhhhhhhH-----------------HHHHHHHHHHhhhhhhhchhhhhhhhhccCccch--hhhhHHHHHHHhhh
Q psy10046 737 VSTALMPLFATNY-----------------WALLFTCLSFGIFFASNFSCTPIILVELVPLDRF--ATAYGLTLLAQGIG 797 (805)
Q Consensus 737 i~~l~~~~~~~~~-----------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--~~a~gl~~~~~~ig 797 (805)
+++++++. ..+. +..++...+..++.....+...++++|.+|++++ +.++++.+.+.++|
T Consensus 86 ~~l~ll~~-~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG 164 (477)
T TIGR01301 86 FAVILIGF-AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIG 164 (477)
T ss_pred HHHHHHHh-CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence 55555542 2221 2223333444567777777888999999997754 67899999999999
Q ss_pred hccCCCC
Q psy10046 798 NLVGPPL 804 (805)
Q Consensus 798 ~~igp~i 804 (805)
+++|+.+
T Consensus 165 ~ilg~~~ 171 (477)
T TIGR01301 165 NVLGYAA 171 (477)
T ss_pred HHHHHHH
Confidence 9888654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-07 Score=85.23 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=88.3
Q ss_pred HHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccC
Q psy10046 700 SYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVP 779 (805)
Q Consensus 700 ~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~ 779 (805)
+...++.+++.++.|++.|| ++||+.+..+.++..++.+.+. ...+.+.+.+..++.|++.+...+....++.|.+|
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~--~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDR--FGRKPVLLVGLFIFVLSTAMFA-LSSNITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred EeehhHHHHHHhhHHHHHhh--cchhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 45567888899999999999 9999999888888877776665 35667777788889999999889999999999999
Q ss_pred ccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 780 LDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 780 ~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+++++.++|+.++...+|..++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~ 106 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPL 106 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHh
Confidence 9999999999999999999998875
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-05 Score=93.42 Aligned_cols=153 Identities=17% Similarity=0.053 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHHHHHHHHhcCc--------HHH
Q psy10046 183 GLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE-KFGCRSMTIVAGIISGVGFVLSCFSRT--------IEH 253 (805)
Q Consensus 183 ~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsD-r~Grr~vlii~~~l~~i~~i~~a~a~~--------~~~ 253 (805)
..+..++...+|.+...+..+...+.....+.++++|.++| ++|+++.+.++.++..++.++.++... ...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 34445667789999999999999999999999999999999 589999999999999999888776421 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-c---chhHHHHHHHHHhhHHHhhHHHHHHHHhhc-------cchHHHHHH
Q psy10046 254 MYLTFGLLAGIGLALSYVTAVVSIAFWFE-K---KRGLACSLGSTGTGFGTTVYAPITSYLISE-------YGWRGTVLL 322 (805)
Q Consensus 254 l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~---~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~-------~gWr~~f~i 322 (805)
++++ -++.++|.|++-+...+...+.++ + +|-..+.++..+.++|..+++++.+++.+. .+|.+.|.+
T Consensus 88 ~l~g-LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i 166 (654)
T TIGR00926 88 DLLG-LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV 166 (654)
T ss_pred HHHH-HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence 3343 356778888889999999997664 2 377788888999999999999999988744 369999999
Q ss_pred HHHHHHHHHHHHHh
Q psy10046 323 LSGTFFNLCVCGAI 336 (805)
Q Consensus 323 ~~~~~~~~~i~~~~ 336 (805)
.+++.++.+++.+.
T Consensus 167 ~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 167 PAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877776666544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-06 Score=98.87 Aligned_cols=123 Identities=9% Similarity=0.036 Sum_probs=99.1
Q ss_pred hhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhh-----hhH
Q psy10046 675 VIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFA-----TNY 749 (805)
Q Consensus 675 ~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~-----~~~ 749 (805)
+.+..+.+.+.+++|++..+.+++.... ....++.++.|++.|| +|+|+++.++.++.+++.+++++.. .+.
T Consensus 44 y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr--~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~ 120 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDY--LGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV 120 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence 4455677777777999999988877653 3334566678999999 9999999999999999888877431 467
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccC
Q psy10046 750 WALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVG 801 (805)
Q Consensus 750 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~ig 801 (805)
+.+.++.++.|++.+..++.....+.+.+| ++||.+.|+..++.++|+++.
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~ 171 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAIL 171 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHH
Confidence 778888888899888877777778888886 788999999999999999754
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0001 Score=84.94 Aligned_cols=120 Identities=11% Similarity=0.063 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 196 SKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT--IEHMYLTFGLLAGIGLALSYVTA 273 (805)
Q Consensus 196 s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~--~~~l~i~~R~l~G~g~g~~~~~~ 273 (805)
+....+++.+++.++..++.+++++++||+|+|+++..+.++.++..++..+.++ ...+++ .-++.|++.+...+..
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~l~ 339 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFV-FIFVIGVLHQLVTPIQ 339 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3445567778888999999999999999999999877655544443333333322 223323 3356777776666655
Q ss_pred HHHHhhhcc-------cc-hhHHHHHHHHHhhHHHhhHHHHHHHHhhccch
Q psy10046 274 VVSIAFWFE-------KK-RGLACSLGSTGTGFGTTVYAPITSYLISEYGW 316 (805)
Q Consensus 274 ~~~l~~~~p-------~~-rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gW 316 (805)
.+++++..+ ++ .|..++.+..+.-+|..+++.++|++....|+
T Consensus 340 ~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 340 WVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556554432 22 35556777788888999999999888765444
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-06 Score=92.75 Aligned_cols=113 Identities=26% Similarity=0.319 Sum_probs=96.2
Q ss_pred CCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhch
Q psy10046 689 GLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFS 768 (805)
Q Consensus 689 G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 768 (805)
+.+...+|++-+.++++..+.++.+|.++|+ +|||.++.++.+..++..+++. ...++..++..=++.|++-| ..+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~--yGRkpvll~c~~~va~s~ll~~-~S~~F~afv~aR~l~Gi~kg-nl~ 139 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDR--YGRKPVLLACLIGVALSYLLWA-LSRNFAAFVLARFLGGIFKG-NLS 139 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhh--hCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccC-chH
Confidence 3355778899999999999999999999999 9999999999999998777666 66777444444566676544 567
Q ss_pred hhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCCC
Q psy10046 769 CTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805 (805)
Q Consensus 769 ~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ia 805 (805)
+..++++|++++++|+.+++.+++..++|-++||+||
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIG 176 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIG 176 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhh
Confidence 7888999999999999999999999999999999986
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-05 Score=86.21 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=88.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhCChHHHHHH-HHHHHHHHHHHHhcCcHHHH-----
Q psy10046 185 LYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE----KFGCRSMTIVA-GIISGVGFVLSCFSRTIEHM----- 254 (805)
Q Consensus 185 ~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsD----r~Grr~vlii~-~~l~~i~~i~~a~a~~~~~l----- 254 (805)
+++++...+|+.....+.+.-+.-+...+.+|+.|..+| |||||+.++.. .++..++.++..++.++..+
T Consensus 54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~ 133 (498)
T KOG0637|consen 54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNE 133 (498)
T ss_pred cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCc
Confidence 346778899999888888888888888888999999999 59988765554 55556666666666443321
Q ss_pred -------HHHHHHHHH-----HHHHHHHHHHHHHHhhhcc-cchhH-HHHHHHHHhhHHHhhHHHHHHH
Q psy10046 255 -------YLTFGLLAG-----IGLALSYVTAVVSIAFWFE-KKRGL-ACSLGSTGTGFGTTVYAPITSY 309 (805)
Q Consensus 255 -------~i~~R~l~G-----~g~g~~~~~~~~~l~~~~p-~~rg~-a~gi~~~~~~lG~~lgp~i~~~ 309 (805)
-++ -++.| ++.-.+....-+++.+... .++.+ +++++..+.++|.++|-.++++
T Consensus 134 ~~~~~~rai~-~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 134 RKPVKPRAIV-LFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred ccccchHHHH-HHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 111 12333 4555677788888887773 33333 9999999999999998877763
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.7e-07 Score=105.76 Aligned_cols=130 Identities=15% Similarity=0.060 Sum_probs=109.3
Q ss_pred hhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhh------
Q psy10046 673 WFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFA------ 746 (805)
Q Consensus 673 ~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~------ 746 (805)
.......-++.+-++++++..+.+++.+.+.++.+++.++.+++.|| .+|++++.++.++.+++.+++.+..
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r--~~r~~~i~~g~ll~~lg~ll~alphf~~~~y 125 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK--LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRY 125 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc--cCcceEEEecHHHHHHHHHHHhChHHhcCCc
Confidence 33444555666667789999999999999999999999999999999 9999999999999888877765321
Q ss_pred -------------------------------------------h-hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccc
Q psy10046 747 -------------------------------------------T-NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDR 782 (805)
Q Consensus 747 -------------------------------------------~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~ 782 (805)
. .+..+++.-++.|+|.+..+++...++.|.+|+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~ 205 (633)
T TIGR00805 126 SYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN 205 (633)
T ss_pred cccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc
Confidence 0 13445678889999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhhccCCCC
Q psy10046 783 FATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 783 ~~~a~gl~~~~~~ig~~igp~i 804 (805)
++...|+.++...+|.++|+.+
T Consensus 206 ~~~~~~i~~~~~~iG~~lG~ll 227 (633)
T TIGR00805 206 SPLYIGILESIAVFGPAFGYLL 227 (633)
T ss_pred cHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999998888765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=90.12 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=111.5
Q ss_pred HHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---------hHHHHHHHHHHHHHHHHHHhcCc
Q psy10046 181 SFGLLYIEFL-NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGC---------RSMTIVAGIISGVGFVLSCFSRT 250 (805)
Q Consensus 181 ~~~~~~p~i~-~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Gr---------r~vlii~~~l~~i~~i~~a~a~~ 250 (805)
.+-.++|.+. +-+|.+..+.|++.++..+.+.+..+++|.++|+.-+ |..-.++....+++.++.++.+.
T Consensus 276 ~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~ 355 (466)
T KOG2532|consen 276 LLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD 355 (466)
T ss_pred HHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC
Confidence 3344445544 5689999999999999999999999999999998644 34445556666666666666653
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh-hhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhc---cchHHHHHHHHH
Q psy10046 251 IEH-MYLTFGLLAGIGLALSYVTAVVSIA-FWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISE---YGWRGTVLLLSG 325 (805)
Q Consensus 251 ~~~-l~i~~R~l~G~g~g~~~~~~~~~l~-~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~---~gWr~~f~i~~~ 325 (805)
-.. +.+.+ +..+++..+....+..... +..|++-+..+|+.+....+..+++|.+.+.+... ..|++.|++.++
T Consensus 356 ~~~~~a~~~-l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~ 434 (466)
T KOG2532|consen 356 EHRLLAVIL-LTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG 434 (466)
T ss_pred CcchHHHHH-HHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHH
Confidence 222 11211 2333444444444444444 33889999999999999999999999999999942 479999999998
Q ss_pred HHHHHHHHHHhc
Q psy10046 326 TFFNLCVCGAIM 337 (805)
Q Consensus 326 ~~~~~~i~~~~~ 337 (805)
+.++..++..++
T Consensus 435 i~~~~~i~f~~f 446 (466)
T KOG2532|consen 435 ILIVGNIIFLFF 446 (466)
T ss_pred HHHHhchheeEe
Confidence 888777665555
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.3e-05 Score=84.40 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=99.3
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHH
Q psy10046 193 FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSR--TIEHMYLTFGLLAGIGLALSY 270 (805)
Q Consensus 193 ~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~--~~~~l~i~~R~l~G~g~g~~~ 270 (805)
+|.+.....+.......+..++.+++.++.+|+|+|+++.++.++++++.++..+.+ +.+.+++ +.++.++|.+...
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~-~~~i~~~g~~~~~ 345 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVV-ALIIAGVGTGIAN 345 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH-HHHHHHHHhhccc
Confidence 566677777888888888888899999999999999999999999999999888765 5555544 5789999999888
Q ss_pred HHHHHHHhhhcc--------cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc
Q psy10046 271 VTAVVSIAFWFE--------KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG 315 (805)
Q Consensus 271 ~~~~~~l~~~~p--------~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g 315 (805)
+...+++++... +.-|...++...+.=+|.+++..+.|++....|
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888775432 224778888888888899999988888876544
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-05 Score=78.79 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=70.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q psy10046 184 LLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAG 263 (805)
Q Consensus 184 ~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G 263 (805)
+++-++.+.+|....+++.+....+...++...+.|.|+|+-|||+.-+.-++.+.+.+ +.-.++.+-.+++ .|++.|
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmV-GR~LGG 135 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMV-GRVLGG 135 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEee-hhhhhh
Confidence 33335567788888888887777777788888999999999999996544444443333 2345677888877 599999
Q ss_pred HHHHHHHHHHHHHHh-hhc
Q psy10046 264 IGLALSYVTAVVSIA-FWF 281 (805)
Q Consensus 264 ~g~g~~~~~~~~~l~-~~~ 281 (805)
+..+..+.+--++.. +..
T Consensus 136 iaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 999988887777655 554
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.7e-05 Score=82.38 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchh
Q psy10046 208 MAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRG 286 (805)
Q Consensus 208 ~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg 286 (805)
.+.-.-|.++.+.+.||+|||+.+..++++++++.++...+.+-..+.+ +-|..-++.++.+.+.+.+..|.+| +-|+
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tv-llf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTV-LLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHH-HHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 4455678889999999999999999999999999988776654322211 2233334556667777888889999 6699
Q ss_pred HHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 287 LACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 287 ~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
.+.|......-+|+++.|+|+ +.....-..+..+.+..+++..++.+++
T Consensus 470 tgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence 999999999999999999999 3333334455556666666666665554
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00018 Score=69.66 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=92.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 195 ASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAV 274 (805)
Q Consensus 195 ~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~ 274 (805)
++...-....++....+.+..++.+.+.+++|.|+.++++.+++.+..+.. +-++.+.++++ .++.|++.+..++...
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~-s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPA-SALLGFGAALLWTAQG 111 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHhhhhHHhhHhhh
Confidence 333344456677777788888999999999999999999999998766554 44566666564 7899999999999999
Q ss_pred HHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHh
Q psy10046 275 VSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLI 311 (805)
Q Consensus 275 ~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~ 311 (805)
.++.+... +++++..+++......+.++|.++..++.
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776 66999999999988888888887776554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00027 Score=82.61 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=119.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH-HhCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHHH
Q psy10046 170 FINMAGDGIAFSFGLLYIEFLN-EFGASK---SKTAWIGSLFMAVPLLLGPVASAFVEKFGC-RSMTIVAGIISGVGFVL 244 (805)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~i~~-~~g~s~---~~~~l~~s~~~lg~~ig~l~~G~LsDr~Gr-r~vlii~~~l~~i~~i~ 244 (805)
++.++.....+....+.|.... -|+-+. ...++....+.++..++..+.|.+.-+++| |+.++++.++..+++.+
T Consensus 317 vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Ga 396 (599)
T PF06609_consen 317 VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGA 396 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 3333333333455555565544 344443 356788888999999999999999998886 44556777666665444
Q ss_pred HHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh---------
Q psy10046 245 SCFS--RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS--------- 312 (805)
Q Consensus 245 ~a~a--~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~--------- 312 (805)
++.. +|.... +++-++.|+|.|..............| ++.|.+.|+......+|+.+|..+...+..
T Consensus 397 ma~~~~~n~~~~-i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~ 475 (599)
T PF06609_consen 397 MAAVRPDNKNAA-IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPK 475 (599)
T ss_pred HHHccCCCcchH-HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHH
Confidence 4433 444444 346789999999877777666665556 679999999999999988888777644331
Q ss_pred -----------------------------------------------------ccchHHHHHHHHHHHHHHHHHHHhccC
Q psy10046 313 -----------------------------------------------------EYGWRGTVLLLSGTFFNLCVCGAIMRD 339 (805)
Q Consensus 313 -----------------------------------------------------~~gWr~~f~i~~~~~~~~~i~~~~~~~ 339 (805)
..++|++|+....++++.+++.+++.+
T Consensus 476 ~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d 555 (599)
T PF06609_consen 476 YVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGD 555 (599)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 014689999888888888888888876
Q ss_pred Cch
Q psy10046 340 PEW 342 (805)
Q Consensus 340 p~~ 342 (805)
.+.
T Consensus 556 ~~~ 558 (599)
T PF06609_consen 556 IDK 558 (599)
T ss_pred hHH
Confidence 643
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.4e-05 Score=86.79 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=105.4
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc----------CcHHHHHHHHHH
Q psy10046 191 NEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS----------RTIEHMYLTFGL 260 (805)
Q Consensus 191 ~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a----------~~~~~l~i~~R~ 260 (805)
..+|.++...|++.....++..++..+.+++.+|++.|+++.++.++.+++.+...+. ++.+.+ ++.-+
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~-~~~~~ 359 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV-LGDSI 359 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee-eehhH
Confidence 4689999999999999999999999999999999999999999999998887554311 232222 33467
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc
Q psy10046 261 LAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG 315 (805)
Q Consensus 261 l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g 315 (805)
+.+++.+..+.+...++.+..| +.+|...+++....++|..+++.+++++.++.|
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8899989888888888888887 669999999999999999999999999998776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.3e-05 Score=64.91 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHH
Q psy10046 179 AFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHM 254 (805)
Q Consensus 179 ~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l 254 (805)
.+.+.+++|.++++.++|..+.+++.+...+||.+|.+...++.++..+++.+.+++++.++..+.+++..+.+.+
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3678889999999999999999999999999999999999999999888999999999999999999999887765
|
Note that many members are hypothetical proteins. |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0012 Score=71.43 Aligned_cols=145 Identities=13% Similarity=0.004 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecC-C-CC--ccchhHHHH
Q psy10046 655 FLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACD-Q-PW--LNVKKTYAA 730 (805)
Q Consensus 655 l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~d-r-~~--~gr~~~~~~ 730 (805)
++-+.+..+++.....=.++..-....+.-+.++|++..+-+++..+.--.+++.....|.++. . +. +-|...+-+
T Consensus 262 Lklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~ 341 (510)
T KOG3574|consen 262 LKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRL 341 (510)
T ss_pred HcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHH
Confidence 3333343444444444455555555556667789999888776554444444544444443333 2 10 112222333
Q ss_pred HHHHHHHHHhhh-hhhhh-------hHHHHHH-HHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhc
Q psy10046 731 CLIGCGVSTALM-PLFAT-------NYWALLF-TCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNL 799 (805)
Q Consensus 731 ~~~~~~i~~l~~-~~~~~-------~~~~~~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~ 799 (805)
....+..++..+ +...+ .+..+.+ ...+.+++.-..|....+..+.+.++..-|+-+.+.+....+|+-
T Consensus 342 ~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~ 419 (510)
T KOG3574|consen 342 GGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGN 419 (510)
T ss_pred HHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCC
Confidence 333333333322 21111 1222222 223334444555556677888899999999999999999999874
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.2e-05 Score=88.64 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHH--------HHH-HHHHHHHHHHHHHHHHHhhhCChHHHHH
Q psy10046 163 MVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAW--------IGS-LFMAVPLLLGPVASAFVEKFGCRSMTIV 233 (805)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l--------~~s-~~~lg~~ig~l~~G~LsDr~Grr~vlii 233 (805)
..++..+...|+.+...+..+.+...+.+.+|+.+..... ... +...++..|..+...++|++|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5667777777777777788888888888888775443322 122 2223334466677788999999999999
Q ss_pred HHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHH
Q psy10046 234 AGIISGVGFVLSCFSRT----IEHMYLTFGLLAGI-GLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPIT 307 (805)
Q Consensus 234 ~~~l~~i~~i~~a~a~~----~~~l~i~~R~l~G~-g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~ 307 (805)
+++++++..+..+...| ...+++.+ .+..+ +.-+.-.....+-++.|| +-|+.+-|+..+..-+|.++|....
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y-~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F 462 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLY-SLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGF 462 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehH-HHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHh
Confidence 99999999999888766 22222212 22222 222233444455569999 5699999999999999999999999
Q ss_pred HHHhh-----ccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 308 SYLIS-----EYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 308 ~~l~~-----~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
.++.+ ..|.+++|++.++..++..+..+++
T Consensus 463 ~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 463 LYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred hHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 99998 7899999999988887777666655
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.019 Score=65.86 Aligned_cols=125 Identities=8% Similarity=-0.047 Sum_probs=89.8
Q ss_pred HHHHHHhCC-----ChhHHHHHHHHHHHHHHHH-HHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc----Cc------
Q psy10046 187 IEFLNEFGA-----SKSKTAWIGSLFMAVPLLL-GPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS----RT------ 250 (805)
Q Consensus 187 p~i~~~~g~-----s~~~~~l~~s~~~lg~~ig-~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a----~~------ 250 (805)
-.+.+.+.+ ....+.++-+...+.+++. .++.+++++|++|++++.+....+.+..++.++. .+
T Consensus 27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~ 106 (472)
T TIGR00769 27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA 106 (472)
T ss_pred HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence 456666655 3467889988888877777 8999999999999999888877777776665554 11
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHH
Q psy10046 251 ---------------------IEHMYLTFGLLAGIGLALSYV-TAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPIT 307 (805)
Q Consensus 251 ---------------------~~~l~i~~R~l~G~g~g~~~~-~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~ 307 (805)
.|...+ +=+...+....... .-..++.+.+. ++-.+..+++..+.++|..+++.+.
T Consensus 107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~-FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 107 LADKLLSLLPPGFMGFIAILRIWSFAL-FYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHhhcchhhHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 22344444454444 55666777775 7788899999999999999999998
Q ss_pred HHHhh
Q psy10046 308 SYLIS 312 (805)
Q Consensus 308 ~~l~~ 312 (805)
.++..
T Consensus 186 ~~~~~ 190 (472)
T TIGR00769 186 KYFSK 190 (472)
T ss_pred HHHHH
Confidence 88773
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.9e-05 Score=90.89 Aligned_cols=112 Identities=21% Similarity=0.162 Sum_probs=97.6
Q ss_pred cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhc
Q psy10046 688 QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNF 767 (805)
Q Consensus 688 ~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~ 767 (805)
...+.....+..+++.++.++|.+++|.++|+ +|||.++.+++++..++.++.. +..+++.++++-++.|++.++.+
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~--~GRk~~~~~~~~~~~i~~~~~a-~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR--FGRKPVLLVSLLLFIIFGILTA-FAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhh--cccHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhccchh
Confidence 34566667778888899999999999999999 9999999999999999987766 68899999999999999999999
Q ss_pred hhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 768 SCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
.+..++++|.+++++|+.+..+ ..+...++.++|+
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~ 224 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPA 224 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999 6555555555543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0045 Score=72.20 Aligned_cols=169 Identities=11% Similarity=0.038 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHH-HHHHHHHH
Q psy10046 163 MVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIV-AGIISGVG 241 (805)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii-~~~l~~i~ 241 (805)
.+.++.++..++...+-..+.- .+.--+|.+....+.+.++|++|.++|..+++++.++.-++...+- ...+++..
T Consensus 18 ~l~~~~f~sg~~~L~yEv~~~r---~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~ 94 (521)
T PRK03612 18 LLLAAVFVCAACGLVYELLLGT---LASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGL 94 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333332 2334568888899999999999999999999988743322222111 11111111
Q ss_pred H-----HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhh-ccc
Q psy10046 242 F-----VLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLIS-EYG 315 (805)
Q Consensus 242 ~-----i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~-~~g 315 (805)
+ ...++...+..++..+-++.|+..|+..|....+......++-|...|-......+|.++|.++.++++- .+|
T Consensus 95 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG 174 (521)
T PRK03612 95 SALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG 174 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc
Confidence 1 1111111122222223456677777777776666554433345677888888999999999999887654 678
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy10046 316 WRGTVLLLSGTFFNLCVCG 334 (805)
Q Consensus 316 Wr~~f~i~~~~~~~~~i~~ 334 (805)
-..+.++.+.+.+++.++.
T Consensus 175 ~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 175 LIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7666666666555544433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.6e-06 Score=94.78 Aligned_cols=108 Identities=20% Similarity=0.331 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHHHhhhhhhhchhh
Q psy10046 694 EATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFAT---NYWALLFTCLSFGIFFASNFSCT 770 (805)
Q Consensus 694 ~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~ 770 (805)
..++..+...++.++|.+++|+++|| +|||+.+.++.++..++.++.. ..+ +++.+.+.-++.|++.|...++.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~--~GRk~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADR--YGRKPALIISALLMIIGSILIA-FAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccc--cccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 45678889999999999999999999 9999999999999888888776 455 78888888899999999999999
Q ss_pred hhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 771 PIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 771 ~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.++.|..|+++|+...++......+|.+++..+
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~ 157 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLI 157 (451)
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998888877654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0042 Score=70.82 Aligned_cols=108 Identities=12% Similarity=-0.079 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhh-----------hhhhHHHHHHHHHHHhhh
Q psy10046 694 EATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPL-----------FATNYWALLFTCLSFGIF 762 (805)
Q Consensus 694 ~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~-----------~~~~~~~~~~~~~l~G~~ 762 (805)
....++..++++..+||.+..|..-. ..+.++++. ..++=.+..-++.+ ...+.+..++.++++|+.
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~~p-~~~~~~l~i-~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFMWP-DEDSRWLPI-LSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeEee-CCCccchHH-HHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 44567888999999999977664322 011123222 22221122111110 113456667778999999
Q ss_pred hhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 763 FASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 763 ~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
-|-..++...+.++.++++++-.+-.+...+-.+|-++|..
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV 426 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888898898888888888888888887777654
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0004 Score=79.95 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=99.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hCChHHHHHHHHHHHHHH-
Q psy10046 169 FFINMAGDGIAFSFGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEK----FGCRSMTIVAGIISGVGF- 242 (805)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr----~Grr~vlii~~~l~~i~~- 242 (805)
+++.++.....+++...+|.+.++ .|.+..+++.+.+.+.++.+++.+++|+++|| +.+|..+...+.++.+..
T Consensus 279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~ 358 (495)
T KOG2533|consen 279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGA 358 (495)
T ss_pred HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444555556677777888887 56899999999999999999999999999999 677777777776666554
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c-cchhHHHHHHHHHhhHHHhhHHHH-HHHHhhccchHHH
Q psy10046 243 VLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF-E-KKRGLACSLGSTGTGFGTTVYAPI-TSYLISEYGWRGT 319 (805)
Q Consensus 243 i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~-p-~~rg~a~gi~~~~~~lG~~lgp~i-~~~l~~~~gWr~~ 319 (805)
+......+......+ -+..+.+.....+......+... + .++-...++...+.+.+.+++|.+ .+.....++|.+.
T Consensus 359 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~ 437 (495)
T KOG2533|consen 359 ISLLAAAVLPGAYGA-FLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAV 437 (495)
T ss_pred HHHHhhccchHHhHH-HHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhH
Confidence 444344333333221 23333444444555555555443 3 334444455555555554444443 3444556789999
Q ss_pred HHHHHHHHH
Q psy10046 320 VLLLSGTFF 328 (805)
Q Consensus 320 f~i~~~~~~ 328 (805)
|++....++
T Consensus 438 f~~~~~~~~ 446 (495)
T KOG2533|consen 438 FYMLVAACV 446 (495)
T ss_pred HHHHHHHHH
Confidence 965554333
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=7e-05 Score=87.55 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhh
Q psy10046 694 EATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPII 773 (805)
Q Consensus 694 ~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~ 773 (805)
+.+++.+...+++.+|.++.|+++|+ +|||+++.++.+...++.++.. .+.+...+.+.-++.|+|.|....+.+.+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~--~GRk~~l~~~~~~~~iG~ii~~-~a~~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDR--IGRKKTLLLAVVLFLIGAIIIA-LAPSWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhccchhhhhhcchhh
Confidence 34789999999999999999999999 9999999999999999888877 56789999999999999999999999999
Q ss_pred hhhccCccchhhhhHHHHHHHhhhhccC
Q psy10046 774 LVELVPLDRFATAYGLTLLAQGIGNLVG 801 (805)
Q Consensus 774 ~~~~~~~~~~~~a~gl~~~~~~ig~~ig 801 (805)
++|+.|++.||...++......+|.++|
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~ 194 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLG 194 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.3e-05 Score=85.68 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=115.3
Q ss_pred chhhHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHh-cC----CChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhH
Q psy10046 654 MFLELH-FLLVSISTILLFTWFVIPYFYLTDFVTN-QG----LSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKT 727 (805)
Q Consensus 654 ~l~~~~-~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G----~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~ 727 (805)
.++.|+ ++.++..=+.=-++++++...+..|+.. .+ +|+.++.-+++.++...-+..+++||++||. +|+|++
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~-LG~~~t 94 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV-LGTRRT 94 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHH
Confidence 344433 3333333344456666666666666553 44 9999999999998888888899999999993 699999
Q ss_pred HHHHHHHHHHHHhhhhhhh-hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCc--cchhhhhHHHHHHHhhhhccCCCC
Q psy10046 728 YAACLIGCGVSTALMPLFA-TNYWALLFTCLSFGIFFASNFSCTPIILVELVPL--DRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 728 ~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
++.+.++..++.+++.... .+...+++.++++++|.|..=+....++.+.+|+ .+|-.+++++++..++|++++|.+
T Consensus 95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i 174 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII 174 (498)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence 9999999999988887443 4677788888888899999999999999999983 346778888888888998888754
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0046 Score=68.31 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=113.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh-hhCChHHHHHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHH
Q psy10046 187 IEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE-KFGCRSMTIVAGIISGVGFVL---SCFSRTIEHMYLTFGLLA 262 (805)
Q Consensus 187 p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsD-r~Grr~vlii~~~l~~i~~i~---~a~a~~~~~l~i~~R~l~ 262 (805)
|+=-+-||++..+...+......|..+|-.+.|++.. +.+.++...+++.+..++..+ .++..+.+.+..+ -++.
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~-~~l~ 311 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPG-VFLL 311 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHH
Confidence 4445679999999999999999999999999999877 677888777777776666554 3445677777664 5899
Q ss_pred HHHHHHHHHHHHHHHhhhc-ccchhHHHHHHHHHhhHHHhhHHHHHHHHhhc----------cchHHHHHHHHHHHHHHH
Q psy10046 263 GIGLALSYVTAVVSIAFWF-EKKRGLACSLGSTGTGFGTTVYAPITSYLISE----------YGWRGTVLLLSGTFFNLC 331 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~-p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~----------~gWr~~f~i~~~~~~~~~ 331 (805)
|++.|.+.....+.+.+.. +.+-|..+|.|.....++..++-.++|.+.+. .++-.+|.+.++..++.+
T Consensus 312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~ 391 (403)
T PF03209_consen 312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAAL 391 (403)
T ss_pred HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 9999988777777776666 47799999999999999999999999887652 246666766666555554
Q ss_pred HHH
Q psy10046 332 VCG 334 (805)
Q Consensus 332 i~~ 334 (805)
++.
T Consensus 392 ~ll 394 (403)
T PF03209_consen 392 VLL 394 (403)
T ss_pred HHH
Confidence 443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0006 Score=57.79 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH
Q psy10046 175 GDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIIS 238 (805)
Q Consensus 175 ~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~ 238 (805)
.++.....-++++.+.++.|++..++|.+.++..+...++++++|.++||+|+++.++....++
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3444445566677778889999999999999999999999999999999999988776665443
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.029 Score=62.22 Aligned_cols=109 Identities=14% Similarity=0.016 Sum_probs=72.0
Q ss_pred hhhHHHHHHH-HHHHHHhhhheeeeecCCCCccchhHHHHHHH-HHHHHHhh------hhhhhhhHHHHHHHHHHHhhhh
Q psy10046 692 KEEATSILSY-IGVTNTVGMVALGWACDQPWLNVKKTYAACLI-GCGVSTAL------MPLFATNYWALLFTCLSFGIFF 763 (805)
Q Consensus 692 ~~~a~~~~~~-~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~-~~~i~~l~------~~~~~~~~~~~~~~~~l~G~~~ 763 (805)
...+-++... +++...+|.++..|+... ++|++.....+ ...+-++. .+....+.+..++...++|+..
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~---~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsn 357 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWP---DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSN 357 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCC---CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhcc
Confidence 4444455555 889999999888888777 33333222221 11111222 1112345567788889999998
Q ss_pred hhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 764 ASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 764 g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
|-...+...+.++.++++++-.+-.+..++-..|-.+|..
T Consensus 358 GYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 358 GYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL 397 (406)
T ss_pred chHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888888889999998888777777777777777776654
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0024 Score=68.33 Aligned_cols=122 Identities=8% Similarity=0.023 Sum_probs=79.4
Q ss_pred HhCCChhHHH-HHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q psy10046 192 EFGASKSKTA-WIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSY 270 (805)
Q Consensus 192 ~~g~s~~~~~-l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~ 270 (805)
+.+++..+.. =+.-+..-.+.++-.+.=.+.|..-.|+++++-.+.+.+..++.-+.++.+.+=+ +-++.|...+.-
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQv-lE~FyG~~tAaE- 112 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQV-LEFFYGPATAAE- 112 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheee-ehhhcChHHHHH-
Confidence 3455555443 1222222334444555556889888999988887777777778888888887744 456666654432
Q ss_pred HHHHHHHh-hhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc
Q psy10046 271 VTAVVSIA-FWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYG 315 (805)
Q Consensus 271 ~~~~~~l~-~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g 315 (805)
.+..+++- .+.|+++.++.+...++...|-.+|..++..++....
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~ 158 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET 158 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc
Confidence 23333333 3345778888888888888888888888888776433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00066 Score=71.05 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=94.0
Q ss_pred hhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhh------
Q psy10046 673 WFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFA------ 746 (805)
Q Consensus 673 ~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~------ 746 (805)
..+.+..|-|.+-+..|+|..+...+.....++..+| ++.|.+.|+ ++++.++.++.+...++...++...
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~--~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~ 93 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR--FGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS 93 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHhCccCc
Confidence 4455667778777779999999999888888888765 888999999 9999999988888888877766432
Q ss_pred hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhcc
Q psy10046 747 TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLV 800 (805)
Q Consensus 747 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~i 800 (805)
.+.|.+.++.++.|.+.+...........+.+| ++||++.|+.-.+.++++.+
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAI 146 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHH
Confidence 245556656666666544444554555557786 58999999999999988875
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00049 Score=58.29 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHH
Q psy10046 663 VSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIG 734 (805)
Q Consensus 663 ~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~ 734 (805)
+-+..++.+.+.....-|+|.|+++.|+++.+.+.+.++..+..+++.+++|+++|| +++++........
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk--~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK--FGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCccHHHHHHHHH
Confidence 344556667777778889999999999999999999999999999999999999999 8887776655443
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.062 Score=63.23 Aligned_cols=153 Identities=14% Similarity=0.016 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhcC------------
Q psy10046 183 GLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTIVAGIISGVGFVLSCFSR------------ 249 (805)
Q Consensus 183 ~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vlii~~~l~~i~~i~~a~a~------------ 249 (805)
..++.++..+++.+...+.-.++.+.-...+.+++++.++|- +||-+.+.++.++..++.++..+..
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 455678889999988888889999999999999999999995 6899999999888888755433221
Q ss_pred ----------cH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----c---chhHHHHHHHHHhhHHHhhHHHHHHH
Q psy10046 250 ----------TI---EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE----K---KRGLACSLGSTGTGFGTTVYAPITSY 309 (805)
Q Consensus 250 ----------~~---~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p----~---~rg~a~gi~~~~~~lG~~lgp~i~~~ 309 (805)
+- ..++.+ .-+..+|.|+.-+...++-++-++ + .+...+.++.....+|..++..+..+
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~-l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGA-LYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCcccCcchHHHHHHHHH-HHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 11 123333 334556778877887777776665 1 24477888888899999998888888
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHh
Q psy10046 310 LISEYGWRGTVLLLSGTFFNLCVCGAI 336 (805)
Q Consensus 310 l~~~~gWr~~f~i~~~~~~~~~i~~~~ 336 (805)
+-+..||.+.|.+..+..++.+++.+.
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHHHHc
Confidence 878899999999888766655554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.1 Score=59.03 Aligned_cols=43 Identities=9% Similarity=-0.038 Sum_probs=34.4
Q ss_pred HHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhc
Q psy10046 757 LSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNL 799 (805)
Q Consensus 757 ~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~ 799 (805)
++..+..-..|....++-+.+..|..-|+.+-+.|++.++|+-
T Consensus 413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt 455 (544)
T PF13000_consen 413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT 455 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC
Confidence 3334555666777777888889999999999999999999974
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0022 Score=62.17 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=95.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhcC------CChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHH
Q psy10046 666 STILLFTWFVIPYFYLTDFVTNQG------LSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVST 739 (805)
Q Consensus 666 ~~~~~~~~~~~~~~~lp~~~~~~G------~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~ 739 (805)
.+++.+.++.......-..++..+ +++.....-.++.....++..++.+.+.++ +|.|+.++++.++..+..
T Consensus 4 ~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~--lg~K~sm~lg~~~y~~y~ 81 (156)
T PF05978_consen 4 GFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNK--LGPKWSMILGSLGYAIYI 81 (156)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence 344455555444444444443322 223222234455556667777778888999 999999998888877655
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 740 ALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 740 l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
.... ..+.+.++...++.|++.+..+.....++.+...++.+++..|+...+...+.++|..
T Consensus 82 ~~~~--~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~ 143 (156)
T PF05978_consen 82 ASFF--YPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNL 143 (156)
T ss_pred HHHH--hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5543 3456778889999999999999999999999888999999999999988888777753
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00044 Score=77.95 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=114.5
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHH
Q psy10046 653 SMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACL 732 (805)
Q Consensus 653 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~ 732 (805)
.++.+++.+++++..+++..+.....+++=-++++.|-.+..-|.......++-++.-+..+++++| +|+-+++.+++
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k--iGHv~v~~lgL 443 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK--IGHVNVMYLGL 443 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHH--hcccceeeehh
Confidence 4455566666666666666666666666655667777666655655555566677777888899999 99999999998
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHH-HHHhhhhccCCCC
Q psy10046 733 IGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTL-LAQGIGNLVGPPL 804 (805)
Q Consensus 733 ~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~-~~~~ig~~igp~i 804 (805)
.+.++=++.+. ...++|..+..-++-|+..+..+.....+++.+.|++.++++-|+.. .+.++|--+|..|
T Consensus 444 a~~~~Rf~~~S-~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI 515 (618)
T KOG3762|consen 444 ACNVGRFLYYS-YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI 515 (618)
T ss_pred hHHHHHHHHHH-HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh
Confidence 88888888877 57789989999999999999999999999999999999999999876 4455555555444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0082 Score=67.10 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CcH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-c---chhHHHHHHHHH
Q psy10046 229 SMTIVAGIISGVGFVLSCFS---RTI------EHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-K---KRGLACSLGSTG 295 (805)
Q Consensus 229 ~vlii~~~l~~i~~i~~a~a---~~~------~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~---~rg~a~gi~~~~ 295 (805)
+.++++.+++.+|.++..++ ... +.++++ -++.++|.|+.-+....++++.++ + +|.....++..+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~g-L~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIG-LALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHH-HHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHH-HHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 46777888888888773332 222 456665 478899999999999999997775 2 377888899999
Q ss_pred hhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 296 TGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 296 ~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
.++|..++..+.+++-+++||.+.|++.++..++.++..+.-
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999887777666655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.005 Score=70.00 Aligned_cols=142 Identities=11% Similarity=0.157 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHh--cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccc-hhHHHHHHHHHH
Q psy10046 660 FLLVSISTILLFTWFVIPYFYLTDFVTN--QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNV-KKTYAACLIGCG 736 (805)
Q Consensus 660 ~~~~~i~~~~~~~~~~~~~~~lp~~~~~--~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr-~~~~~~~~~~~~ 736 (805)
.++..+..++....+.....-.=.|++. .+.+...-|+.++...++.++++++.|+...| .+. |+-++++.+++.
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k--~~~~k~Pli~s~ii~~ 113 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK--TGSVKKPLIVSFLIAI 113 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc--cCCcccCHHHHHHHHH
Confidence 4455555555555555444433456665 78888889999999999999999999999998 432 666777777777
Q ss_pred HHHhhhhh---hhh-hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 737 VSTALMPL---FAT-NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 737 i~~l~~~~---~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
++.++... ..+ ..++++++-++.|+|.|. ....-.++++..-.+.|.++++..+..+.+|.++||.+
T Consensus 114 ~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 114 IGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence 77666521 223 556777778888887665 55666778877677888999999888888888888865
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.02 Score=65.63 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=104.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHH-HHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVAS-AFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGL 266 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G-~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~ 266 (805)
++...|+++..+.+...+...+...++.++.. .+...+|-|+++.+|++.-.+..++.+++++.|+++.+ .++. ...
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~-~v~~-~~~ 344 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAA-GVVV-ALA 344 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHH-HHHH-Hhh
Confidence 44567899999999888888888888888776 67778998999999999999999999999999998774 4554 445
Q ss_pred HHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh
Q psy10046 267 ALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS 312 (805)
Q Consensus 267 g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~ 312 (805)
+...+...+.++.+.. +++|+++++....-++.++++|.+-+.+..
T Consensus 345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 6677888888887764 889999999999999999999999887754
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.015 Score=60.79 Aligned_cols=129 Identities=22% Similarity=0.152 Sum_probs=89.1
Q ss_pred HhhhhhhhhHHHHHHhcCCCh--hhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhh-h
Q psy10046 672 TWFVIPYFYLTDFVTNQGLSK--EEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFAT-N 748 (805)
Q Consensus 672 ~~~~~~~~~lp~~~~~~G~s~--~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~-~ 748 (805)
..........+.+....+.+. ...++......+...++.++.|++.|| .|||+.+..+.....+..+....... .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR--YGRRKVLIIGLLLFLLGTLLLALAPNVG 93 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc--ccchHHHHHHHHHHHHHHHHHHhCccch
Confidence 333444445666666666555 467788888888888888999999999 78887776666543333222221222 3
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhccCc-cchhhhhHHHHH-HHhhhhccCC
Q psy10046 749 YWALLFTCLSFGIFFASNFSCTPIILVELVPL-DRFATAYGLTLL-AQGIGNLVGP 802 (805)
Q Consensus 749 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~~~a~gl~~~-~~~ig~~igp 802 (805)
.+.+.+..++.|++.+...+....++.+.+|. ..++...++... ...+|.+++|
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGP 149 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667888888888999999999987 678888888777 4666666665
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0039 Score=74.47 Aligned_cols=129 Identities=16% Similarity=0.071 Sum_probs=96.6
Q ss_pred hhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhh-----
Q psy10046 674 FVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFAT----- 747 (805)
Q Consensus 674 ~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~----- 747 (805)
++++...+..|+.+ .|++...+..++..+....-+..+++|++.|+ ++|+++++.++.++..++.+++.+...
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~-~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~ 81 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADG-WLGKFKTILYLSIVYVVGHALLSFGAIPSSGH 81 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 34445555566554 79999999888888888888899999999998 379999988888887777666543211
Q ss_pred --hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCcc---chhhhhHHHHHHHhhhhccCCC
Q psy10046 748 --NYWALLFTCLSFGIFFASNFSCTPIILVELVPLD---RFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 748 --~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~---~~~~a~gl~~~~~~ig~~igp~ 803 (805)
.....++.+++..+|.|+.-++..+...+.+..+ .+-..+.++++..++|++++++
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~ 142 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTI 142 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455667777888999999999999988743 4667788888888888887754
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.027 Score=61.37 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=84.2
Q ss_pred hhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy10046 675 VIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLF 754 (805)
Q Consensus 675 ~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 754 (805)
..++.| ...+.+|++..+.+.++....+.+++...+.|.+.|| +|||+..++..++.+++++... ..++..+++
T Consensus 53 QGpY~Y--~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~--~Grk~~cl~~cily~~scl~k~--~~~~~~L~~ 126 (354)
T PF05631_consen 53 QGPYLY--ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR--YGRKKACLLFCILYSLSCLTKH--SSNYPVLLL 126 (354)
T ss_pred hcchhH--HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHh--ccccHHHHH
Confidence 334444 2336799999999999999889999999999999999 9999999888888888887543 567888888
Q ss_pred HHHHHhhhhhhhchhhhhhhh-hc----cCccchhhhhHHH
Q psy10046 755 TCLSFGIFFASNFSCTPIILV-EL----VPLDRFATAYGLT 790 (805)
Q Consensus 755 ~~~l~G~~~g~~~~~~~~~~~-~~----~~~~~~~~a~gl~ 790 (805)
.-++.|++....+...-.|+. |. +|.+..+..++..
T Consensus 127 GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~ 167 (354)
T PF05631_consen 127 GRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLA 167 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 889999999988888765554 32 4444445545433
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.015 Score=64.74 Aligned_cols=169 Identities=15% Similarity=0.050 Sum_probs=103.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHHHHHhc-
Q psy10046 171 INMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFG-CRSMTIVAGIISGVGFVLSCFS- 248 (805)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~G-rr~vlii~~~l~~i~~i~~a~a- 248 (805)
++.+..+..++...++......-|.+...+|++..+..++.++++.+.|.+.||.. -|...++......++.+.....
T Consensus 274 ~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t 353 (480)
T KOG2563|consen 274 CYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT 353 (480)
T ss_pred HHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334455555555554455556777788999999999999999999999999976 4556666665555553222211
Q ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc---hHH-HH
Q psy10046 249 ---RTIEHMYLTFGLLAGIGLALSYVTAVVSIA-FWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYG---WRG-TV 320 (805)
Q Consensus 249 ---~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~-~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g---Wr~-~f 320 (805)
...+.++.. -.+.|++..+.+|...-+.. ..+|..-+...|+..+...+-.++-.++.+.+.+..+ |.+ .-
T Consensus 354 ~~~~~~viv~~t-~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (480)
T KOG2563|consen 354 LFLGDSVIVFTT-CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPAN 432 (480)
T ss_pred ccCCceEehhhh-HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccch
Confidence 122233343 35667777777887777766 4468544555666665555555555666666666555 333 33
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q psy10046 321 LLLSGTFFNLCVCGAIMRDP 340 (805)
Q Consensus 321 ~i~~~~~~~~~i~~~~~~~p 340 (805)
+..+...++.+++..++++.
T Consensus 433 i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 433 IFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred hHhHHHHHHHHHHHhhhhhh
Confidence 34444445555555555543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.98 E-value=4.3 Score=46.99 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=73.2
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc---------Cc-------------HH
Q psy10046 196 SKSKTAWIGSLFMA-VPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS---------RT-------------IE 252 (805)
Q Consensus 196 s~~~~~l~~s~~~l-g~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a---------~~-------------~~ 252 (805)
.++.+..+=....+ +..+...+..++++++++.+++-+....+.+..++.++. ++ +.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44556666554555 344556788999999999998887777777666665542 11 11
Q ss_pred HHHHH--------HHHHHHHHHHHHHH-HHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh
Q psy10046 253 HMYLT--------FGLLAGIGLALSYV-TAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS 312 (805)
Q Consensus 253 ~l~i~--------~R~l~G~g~g~~~~-~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~ 312 (805)
+++.. +=++.-+-++...+ .-..+..+.++ ++-.+..+++..+.++|.++++.+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 11122222222222 22444456665 778889999999999999999998888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.89 Score=51.86 Aligned_cols=100 Identities=23% Similarity=0.224 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHh---hhCChHHHHHHHHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHHHH
Q psy10046 207 FMAVPLLLGPVASAFVE---KFGCRSMTIVAGIISGVGFVLSCFS------------------RTIEHMYLTFGLLAGIG 265 (805)
Q Consensus 207 ~~lg~~ig~l~~G~LsD---r~Grr~vlii~~~l~~i~~i~~a~a------------------~~~~~l~i~~R~l~G~g 265 (805)
..+|..++..+++.+++ ++||++.+.++.++..++.++.-+. +++...++ ..++.|++
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~i-i~~l~G~~ 366 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALI-IGFLLGFG 366 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHH-HHHHHhhH
Confidence 34555566666777765 5899999999988888887776543 13334434 57899999
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHH
Q psy10046 266 LALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPIT 307 (805)
Q Consensus 266 ~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~ 307 (805)
-++.......+++...|++|..+.+++..-..++..++-...
T Consensus 367 D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999988899999999998877777766554433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.062 Score=46.23 Aligned_cols=72 Identities=21% Similarity=0.102 Sum_probs=60.7
Q ss_pred hhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhH
Q psy10046 675 VIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNY 749 (805)
Q Consensus 675 ~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~ 749 (805)
+.+.-.+|...++.++|..+++++.+...++-++|.+...++.++ .+++..+..+++.+.+.++.+.+ .++.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ma~-~~~~ 80 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH--SRPRRLLRAGLLLTVLSTAAMAL-THSF 80 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHH-Hhch
Confidence 444557888889999999999999999999999999999999888 77888888888888888888773 3433
|
Note that many members are hypothetical proteins. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.059 Score=60.21 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=91.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCC--CCccchhHHHHH-HHHHHHHHhhhh
Q psy10046 667 TILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ--PWLNVKKTYAAC-LIGCGVSTALMP 743 (805)
Q Consensus 667 ~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr--~~~gr~~~~~~~-~~~~~i~~l~~~ 743 (805)
.+..-+++..=..|++.|++..|.+..-.+.+....-+.+++..++.|..+|| -++|||+-++.. .+...+.+++++
T Consensus 41 a~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig 120 (498)
T KOG0637|consen 41 AAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG 120 (498)
T ss_pred HHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhh
Confidence 33333444445679999999999998888887777778889999999999998 347777765544 333444455444
Q ss_pred hhh-------hh--H--HHHHHHHHHHh-----hhhhhhchhhhhhhhhccCccchhh-hhHHHHHHHhhhhccCCCC
Q psy10046 744 LFA-------TN--Y--WALLFTCLSFG-----IFFASNFSCTPIILVELVPLDRFAT-AYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 744 ~~~-------~~--~--~~~~~~~~l~G-----~~~g~~~~~~~~~~~~~~~~~~~~~-a~gl~~~~~~ig~~igp~i 804 (805)
... .+ . ....+...+.| ++.-......-+++.++...+.+.+ +++.+..+.++|+.+|=.+
T Consensus 121 ~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~ 198 (498)
T KOG0637|consen 121 YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYAL 198 (498)
T ss_pred hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeec
Confidence 211 00 1 11222223333 3333555666788999988777777 9999999999999887543
|
|
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.15 Score=54.63 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10046 208 MAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWF 281 (805)
Q Consensus 208 ~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~ 281 (805)
.+..+...++.+.+..++|-|+.+++++..+...... -+-+.+..++- ...+.|+|.++.+..-.++++..-
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVP-a~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVP-AGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhcc-HHHhhccccccccccCcceecHHH
Confidence 3444555666668999999999999988877665432 23355666644 468889999998887777776543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.6 Score=48.75 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHhhHHHhhHHHH--HH---HHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 284 KRGLACSLGSTGTGFGTTVYAPI--TS---YLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 284 ~rg~a~gi~~~~~~lG~~lgp~i--~~---~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+|+....+-..++.+|.++.-+. .. .-.-...|++++.+.+++.++.+++..++
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455566665543222 22 00112359999998887776666665554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.38 Score=55.00 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=91.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHh-c---------CcHHHHHHHHHHHHHH
Q psy10046 195 ASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCF-S---------RTIEHMYLTFGLLAGI 264 (805)
Q Consensus 195 ~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~-a---------~~~~~l~i~~R~l~G~ 264 (805)
.++...+.+..+..++..+|..++..+.-+..-|+++.++.++.++..+.... . ++. ++.++--++..+
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~~ 330 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTILEEV 330 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHHHHHH
Confidence 78888888888888999999999988888888888888888777766554221 1 122 222333466666
Q ss_pred HHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc
Q psy10046 265 GLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYG 315 (805)
Q Consensus 265 g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g 315 (805)
..+..+-+...++++..| ..-|...+++....++|..++..++..+.+.+|
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 666666777777888888 458999999999999999999999999887655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.2 Score=50.01 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHH--HHH---HHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Q psy10046 197 KSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIIS--GVG---FVLSCFSRTIEHMYLTFGLLAGIGLALSYV 271 (805)
Q Consensus 197 ~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~--~i~---~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~ 271 (805)
..+.-+...+|.+|-.++.--.. .+--|++.+.+.+-. .+. ....-+.++.|.+++ .-+..|+.+|..++
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~----~~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~-lif~eGLlGGa~YV 354 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLP----FFRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFV-LIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhccee----eeehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHhhhHHHH
Confidence 45666777777776555543221 122244433333222 222 222335678887755 45899999999999
Q ss_pred HHHHHHhhhc-ccchhHHHHHHHHHhhHHHhhHHHHHHHHh
Q psy10046 272 TAVVSIAFWF-EKKRGLACSLGSTGTGFGTTVYAPITSYLI 311 (805)
Q Consensus 272 ~~~~~l~~~~-p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~ 311 (805)
.....+.+-. +++|..++|+...+-.+|.+++.+++-++-
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9998888444 588999999999999999999888876553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.012 Score=68.88 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=2.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhh
Q psy10046 664 SISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMP 743 (805)
Q Consensus 664 ~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~ 743 (805)
++..+++.+........++++-+.++++..++|++.+.+-++.++..++..++..| ..|.+++.++.++.+++.+++.
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~--~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR--GHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCcceeeecHHHHHHHHHHHh
Confidence 33444444444444555666666789999999999999999999999999999999 7788888888888888877653
Q ss_pred hh--hh-----------------------------------------------hHHHHHHHHHHHhhhhhhhchhhhhhh
Q psy10046 744 LF--AT-----------------------------------------------NYWALLFTCLSFGIFFASNFSCTPIIL 774 (805)
Q Consensus 744 ~~--~~-----------------------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~ 774 (805)
+. .. .++.+++..++.|+|....+++..+++
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 20 00 012355667788999999999999999
Q ss_pred hhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 775 VELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 775 ~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
-|.++++..+...|+.+++..+|-++|=.
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~ 195 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFL 195 (539)
T ss_dssp -----------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHH
Confidence 99999999998889988887777766643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.017 Score=62.85 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhh------------hhhHHHHHHHHHHHhhhhh
Q psy10046 697 SILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLF------------ATNYWALLFTCLSFGIFFA 764 (805)
Q Consensus 697 ~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~------------~~~~~~~~~~~~l~G~~~g 764 (805)
.++..++++..+||.+.+|..-+ ..++|+++. ..+.=.+..-++.++ ..+.+..++.++++|+.-|
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~-~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWP-GPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEec-ccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc
Confidence 35668899999999998885422 113444333 222211111111111 1244556777889999988
Q ss_pred hhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCCC
Q psy10046 765 SNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPLA 805 (805)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ia 805 (805)
-..++...+.++.++++++..+-.+..++-.+|-.+|..++
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ---HHHH----------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999888888888887778788887776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.02 E-value=6 Score=43.01 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=70.8
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHH
Q psy10046 158 GGWGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGI 236 (805)
Q Consensus 158 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~ 236 (805)
.+|+|.++++.+++.++...+-.+... +... +|-...+.+++.+.|.+.+++|+.+.-++.|.--.-+.+.+=.+
T Consensus 6 ~~~~alL~laVf~~aa~GlvyElal~t----LatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vEll 81 (508)
T COG4262 6 NRWRALLLLAVFVCAACGLVYELALGT----LATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELL 81 (508)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHH
Confidence 347788877777777665444444433 3343 35567789999999999999999998888774322211111111
Q ss_pred HHHHH-----HHHHHhc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10046 237 ISGVG-----FVLSCFS----RTIEHMYLTFGLLAGIGLALSYVTAVVSIAF 279 (805)
Q Consensus 237 l~~i~-----~i~~a~a----~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~ 279 (805)
+..++ .+-..|+ ++-+.+++ .-++.|.-.|.-.|..+.++.+
T Consensus 82 lgligg~Sa~~ly~~FA~~~~~~~~Vly~-lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 82 LGLIGGVSAAALYLLFALESAPSRLVLYA-LTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHhccchHHHHHHHHHhccchHHHHHHH-HHHHHHHHHhcchHHHHHHHHH
Confidence 11111 1111233 23444444 4677888888888888888775
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.72 E-value=29 Score=39.80 Aligned_cols=124 Identities=10% Similarity=-0.003 Sum_probs=83.5
Q ss_pred HHHHHhCC---ChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc---------Cc----
Q psy10046 188 EFLNEFGA---SKSKTAWIGSLFMA-VPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS---------RT---- 250 (805)
Q Consensus 188 ~i~~~~g~---s~~~~~l~~s~~~l-g~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a---------~~---- 250 (805)
.+.+.+.+ .+..+.++-+.+.+ +..+..++.+++++++-+.+++.+.+..+....+++++. ++
T Consensus 48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~ 127 (509)
T COG3202 48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFS 127 (509)
T ss_pred HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHH
Confidence 44555543 45667888888888 778888999999999999999888888887777777653 11
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHH
Q psy10046 251 -------------------IEHMYLTFGLLAGIGLALSYVTA-VVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSY 309 (805)
Q Consensus 251 -------------------~~~l~i~~R~l~G~g~g~~~~~~-~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~ 309 (805)
.|..-+ +-++.=+-.+...... .....+... ++-.+..+++..+.+++..++..+..+
T Consensus 128 ~~~~~~~p~~l~~~ili~~~Ws~s~-~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 128 RDLFADLPMFLKWFILIVGEWSYSL-FYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW 206 (509)
T ss_pred HHHHhhCCccceeeeEeecchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 022211 1122223233333322 223335565 677889999999999999999888888
Q ss_pred Hhh
Q psy10046 310 LIS 312 (805)
Q Consensus 310 l~~ 312 (805)
+..
T Consensus 207 ~~k 209 (509)
T COG3202 207 LSK 209 (509)
T ss_pred Hhh
Confidence 876
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.1 Score=47.82 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10046 201 AWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFW 280 (805)
Q Consensus 201 ~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~ 280 (805)
+.+.-.-.+...+..+.+..+.||+.-..=..+..++.+.+.++.+++++.++-+++ -++..++.|..-..-.++-+.+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~G-V~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLG-VVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhh-hhhhhhcCCcceeehhhhhccC
Confidence 334444445555556666677787543333344455667777888999988877564 4566666654433322222222
Q ss_pred cccchhHHHHHHHHHhhHHHhhHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 281 FEKKRGLACSLGSTGTGFGTTVYAPITSYLISE--YGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 281 ~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~--~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
....++.|..+.+.++.+|..-..++.+. ..-|.+.++...+.++.++..++.
T Consensus 144 ----~~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 144 ----PSIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred ----CCceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 23345667777777777877766666653 456778887777666666555554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.58 Score=52.48 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=86.4
Q ss_pred hhhhhhhhHHHHHHh--cCCChhhHHHHHHHHH-HHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhH
Q psy10046 673 WFVIPYFYLTDFVTN--QGLSKEEATSILSYIG-VTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNY 749 (805)
Q Consensus 673 ~~~~~~~~lp~~~~~--~G~s~~~a~~~~~~~~-i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~ 749 (805)
-+-..--|+..|+.+ +|++..+..--+.+.+ -..++.-+...++.|. .+-|.++++..+...+..+++. ..++.
T Consensus 18 ~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~--l~Ykpviil~~~~~i~t~~lll-~~~sv 94 (412)
T PF01770_consen 18 EFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY--LRYKPVIILQALSYIITWLLLL-FGTSV 94 (412)
T ss_pred hcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHH-HHCcH
Confidence 334445577778765 7999888765433333 3444555677788999 7777777776666555554444 57888
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 750 WALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 750 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
..+-+.-+++|++.++ -...+.++-..+++++.-.+.+......-+|.++|..
T Consensus 95 ~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 95 LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999987766 3344566666778888888887777777666655543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=90.33 E-value=12 Score=42.63 Aligned_cols=125 Identities=18% Similarity=0.108 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHH---hcCc----HH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSC---FSRT----IE 252 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a---~a~~----~~ 252 (805)
.+++..+..+...-|++...+|..-++..+....+..++.++.+|+|..+.-+++...-.+...++. +.+. ..
T Consensus 275 Lsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~ 354 (432)
T PF06963_consen 275 LSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSI 354 (432)
T ss_pred hcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Confidence 3444454555666699999999999999999999999999999999988776666554333322222 2222 22
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHH
Q psy10046 253 HMYLTFGLLAGIGL-----ALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPIT 307 (805)
Q Consensus 253 ~l~i~~R~l~G~g~-----g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~ 307 (805)
.. .-++.|+.. =+...+..-++.+..| ++||...|.-.....+--.+--.++
T Consensus 355 s~---~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 355 SA---YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred HH---HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 123444433 3344555566667777 7799999988877776665544433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=1.9 Score=50.43 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=61.1
Q ss_pred cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHH-HHHHHH-HHHHhhhhhh-h---hhHHHHHHHHHHHhh
Q psy10046 688 QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYA-ACLIGC-GVSTALMPLF-A---TNYWALLFTCLSFGI 761 (805)
Q Consensus 688 ~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~-~~~~~~-~i~~l~~~~~-~---~~~~~~~~~~~l~G~ 761 (805)
.|.+....+.+++.+-++..+|+.+++++.++ ..++.... +...+. +++..++... . .....++..+++.++
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~--~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 122 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD--AAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL 122 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888888888888888877644 22222111 111111 1111111100 0 111223444556677
Q ss_pred hhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCC
Q psy10046 762 FFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPP 803 (805)
Q Consensus 762 ~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~ 803 (805)
..|+.+|+..-+..+.. .+..+...|-.+.+..+|+++|..
T Consensus 123 l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l 163 (521)
T PRK03612 123 LIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGL 163 (521)
T ss_pred HHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHH
Confidence 88888777666555432 223455566666666666666643
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=88.13 E-value=4.2 Score=42.65 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHH----HHHHHHHHHHHHHHh-cC----cHHHHHHHHHHHHHHHHHHH
Q psy10046 200 TAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTI----VAGIISGVGFVLSCF-SR----TIEHMYLTFGLLAGIGLALS 269 (805)
Q Consensus 200 ~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vli----i~~~l~~i~~i~~a~-a~----~~~~l~i~~R~l~G~g~g~~ 269 (805)
.....-++..|+.+|+...|++... +-||+.+. .+++++.+..++.+. .. ++..+++ +.|+.|++.=+.
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I-~~Fl~G~f~Wgi 221 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYI-FGFLAGFFLWGI 221 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH-HHHHHHHHHHhh
Confidence 3556667778888888989998874 56666544 334444444444212 22 2344444 466766655333
Q ss_pred HHHHHHHHhhhc---ccchhHHHHHHHH
Q psy10046 270 YVTAVVSIAFWF---EKKRGLACSLGST 294 (805)
Q Consensus 270 ~~~~~~~l~~~~---p~~rg~a~gi~~~ 294 (805)
.++....-.|+- |++-|...|+...
T Consensus 222 Q~ViL~lPhEyK~~~pk~ig~~Fg~iWG 249 (267)
T PF07672_consen 222 QGVILNLPHEYKGYNPKKIGIQFGLIWG 249 (267)
T ss_pred hHHHhcChhhhcCCCcceehhHHHHHHH
Confidence 333322222432 3445555554443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=87.09 E-value=65 Score=37.26 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHH
Q psy10046 260 LLAGIGLALSYVTAVVSIAFWFE--KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFN 329 (805)
Q Consensus 260 ~l~G~g~g~~~~~~~~~l~~~~p--~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~ 329 (805)
++.|+.........-..+.+.+| .+|...+|-+....++..++..++++.+....||.....+.-++.++
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555555666666666676766 56899999998888888877777789999999999988877665555
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 5/135 (3%)
Query: 189 FLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS 248
+L E G S+ + S + + ++ R I++ + F
Sbjct: 53 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 112
Query: 249 RTIEHMYLTFGLL---AGIGLALSYVTAVVSIAFWF-EKKRGLACSLGSTGTGFGTTVYA 304
+L G + + ++ W+ +K+RG S+ + G +
Sbjct: 113 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 172
Query: 305 PITSYLISE-YGWRG 318
+ ++ W
Sbjct: 173 LLFLLGMAWFNDWHA 187
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 13/149 (8%)
Query: 668 ILLFTWFVIPYFYLT--------DFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
I L +F +YL ++ QG S+ + LS I + +G D+
Sbjct: 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR 88
Query: 720 PWLNVKKTYAACLIGCGVSTALM---PLFATNYWALLFTCLSFGIFFASNFSCTPIILVE 776
N + A LI M P ++ + G F + +V
Sbjct: 89 --SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146
Query: 777 LVPLDRFATAYGLTLLAQGIGNLVGPPLA 805
+ A +G + P L
Sbjct: 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 15/152 (9%)
Query: 660 FLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQ 719
+ V + + W YL + + ++++ G + GW D
Sbjct: 261 NVFVYLLRYGILDWSP---TYL---KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD- 313
Query: 720 PWL---NVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPI--IL 774
+ N T + ++T + + + C+ F I
Sbjct: 314 -KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI-YGPVMLIGLHA 371
Query: 775 VELVPLDRFATAYGLTLLAQGI-GNLVGPPLA 805
+EL P TA G T L + G++ +
Sbjct: 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 37/220 (16%)
Query: 140 EDEEEGNTREEEDSKIPDGGWG--------WMVVLAAFFINMAGDGIAFSFGLLY---IE 188
+ ++ N + E++ W + +A F+ + +G+L
Sbjct: 225 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL------RYGILDWSPTY 278
Query: 189 FLNEFGASKSKTAWIGSLF---MAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLS 245
+ K++W L+ LL S V + R T V + +
Sbjct: 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIATIV 337
Query: 246 CFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFW------FEKKR-GLACSLGSTGTGF 298
+ + + + IG + + KK G A
Sbjct: 338 YWMNPAGNPTVDMICMIVIGFLI----YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393
Query: 299 GTTVYAPI-TSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337
G +V A Y + +GW G +++ G + I+
Sbjct: 394 GGSVAASAIVGYTVDFFGWDGGFMVMIG----GSILAVIL 429
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 5e-09
Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 7/180 (3%)
Query: 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSL--FMAVPLLLGPVAS 219
W + L ++ D F + F ++ ++ + ++ A
Sbjct: 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF--FAP 280
Query: 220 AFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAF 279
+ + G ++ ++AG I V + S F+ + + + L + V I
Sbjct: 281 LIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILK-TLHMFEVPFLLVGCFKYITS 339
Query: 280 WFEKK-RGLACSLGS-TGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337
FE + + + + + G++G L+L +
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 24/205 (11%), Positives = 61/205 (29%), Gaps = 18/205 (8%)
Query: 613 FYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLEL----HFLLVSISTI 668
+ +G +I++ +L +++ + +A F + LEL +S+ I
Sbjct: 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVI 230
Query: 669 LLFTWFVIP----YFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNV 724
+ + + + T F ++ +G ++ P +
Sbjct: 231 GVSCTYDVFDQQFANFFTSFFATGEQGTR-VFGYVTTMGELLNASIMFF-----APLIIN 284
Query: 725 KKTYAACLIGCGVSTAL---MPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLD 781
+ L+ G ++ FAT+ ++ + +
Sbjct: 285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344
Query: 782 RFATAYGL-TLLAQGIGNLVGPPLA 805
AT Y + + + + LA
Sbjct: 345 FSATIYLVCFCFFKQLAMIFMSVLA 369
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 57/474 (12%), Positives = 120/474 (25%), Gaps = 199/474 (41%)
Query: 349 KEKDLKSIKGASSCGSVSYR---TESDMPDIEVLKEMLESGVTPD--FIETSVATELNAE 403
++++ I + S + R T + E++++ +E + + F+ + + TE
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 404 TCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQ 463
+ + YI ++ ++ + F KY N + + L +L+
Sbjct: 106 S------MMTRMYIEQRDR--LYNDNQVF-----AKY---NVSRLQPYLKLRQ-ALLELR 148
Query: 464 --------------KT-LSAEADRASEPRGKPLVKNHSVESDGPHEPL-VSAGKGNDSNR 507
KT ++ + ++ V+ + ++ N
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDV-----------CLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 508 CKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDF 567
+ L Q + T + K H ++ +
Sbjct: 198 V--LEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQA-----------------ELRRL 237
Query: 568 LHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILI 627
L SK LL +L +V +
Sbjct: 238 LKSKPYEN-----CLL-----VLL------------NV---QN----------------- 255
Query: 628 AVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN 687
+ F+ S ILL T F +TDF++
Sbjct: 256 ---------AK-------AWNAFNLS------------CKILLTTRFK----QVTDFLSA 283
Query: 688 Q------------GLSKEEATSILS-YIGVTNT-------------VGMVALG------- 714
L+ +E S+L Y+ + ++A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 715 WACDQPWLNV-----KKTYAACLIGCGVSTALMP-LFATNYWALLFTCLSFGIF 762
W W +V + L L P + + L +F
Sbjct: 344 W---DNWKHVNCDKLTTIIESSL------NVLEPAEYRKMFDRL-------SVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 60/395 (15%), Positives = 108/395 (27%), Gaps = 124/395 (31%)
Query: 217 VASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT---IEHMYLTFGLLAGIGLALSYVTA 273
+AF C+ ++ V LS + T ++H +T L L Y+
Sbjct: 258 AWNAF--NLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD- 312
Query: 274 VVSIAFWFEKKRGL---ACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330
+ + L + P LS
Sbjct: 313 --------CRPQDLPREVLTT------------NP---------------RRLS------ 331
Query: 331 CVCGAIMRD-PEWWT--LEQNKEKDLKSIKGASSCGSVSYRTESDM----------PD-- 375
+ +RD W N +K I+ S++ ++ P
Sbjct: 332 -IIAESIRDGLATWDNWKHVNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 376 ---IEVLKEMLESGVTPDFIETSVATELNAETC----KFSSVINIPT-YIR----NNEKQ 423
+L ++ V + V +L+ + S I+IP+ Y+ +
Sbjct: 386 HIPTILL-SLIWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 424 DVHKS------------SDPFTTPENPKY-----------PEPNRTAAE-----LEDSFT 455
+H+S SD P +Y E L+ F
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 456 APKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPG 515
K+R +A + + K + ++D +E LV+A
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF------LPKIEE 557
Query: 516 NLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHR 550
NL S T LR +++ H +V R
Sbjct: 558 NL---ICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 22/160 (13%)
Query: 163 MVVLAAFFINMAGDGIAFSFGLLYI---EFLNEFGASKSKTAWIGSLFMAVPLLLGPVAS 219
++ + FF+ A + L I +F F + + I S F ++ A
Sbjct: 29 ALLCSLFFL------WAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAG 82
Query: 220 AFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH--MYLTFGLLAGIGLAL------SYV 271
++K ++ I + +G L + I + ++L + GL +V
Sbjct: 83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFV 142
Query: 272 TAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLI 311
T + E +L T FG + LI
Sbjct: 143 TVLGP-----ESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.88 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.29 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.23 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.11 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.86 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.85 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.82 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=298.66 Aligned_cols=366 Identities=13% Similarity=0.173 Sum_probs=286.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
++|..+...++..+........+++++|.+.+++ .+..+++++.+++.+++.++.+++|+++||+|||++++++.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3466666666666655555566788889999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhcc
Q psy10046 240 VGFVLSCF----SRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEY 314 (805)
Q Consensus 240 i~~i~~a~----a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~ 314 (805)
++.+++++ +++++.+++ +|++.|++.+...+...+++.+++| ++|+++++++..+..+|.+++|++++++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFV-LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHH-HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhccccHHHHHH-HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 999999966 6999999999999999999999998 78999999999999999999999999999989
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchh
Q psy10046 315 G-WRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIE 393 (805)
Q Consensus 315 g-Wr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (805)
| ||+.|++.+++.++..++.++..++.....+..
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 217 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP--------------------------------------------- 217 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC---------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC---------------------------------------------
Confidence 8 999999998887776665544432210000000
Q ss_pred hhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccC
Q psy10046 394 TSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRA 473 (805)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (805)
+.++... .... + ..+
T Consensus 218 ------------------------~~~~~~~--------------~~~~---------~-~~~----------------- 232 (451)
T 1pw4_A 218 ------------------------PIEEYKN--------------DYPD---------D-YNE----------------- 232 (451)
T ss_dssp ------------------------SCTTTCC--------------C----------------------------------
T ss_pred ------------------------Chhhhcc--------------cccc---------c-chh-----------------
Confidence 0000000 0000 0 000
Q ss_pred CCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccch
Q psy10046 474 SEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLW 553 (805)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (805)
+ +.+.
T Consensus 233 ----------~----------------------------------------------------~~~~------------- 237 (451)
T 1pw4_A 233 ----------K----------------------------------------------------AEQE------------- 237 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------h----------------------------------------------------hhcc-------------
Confidence 0 0000
Q ss_pred hhhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccc
Q psy10046 554 VQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFT 633 (805)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (805)
T Consensus 238 -------------------------------------------------------------------------------- 237 (451)
T 1pw4_A 238 -------------------------------------------------------------------------------- 237 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhhe
Q psy10046 634 ENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVA 712 (805)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~ 712 (805)
.. .++.....+++++.++.+++..++....+.....++|.|+++ .|++..+++++.++.+++.++++++
T Consensus 238 --~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (451)
T 1pw4_A 238 --LT--------AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 307 (451)
T ss_dssp ---C--------CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cc--------cccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000111256788899999888888888888889999999988 7999999999999999999999999
Q ss_pred eeeecCCCCc--cchhHHHHHHHHHH-HHHhhhhhhh-hhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhH
Q psy10046 713 LGWACDQPWL--NVKKTYAACLIGCG-VSTALMPLFA-TNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYG 788 (805)
Q Consensus 713 ~g~l~dr~~~--gr~~~~~~~~~~~~-i~~l~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~g 788 (805)
.|++.|| + ++|+.+.++.++.+ ++++++.... .+.+.+.+..++.|++.+...+....++.+.+|++.+++++|
T Consensus 308 ~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 308 CGWMSDK--VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHH--TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHH--HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 9999999 8 88888777766655 5555544322 356667777888898888888888899999999999999999
Q ss_pred HHHHHHhh-hhccCCCC
Q psy10046 789 LTLLAQGI-GNLVGPPL 804 (805)
Q Consensus 789 l~~~~~~i-g~~igp~i 804 (805)
+.+++..+ |++++|.+
T Consensus 386 ~~~~~~~~~g~~~~~~~ 402 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAI 402 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 99888754
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=283.53 Aligned_cols=344 Identities=13% Similarity=0.084 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHH
Q psy10046 162 WMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVG 241 (805)
Q Consensus 162 w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~ 241 (805)
|..++..++..++.......+++++|.+.+++|++..+++++.+++.++++++.+++|+++||+|||++++++.++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33344444444433333456778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHh-hccc-
Q psy10046 242 FVLS---CFSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLI-SEYG- 315 (805)
Q Consensus 242 ~i~~---a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~-~~~g- 315 (805)
.+++ +++++++.+++ .|++.|++.+...+...+++.+++| ++|++++++...+..+|.+++|++++++. ...+
T Consensus 105 ~~~~~~~~~~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLV-GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHhccccccHHHHHH-HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999 88999999966 6999999999999999999999998 77999999999999999999999999998 5554
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCC
Q psy10046 316 ------------------------WRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTES 371 (805)
Q Consensus 316 ------------------------Wr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 371 (805)
||+.|++.+++.++..++.++...|+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------------------------- 236 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS--------------------------- 236 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT---------------------------
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc---------------------------
Confidence 99999988877766666655543331000
Q ss_pred CCCCHHHHHHHHhcCCCccchhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccc
Q psy10046 372 DMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELE 451 (805)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (805)
++. +
T Consensus 237 -------------------------------------------------~~~------------------~--------- 240 (438)
T 3o7q_A 237 -------------------------------------------------DNH------------------S--------- 240 (438)
T ss_dssp -------------------------------------------------TCC------------------C---------
T ss_pred -------------------------------------------------ccc------------------c---------
Confidence 000 0
Q ss_pred cCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCccccc
Q psy10046 452 DSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRR 531 (805)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (805)
.++
T Consensus 241 --~~~--------------------------------------------------------------------------- 243 (438)
T 3o7q_A 241 --DAK--------------------------------------------------------------------------- 243 (438)
T ss_dssp --CSS---------------------------------------------------------------------------
T ss_pred --ccc---------------------------------------------------------------------------
Confidence 000
Q ss_pred ccccccCCccccccccccccchhhhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccc
Q psy10046 532 QFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDY 611 (805)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (805)
.
T Consensus 244 -------~------------------------------------------------------------------------ 244 (438)
T 3o7q_A 244 -------Q------------------------------------------------------------------------ 244 (438)
T ss_dssp -------T------------------------------------------------------------------------
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccchhheeccccccccccccCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhc-C
Q psy10046 612 SFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDF-VTNQ-G 689 (805)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~-~~~~-G 689 (805)
.+..+.. .++++++.++..++..++..........++|.| +++. |
T Consensus 245 ----------------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 291 (438)
T 3o7q_A 245 ----------------------------GSFSASL-----SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPG 291 (438)
T ss_dssp ----------------------------TSHHHHH-----HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ----------------------------cchhhhH-----HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 0000000 145678888888888888888888888999999 8875 9
Q ss_pred CChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchh
Q psy10046 690 LSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSC 769 (805)
Q Consensus 690 ~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~ 769 (805)
++..+++++.++..++.++++++.|++.|| +++|+++.++.++.+++++++. ..++.+. .+..++.|++.+..++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~ 367 (438)
T 3o7q_A 292 MTAGFAANYLTGTMVCFFIGRFTGTWLISR--FAPHKVLAAYALIAMALCLISA-FAGGHVG-LIALTLCSAFMSIQYPT 367 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHH-HCCHHHH-HHHHHHHHHHHTTHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHH-HcCCcHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999988888888777666 3444443 44457788888999999
Q ss_pred hhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 770 TPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 770 ~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
...+..+.+|++ ++.+.++.. +..+|++++|++
T Consensus 368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence 999989999866 888888877 667888887754
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=264.54 Aligned_cols=333 Identities=14% Similarity=0.043 Sum_probs=264.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCc
Q psy10046 171 INMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRT 250 (805)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~ 250 (805)
..++.......+.+.+|.+.+++|.+..+.+++.+++.+++.++.+++|+++||+|||++++++.++.+++.++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 87 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS 87 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc
Confidence 33333344456677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHH
Q psy10046 251 IEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFN 329 (805)
Q Consensus 251 ~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~ 329 (805)
++.+++ .|++.|++.+...+...+++.+++| ++|++++++...+..+|.+++|++++++.+..|||+.|++.+++.++
T Consensus 88 ~~~l~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 88 LTVLIA-ASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999866 6999999999999999999999987 78999999999999999999999999999989999999988877666
Q ss_pred HHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchhhhhhcccccccccccc
Q psy10046 330 LCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIETSVATELNAETCKFSS 409 (805)
Q Consensus 330 ~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (805)
..++.++..|+... . +
T Consensus 167 ~~~~~~~~~~~~~~-----~----~------------------------------------------------------- 182 (375)
T 2gfp_A 167 VTFSMARWMPETRP-----V----D------------------------------------------------------- 182 (375)
T ss_dssp HHCCCCCSSCCCST-----T----T-------------------------------------------------------
T ss_pred HHHHHHHHCcccCC-----C----C-------------------------------------------------------
Confidence 55543333221000 0 0
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccCCCCCCCcccccCCCCC
Q psy10046 410 VINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRASEPRGKPLVKNHSVES 489 (805)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (805)
+++ + +
T Consensus 183 ----------~~~-------------------~-------------~--------------------------------- 187 (375)
T 2gfp_A 183 ----------APR-------------------T-------------R--------------------------------- 187 (375)
T ss_dssp ----------CCC-------------------C-------------C---------------------------------
T ss_pred ----------ccc-------------------c-------------c---------------------------------
Confidence 000 0 0
Q ss_pred CCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccchhhhhhcCCCccccccc
Q psy10046 490 DGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLWVQILVNGGHRFQDFLH 569 (805)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (805)
. +..
T Consensus 188 -------------------------------------------------~----------~~~----------------- 191 (375)
T 2gfp_A 188 -------------------------------------------------L----------LTS----------------- 191 (375)
T ss_dssp -------------------------------------------------T----------TTC-----------------
T ss_pred -------------------------------------------------H----------HHH-----------------
Confidence 0 000
Q ss_pred cccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccccCccchhhHHHHHhhh
Q psy10046 570 SKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGM 649 (805)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (805)
T Consensus 192 -------------------------------------------------------------------------------- 191 (375)
T 2gfp_A 192 -------------------------------------------------------------------------------- 191 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHH
Q psy10046 650 FDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTY 728 (805)
Q Consensus 650 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~ 728 (805)
..+++|+|.++..++..++..........++|.|+++ .|+++.+++++....+++.++++++.+++.|| ++++.
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r--~~~~~-- 266 (375)
T 2gfp_A 192 -YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR--FSTLM-- 266 (375)
T ss_dssp -STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH--HHHHH--
T ss_pred -HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--
Confidence 0145678888888888888888888888889998887 79999999999999999999999999999999 77622
Q ss_pred HHHHHH-HHHHHh--hhhhh-hhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 729 AACLIG-CGVSTA--LMPLF-ATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 729 ~~~~~~-~~i~~l--~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
..+... ..++++ .+... ..+.+.+++..++.|++.+...+....++.+.+| ++++++.|+.+.+..+|.+++|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 267 WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 222222 222222 11111 2355666677888899999999999999999998 899999999999999999999986
Q ss_pred C
Q psy10046 805 A 805 (805)
Q Consensus 805 a 805 (805)
+
T Consensus 346 ~ 346 (375)
T 2gfp_A 346 S 346 (375)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=264.95 Aligned_cols=197 Identities=15% Similarity=0.166 Sum_probs=155.7
Q ss_pred hhHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIA-FSFGLLYIEFLNEFGA--------SKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSM 230 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~-~~~~~~~p~i~~~~g~--------s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~v 230 (805)
+.|.+.+++.+..+ .+|++ ..++..+|.+.++|+. +....+++.+++.+|+++|++++|+++||+|||++
T Consensus 9 y~~~i~~~a~lg~~-~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 9 YIFSITLVATLGGL-LFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 33555444444333 44554 3355667888888743 34567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHH
Q psy10046 231 TIVAGIISGVGFVLSC------------------FSRTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSL 291 (805)
Q Consensus 231 lii~~~l~~i~~i~~a------------------~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi 291 (805)
++++.+++.++.++++ +++|++++++ +|+++|+|.|+..+....+++|+.| ++|++..++
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~-~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI-YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 9999999999999998 4789999966 6999999999999999999999998 779999999
Q ss_pred HHHHhhHHHhhHHHHHHHHhhc--------cchHHHHHHHHHHHHHHHHHHHh-ccCCchhhhhhchHHHHHhhhc
Q psy10046 292 GSTGTGFGTTVYAPITSYLISE--------YGWRGTVLLLSGTFFNLCVCGAI-MRDPEWWTLEQNKEKDLKSIKG 358 (805)
Q Consensus 292 ~~~~~~lG~~lgp~i~~~l~~~--------~gWr~~f~i~~~~~~~~~i~~~~-~~~p~~~~~~~~~~~~~~~l~~ 358 (805)
...+..+|.++++.++..+... .+||+.+.+.++..++.++..++ .++|+|+..+++.+++.+.+++
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~ 242 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK 242 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH
Confidence 9999999999999888877643 34777776666655555444433 4678888888888888776654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=257.00 Aligned_cols=153 Identities=13% Similarity=0.171 Sum_probs=136.6
Q ss_pred HHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q psy10046 183 GLLYIEFLNE-----FGASKSKTAWIGSLFMAVPLLLGPVASAFVEK-FGCRSMTIVAGIISGVGFVLSCFSRTIEHMYL 256 (805)
Q Consensus 183 ~~~~p~i~~~-----~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr-~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i 256 (805)
..+.+++.+. +|++..+++++.+++.+++.++.+++|+++|| +|||++++++.++++++.++++++++++.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344555566 99999999999999999999999999999999 89999999999999999999999999999866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cc--hhHHHHHHHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy10046 257 TFGLLAGIGLALSYVTAVVSIAFWFE-KK--RGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 257 ~~R~l~G~g~g~~~~~~~~~l~~~~p-~~--rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~ 333 (805)
.|++.|++.+...+...+++.+++| ++ |+.+++++..+..+|.+++|++++++.+..|||+.|++.++..++.+++
T Consensus 114 -~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 114 -SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999987 56 7888998999999999999999999999999999999987766665555
Q ss_pred HHh
Q psy10046 334 GAI 336 (805)
Q Consensus 334 ~~~ 336 (805)
.++
T Consensus 193 ~~~ 195 (491)
T 4aps_A 193 YYF 195 (491)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=225.91 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHHHHHhcC-cHHHH
Q psy10046 183 GLLYIEFLNEFG------ASKSKTAWIGSLFMAVPLLLGPVASAFVEKF-GCRSMTIVAGIISGVGFVLSCFSR-TIEHM 254 (805)
Q Consensus 183 ~~~~p~i~~~~g------~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~-Grr~vlii~~~l~~i~~i~~a~a~-~~~~l 254 (805)
..+.+++.+++| ++..+++++.+++.+++.++.+++|+++||+ |||++++++.++++++.+++++++ +++.+
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGF 112 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 334455677899 9999999999999999999999999999999 999999999999999999999998 99988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHH---HHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSL---GSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNL 330 (805)
Q Consensus 255 ~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi---~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~ 330 (805)
++ .|++.|++.+...+...+++.+++| ++|+++.++ +..+..+|.+++|++++++.+..|||+.|++.+++.++.
T Consensus 113 ~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 113 YT-GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HH-HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 66 6999999999999999999999997 668776666 888999999999999999999899999999988776665
Q ss_pred HHHHHh
Q psy10046 331 CVCGAI 336 (805)
Q Consensus 331 ~i~~~~ 336 (805)
+++.++
T Consensus 192 ~~~~~~ 197 (524)
T 2xut_A 192 TVFFWL 197 (524)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-22 Score=226.02 Aligned_cols=149 Identities=11% Similarity=-0.018 Sum_probs=107.6
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhc-C---CChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHH
Q psy10046 653 SMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTNQ-G---LSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTY 728 (805)
Q Consensus 653 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-G---~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~ 728 (805)
++++++.++.+++..++....+..+..++|.|+.+. + .+....+++.++..++.+++.++.|+++|| ++||+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~l 292 (417)
T 2cfq_A 215 ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR--IGGKNAL 292 (417)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHH
T ss_pred HHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcHHHHH
Confidence 346677777666654444444444445577776552 3 223445667777778888999999999999 9999988
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHH-HHHHhhhhccCCCC
Q psy10046 729 AACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLT-LLAQGIGNLVGPPL 804 (805)
Q Consensus 729 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~-~~~~~ig~~igp~i 804 (805)
.++.++.++.++++. ...+.+.+++..++.+++.+...+....+++|.+|++.||+++|+. ++.+++|+++||.+
T Consensus 293 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 293 LLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 888877777666555 3445555666666667776666667788999999999999999994 78888999888864
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-11 Score=131.59 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CChHHHHHHHHHHH-HHHHHHHhcC--cHHH
Q psy10046 180 FSFGLLYIEFLNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKF--GCRSMTIVAGIISG-VGFVLSCFSR--TIEH 253 (805)
Q Consensus 180 ~~~~~~~p~i~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~--Grr~vlii~~~l~~-i~~i~~a~a~--~~~~ 253 (805)
..+..+.|.+.++ +|.+..+++++.+++.++..++.+++|+++||+ |||+.++++.++.. ++.++..+.+ +.+.
T Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348 (451)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 3444555666666 899999999999999999999999999999999 99999888877776 6666666653 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhH-HHhhHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q psy10046 254 MYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGF-GTTVYAPITSYLISEYGWRGTVLLLSGTFFNLC 331 (805)
Q Consensus 254 l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~l-G~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~ 331 (805)
+++ .-++.|++.+...+....++.+.+| ++||+++|+......+ |..++|.+.+++.+..||++.|++.+++.++..
T Consensus 349 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 427 (451)
T 1pw4_A 349 DMI-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 427 (451)
T ss_dssp HHH-HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 545 4578899888888888888888888 5699999999999999 999999999999999999999999888777766
Q ss_pred HHHHhc
Q psy10046 332 VCGAIM 337 (805)
Q Consensus 332 i~~~~~ 337 (805)
++.++.
T Consensus 428 ~~~~~~ 433 (451)
T 1pw4_A 428 ILLIVV 433 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=129.07 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=124.5
Q ss_pred HHHHHHHHH-HHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q psy10046 181 SFGLLYIEF-LNE-FGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTF 258 (805)
Q Consensus 181 ~~~~~~p~i-~~~-~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~ 258 (805)
......|.+ .++ +|.+..++++..+++.++..++.+++|+++||+|||+++.++.++.+++.++..+.++.+.++. +
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 354 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-L 354 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-H
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-H
Confidence 333444555 555 5999999999999999999999999999999999999999999999999999888888876633 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHhhHHHhhHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHH
Q psy10046 259 GLLAGIGLALSYVTAVVSIAFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYG-WRGTVLLLSGTFFNLCVC 333 (805)
Q Consensus 259 R~l~G~g~g~~~~~~~~~l~~~~p~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~~g-Wr~~f~i~~~~~~~~~i~ 333 (805)
++.|++.+...+...+++.+.+|++++.+.++.. ...+|.+++|++.|++.+..| +++.|++.++..++.++.
T Consensus 355 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 355 -TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 7889999988998888888888877888888877 566999999999999999999 999998766554444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.9e-10 Score=124.13 Aligned_cols=140 Identities=12% Similarity=0.153 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 197 KSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVS 276 (805)
Q Consensus 197 ~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~~~ 276 (805)
....++..++..++..++.++.|+++||+|||++++++.++.+++.++.++.++.+.+++ ..++.|++.+...+....+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVI-LKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345677888888889999999999999999999999999888888888888888777755 4677788777666777788
Q ss_pred Hhhhcc-cchhHHHHH-HHHHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 277 IAFWFE-KKRGLACSL-GSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 277 l~~~~p-~~rg~a~gi-~~~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
+.+.+| +.||.+.++ +..+..+|.+++|.++|++.+..|+...|++.+++.++..++.++.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 888888 669999998 4778889999999999999998899999998887777766665543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-08 Score=108.55 Aligned_cols=159 Identities=13% Similarity=0.030 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhc-----CcHHHH
Q psy10046 180 FSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFS-----RTIEHM 254 (805)
Q Consensus 180 ~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a-----~~~~~l 254 (805)
+....+.+.+.+..+.+.........+..+...++.++.+++.||+|||+.++.+..+.+++.+..+.. .+...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 294 NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 344455678888889888888888888889999999999999999999999999888877776655432 222222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhh------ccchHHHHHHHHHH
Q psy10046 255 YLTFGLLAGIGL-ALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLIS------EYGWRGTVLLLSGT 326 (805)
Q Consensus 255 ~i~~R~l~G~g~-g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~------~~gWr~~f~i~~~~ 326 (805)
+. -++...+. .+..+....+.+|.+| +.|+.++|+......+|.++++.+...+.+ ..++.+.|++.+++
T Consensus 374 -~~-~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 374 -LS-MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp -HH-HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HH-HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 21 12222222 2234566678889999 669999999998888888888777655533 35677788888888
Q ss_pred HHHHHHHHHhccCC
Q psy10046 327 FFNLCVCGAIMRDP 340 (805)
Q Consensus 327 ~~~~~i~~~~~~~p 340 (805)
+++.+++.+++.|.
T Consensus 452 ~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 452 GVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHheecC
Confidence 88887777666554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-09 Score=117.06 Aligned_cols=140 Identities=11% Similarity=0.038 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhcCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhh
Q psy10046 662 LVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTAL 741 (805)
Q Consensus 662 ~~~i~~~~~~~~~~~~~~~lp~~~~~~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~ 741 (805)
.+++..++...........+|.+.++.|.+..+.+++.+...++..++.++.|+++|| +|||+.+.++.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR--VGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT--SCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHH
Confidence 3445555666666666677888888899999999999999999999999999999999 99999999999998888887
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHHHHHHHhhhhccCCCC
Q psy10046 742 MPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 742 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl~~~~~~ig~~igp~i 804 (805)
+. ..++++.+++..++.|++.+...+....++.|.+|+++|+.++|+.+....+|.++||.+
T Consensus 82 ~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (375)
T 2gfp_A 82 AV-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143 (375)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 77 467788888889999999999999999999999999999999999999999999988764
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-09 Score=120.81 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cC------CChhhHHHHHHHHHHHHHhhhheeeeecCCCCc-cchhHHH
Q psy10046 658 LHFLLVSISTILLFTWFVIPYFYLTDFVTN-QG------LSKEEATSILSYIGVTNTVGMVALGWACDQPWL-NVKKTYA 729 (805)
Q Consensus 658 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G------~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~-gr~~~~~ 729 (805)
+.++.+++..++...+++....+++.|+.+ .| ++..+++++.+.+.++.+++.+++|+++|| + |||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr--~~g~r~~~~ 89 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR--FFGKYNTIL 89 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT--SSCSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHH
Confidence 445666677777777777778888888765 78 999999999999999999999999999999 8 9999999
Q ss_pred HHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhHH---HHHHHhhhhccCCCCC
Q psy10046 730 ACLIGCGVSTALMPLFAT-NYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYGL---TLLAQGIGNLVGPPLA 805 (805)
Q Consensus 730 ~~~~~~~i~~l~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~gl---~~~~~~ig~~igp~ia 805 (805)
++.++.+++.+++. ... +.+.+++..++.|++.+...+....++.+.+|+++|+.+.++ .++...+|.++||.++
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 90 WLSLIYCVGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888887776 455 778888888999999999999999999999999999766555 8888999998888763
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-09 Score=119.96 Aligned_cols=144 Identities=9% Similarity=0.031 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHh------cCCChhhHHHHHHHHHHHHHhhhheeeeecCCCCc-cchhHHHH
Q psy10046 658 LHFLLVSISTILLFTWFVIPYFYLTDFVTN------QGLSKEEATSILSYIGVTNTVGMVALGWACDQPWL-NVKKTYAA 730 (805)
Q Consensus 658 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~------~G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~-gr~~~~~~ 730 (805)
+.++.+++..++...+++....+++.|+++ .|++..+++++.+...++..++.+++|+++|| + |||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~~g~r~~~~~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR--IIGARPAVFW 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccchHHHHH
Confidence 356666667777777777777888888875 79999999999999999999999999999999 5 99999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccc--hhhhhHHHHHHHhhhhccCCCC
Q psy10046 731 CLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDR--FATAYGLTLLAQGIGNLVGPPL 804 (805)
Q Consensus 731 ~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~~~a~gl~~~~~~ig~~igp~i 804 (805)
+.++.+++.+++. ..++.+.+++..++.|++.+...+....++.|.+|+++ |+.++++.++...+|.++||.+
T Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 91 GGVLIMLGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 9999988888777 46678888888899999999999999999999999888 8888998999999999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 805 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-11 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 9e-05 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 9e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-11 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 65.1 bits (157), Expect = 2e-11
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 5/188 (2%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVAS 219
W + L FF A + +F L + +L E G S+ + S +
Sbjct: 22 LRWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMG 80
Query: 220 AFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEH---MYLTFGLLAGIGLALSYVTAVVS 276
+ ++ R I++ + F + L G + + +
Sbjct: 81 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 140
Query: 277 IAFWFEK-KRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGA 335
+ W+ + +RG S+ + G + + ++ + L + L A
Sbjct: 141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200
Query: 336 IMRDPEWW 343
+
Sbjct: 201 FAMMRDTP 208
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 43.5 bits (101), Expect = 9e-05
Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 6/198 (3%)
Query: 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVAS 219
++ A + K++W L+ + +
Sbjct: 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG 306
Query: 220 AFVEKFG--CRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAVVSI 277
+K R T V + + + + + + IG + ++ +
Sbjct: 307 WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL 366
Query: 278 A---FWFEKKRGLACSLGSTGTGFGTTVYAP-ITSYLISEYGWRGTVLLLSGTFFNLCVC 333
+K G A G +V A I Y + +GW G +++ G +
Sbjct: 367 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 426
Query: 334 GAIMRDPEWWTLEQNKEK 351
++ E EQ ++
Sbjct: 427 LIVVMIGEKRRHEQLLQE 444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 43.1 bits (100), Expect = 9e-05
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 11/146 (7%)
Query: 668 ILLFTWFVIPYF------YLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWACDQPW 721
+ +F + Y ++ QG S+ + LS I + +G D
Sbjct: 28 LGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD--R 85
Query: 722 LNVKKTYAACLIGCGVSTA---LMPLFATNYWALLFTCLSFGIFFASNFSCTPIILVELV 778
N + A LI +P ++ + G F + +V
Sbjct: 86 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW 145
Query: 779 PLDRFATAYGLTLLAQGIGNLVGPPL 804
+ A +G + P L
Sbjct: 146 SQKERGGIVSVWNCAHNVGGGIPPLL 171
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 63.6 bits (153), Expect = 4e-11
Identities = 28/198 (14%), Positives = 48/198 (24%), Gaps = 8/198 (4%)
Query: 164 VVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVE 223
+ FF G F F +++ + SKS T I + LL P+ +
Sbjct: 11 MFGLFFFFYFFIMGAYFPFFPIWLH--DINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68
Query: 224 KFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALS------YVTAVVSI 277
K G R + V F + + + +G AV +
Sbjct: 69 KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128
Query: 278 AFWFEKKRGLACSLGSTGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337
++ G + A I + + L +
Sbjct: 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188
Query: 338 RDPEWWTLEQNKEKDLKS 355
D N S
Sbjct: 189 TDAPSSATVANAVGANHS 206
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 17/212 (8%), Positives = 48/212 (22%), Gaps = 3/212 (1%)
Query: 597 SHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFTENTSWMDDARELIVGMFDFSMFL 656
+ + ++ A ++ P + + A +
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217
Query: 657 ELHFLLVSISTILLFTWFVIPYFYLTDFVTNQGLSKEEATSILSYIGVTNTVGMVALGWA 716
L ++ + + + E + + T + A
Sbjct: 218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMF 277
Query: 717 CDQPWLNVKKTYAACLIGCGVSTALMPLF--ATNYWALLFTCLSFGIFFASNFSCTPIIL 774
+N A L+ + + + AT+ ++ +
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 775 VELVPLDRFATAYGLTL-LAQGIGNLVGPPLA 805
+ AT Y + + + + LA
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.85 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.09 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.2e-28 Score=274.32 Aligned_cols=365 Identities=14% Similarity=0.165 Sum_probs=267.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHH
Q psy10046 160 WGWMVVLAAFFINMAGDGIAFSFGLLYIEFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISG 239 (805)
Q Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~ 239 (805)
++|.+++.+++..+..+.....++...|.+. ++|+|.++++++.+++.++++++.+++|+++||+|||+++++++++.+
T Consensus 22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 100 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 100 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 5688887777766666555566777778665 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhHHHhhHHHHHHHHhhc-
Q psy10046 240 VGFVLSCFS----RTIEHMYLTFGLLAGIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGFGTTVYAPITSYLISE- 313 (805)
Q Consensus 240 i~~i~~a~a----~~~~~l~i~~R~l~G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~lG~~lgp~i~~~l~~~- 313 (805)
++.++++++ .+++.+++ +|++.|++.|...+....++.+++| ++|+++++++..+..+|.+++|++++.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 101 AVMLFMGFVPWATSSIAVMFV-LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHCHHHHSSSSHHHH-HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHhhccccchhhhhHHHHHH-HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 999988876 46777755 6999999999999999999999997 7799999999999999999999999887765
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCchhhhhhchHHHHHhhhccCCCCCcccccCCCCCCHHHHHHHHhcCCCccchh
Q psy10046 314 YGWRGTVLLLSGTFFNLCVCGAIMRDPEWWTLEQNKEKDLKSIKGASSCGSVSYRTESDMPDIEVLKEMLESGVTPDFIE 393 (805)
Q Consensus 314 ~gWr~~f~i~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (805)
.+||+.|++.+++.++..++.+++.+........ +
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~------------------- 214 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL--------------------------P------------------- 214 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC--------------------------C-------------------
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhccc--------------------------c-------------------
Confidence 4799999998887777666655543221000000 0
Q ss_pred hhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCCccccccccCCCchhhhhhhchhhhccccC
Q psy10046 394 TSVATELNAETCKFSSVINIPTYIRNNEKQDVHKSSDPFTTPENPKYPEPNRTAAELEDSFTAPKLRQLQKTLSAEADRA 473 (805)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (805)
..++.. .+.++ ...+
T Consensus 215 ------------------------~~~~~~--------------~~~~~----------~~~~----------------- 229 (447)
T d1pw4a_ 215 ------------------------PIEEYK--------------NDYPD----------DYNE----------------- 229 (447)
T ss_dssp ------------------------SCTTTC--------------CC----------------------------------
T ss_pred ------------------------hhhhhh--------------hhccc----------chhh-----------------
Confidence 000000 00000 0000
Q ss_pred CCCCCCcccccCCCCCCCCCCcccccCCCCCcccccCCCCCCCCCCcccCCCCcccccccccccCCccccccccccccch
Q psy10046 474 SEPRGKPLVKNHSVESDGPHEPLVSAGKGNDSNRCKSMSPPGNLGRQHRSDSTPWLRRQFSFKEQPTHYLKHLKVHRYLW 553 (805)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (805)
+ .
T Consensus 230 ----------~------------------------------------------------------~-------------- 231 (447)
T d1pw4a_ 230 ----------K------------------------------------------------------A-------------- 231 (447)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------c------------------------------------------------------c--------------
Confidence 0 0
Q ss_pred hhhhhcCCCccccccccccccccccccccccCCCcccccCccCCCccccccccccccccccccchhheeccccccccccc
Q psy10046 554 VQILVNGGHRFQDFLHSKLGVRRDTNLGLLVLPGRILDHHLRDSHSCWVFDVTQIWDYSFYLAGFWIIISGILIAVIPFT 633 (805)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (805)
+
T Consensus 232 -------------------------------------------------------------------------------~ 232 (447)
T d1pw4a_ 232 -------------------------------------------------------------------------------E 232 (447)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cCccchhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-cCCChhhHHHHHHHHHHHHHhhhhe
Q psy10046 634 ENTSWMDDARELIVGMFDFSMFLELHFLLVSISTILLFTWFVIPYFYLTDFVTN-QGLSKEEATSILSYIGVTNTVGMVA 712 (805)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~G~s~~~a~~~~~~~~i~~~ig~l~ 712 (805)
.+.. .+.......++++.++.+.+..++.....+....++|.|+.+ .|++..++++...+..++.+++.++
T Consensus 233 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (447)
T d1pw4a_ 233 QELT--------AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 304 (447)
T ss_dssp ---C--------CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc--------hhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhh
Confidence 0000 000011245678888888888888888888888899999876 7999999999999999999999999
Q ss_pred eeeecCCCCccchhHHH---HHHHHHHHHHhhhhh-hhhhHHHHHHHHHHHhhhhhhhchhhhhhhhhccCccchhhhhH
Q psy10046 713 LGWACDQPWLNVKKTYA---ACLIGCGVSTALMPL-FATNYWALLFTCLSFGIFFASNFSCTPIILVELVPLDRFATAYG 788 (805)
Q Consensus 713 ~g~l~dr~~~gr~~~~~---~~~~~~~i~~l~~~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~~~a~g 788 (805)
+|++.|| ++++.... ....+..++++++.. ...+.+..+++.++.|++.+...+....++.|.+|++.+|++.|
T Consensus 305 ~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 382 (447)
T d1pw4a_ 305 CGWMSDK--VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382 (447)
T ss_dssp HHHHHHH--TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred hhhhhhh--ccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999 65543222 222222222222221 23456667777788888888888888999999999999999999
Q ss_pred HHHHHHhhhh-ccCCC
Q psy10046 789 LTLLAQGIGN-LVGPP 803 (805)
Q Consensus 789 l~~~~~~ig~-~igp~ 803 (805)
+.+++..+++ +++|.
T Consensus 383 ~~~~~~~~~g~~~~~~ 398 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASA 398 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998887754 44553
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.2e-20 Score=204.47 Aligned_cols=113 Identities=10% Similarity=-0.070 Sum_probs=96.2
Q ss_pred CCChhhHHHHHHHHHHHHHhhhheeeeecCCCCccchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhch
Q psy10046 689 GLSKEEATSILSYIGVTNTVGMVALGWACDQPWLNVKKTYAACLIGCGVSTALMPLFATNYWALLFTCLSFGIFFASNFS 768 (805)
Q Consensus 689 G~s~~~a~~~~~~~~i~~~ig~l~~g~l~dr~~~gr~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~l~G~~~g~~~~ 768 (805)
+.+....+.......++..++..+.+++.|| .++++.+.++.++.+++++.+. ..++.+.+++..++.|++.+...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~ 331 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINR--IGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH--HCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcc--cccccchhhhHHHHHHhhhccc-cccccchhhHHHHHHHHHHHHHHH
Confidence 4455566677788888999999999999999 9999999999999888888777 566778888888999999999999
Q ss_pred hhhhhhhhccCccchhhhhHHHH-HHHhhhhccCCCC
Q psy10046 769 CTPIILVELVPLDRFATAYGLTL-LAQGIGNLVGPPL 804 (805)
Q Consensus 769 ~~~~~~~~~~~~~~~~~a~gl~~-~~~~ig~~igp~i 804 (805)
....++.+.+|++.|++++|+.. +...+|.+++|++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 368 (417)
T d1pv7a_ 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 5667888887754
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=6.7e-12 Score=134.40 Aligned_cols=145 Identities=12% Similarity=0.174 Sum_probs=125.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10046 195 ASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGVGFVLSCFSRTIEHMYLTFGLLAGIGLALSYVTAV 274 (805)
Q Consensus 195 ~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i~~i~~a~a~~~~~l~i~~R~l~G~g~g~~~~~~~ 274 (805)
.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++.++.++.+.+++ +-++.|++.+...+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVI-LKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhH-HHHHHHHHHHHHHHHHH
Confidence 34556778888889999999999999999999999999999999999999999999998866 46899999999999999
Q ss_pred HHHhhhcc-cchhHHHHHHH-HHhhHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh-ccCC
Q psy10046 275 VSIAFWFE-KKRGLACSLGS-TGTGFGTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAI-MRDP 340 (805)
Q Consensus 275 ~~l~~~~p-~~rg~a~gi~~-~~~~lG~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~-~~~p 340 (805)
+++.+.+| +.|+++.++.. .+..+|.+++|+++|++.+..||++.|++.+++.++..++.++ .+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99998887 67999999864 5677999999999999999999999999998877766665554 4444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1e-09 Score=119.54 Aligned_cols=149 Identities=10% Similarity=0.074 Sum_probs=112.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHH---HHHHHHh--cCcHHHHHHHHHHHH
Q psy10046 188 EFLNEFGASKSKTAWIGSLFMAVPLLLGPVASAFVEKFGCRSMTIVAGIISGV---GFVLSCF--SRTIEHMYLTFGLLA 262 (805)
Q Consensus 188 ~i~~~~g~s~~~~~l~~s~~~lg~~ig~l~~G~LsDr~Grr~vlii~~~l~~i---~~i~~a~--a~~~~~l~i~~R~l~ 262 (805)
++.+.++.+..+.++..+++.++..++.+++|+++||++|+.......++..+ +.++... ..+.+..++ +-++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 353 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI-CMIVI 353 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH-HHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHH-HHHHH
Confidence 44456789999999999999999999999999999999987644333332222 2222222 345555544 45778
Q ss_pred HHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHhhH-HHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Q psy10046 263 GIGLALSYVTAVVSIAFWFE-KKRGLACSLGSTGTGF-GTTVYAPITSYLISEYGWRGTVLLLSGTFFNLCVCGAIM 337 (805)
Q Consensus 263 G~g~g~~~~~~~~~l~~~~p-~~rg~a~gi~~~~~~l-G~~lgp~i~~~l~~~~gWr~~f~i~~~~~~~~~i~~~~~ 337 (805)
|++.++..+....++.+.+| +.||.++|+......+ |.+++|++.+++.+..||+..|++.++..++..++.+++
T Consensus 354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888 6699999999877666 567789999999999999999998877666665555544
|