Psyllid ID: psy10067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGEV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEccccccccEEEccccHHHHHHcccccccccccHHHHHHHHccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHccccccccccHHHcccEEEccccccccEEEccccHHHHEEEcccccEEcccccHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
maedwdadpaypsestggpvglssiaapaelpeiklfgrwscddvqvsdmSLQDYIAVKEKnakflphsagRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGEV
Flexible Loop (DISEMBL)
maedwdadpaypsestggpvGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGEV
Low Complexity Region (SEG)
MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGEV
Disordered region (IsUnstruct)
***************************PAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLT***
Disordered Region (DISOPRED)
***DW**DPAYPSESTGG**********AELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMM*****AKKLMAVRIVKHAFEIIHLLTGE*
Disordered Region (DISEMBL)
*****************GPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGEV
Disordered Region (DISPRO)
************************IAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q24186	228	40S ribosomal protein S5a	yes	N/A	0.935	0.508	0.743	2e-46
P46782	204	40S ribosomal protein S5	yes	N/A	0.790	0.480	0.86	3e-46
Q5E988	204	40S ribosomal protein S5	yes	N/A	0.790	0.480	0.86	3e-46
P97461	204	40S ribosomal protein S5	yes	N/A	0.782	0.475	0.865	4e-46
P24050	204	40S ribosomal protein S5	no	N/A	0.814	0.495	0.811	1e-44
Q9VFE4	230	40S ribosomal protein S5b	no	N/A	0.758	0.408	0.819	1e-42
P49041	210	40S ribosomal protein S5	yes	N/A	0.895	0.528	0.645	2e-39
Q08364	210	40S ribosomal protein S5	N/A	N/A	0.903	0.533	0.609	2e-38
Q9ZUT9	207	40S ribosomal protein S5-	yes	N/A	0.717	0.429	0.777	6e-37
O65731	197	40S ribosomal protein S5	N/A	N/A	0.733	0.461	0.760	8e-37

>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=2 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/117 (74%), Positives = 99/117 (84%), Gaps = 1/117 (0%)

Query: 8   DPAYPSESTGGPVGL-SSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFL 66
           +PA P E+      L +++ +  ELPEIKLFGRWSCDDV V+D+SLQDYI+VKEK A++L
Sbjct: 14  EPAAPMEAEVAETILETNVVSTTELPEIKLFGRWSCDDVTVNDISLQDYISVKEKFARYL 73

Query: 67  PHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           PHSAGRYAAKRFRKAQCPIVERLT SLMM GRNN KKLMA RIVKH+FEIIHLLTGE
Sbjct: 74  PHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGE 130

Drosophila melanogaster (taxid: 7227)

>sp|P46782|RS5_HUMAN 40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 93/100 (93%), Gaps = 2/100 (2%)

Query: 26  AAPA--ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQC 83
           AAPA  E P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQC
Sbjct: 7   AAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQC 66

Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           PIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct: 67  PIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

Homo sapiens (taxid: 9606)

>sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 93/100 (93%), Gaps = 2/100 (2%)

Query: 26  AAPA--ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQC 83
           AAPA  E P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQC
Sbjct: 7   AAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQC 66

Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           PIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct: 67  PIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

Bos taurus (taxid: 9913)

>sp|P97461|RS5_MOUSE 40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 84/97 (86%), Positives = 91/97 (93%)

Query: 27  APAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIV 86
           A AE P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQCPIV
Sbjct: 10  AVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIV 69

Query: 87  ERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           ERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct: 70  ERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

Mus musculus (taxid: 10090)

>sp|P24050|RS5_RAT 40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=1 SV=3

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 91/101 (90%)

Query: 23  SSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQ 82
           ++  A AE P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAA  FRKAQ
Sbjct: 6   TATPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQ 65

Query: 83  CPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           CPIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct: 66  CPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

Rattus norvegicus (taxid: 10116)

>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/94 (81%), Positives = 86/94 (91%)

Query: 30  ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERL 89
           E PEIKLFGRW+CDD+ +SD+SLQDYIAVKEK A++LPHSAGRYAAKRFRKAQCPIVERL
Sbjct: 39  EWPEIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERL 98

Query: 90  TNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           T+ LMM GR+N KKL+A RIVKHAFEIIHLLT E
Sbjct: 99  TSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSE 132

Drosophila melanogaster (taxid: 7227)

>sp|P49041|RS5_CAEEL 40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=3 SV=1

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 92/124 (74%), Gaps = 13/124 (10%)

Query: 1   MAEDWDADPAYPSESTGGPVGLSSIAAPA-ELPEIKLFGRWSCDDVQVSDMSLQDYIAVK 59
           MA++W            G   + + AAPA E PE+ LFG+WS   V VSD+SL DYI VK
Sbjct: 1   MADNW------------GSENVVADAAPATEAPEVALFGKWSLQSVNVSDISLVDYIPVK 48

Query: 60  EKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHL 119
           EK+AK+LPHSAGR+  +RFRKA CPIVERL NSLMMHGRNN KKLM VRIVKHAFEII+L
Sbjct: 49  EKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYL 108

Query: 120 LTGE 123
           LTGE
Sbjct: 109 LTGE 112

Caenorhabditis elegans (taxid: 6239)

>sp|Q08364|RS5_PODCA 40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 91/123 (73%), Gaps = 11/123 (8%)

Query: 1   MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKE 60
           M E W      P E+   P  +       E+ +IKLFG+W  + + +SD+SL DYIAVK+
Sbjct: 1   MEESW----GEPGETVEEPTSI-------EVQDIKLFGKWPLEGLNISDISLTDYIAVKD 49

Query: 61  KNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLL 120
            +A +LPH+A RYA KRFRKAQCPIVERLTNSLMMHGRNN KKLMAVRIV+H+FEI+HLL
Sbjct: 50  NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLL 109

Query: 121 TGE 123
           TGE
Sbjct: 110 TGE 112

Podocoryne carnea (taxid: 6096)

>sp|Q9ZUT9|RS51_ARATH 40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 79/90 (87%), Gaps = 1/90 (1%)

Query: 33  EIKLFGRWSCDDVQVSDMSLQDYIAVK-EKNAKFLPHSAGRYAAKRFRKAQCPIVERLTN 91
           E+KLF RWS DDV V+D+SL DYI V+  K+A F+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 92  SLMMHGRNNAKKLMAVRIVKHAFEIIHLLT 121
           SLMMHGRNN KKLMAVRIVKHA EIIHLL+
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLS 107

Arabidopsis thaliana (taxid: 3702)

>sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1

 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 80/92 (86%), Gaps = 1/92 (1%)

Query: 33  EIKLFGRWSCDDVQVSDMSLQDYIAV-KEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTN 91
           E+KLF RWS DDVQ+SD+SL DYI V   K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 92  SLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           SLMMHGRNN KKLMAVRI+KHA EIIHLLT +
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQ 99

Cicer arietinum (taxid: 3827)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
110671422	221	putative S5e ribosomal protein [Diaphori	0.991	0.556	1.0	3e-68
242019255	205	40S ribosomal protein S5, putative [Pedi	0.814	0.492	0.950	1e-50
322801454	216	hypothetical protein SINV_07427 [Solenop	0.798	0.458	0.939	2e-50
307167667	216	40S ribosomal protein S5 [Camponotus flo	0.798	0.458	0.939	2e-50
332026745	216	40S ribosomal protein S5 [Acromyrmex ech	0.798	0.458	0.939	2e-50
50344462	212	S5e ribosomal protein [Timarcha balearic	0.919	0.537	0.813	4e-50
66509908	216	PREDICTED: 40S ribosomal protein S5 isof	0.951	0.546	0.804	5e-50
350417230	216	PREDICTED: 40S ribosomal protein S5a-lik	0.919	0.527	0.818	1e-49
307645331	199	ribosomal protein S5 [Micropterix calthe	0.838	0.522	0.896	2e-49
383863599	216	PREDICTED: 40S ribosomal protein S5a-lik	0.919	0.527	0.818	3e-49

>gi|110671422|gb|ABG81962.1| putative S5e ribosomal protein [Diaphorina citri]

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKE 60
           MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKE
Sbjct: 1   MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKE 60

Query: 61  KNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLL 120
           KNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLL
Sbjct: 61  KNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLL 120

Query: 121 TGE 123
           TGE
Sbjct: 121 TGE 123

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019255|ref|XP_002430077.1| 40S ribosomal protein S5, putative [Pediculus humanus corporis] gi|212515158|gb|EEB17339.1| 40S ribosomal protein S5, putative [Pediculus humanus corporis]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/102 (95%), Positives = 99/102 (97%), Gaps = 1/102 (0%)

Query: 23  SSIAA-PAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKA 81
           SS+AA  AELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAK+LPHSAGRYAAKRFRKA
Sbjct: 6   SSVAAQAAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKYLPHSAGRYAAKRFRKA 65

Query: 82  QCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           QCPIVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLLTGE
Sbjct: 66  QCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 107

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801454|gb|EFZ22115.1| hypothetical protein SINV_07427 [Solenopsis invicta]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/99 (93%), Positives = 97/99 (97%)

Query: 25  IAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCP 84
           +A PAELPEIKLFGRW+CDDVQV+DMSLQDYIAVKEKNAK+LPHSAGRYAAKRFRKAQCP
Sbjct: 20  VAMPAELPEIKLFGRWNCDDVQVNDMSLQDYIAVKEKNAKYLPHSAGRYAAKRFRKAQCP 79

Query: 85  IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           IVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLLTGE
Sbjct: 80  IVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 118

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167667|gb|EFN61170.1| 40S ribosomal protein S5 [Camponotus floridanus]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/99 (93%), Positives = 97/99 (97%)

Query: 25  IAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCP 84
           +A PAELPEIKLFGRW+CDDVQV+DMSLQDYIAVKEKNAK+LPHSAGRYAAKRFRKAQCP
Sbjct: 20  VAMPAELPEIKLFGRWNCDDVQVNDMSLQDYIAVKEKNAKYLPHSAGRYAAKRFRKAQCP 79

Query: 85  IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           IVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLLTGE
Sbjct: 80  IVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 118

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026745|gb|EGI66854.1| 40S ribosomal protein S5 [Acromyrmex echinatior]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/99 (93%), Positives = 97/99 (97%)

Query: 25  IAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCP 84
           +A PAELPEIKLFGRW+CDDVQV+DMSLQDYIAVKEKNAK+LPHSAGRYAAKRFRKAQCP
Sbjct: 20  VALPAELPEIKLFGRWNCDDVQVNDMSLQDYIAVKEKNAKYLPHSAGRYAAKRFRKAQCP 79

Query: 85  IVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           IVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLLTGE
Sbjct: 80  IVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 118

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|50344462|emb|CAH04317.1| S5e ribosomal protein [Timarcha balearica]

 Score =  201 bits (511), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/123 (81%), Positives = 104/123 (84%), Gaps = 9/123 (7%)

Query: 1   MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKE 60
           MA+DW        E+ GG V    IA   ELPEIKLF RW+CDDVQVSDMSLQDYIAVKE
Sbjct: 1   MADDW------AEEAQGGGVLAPKIA---ELPEIKLFSRWNCDDVQVSDMSLQDYIAVKE 51

Query: 61  KNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLL 120
           KNAK+LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLL
Sbjct: 52  KNAKYLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLL 111

Query: 121 TGE 123
           TGE
Sbjct: 112 TGE 114

Source: Timarcha balearica

Species: Timarcha balearica

Genus: Timarcha

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66509908|ref|XP_624084.1| PREDICTED: 40S ribosomal protein S5 isoform 2 [Apis mellifera] gi|380025811|ref|XP_003696661.1| PREDICTED: 40S ribosomal protein S5-like [Apis florea]

 Score =  201 bits (510), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 99/123 (80%), Positives = 104/123 (84%), Gaps = 5/123 (4%)

Query: 1   MAEDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKE 60
           MAE    D      +T  PV LS     AELPEIKLFGRW+CDDVQV+DMSLQDYIAVKE
Sbjct: 1   MAEMETYDDIVVPTTTTLPVALS-----AELPEIKLFGRWNCDDVQVNDMSLQDYIAVKE 55

Query: 61  KNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLL 120
           KNAK+LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLL
Sbjct: 56  KNAKYLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLL 115

Query: 121 TGE 123
           TG+
Sbjct: 116 TGD 118

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417230|ref|XP_003491320.1| PREDICTED: 40S ribosomal protein S5a-like [Bombus impatiens]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/121 (81%), Positives = 106/121 (87%), Gaps = 7/121 (5%)

Query: 3   EDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKN 62
           E +D D   P+ +T  PV LS     AELPEIKLFGRW+CDDVQV+DMSLQDYIAVKEKN
Sbjct: 5   ETYD-DIVVPTTTTL-PVALS-----AELPEIKLFGRWNCDDVQVNDMSLQDYIAVKEKN 57

Query: 63  AKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTG 122
           AK+LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLLTG
Sbjct: 58  AKYLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 117

Query: 123 E 123
           +
Sbjct: 118 D 118

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307645331|gb|ADN83482.1| ribosomal protein S5 [Micropterix calthella]

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 99/106 (93%), Gaps = 2/106 (1%)

Query: 20  VGLSSIAAP--AELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKR 77
           + + +I AP  AELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAK+LPHSAGRYA KR
Sbjct: 2   LAVETIPAPQMAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKYLPHSAGRYAHKR 61

Query: 78  FRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           FRKAQCPIVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLLTGE
Sbjct: 62  FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 107

Source: Micropterix calthella

Species: Micropterix calthella

Genus: Micropterix

Family: Micropterigidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863599|ref|XP_003707267.1| PREDICTED: 40S ribosomal protein S5a-like [Megachile rotundata]

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/121 (81%), Positives = 106/121 (87%), Gaps = 7/121 (5%)

Query: 3   EDWDADPAYPSESTGGPVGLSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKN 62
           E +D D   P+ +T  PV LS     AELPEIKLFGRW+CDDVQV+DMSLQDYIAVKEKN
Sbjct: 5   ETFD-DIVVPTATTL-PVTLS-----AELPEIKLFGRWNCDDVQVNDMSLQDYIAVKEKN 57

Query: 63  AKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTG 122
           AK+LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNN KKLMAVRIVKHAFEIIHLLTG
Sbjct: 58  AKYLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 117

Query: 123 E 123
           +
Sbjct: 118 D 118

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
ZFIN|ZDB-GENE-020419-12	204	rps5 "ribosomal protein S5" [D	0.790	0.480	0.84	1.8e-44
ZFIN|ZDB-GENE-060825-73	201	zgc:153322 "zgc:153322" [Danio	0.822	0.507	0.862	2.4e-44
UNIPROTKB|Q5E988	204	RPS5 "40S ribosomal protein S5	0.790	0.480	0.86	5.2e-42
UNIPROTKB|E2RIQ8	204	RPS5 "Uncharacterized protein"	0.790	0.480	0.86	5.2e-42
UNIPROTKB|P46782	204	RPS5 "40S ribosomal protein S5	0.790	0.480	0.86	5.2e-42
UNIPROTKB|F2Z5E6	204	RPS5 "Uncharacterized protein"	0.790	0.480	0.86	5.2e-42
MGI|MGI:1097682	204	Rps5 "ribosomal protein S5" [M	0.782	0.475	0.865	8.4e-42
FB|FBgn0002590	228	RpS5a "Ribosomal protein S5a"	0.935	0.508	0.743	1.7e-41
RGD|3601	204	Rps5 "ribosomal protein S5" [R	0.782	0.475	0.845	1.6e-40
FB|FBgn0038277	230	RpS5b "Ribosomal protein S5b"	0.758	0.408	0.819	2.1e-38

ZFIN|ZDB-GENE-020419-12 rps5 "ribosomal protein S5" [Danio rerio (taxid:7955)]

 Score = 439 (159.6 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 84/100 (84%), Positives = 93/100 (93%)

Query:    26 AAPA--ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQC 83
             AAPA  E PEIKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHS+GRYAAKRFRKAQC
Sbjct:     7 AAPAVAETPEIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSSGRYAAKRFRKAQC 66

Query:    84 PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             PIVER+TNS+MMHGRNN KKL+ VRIVKHAFEIIHLLTGE
Sbjct:    67 PIVERVTNSMMMHGRNNGKKLLTVRIVKHAFEIIHLLTGE 106

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

ZFIN|ZDB-GENE-060825-73 zgc:153322 "zgc:153322" [Danio rerio (taxid:7955)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 88/102 (86%), Positives = 96/102 (94%)

Query:    22 LSSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKA 81
             +++  APAELPE+KLFGRWSC+DVQVSDMSLQDYIAVKE  AKF+PHSAGRYAAKRFRKA
Sbjct:     2 VATAPAPAELPEVKLFGRWSCEDVQVSDMSLQDYIAVKENYAKFIPHSAGRYAAKRFRKA 61

Query:    82 QCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             QCPIVER+TNSLMMHGRNN KKLMAVRI+KHA EIIHLLTGE
Sbjct:    62 QCPIVERVTNSLMMHGRNNGKKLMAVRIMKHAMEIIHLLTGE 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q5E988 RPS5 "40S ribosomal protein S5" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 86/100 (86%), Positives = 93/100 (93%)

Query:    26 AAPA--ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQC 83
             AAPA  E P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQC
Sbjct:     7 AAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQC 66

Query:    84 PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             PIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct:    67 PIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006450 "regulation of translational fidelity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|E2RIQ8 RPS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 86/100 (86%), Positives = 93/100 (93%)

Query:    26 AAPA--ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQC 83
             AAPA  E P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQC
Sbjct:     7 AAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQC 66

Query:    84 PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             PIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct:    67 PIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006450 "regulation of translational fidelity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|P46782 RPS5 "40S ribosomal protein S5" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 86/100 (86%), Positives = 93/100 (93%)

Query:    26 AAPA--ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQC 83
             AAPA  E P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQC
Sbjct:     7 AAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQC 66

Query:    84 PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             PIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct:    67 PIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

GO:0006412 "translation" evidence=IC;IGI;NAS;TAS

GO:0006450 "regulation of translational fidelity" evidence=IGI

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=NAS

GO:0006413 "translational initiation" evidence=IC;TAS

GO:0003729 "mRNA binding" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

UNIPROTKB|F2Z5E6 RPS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 86/100 (86%), Positives = 93/100 (93%)

Query:    26 AAPA--ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQC 83
             AAPA  E P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQC
Sbjct:     7 AAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQC 66

Query:    84 PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             PIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct:    67 PIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006450 "regulation of translational fidelity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

MGI|MGI:1097682 Rps5 "ribosomal protein S5" [Mus musculus (taxid:10090)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 84/97 (86%), Positives = 91/97 (93%)

Query:    27 APAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIV 86
             A AE P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQCPIV
Sbjct:    10 AVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIV 69

Query:    87 ERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             ERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct:    70 ERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

GO:0003723 "RNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0006450 "regulation of translational fidelity" evidence=ISO

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

FB|FBgn0002590 RpS5a "Ribosomal protein S5a" [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 87/117 (74%), Positives = 99/117 (84%)

Query:     8 DPAYPSESTGGPVGL-SSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFL 66
             +PA P E+      L +++ +  ELPEIKLFGRWSCDDV V+D+SLQDYI+VKEK A++L
Sbjct:    14 EPAAPMEAEVAETILETNVVSTTELPEIKLFGRWSCDDVTVNDISLQDYISVKEKFARYL 73

Query:    67 PHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             PHSAGRYAAKRFRKAQCPIVERLT SLMM GRNN KKLMA RIVKH+FEIIHLLTGE
Sbjct:    74 PHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGE 130

GO:0006412 "translation" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0003723 "RNA binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

RGD|3601 Rps5 "ribosomal protein S5" [Rattus norvegicus (taxid:10116)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 82/97 (84%), Positives = 89/97 (91%)

Query:    27 APAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIV 86
             A AE P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAA  FRKAQCPIV
Sbjct:    10 AVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIV 69

Query:    87 ERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             ERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct:    70 ERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA;ISO

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA;ISO

GO:0006450 "regulation of translational fidelity" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA;ISO;ISS;IDA

GO:0030529 "ribonucleoprotein complex" evidence=ISO

FB|FBgn0038277 RpS5b "Ribosomal protein S5b" [Drosophila melanogaster (taxid:7227)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 77/94 (81%), Positives = 86/94 (91%)

Query:    30 ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERL 89
             E PEIKLFGRW+CDD+ +SD+SLQDYIAVKEK A++LPHSAGRYAAKRFRKAQCPIVERL
Sbjct:    39 EWPEIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERL 98

Query:    90 TNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             T+ LMM GR+N KKL+A RIVKHAFEIIHLLT E
Sbjct:    99 TSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSE 132

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54MA6	RS5_DICDI	No assigned EC number	0.6853	0.7016	0.4578	yes	N/A
Q9YAU8	RS7_AERPE	No assigned EC number	0.5274	0.7096	0.4292	yes	N/A
P46782	RS5_HUMAN	No assigned EC number	0.86	0.7903	0.4803	yes	N/A
P26783	RS5_YEAST	No assigned EC number	0.6373	0.7177	0.3955	yes	N/A
P49041	RS5_CAEEL	No assigned EC number	0.6451	0.8951	0.5285	yes	N/A
A1RSA1	RS7_PYRIL	No assigned EC number	0.5113	0.6854	0.3794	yes	N/A
Q8TXJ3	RS7_METKA	No assigned EC number	0.5161	0.7258	0.4568	yes	N/A
Q9P3T6	RS5B_SCHPO	No assigned EC number	0.6276	0.7419	0.4532	yes	N/A
Q24186	RS5A_DROME	No assigned EC number	0.7435	0.9354	0.5087	yes	N/A
P97461	RS5_MOUSE	No assigned EC number	0.8659	0.7822	0.4754	yes	N/A
Q5E988	RS5_BOVIN	No assigned EC number	0.86	0.7903	0.4803	yes	N/A
B8D6G4	RS7_DESK1	No assigned EC number	0.5494	0.7096	0.4444	yes	N/A
Q9ZUT9	RS51_ARATH	No assigned EC number	0.7777	0.7177	0.4299	yes	N/A
O14277	RS5A_SCHPO	No assigned EC number	0.6444	0.7096	0.4334	yes	N/A
O24111	RS5_NICPL	No assigned EC number	0.9259	0.4354	0.3506	N/A	N/A
Q8ZYK5	RS7_PYRAE	No assigned EC number	0.5111	0.7016	0.3901	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
PTZ00091	193	PTZ00091, PTZ00091, 40S ribosomal protein S5; Prov	3e-55
TIGR01028	186	TIGR01028, S7_S5_E_A, ribosomal protein S7(archaea	4e-49
PRK04027	195	PRK04027, PRK04027, 30S ribosomal protein S7P; Rev	2e-37
COG0049	148	COG0049, RpsG, Ribosomal protein S7 [Translation,	4e-17
pfam00177	149	pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e	1e-09

>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional

 Score =  170 bits (433), Expect = 3e-55
 Identities = 71/91 (78%), Positives = 79/91 (86%)

Query: 33  EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 92
           E KLFG+WS DDVQVSD+SL+DYIAV  K + F+PH+AGRY  KRFRKAQCPIVERL NS
Sbjct: 5   EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNS 64

Query: 93  LMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           LM HGRNN KKL+AVRIVKHAFEIIHLLT +
Sbjct: 65  LMFHGRNNGKKLLAVRIVKHAFEIIHLLTDK 95

Length = 193

>gnl|CDD|211618 TIGR01028, S7_S5_E_A, ribosomal protein S7(archaeal)/S5(eukaryotic)

 Score =  154 bits (391), Expect = 4e-49
 Identities = 57/91 (62%), Positives = 70/91 (76%), Gaps = 3/91 (3%)

Query: 33  EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 92
           EIK+FG+WS DDV+V D SL+DYI ++ K   ++PH+AGR+A K+FRKA+ PIVERL N 
Sbjct: 1   EIKVFGKWSTDDVEVKDPSLKDYINLEPK---YVPHTAGRHAKKQFRKAKVPIVERLINK 57

Query: 93  LMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           +M  GRNN KKL A RIVK AFEII   TGE
Sbjct: 58  VMRSGRNNGKKLKAYRIVKEAFEIIEKRTGE 88

This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 186

>gnl|CDD|235204 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed

 Score =  125 bits (315), Expect = 2e-37
 Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 3/95 (3%)

Query: 29  AELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVER 88
           AE  EIKLFG+W  ++V+V D SL+ YI +       +PH+ GR+A K+F KA+ PIVER
Sbjct: 6   AEPMEIKLFGKWDVEEVEVRDPSLKRYINLTPV---LVPHTGGRHAKKQFGKAEVPIVER 62

Query: 89  LTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           L N LM   RN  KK  A  IVK AFEII   T +
Sbjct: 63  LINKLMRTERNTGKKQKAYNIVKEAFEIIEKRTKQ 97

Length = 195

>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

 Score = 71.5 bits (176), Expect = 4e-17
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 66  LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             H+AG+       K    IVERL N +M  G    KK +A +IV  AF+II   TG+
Sbjct: 2   RRHTAGKREVLPDPKYNSVIVERLINKIMRDG----KKSLAEKIVYGAFDIIEKKTGQ 55

Length = 148

>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 77  RFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           ++      +VE+L N LM  G    KK +A +IV  A EII   TG+
Sbjct: 17  KYNS---ALVEKLINKLMKDG----KKSLAEKIVYDALEIIEEKTGK 56

This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
PRK04027	195	30S ribosomal protein S7P; Reviewed	100.0
PTZ00091	193	40S ribosomal protein S5; Provisional	100.0
TIGR01028	186	S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukary	100.0
KOG3291|consensus	208		99.96
COG0049	148	RpsG Ribosomal protein S7 [Translation, ribosomal	99.74
PF00177	148	Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro:	99.14
TIGR01029	154	rpsG_bact ribosomal protein S7, bacterial/organell	98.93
PRK05302	156	30S ribosomal protein S7; Validated	98.88
CHL00053	155	rps7 ribosomal protein S7	98.77

>PRK04027 30S ribosomal protein S7P; Reviewed

Probab=100.00  E-value=6.6e-45  Score=287.84  Aligned_cols=93  Identities=52%  Similarity=0.758  Sum_probs=89.3

Q ss_pred             CCCCccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHH
Q psy10067         28 PAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAV  107 (124)
Q Consensus        28 ~~~~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~  107 (124)
                      .....++|||||||++||+|+||||++||||+|   +++|||+|||++|||+||+|+|||||||+||++|||+|||++|+
T Consensus         5 ~~~~~~~~lf~kw~~~~v~~~d~~l~~yi~~~~---~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~~~n~GKK~~A~   81 (195)
T PRK04027          5 EAEPMEIKLFGKWDVEEVEVRDPSLKRYINLTP---VLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAY   81 (195)
T ss_pred             cccchhhhhhCCCCccceeEcccchHhheeecc---eecCcccccccccCcccccCHHHHHHHHHHhccCccCCcHHHHH
Confidence            345568999999999999999999999999997   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCC
Q psy10067        108 RIVKHAFEIIHLLTGE  123 (124)
Q Consensus       108 ~IV~~AfeII~~kT~~  123 (124)
                      +|||+|||||+++|++
T Consensus        82 ~Iv~~AfeiI~~kT~~   97 (195)
T PRK04027         82 NIVKEAFEIIEKRTKQ   97 (195)
T ss_pred             HHHHHHHHHHHHHHCC
Confidence            9999999999999986

>PTZ00091 40S ribosomal protein S5; Provisional

Probab=100.00  E-value=7.1e-45  Score=287.40  Aligned_cols=93  Identities=76%  Similarity=1.185  Sum_probs=90.3

Q ss_pred             CccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHH
Q psy10067         31 LPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIV  110 (124)
Q Consensus        31 ~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV  110 (124)
                      ..++|||||||++||+|+||||++||+|+++.++++|||+|||++|+|+|++|+|||||||+||++|||+|||++|++||
T Consensus         3 ~~~~~lf~kw~~~~v~~~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~iVerLiN~lM~~grn~GKK~~A~~IV   82 (193)
T PTZ00091          3 ANEPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIV   82 (193)
T ss_pred             CccchhhCCcCcccCeecCcCHHHHhhcccCCceeeccccchhhcCccCcccCHHHHHHHHHHhccCccCCcHHHHHHHH
Confidence            45789999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q psy10067        111 KHAFEIIHLLTGE  123 (124)
Q Consensus       111 ~~AfeII~~kT~~  123 (124)
                      |+|||||+++||+
T Consensus        83 ~~AfeiI~~~t~~   95 (193)
T PTZ00091         83 KHAFEIIHLLTDK   95 (193)
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999999986

>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic)

Probab=100.00  E-value=1.6e-41  Score=266.68  Aligned_cols=88  Identities=65%  Similarity=0.998  Sum_probs=85.8

Q ss_pred             cccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHHHH
Q psy10067         33 EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKH  112 (124)
Q Consensus        33 eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~  112 (124)
                      ++|||||||++||+|+||||++||||++   +++|||+|||++|+|+|++||||+||||.||++|||+|||++|++|||+
T Consensus         1 ~~~lf~kw~~~~v~~~d~~l~~yi~~~~---~~~pht~gr~~~k~f~k~~~~iV~rliN~lM~~g~n~GKK~~A~kIv~~   77 (186)
T TIGR01028         1 EIKVFGKWSTDDVEVKDPSLKDYINLEP---KYVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE   77 (186)
T ss_pred             CccccCCcCCccceecCCCHHhhhhcCc---eeccchhhhhhccccCcccCHHHHHHHHHHhccCcCCCcHHHHHHHHHH
Confidence            4799999999999999999999999997   8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q psy10067        113 AFEIIHLLTGE  123 (124)
Q Consensus       113 AfeII~~kT~~  123 (124)
                      ||+||+.+|++
T Consensus        78 A~~iI~~~t~~   88 (186)
T TIGR01028        78 AFEIIEKRTGE   88 (186)
T ss_pred             HHHHHHHHhCC
Confidence            99999999985

This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.

>KOG3291|consensus

Probab=99.96  E-value=8.5e-30  Score=203.68  Aligned_cols=97  Identities=67%  Similarity=0.932  Sum_probs=93.4

Q ss_pred             CCCCCccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHH
Q psy10067         27 APAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMA  106 (124)
Q Consensus        27 ~~~~~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A  106 (124)
                      .+...++++||++|++++++++|+||.|||+++|++..++||++|||+.++|.||.|+++++|+|+||++|+|+|||.+|
T Consensus        16 ~~~~~~~~~~f~~~s~~~~~~~d~sl~dy~~~~~k~~~~~~~~~~~~~~~~~~ka~~~~~e~l~~~l~n~~~~~GKK~~a   95 (208)
T KOG3291|consen   16 RVAETGEIKLFEKWSEDSVEFSDISLQDYIALKPKDLTQLPHSAGRYAKKRFRKAQCPIVERLINKLMNHIMKNGKKLLA   95 (208)
T ss_pred             hhcccchhHHHHHhhcccccccccccccccccccccccccccccchhhhhhhhhccccHHHHHHHHHHHHHHhcccHHHH
Confidence            35677799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCC
Q psy10067        107 VRIVKHAFEIIHLLTGE  123 (124)
Q Consensus       107 ~~IV~~AfeII~~kT~~  123 (124)
                      .+||++||+||+.+|++
T Consensus        96 ~~Iv~~aleiI~~~t~~  112 (208)
T KOG3291|consen   96 RRIVKHALEIIKRLTER  112 (208)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999975

>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=1.1e-18  Score=133.97  Aligned_cols=54  Identities=41%  Similarity=0.474  Sum_probs=52.9

Q ss_pred             eeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         66 LPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        66 vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      .||++||+...+|.|.+++||+||||+||++    |||++|++|||+|||||+++||+
T Consensus         2 r~~~~~kr~~~~dpk~~~~iv~rliN~iM~~----GKK~~A~~Ivy~Af~ii~~kTg~   55 (148)
T COG0049           2 RRHTAGKREVLPDPKYNSVIVERLINKIMRD----GKKSLAEKIVYGAFDIIEKKTGQ   55 (148)
T ss_pred             CCCCCCcccCCCCcccccHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHCC
Confidence            6999999999999999999999999999998    99999999999999999999997

>PF00177 Ribosomal_S7: Ribosomal protein S7p/S5e; InterPro: IPR023798 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.14  E-value=5.3e-11  Score=89.28  Aligned_cols=53  Identities=38%  Similarity=0.482  Sum_probs=48.1

Q ss_pred             eeccCcchhhh--hhcccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         66 LPHSAGRYAAK--RFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        66 vPHTaGR~~~k--~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      +||+ |||+++  ...+-++++|++|||.||.+    |||++|++||++||++|+.+|++
T Consensus         1 m~~~-~~~~k~~~~~~~~~~~lv~k~in~lmk~----GkK~~A~~i~~~al~~i~~~~~~   55 (148)
T PF00177_consen    1 MSRK-GRYKKKKIPDPKFNDPLVKKFINRLMKD----GKKSKAEKIVYKALEIIKKKTNK   55 (148)
T ss_dssp             SSTS-SS-SSSS-SBTTTCGHHHHHHHHHHHST----TBHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCC-CCCCCCCCCCcccccHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhhcccCC
Confidence            4899 999999  66678899999999999999    99999999999999999998875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S7 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S7 is known to bind directly to part of the 3'end of 16S ribosomal RNA. It belongs to a family of ribosomal proteins which have been grouped on the basis of sequence similarities [, , ]. This entry represents the S7 structural domain, which consists of a bundle of six helices and an extended beta hairpin between helices 3 and 4, with two or more RNA-binding sites on its surface [].; PDB: 3IZ6_F 3V28_G 2WRN_G 2HHH_G 2V46_G 3KNL_G 2UUC_G 2Y16_G 2Y0W_G 2J02_G ....

>TIGR01029 rpsG_bact ribosomal protein S7, bacterial/organelle

Probab=98.93  E-value=1.1e-09  Score=83.42  Aligned_cols=38  Identities=37%  Similarity=0.454  Sum_probs=36.3

Q ss_pred             CChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         82 QCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        82 ~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      ++++|++|||.||++    |||++|++|||+||++|+.+|++
T Consensus        17 ~~~lv~~lin~lM~~----GKK~~A~kI~~~al~~i~~~~~~   54 (154)
T TIGR01029        17 GSVLLNKFINRVMKD----GKKSLAESIVYKAFERIAKKTGE   54 (154)
T ss_pred             CCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence            499999999999999    99999999999999999999875

This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028.

>PRK05302 30S ribosomal protein S7; Validated

Probab=98.88  E-value=2.2e-09  Score=82.01  Aligned_cols=38  Identities=37%  Similarity=0.503  Sum_probs=36.1

Q ss_pred             CChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         82 QCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        82 ~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      ++|+|++|||.||++    |||++|++||++||++|+.+|++
T Consensus        19 ~~~lv~~lin~lmk~----GKK~~A~kI~~~al~~I~~~~~~   56 (156)
T PRK05302         19 GSVLVTKFINKLMLD----GKKSVAEKIVYGALDIIEEKTGK   56 (156)
T ss_pred             CCHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence            489999999999999    99999999999999999999875

>CHL00053 rps7 ribosomal protein S7

Probab=98.77  E-value=8.5e-09  Score=78.59  Aligned_cols=38  Identities=32%  Similarity=0.380  Sum_probs=36.3

Q ss_pred             CChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         82 QCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        82 ~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      ++++|++|||.||.+    |||++|++||++||++|+.+|++
T Consensus        19 ~~~lv~~lin~lm~~----GKK~~A~kIv~~al~~i~~~~~~   56 (155)
T CHL00053         19 RNRLVNMLVNRILKS----GKKSLAYRIVYRALKKIQQKTEK   56 (155)
T ss_pred             CcHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence            499999999999999    99999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
2zkq_g	204	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-47
3iz6_F	200	Localization Of The Small Subunit Ribosomal Protein		3e-36
3izb_F	225	Localization Of The Small Subunit Ribosomal Protein		4e-31
3jyv_G	186	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-30
2xzm_G	200	Crystal Structure Of The Eukaryotic 40s Ribosomal S		9e-28
3j0l_T	192	Core Of Mammalian 80s Pre-Ribosome In Complex With		9e-28
3zey_2	190	High-resolution Cryo-electron Microscopy Structure		7e-26
1s1h_G	150	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-19
3j20_H	215	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-15
1iqv_A	218	Crystal Structure Analysis Of The Archaebacterial R		3e-15

>pdb|2ZKQ|GG Chain g, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204

Iteration: 1
 Score =  183 bits (464), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 93/100 (93%), Gaps = 2/100 (2%)
Query: 26  AAPA--ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQC 83
           AAPA  E P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQC
Sbjct: 7   AAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQC 66
Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           PIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct: 67  PIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

>pdb|3IZ6|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 200

Iteration: 1
 Score =  146 bits (368), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/88 (77%), Positives = 78/88 (88%), Gaps = 1/88 (1%)
Query: 35  KLFGRWSCDDVQVSDMSLQDYIAVKE-KNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSL 93
           KLF  WS +DVQV+D+SL DY+AV   K+A +LPH+AGRY+AKRFRKAQCP+VERLTNSL
Sbjct: 13  KLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSL 72
Query: 94  MMHGRNNAKKLMAVRIVKHAFEIIHLLT 121
           MMHGRNN KK+MAVRIVKHA EIIHLLT
Sbjct: 73  MMHGRNNGKKIMAVRIVKHAMEIIHLLT 100

>pdb|3IZB|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 225

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 74/91 (81%), Gaps = 2/91 (2%)
Query: 33  EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 92
           EIKLF +WS ++V+V D SL DY+ V++    F+ H+AGRYA KRFRKAQCPI+ERLTNS
Sbjct: 39  EIKLFNKWSFEEVEVKDASLVDYVQVRQ--PIFVAHTAGRYANKRFRKAQCPIIERLTNS 96
Query: 93  LMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           LMM+GRNN KKL AVRI+KH  +II++LT +
Sbjct: 97  LMMNGRNNGKKLKAVRIIKHTLDIINVLTDQ 127

>pdb|3JYV|G Chain G, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 186

Iteration: 1
 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Query: 34  IKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSL 93
           IKLF +WS ++V+V D SL DY+ V++    F+ H+AGRYA KRFRKAQCPI+ERLTNSL
Sbjct: 1   IKLFNKWSFEEVEVKDASLVDYVQVRQ--PIFVAHTAGRYANKRFRKAQCPIIERLTNSL 58
Query: 94  MMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           MM+GRNN KKL AVRI+KH  +II++LT +
Sbjct: 59  MMNGRNNGKKLKAVRIIKHTLDIINVLTDQ 88

>pdb|2XZM|G Chain G, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 200

Iteration: 1
 Score =  118 bits (295), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 35  KLFGRWSCDDVQVSDMSLQDYIA-VKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSL 93
           KLFG+W+ D+V++ D   Q+YIA    K+  F+PH+AGRY  K+FRK QCPIVERL  +L
Sbjct: 12  KLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTL 71
Query: 94  MMHGRNNAKKLMAVRIVKHAFEIIHLLTG 122
           M HGRN  KK + +++VK+AFEIIHL+TG
Sbjct: 72  MFHGRNAGKKALCIKVVKNAFEIIHLVTG 100

>pdb|3J0L|T Chain T, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 192

Iteration: 1
 Score =  118 bits (295), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 35  KLFGRWSCDDVQVSDMSLQDYIA-VKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSL 93
           KLFG+W+ D+V++ D   Q+YIA    K+  F+PH+AGRY  K+FRK QCPIVERL  +L
Sbjct: 4   KLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTL 63
Query: 94  MMHGRNNAKKLMAVRIVKHAFEIIHLLTG 122
           M HGRN  KK + +++VK+AFEIIHL+TG
Sbjct: 64  MFHGRNAGKKALCIKVVKNAFEIIHLVTG 92

>pdb|3ZEY|2 Chain 2, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 190

Iteration: 1
 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 3/89 (3%)
Query: 35  KLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLM 94
           KLF +WS +++Q ++++L DYI    +   ++PHSAGR+  KRFRKA+ PIVERLTN LM
Sbjct: 7   KLFNKWSYENLQTTEIALNDYIT---RTPTYVPHSAGRWQKKRFRKARIPIVERLTNGLM 63
Query: 95  MHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
             GR N KKL AVR+V+H  EIIHLLT +
Sbjct: 64  FKGRGNGKKLQAVRLVRHTLEIIHLLTDQ 92

>pdb|1S1H|G Chain G, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i. Length = 150

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 72  RYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           RYA KRFRKAQCPI+ERLTNSLMM+GRNN KKL AVRI+KH  +II++LT +
Sbjct: 1   RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQ 52

>pdb|3J20|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 215

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 19/107 (17%)
Query: 33  EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 92
           EIK+ GRWS +DV+V D SL+ YI ++    + LPH+ GR+A K F KA   IVERL N 
Sbjct: 14  EIKVMGRWSTEDVEVRDPSLKPYINLE---PRLLPHTHGRHAKKHFGKANVHIVERLINK 70
Query: 93  LMMHGRN----------------NAKKLMAVRIVKHAFEIIHLLTGE 123
           +M  G +                N+KK+ A  +VK AF+II   TG+
Sbjct: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGK 117

>pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archaebacterial Ribosomal Protein S7 Length = 218

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 19/107 (17%)
Query: 33  EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 92
           EIK+ GRWS +DV+V D SL+ YI ++    + LPH+ GR+A K F KA   IVERL N 
Sbjct: 17  EIKVMGRWSTEDVEVKDPSLKPYINLE---PRLLPHTHGRHAKKHFGKANVHIVERLINK 73
Query: 93  LMMHGRN----------------NAKKLMAVRIVKHAFEIIHLLTGE 123
           +M  G +                N+KK+ A  +VK AF+II   TG+
Sbjct: 74  VMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGK 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
2zkq_g	204	40S ribosomal protein S5E; protein-RNA complex, 40	2e-54
2xzm_G	200	Ribosomal protein S7 containing protein; ribosome,	1e-50
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-50
1iqv_A	218	Ribosomal protein S7; RNA-binding, decoding center	7e-45

>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris} Length = 204

 Score =  168 bits (427), Expect = 2e-54
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query: 23  SSIAAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQ 82
           ++  A AE P+IKLFG+WS DDVQ++D+SLQDYIAVKEK AK+LPHSAGRYAAKRFRKAQ
Sbjct: 6   TAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQ 65

Query: 83  CPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           CPIVERLTNS+MMHGRNN KKLM VRIVKHAFEIIHLLTGE
Sbjct: 66  CPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGE 106

>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T Length = 200

 Score =  158 bits (402), Expect = 1e-50
 Identities = 51/98 (52%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 27  APAELPEIKLFGRWSCDDVQVSDMSLQDYIAV-KEKNAKFLPHSAGRYAAKRFRKAQCPI 85
                 + KLFG+W+ D+V++ D   Q+YIA    K+  F+PH+AGRY  K+FRK QCPI
Sbjct: 4   EKGFATQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPI 63

Query: 86  VERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           VERL  +LM HGRN  KK + +++VK+AFEIIHL+TG 
Sbjct: 64  VERLIGTLMFHGRNAGKKALCIKVVKNAFEIIHLVTGR 101

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  159 bits (404), Expect = 1e-50
 Identities = 58/98 (59%), Positives = 74/98 (75%), Gaps = 2/98 (2%)

Query: 26  AAPAELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPI 85
                  EIKLF +WS ++V+V D SL DY+ V++    F+ H+AGRYA KRFRKAQCPI
Sbjct: 32  EVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQP--IFVAHTAGRYANKRFRKAQCPI 89

Query: 86  VERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
           +ERLTNSLMM+GRNN KKL AVRI+KH  +II++LT +
Sbjct: 90  IERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQ 127

>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1 Length = 218

 Score =  144 bits (364), Expect = 7e-45
 Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 19/107 (17%)

Query: 33  EIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNS 92
           EIK+ GRWS +DV+V D SL+ YI ++    + LPH+ GR+A K F KA   IVERL N 
Sbjct: 17  EIKVMGRWSTEDVEVKDPSLKPYINLE---PRLLPHTHGRHAKKHFGKANVHIVERLINK 73

Query: 93  LMMHGRN----------------NAKKLMAVRIVKHAFEIIHLLTGE 123
           +M  G +                N+KK+ A  +VK AF+II   TG+
Sbjct: 74  VMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGK 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
2zkq_g	204	40S ribosomal protein S5E; protein-RNA complex, 40	100.0
2xzm_G	200	Ribosomal protein S7 containing protein; ribosome,	100.0
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	100.0
1iqv_A	218	Ribosomal protein S7; RNA-binding, decoding center	100.0
1rss_A	151	Ribosomal protein S7; RNA-binding, translation; 1.	99.24
1hus_A	155	Ribosomal protein S7; RNA-binding protein, decodin	99.22
3r8n_G	151	30S ribosomal protein S7; protein biosynthesis, RN	99.21
3gty_S	149	TF, 30S ribosomal protein S7; chaperone-client com	99.18
3i1m_G	179	30S ribosomal protein S7; ribosome structure, prot	99.17
3bbn_G	155	Ribosomal protein S7; small ribosomal subunit, spi	99.06

>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=4.7e-44  Score=283.12  Aligned_cols=94  Identities=87%  Similarity=1.342  Sum_probs=89.5

Q ss_pred             CCccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHH
Q psy10067         30 ELPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRI  109 (124)
Q Consensus        30 ~~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~I  109 (124)
                      +.+++|||||||++||+|+||||++||+|+.+.++|+|||+|||++|||+|++|+||+||||+||++|||+|||++|++|
T Consensus        13 ~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~~~~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~I   92 (204)
T 2zkq_g           13 ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRI   92 (204)
Confidence            34489999999999999999999999999766679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q psy10067        110 VKHAFEIIHLLTGE  123 (124)
Q Consensus       110 V~~AfeII~~kT~~  123 (124)
                      ||+||+||+++|++
T Consensus        93 vy~A~~~I~~kt~~  106 (204)
T 2zkq_g           93 VKHAFEIIHLLTGE  106 (204)
Confidence            99999999999975

>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T

Probab=100.00  E-value=2.8e-42  Score=272.19  Aligned_cols=96  Identities=53%  Similarity=0.977  Sum_probs=89.2

Q ss_pred             CCCCccccccccccCCCceeecCCcccceeec-cccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHH
Q psy10067         28 PAELPEIKLFGRWSCDDVQVSDMSLQDYIAVK-EKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMA  106 (124)
Q Consensus        28 ~~~~~eikLFgKW~~~dV~v~D~sL~~YI~l~-~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A  106 (124)
                      ..+..++|||||||++||+|+||||++||+|+ .++++++|||+|||++|||+|++++||+||||+||++|||+|||++|
T Consensus         5 ~~~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A   84 (200)
T 2xzm_G            5 KGFATQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALC   84 (200)
T ss_dssp             ----CCCCGGGSCCGGGCCCCSSSGGGSCSTTCTTTCCSSSCCCCCCSSSSSGGGGSCHHHHHHHHHSCSTTTCCCHHHH
T ss_pred             cccchhccccCCcCCCCeeecccchhhceeeccccCceecCCCcccccccccccccChHHHHHHHHHhcCCCCCCCHHHH
Confidence            34566899999999999999999999999995 67789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCC
Q psy10067        107 VRIVKHAFEIIHLLTGE  123 (124)
Q Consensus       107 ~~IV~~AfeII~~kT~~  123 (124)
                      ++|||+||+||+++|++
T Consensus        85 ~~Iv~~A~~~I~~kt~~  101 (200)
T 2xzm_G           85 IKVVKNAFEIIHLVTGR  101 (200)
T ss_dssp             HHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999985

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F

Probab=100.00  E-value=1.2e-41  Score=272.77  Aligned_cols=91  Identities=64%  Similarity=1.064  Sum_probs=87.5

Q ss_pred             CccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCccchhHHHHHHHH
Q psy10067         31 LPEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRNNAKKLMAVRIV  110 (124)
Q Consensus        31 ~~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV  110 (124)
                      ..++|||||||++||+|+||||++||||+  +++|+|||+|||++|||+|++||||+||||.||++|+|+|||++|++||
T Consensus        37 ~~~~~lf~kw~~~~v~v~d~~l~~yi~~~--~~~~~pht~gr~~~krf~K~~~piv~rliN~LM~~~~~~GKKs~A~~Iv  114 (225)
T 3u5c_F           37 QTEIKLFNKWSFEEVEVKDASLVDYVQVR--QPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRII  114 (225)
T ss_dssp             HHSSCCSSSCCCSSCCCSSTTTBTTBCCC--SCCSSSCCCCCCSSSTTGGGGSCHHHHHHHHHSCSGGGSSCHHHHHHHH
T ss_pred             chhhhhcCCCCCcceEEeccchhheeecc--CCceecccCCCccccCCCCCCCcHHHHHHHHHHhcCccCCcHHHHHHHH
Confidence            55899999999999999999999999998  2489999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q psy10067        111 KHAFEIIHLLTGE  123 (124)
Q Consensus       111 ~~AfeII~~kT~~  123 (124)
                      |+||++|+++|++
T Consensus       115 y~AfeiI~~kT~~  127 (225)
T 3u5c_F          115 KHTLDIINVLTDQ  127 (225)
T ss_dssp             HHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999999985

>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1

Probab=100.00  E-value=1.2e-37  Score=248.92  Aligned_cols=89  Identities=51%  Similarity=0.768  Sum_probs=62.7

Q ss_pred             ccccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhc---------------c
Q psy10067         32 PEIKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMM---------------H   96 (124)
Q Consensus        32 ~eikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~---------------~   96 (124)
                      +++|||||||++||+|+||||++||+++|   +++|||+|||++|+|+|++++||+||||+||+               +
T Consensus        16 ~~~~lf~kws~~dv~v~dp~l~~yi~~~p---~~~Pht~gr~~~k~f~k~~~~iV~rliN~lM~~~~~~~~~~~~~~~~~   92 (218)
T 1iqv_A           16 HEIKVMGRWSTEDVEVKDPSLKPYINLEP---RLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRRE   92 (218)
T ss_dssp             --CCBTTTBCCTTCCCCCTTTGGGSBCSC---C------------------CBHHHHHHHHHHTTCCC------------
T ss_pred             ccccccccccCCCCeecCCchhhhcccCC---ccCCCcchHHHhhhcccccChHHHHHHhHhhhcccccccccccccccc
Confidence            48999999999999999999999999988   79999999999999999999999999999999               9


Q ss_pred             Cc-cchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         97 GR-NNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        97 gr-N~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      || |+|||++|++|||+||+||+++|++
T Consensus        93 ~r~n~GKK~~A~~Iv~~Af~iI~~~t~~  120 (218)
T 1iqv_A           93 HRSLNSKKVRAYEVVKEAFKIIEKRTGK  120 (218)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence            99 9999999999999999999999985

>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...

Probab=99.24  E-value=5.2e-12  Score=95.49  Aligned_cols=40  Identities=33%  Similarity=0.342  Sum_probs=38.0

Q ss_pred             ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      +-+|+||+||||.||++    |||++|++|||+||++|+++|++
T Consensus        12 ~~~~~lv~kliN~lM~~----GKKs~A~~Iv~~a~~~i~~kt~~   51 (151)
T 1rss_A           12 VYGDVLVTAFINKIMRD----GKKNLAARIFYDACKIIQEKTGQ   51 (151)
T ss_dssp             TTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CcCCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence            45799999999999999    99999999999999999999985

>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1

Probab=99.22  E-value=7.1e-12  Score=95.11  Aligned_cols=40  Identities=38%  Similarity=0.504  Sum_probs=37.9

Q ss_pred             ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      +-+++||++|||.||++    |||++|++|||+||++|+++|++
T Consensus        16 ~y~~~lV~kliN~lM~~----GKKs~A~~Iv~~a~~~I~~kt~~   55 (155)
T 1hus_A           16 IYNSKLVTRLINKIMID----GKKSKAQKILYTAFDIIRERTGK   55 (155)
T ss_dssp             TTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CcCCHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHHHHcCC
Confidence            45799999999999999    99999999999999999999985

>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}

Probab=99.18  E-value=8.5e-12  Score=94.05  Aligned_cols=40  Identities=35%  Similarity=0.380  Sum_probs=37.6

Q ss_pred             ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      +-++++|+||||.||++    |||++|++|||+||++|+++|++
T Consensus        10 ~~~~~lv~kliN~lM~~----GKK~~A~~Iv~~a~~~I~~kt~~   49 (149)
T 3gty_S           10 VFGDVLVAKLINRVMWD----GKKTIAQKIVYGAFDIIREKTKK   49 (149)
T ss_dssp             SSCCHHHHHHHHHHCBT----TBTTTHHHHHHHHHHHHHHTTSS
T ss_pred             CcCCHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHcCC
Confidence            44799999999999998    99999999999999999999985

>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...

Probab=99.17  E-value=1.8e-11  Score=95.17  Aligned_cols=40  Identities=30%  Similarity=0.381  Sum_probs=37.9

Q ss_pred             ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      +-+|++|+||||.||++    |||++|++|||+||++|+++|++
T Consensus        17 ~y~~~lV~kliN~lM~~----GKKs~A~~Iv~~A~~~I~~kt~~   56 (179)
T 3i1m_G           17 KFGSELLAKFVNILMVD----GKKSTAESIVYSALETLAQRSGK   56 (179)
T ss_dssp             TTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CcCCHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHhCC
Confidence            45799999999999999    99999999999999999999985

>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.06  E-value=1.7e-11  Score=93.06  Aligned_cols=40  Identities=28%  Similarity=0.311  Sum_probs=37.3

Q ss_pred             ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      +-+++||++|||.||++    |||++|++|||+||++|+++|++
T Consensus        17 ~y~~~lv~kliN~lM~~----GKKs~A~~Iv~~a~~~i~~kt~~   56 (155)
T 3bbn_G           17 IYRNRLVNMLVNRILKH----GKKSLAYQILYRAVKKIQQKTET   56 (155)
T ss_dssp             TTCCSSGGGHHHHSCCT----TCHHHHHHHHSHHHHTTTTTCSS
T ss_pred             ccCCHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHcCC
Confidence            34789999999999999    99999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1iqva_	201	a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyroc	3e-40
d1rssa_	145	a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermo	3e-06
d1husa_	139	a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stear	3e-06
d2qalg1	150	a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherich	4e-06

>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  130 bits (329), Expect = 3e-40
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 19/106 (17%)

Query: 34  IKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSL 93
           IK+ GRWS +DV+V D SL+ YI ++    + LPH+ GR+A K F KA   IVERL N +
Sbjct: 1   IKVMGRWSTEDVEVKDPSLKPYINLE---PRLLPHTHGRHAKKHFGKANVHIVERLINKV 57

Query: 94  MMHGRN----------------NAKKLMAVRIVKHAFEIIHLLTGE 123
           M  G +                N+KK+ A  +VK AF+II   TG+
Sbjct: 58  MRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGK 103

>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]} Length = 145

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

 Score = 41.3 bits (97), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLT 121
            +V    N +M  G    KK +A RI   A +II   T
Sbjct: 10  VLVTAFINKIMRDG----KKNLAARIFYDACKIIQEKT 43

>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]} Length = 139

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGEV 124
            +V RL N +M+ G    KK  A +I+  AF+II   TG+ 
Sbjct: 12  KLVTRLINKIMIDG----KKSKAQKILYTAFDIIRERTGKD 48

>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]} Length = 150

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 84  PIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE 123
            ++ +  N LM+ G    KK  A  IV  A E +   +G+
Sbjct: 19  ELLAKFVNILMVDG----KKSTAESIVYSALETLAQRSGK 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1iqva_	201	Ribosomal protein S7 {Archaeon Pyrococcus horikosh	100.0
d2qalg1	150	Ribosomal protein S7 {Escherichia coli [TaxId: 562	99.08
d1rssa_	145	Ribosomal protein S7 {Thermus thermophilus [TaxId:	99.05
d1husa_	139	Ribosomal protein S7 {Bacillus stearothermophilus	99.04

>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.4e-43  Score=275.25  Aligned_cols=87  Identities=51%  Similarity=0.797  Sum_probs=66.3

Q ss_pred             ccccccccCCCceeecCCcccceeeccccceeeeccCcchhhhhhcccCChhHHHHHHHhhccCcc--------------
Q psy10067         34 IKLFGRWSCDDVQVSDMSLQDYIAVKEKNAKFLPHSAGRYAAKRFRKAQCPIVERLTNSLMMHGRN--------------   99 (124)
Q Consensus        34 ikLFgKW~~~dV~v~D~sL~~YI~l~~~~~~~vPHTaGR~~~k~F~Ka~~~IVERLIN~LM~~grN--------------   99 (124)
                      ||||||||++||+|+||||++||||+|   .+||||+|||++|||+||+|||||||||+||++|+|              
T Consensus         1 iklf~kw~~~~v~v~d~~l~~yi~~~~---~~~pht~gr~~~~~f~k~~~~iVERlin~lM~~G~~~~~~~~~~~~~~h~   77 (201)
T d1iqva_           1 IKVMGRWSTEDVEVKDPSLKPYINLEP---RLLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHR   77 (201)
T ss_dssp             CCBTTTBCCTTCCCCCTTTGGGSBCSC---C------------------CBHHHHHHHHHHTTCCC--------------
T ss_pred             CCccCCcCCccceEcCcchhheeecCc---eeecccccchhhhhcccccchHHHHHHHHhhhccccccccccccchhccc
Confidence            799999999999999999999999998   699999999999999999999999999999999999              


Q ss_pred             --chhHHHHHHHHHHHHHHHHHHhCC
Q psy10067        100 --NAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus       100 --~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                        ||||++|++|||+||+||+++|++
T Consensus        78 ~~~GKK~~A~kIv~~A~~iI~~kt~~  103 (201)
T d1iqva_          78 SLNSKKVRAYEVVKEAFKIIEKRTGK  103 (201)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHhhCC
Confidence              899999999999999999999986

>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=3.8e-11  Score=88.24  Aligned_cols=40  Identities=30%  Similarity=0.381  Sum_probs=37.4

Q ss_pred             ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      +-+++||+||||.||++    |||++|++|||+||++|+++|++
T Consensus        15 ~y~~~lV~kfiN~lM~~----GKK~~A~~iv~~al~~i~~~t~~   54 (150)
T d2qalg1          15 KFGSELLAKFVNILMVD----GKKSTAESIVYSALETLAQRSGK   54 (150)
T ss_dssp             SSCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CcCCHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHhcCC
Confidence            34699999999999999    99999999999999999999986

>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=6.4e-11  Score=86.11  Aligned_cols=39  Identities=33%  Similarity=0.365  Sum_probs=36.9

Q ss_pred             cCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         81 AQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        81 a~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      -++|+|+||||.||++    |||++|++|||+||++|+++|++
T Consensus         7 y~d~lv~k~in~lMk~----GKK~~A~~iv~~al~~i~~~~~~   45 (145)
T d1rssa_           7 YGDVLVTAFINKIMRD----GKKNLAARIFYDACKIIQEKTGQ   45 (145)
T ss_dssp             TCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCCHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHhccC
Confidence            4699999999999999    99999999999999999999975

>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Ribosomal protein S7
superfamily: Ribosomal protein S7
family: Ribosomal protein S7
domain: Ribosomal protein S7
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.04  E-value=6.9e-11  Score=85.69  Aligned_cols=40  Identities=38%  Similarity=0.504  Sum_probs=37.4

Q ss_pred             ccCChhHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHhCC
Q psy10067         80 KAQCPIVERLTNSLMMHGRNNAKKLMAVRIVKHAFEIIHLLTGE  123 (124)
Q Consensus        80 Ka~~~IVERLIN~LM~~grN~GKK~~A~~IV~~AfeII~~kT~~  123 (124)
                      +-+++||+||||.||++    |||++|++|||+||++|+++|++
T Consensus         8 ~y~~~lv~k~iN~lM~~----GKK~~A~kiv~~al~~i~~~~~~   47 (139)
T d1husa_           8 IYNSKLVTRLINKIMID----GKKSKAQKILYTAFDIIRERTGK   47 (139)
T ss_dssp             TTCCHHHHHHHHHHCCT----TCHHHHHHHHHHHHHHHHHHHCS
T ss_pred             ccCCHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHhcCC
Confidence            44689999999999999    99999999999999999999975