Psyllid ID: psy10068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGKASPPEPNNNNDDEFQDGVLNLKKKSAQEFTIENIISREKHARRYENETAPSPSCEDTESEEETARRGS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccEEEEEEEEHHccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQkqneldnnvnslgyqyevedlsmkstsgkasppepnnnnddefQDGVLNLKKKSAQEFTIENIISREKHArryenetapspscedteseeetarrgs
Flexible Loop (DISEMBL)
MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRhkeqkqneldnnvnSLGYQYEVEDLSMKSTSGKASPPEPNNNNDDEFQDGVLNLKkksaqeftieniisrekharryenetapspscedteseeetarrgs
Low Complexity Region (SEG)
MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGKASppepnnnnddeFQDGVLNLKKKSAQEFTIENIISREKHARRYENETAPSPSCEDTESEEETARRGS
Disordered region (IsUnstruct)
*******NEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDY*******************************************************************************************************************
Disordered Region (DISOPRED)
*DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKL**********************LGYQYEVE******************************************************************************
Disordered Region (DISEMBL)
MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDL***************NNNDDEFQDGVLNLKKKSAQEFTIENIISREKHAR**************************
Disordered Region (DISPRO)
MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMK****KASPPEPNNNNDDEFQDGVLNLKKKSAQEFTIENIISREKHARRYENE*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGKASPPEPNNNNDDEFQDGVLNLKKKSAQEFTIENIISREKHARRYENETAPSPSCEDTESEEETARRGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
D4A208	1071	SLIT-ROBO Rho GTPase-acti	yes	N/A	0.452	0.066	0.408	3e-10
O75044	1071	SLIT-ROBO Rho GTPase-acti	yes	N/A	0.452	0.066	0.408	3e-10
Q91Z67	1071	SLIT-ROBO Rho GTPase-acti	yes	N/A	0.452	0.066	0.408	4e-10
P0DJJ0	459	SLIT-ROBO Rho GTPase-acti	no	N/A	0.458	0.156	0.402	4e-10
B0S6J3	1100	SLIT-ROBO Rho GTPase-acti	yes	N/A	0.312	0.044	0.551	1e-09
P98171	946	Rho GTPase-activating pro	no	N/A	0.312	0.051	0.530	2e-08
Q812A2	1099	SLIT-ROBO Rho GTPase-acti	no	N/A	0.312	0.044	0.489	9e-08
O43295	1099	SLIT-ROBO Rho GTPase-acti	no	N/A	0.312	0.044	0.489	9e-08
Q7Z6B7	1085	SLIT-ROBO Rho GTPase-acti	no	N/A	0.401	0.058	0.396	3e-07
Q91Z69	1062	SLIT-ROBO Rho GTPase-acti	no	N/A	0.401	0.059	0.396	3e-07

>sp|D4A208|SRGP2_RAT SLIT-ROBO Rho GTPase-activating protein 2 OS=Rattus norvegicus GN=Srgap2 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 48/71 (67%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA     + +  K
Sbjct: 23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query: 62 QNELDNNVNSL 72
            +   + N L
Sbjct: 83 DQQFKKDQNVL 93

RAC1 GTPase activating protein (GAP) that binds and deforms membranes, and regulates actin dynamics to regulate cell migration and differentiation. Plays an important role in different aspects of neuronal morphogenesis and migration mainly during development of the cerebral cortex. This includes the biogenesis of neurites, where it is required for both axons and dendrites outgrowth, and the maturation of the dendritic spines. Also stimulates the branching of the leading process and negatively regulates neuron radial migration in the cerebral cortex. May play a role for cognition, learning and memory. In non-neuronal cells, it may also play a role in cell migration by regulating the formation of lamellipodia and filopodia.
Rattus norvegicus (taxid: 10116)

>sp|O75044|SRGP2_HUMAN SLIT-ROBO Rho GTPase-activating protein 2 OS=Homo sapiens GN=SRGAP2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 48/71 (67%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA     + +  K
Sbjct: 23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query: 62 QNELDNNVNSL 72
            +   + N L
Sbjct: 83 DQQFKKDQNVL 93

Putative GTPase-activating protein for Rho family small GTPases.

Homo sapiens (taxid: 9606)

>sp|Q91Z67|SRGP2_MOUSE SLIT-ROBO Rho GTPase-activating protein 2 OS=Mus musculus GN=Srgap2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 48/71 (67%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA     + +  K
Sbjct: 23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query: 62 QNELDNNVNSL 72
            +   + N L
Sbjct: 83 DQQFKKDQNVL 93

Putative GTPase-activating protein for Rho family small GTPases.

Mus musculus (taxid: 10090)

>sp|P0DJJ0|SRG2C_HUMAN SLIT-ROBO Rho GTPase-activating protein 2C OS=Homo sapiens GN=SRGAP2C PE=1 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 48/72 (66%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA     + +  K
Sbjct: 23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAEHFLAKTRSTK 82

Query: 62 QNELDNNVNSLG 73
            +   + N L 
Sbjct: 83 DQQFKKDQNVLS 94

Involved in dendritic spine maturation through interaction with and inhibition of SRGAP2. Reduces the rate of spine maturation and indirectly increases neuronal migration. Changes dendritic spine morphology and density and may have implications for cognition, learning and memory.

Homo sapiens (taxid: 9606)

>sp|B0S6J3|SRGP2_DANRE SLIT-ROBO Rho GTPase-activating protein 2 OS=Danio rerio GN=srgap2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 41/49 (83%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA 50
          +IR QL EQL+CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA
Sbjct: 23 EIRAQLVEQLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLA 71

RAC1 GTPase activating protein (GAP) that binds and deforms membranes, and regulates actin dynamics to regulate cell migration and differentiation. May play a role in different aspects of neuronal morphogenesis and migration. This includes the biogenesis of neurites, where it could be required for both axons and dendrites outgrowth, and the maturation of the dendritic spines. May also stimulate the branching of the leading process and negatively regulates neuron migration. In non-neuronal cells, it may also play a role in cell migration by regulating the formation of lamellipodia and filopodia.

Danio rerio (taxid: 7955)

>sp|P98171|RHG04_HUMAN Rho GTPase-activating protein 4 OS=Homo sapiens GN=ARHGAP4 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 40/49 (81%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA 50
          ++R QL+EQLRCL+L+ E +  ++ EL ++ R+RAEVEL+YS+ L+KLA
Sbjct: 23 EMRWQLSEQLRCLELQGELRRELLQELAEFMRRRAEVELEYSRGLEKLA 71

Inhibitory effect on stress fiber organization. May down-regulate Rho-like GTPase in hematopoietic cells.

Homo sapiens (taxid: 9606)

>sp|Q812A2|SRGP3_MOUSE SLIT-ROBO Rho GTPase-activating protein 3 OS=Mus musculus GN=Srgap3 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 41/49 (83%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA 50
          +IR QL EQ +CL+ + E++  ++ +LQ++FR++AE+EL+YS+SL+KLA
Sbjct: 23 EIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLA 71

GTPase-activating protein for RAC1 and perhaps CDC42, but not for RhoA small GTPase. May attenuate RAC1 signaling in neurons.

Mus musculus (taxid: 10090)

>sp|O43295|SRGP3_HUMAN SLIT-ROBO Rho GTPase-activating protein 3 OS=Homo sapiens GN=SRGAP3 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 41/49 (83%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA 50
          +IR QL EQ +CL+ + E++  ++ +LQ++FR++AE+EL+YS+SL+KLA
Sbjct: 23 EIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLA 71

GTPase-activating protein for RAC1 and perhaps Cdc42, but not for RhoA small GTPase. May attenuate RAC1 signaling in neurons.

Homo sapiens (taxid: 9606)

>sp|Q7Z6B7|SRGP1_HUMAN SLIT-ROBO Rho GTPase-activating protein 1 OS=Homo sapiens GN=SRGAP1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 44/63 (69%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          +IR QL EQ +CL+ + E +  ++ +LQD+FRK+AE+E +YS++L+KLA     + +  K
Sbjct: 23 EIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTK 82

Query: 62 QNE 64
           ++
Sbjct: 83 DHQ 85

GTPase-activating protein for RhoA and Cdc42 small GTPases. Together with CDC42 seems to be involved in the pathway mediating the repulsive signaling of Robo and Slit proteins in neuronal migration. SLIT2, probably through interaction with ROBO1, increases the interaction of SRGAP1 with ROBO1 and inactivates CDC42.

Homo sapiens (taxid: 9606)

>sp|Q91Z69|SRGP1_MOUSE SLIT-ROBO Rho GTPase-activating protein 1 OS=Mus musculus GN=Srgap1 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 44/63 (69%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          +IR QL EQ +CL+ + E +  ++ +LQD+FRK+AE+E +YS++L+KLA     + +  K
Sbjct: 23 EIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTK 82

Query: 62 QNE 64
           ++
Sbjct: 83 DHQ 85

GTPase-activating protein for RhoA and Cdc42 small GTPases. Together with CDC42 seems to be involved in the pathway mediating the repulsive signaling of Robo and Slit proteins in neuronal migration. SLIT2, probably through interaction with ROBO1, increases the interaction of SRGAP1 with ROBO1 and inactivates CDC42.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
340718395	1208	PREDICTED: SLIT-ROBO Rho GTPase-activati	0.388	0.050	0.836	2e-23
350401980	1208	PREDICTED: SLIT-ROBO Rho GTPase-activati	0.388	0.050	0.836	2e-23
380016987	1218	PREDICTED: LOW QUALITY PROTEIN: SLIT-ROB	0.388	0.050	0.836	3e-23
307200505	1301	SLIT-ROBO Rho GTPase-activating protein	0.388	0.046	0.836	3e-23
383853764	1212	PREDICTED: SLIT-ROBO Rho GTPase-activati	0.388	0.050	0.819	6e-23
242008184	871	SLIT-ROBO Rho GTPase-activating protein,	0.388	0.070	0.836	3e-22
270014965	1107	hypothetical protein TcasGA2_TC013589 [T	0.388	0.055	0.803	1e-21
189233754	779	PREDICTED: similar to AGAP004772-PA [Tri	0.388	0.078	0.803	2e-21
328704597	1128	PREDICTED: SLIT-ROBO Rho GTPase-activati	0.388	0.054	0.803	3e-21
345495357	1266	PREDICTED: SLIT-ROBO Rho GTPase-activati	0.388	0.048	0.754	3e-21

>gi|340718395|ref|XP_003397653.1| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1-like isoform 1 [Bombus terrestris] gi|340718397|ref|XP_003397654.1| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1-like isoform 2 [Bombus terrestris]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          DIRLQLNEQLRCLD+RME Q A++ ELQD+FR+RAE+ELDYSKSLDKLARS+QLRHKEQK
Sbjct: 16 DIRLQLNEQLRCLDIRMEAQVAIVAELQDFFRRRAELELDYSKSLDKLARSIQLRHKEQK 75

Query: 62 Q 62
          Q
Sbjct: 76 Q 76

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401980|ref|XP_003486324.1| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1-like isoform 1 [Bombus impatiens] gi|350401982|ref|XP_003486325.1| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1-like isoform 2 [Bombus impatiens]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          DIRLQLNEQLRCLD+RME Q A++ ELQD+FR+RAE+ELDYSKSLDKLARS+QLRHKEQK
Sbjct: 16 DIRLQLNEQLRCLDIRMEAQVAIVAELQDFFRRRAELELDYSKSLDKLARSIQLRHKEQK 75

Query: 62 Q 62
          Q
Sbjct: 76 Q 76

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016987|ref|XP_003692448.1| PREDICTED: LOW QUALITY PROTEIN: SLIT-ROBO Rho GTPase-activating protein 1-like [Apis florea]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          +IRLQLNEQLRCLD+RME Q A++ ELQD+FRKRAE+ELDYSKSLDKLARS+QLRHKEQK
Sbjct: 27 NIRLQLNEQLRCLDIRMEAQVAIVAELQDFFRKRAELELDYSKSLDKLARSIQLRHKEQK 86

Query: 62 Q 62
          Q
Sbjct: 87 Q 87

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200505|gb|EFN80667.1| SLIT-ROBO Rho GTPase-activating protein 1 [Harpegnathos saltator]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          DIRLQLNEQLRCLD+RME Q A++ ELQD+FRKRAE+ELDYSKSLDK+ARS+QLRHKEQK
Sbjct: 39 DIRLQLNEQLRCLDVRMEAQVALVAELQDFFRKRAELELDYSKSLDKMARSIQLRHKEQK 98

Query: 62 Q 62
          Q
Sbjct: 99 Q 99

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853764|ref|XP_003702392.1| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1 [Megachile rotundata]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 58/61 (95%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          DIRLQLNEQLRCLD+RME Q A++ ELQD+FR+RAE+ELDYSKSLDK+ARS+QLRHKEQK
Sbjct: 16 DIRLQLNEQLRCLDIRMEAQVALVAELQDFFRRRAELELDYSKSLDKMARSIQLRHKEQK 75

Query: 62 Q 62
          Q
Sbjct: 76 Q 76

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008184|ref|XP_002424891.1| SLIT-ROBO Rho GTPase-activating protein, putative [Pediculus humanus corporis] gi|212508464|gb|EEB12153.1| SLIT-ROBO Rho GTPase-activating protein, putative [Pediculus humanus corporis]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          DIRLQL+EQLRCLD+RME Q A++ ELQDYFRKRAE+ELDYSK+LDKLA+SLQLRHKEQK
Sbjct: 15 DIRLQLSEQLRCLDVRMEAQVALVAELQDYFRKRAELELDYSKNLDKLAKSLQLRHKEQK 74

Query: 62 Q 62
          Q
Sbjct: 75 Q 75

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014965|gb|EFA11413.1| hypothetical protein TcasGA2_TC013589 [Tribolium castaneum]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 57/61 (93%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          DIRLQLNEQLRCLD+RME Q A++ ELQD+FR+R E+ELDYSK+LDKLA+SLQLRHKEQK
Sbjct: 18 DIRLQLNEQLRCLDMRMEAQVALVTELQDFFRRRGELELDYSKNLDKLAKSLQLRHKEQK 77

Query: 62 Q 62
          Q
Sbjct: 78 Q 78

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233754|ref|XP_972272.2| PREDICTED: similar to AGAP004772-PA [Tribolium castaneum]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 57/61 (93%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          DIRLQLNEQLRCLD+RME Q A++ ELQD+FR+R E+ELDYSK+LDKLA+SLQLRHKEQK
Sbjct: 26 DIRLQLNEQLRCLDMRMEAQVALVTELQDFFRRRGELELDYSKNLDKLAKSLQLRHKEQK 85

Query: 62 Q 62
          Q
Sbjct: 86 Q 86

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704597|ref|XP_001945442.2| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1-like [Acyrthosiphon pisum]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          DIRLQLNE LRCLD R+E Q +++ ELQDYFR+RAEVE+DYSKSLDKLA+SLQLRHKEQK
Sbjct: 24 DIRLQLNEHLRCLDSRVEAQVSLVSELQDYFRRRAEVEMDYSKSLDKLAKSLQLRHKEQK 83

Query: 62 Q 62
          Q
Sbjct: 84 Q 84

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495357|ref|XP_001607307.2| PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1-like [Nasonia vitripennis]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 58/61 (95%)

Query: 2  DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQK 61
          +IRLQLNEQLRCLD+RME Q A++ ELQD+FR+RAE+ELDYSKSLDK+A+S+Q+RHKEQ+
Sbjct: 27 NIRLQLNEQLRCLDVRMEAQVALVAELQDFFRRRAELELDYSKSLDKMAKSIQMRHKEQR 86

Query: 62 Q 62
          Q
Sbjct: 87 Q 87

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
UNIPROTKB|P0DJJ0	459	SRGAP2C "SLIT-ROBO Rho GTPase-	0.445	0.152	0.444	3.6e-11
UNIPROTKB|F1SF00	944	SRGAP2 "Uncharacterized protei	0.445	0.074	0.472	8.5e-11
UNIPROTKB|F1PUX3	1071	SRGAP2 "Uncharacterized protei	0.445	0.065	0.472	1e-10
UNIPROTKB|O75044	1071	SRGAP2 "SLIT-ROBO Rho GTPase-a	0.445	0.065	0.472	1e-10
MGI|MGI:109605	1071	Srgap2 "SLIT-ROBO Rho GTPase a	0.445	0.065	0.472	1e-10
RGD|1566016	1071	Srgap2 "SLIT-ROBO Rho GTPase a	0.445	0.065	0.472	1e-10
UNIPROTKB|D4A208	1071	Srgap2 "SLIT-ROBO Rho GTPase-a	0.445	0.065	0.472	1e-10
UNIPROTKB|E1BZR0	953	SRGAP2 "Uncharacterized protei	0.445	0.073	0.486	1.1e-10
UNIPROTKB|G3N2T3	951	ARHGAP4 "Uncharacterized prote	0.305	0.050	0.541	1.9e-10
ZFIN|ZDB-GENE-060915-2	1100	srgap2a "SLIT-ROBO Rho GTPase	0.445	0.063	0.458	3.5e-10

UNIPROTKB|P0DJJ0 SRGAP2C "SLIT-ROBO Rho GTPase-activating protein 2C" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 32/72 (44%), Positives = 51/72 (70%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSL--QLRHKE 59
             +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA     + R  +
Sbjct:    23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAEHFLAKTRSTK 82

Query:    60 QKQNELDNNVNS 71
              +Q + D NV S
Sbjct:    83 DQQFKKDQNVLS 94

GO:0021816 "extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration" evidence=IDA

GO:0061000 "negative regulation of dendritic spine development" evidence=IDA

GO:0051490 "negative regulation of filopodium assembly" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:2001224 "positive regulation of neuron migration" evidence=IDA

UNIPROTKB|F1SF00 SRGAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 163 (62.4 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA-RSL-QLRHKE 59
             +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA R L + R  +
Sbjct:    23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query:    60 QKQNELDNNVNS 71
              +Q + D NV S
Sbjct:    83 DQQFKKDQNVLS 94

GO:0060996 "dendritic spine development" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IEA

GO:0048365 "Rac GTPase binding" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0021816 "extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PUX3 SRGAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA-RSL-QLRHKE 59
             +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA R L + R  +
Sbjct:    23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query:    60 QKQNELDNNVNS 71
              +Q + D NV S
Sbjct:    83 DQQFKKDQNVLS 94

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|O75044 SRGAP2 "SLIT-ROBO Rho GTPase-activating protein 2" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA-RSL-QLRHKE 59
             +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA R L + R  +
Sbjct:    23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query:    60 QKQNELDNNVNS 71
              +Q + D NV S
Sbjct:    83 DQQFKKDQNVLS 94

GO:0030054 "cell junction" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0021816 "extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=ISS

GO:0014069 "postsynaptic density" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0030675 "Rac GTPase activator activity" evidence=IDA;IMP

GO:0032855 "positive regulation of Rac GTPase activity" evidence=IDA;IMP

GO:0048365 "Rac GTPase binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0044327 "dendritic spine head" evidence=IDA

GO:0060996 "dendritic spine development" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=ISS

GO:0046847 "filopodium assembly" evidence=IDA

GO:2001223 "negative regulation of neuron migration" evidence=IDA

GO:0051014 "actin filament severing" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0008283 "cell proliferation" evidence=IMP

GO:0003363 "lamellipodium assembly involved in ameboidal cell migration" evidence=IMP

GO:0030027 "lamellipodium" evidence=IDA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

MGI|MGI:109605 Srgap2 "SLIT-ROBO Rho GTPase activating protein 2" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA-RSL-QLRHKE 59
             +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA R L + R  +
Sbjct:    23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query:    60 QKQNELDNNVNS 71
              +Q + D NV S
Sbjct:    83 DQQFKKDQNVLS 94

GO:0003363 "lamellipodium assembly involved in ameboidal cell migration" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0021816 "extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration" evidence=IMP

GO:0030027 "lamellipodium" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=ISO;IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032855 "positive regulation of Rac GTPase activity" evidence=ISO;IDA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO;IDA

GO:0042995 "cell projection" evidence=IEA

GO:0044327 "dendritic spine head" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0046847 "filopodium assembly" evidence=ISO;IDA

GO:0048365 "Rac GTPase binding" evidence=ISO;IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0051014 "actin filament severing" evidence=ISO

GO:0060996 "dendritic spine development" evidence=ISO;IMP

GO:2001223 "negative regulation of neuron migration" evidence=ISO

RGD|1566016 Srgap2 "SLIT-ROBO Rho GTPase activating protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA-RSL-QLRHKE 59
             +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA R L + R  +
Sbjct:    23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query:    60 QKQNELDNNVNS 71
              +Q + D NV S
Sbjct:    83 DQQFKKDQNVLS 94

GO:0003363 "lamellipodium assembly involved in ameboidal cell migration" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO;ISS

GO:0021816 "extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration" evidence=ISO;ISS

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=ISO;ISS

GO:0032855 "positive regulation of Rac GTPase activity" evidence=ISO;ISS

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0044327 "dendritic spine head" evidence=ISO;ISS

GO:0045211 "postsynaptic membrane" evidence=ISO;ISS

GO:0045335 "phagocytic vesicle" evidence=ISO;ISS

GO:0046847 "filopodium assembly" evidence=ISO;ISS

GO:0048365 "Rac GTPase binding" evidence=ISO;ISS

GO:0048812 "neuron projection morphogenesis" evidence=ISO;ISS

GO:0051014 "actin filament severing" evidence=ISO;ISS

GO:0060996 "dendritic spine development" evidence=ISO;ISS

GO:2001223 "negative regulation of neuron migration" evidence=ISO;ISS

GO:0008283 "cell proliferation" evidence=ISO

GO:0060548 "negative regulation of cell death" evidence=ISO

UNIPROTKB|D4A208 Srgap2 "SLIT-ROBO Rho GTPase-activating protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 34/72 (47%), Positives = 53/72 (73%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA-RSL-QLRHKE 59
             +IR QL EQ++CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA R L + R  +
Sbjct:    23 EIRAQLTEQMKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query:    60 QKQNELDNNVNS 71
              +Q + D NV S
Sbjct:    83 DQQFKKDQNVLS 94

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1BZR0 SRGAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 35/72 (48%), Positives = 53/72 (73%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA-RSL-QLRHKE 59
             +IR QL EQL+CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA R L + R  +
Sbjct:    23 EIRAQLVEQLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTK 82

Query:    60 QKQNELDNNVNS 71
              +Q + D NV S
Sbjct:    83 DQQFKKDQNVLS 94

GO:0007165 "signal transduction" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0021816 "extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA

GO:0048365 "Rac GTPase binding" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IEA

GO:0060996 "dendritic spine development" evidence=IEA

UNIPROTKB|G3N2T3 ARHGAP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 26/48 (54%), Positives = 38/48 (79%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKL 49
             ++R QL EQLRCL+L+ E +  ++ EL ++ R+RAEVEL+YS+ LDKL
Sbjct:    23 EMRWQLGEQLRCLELQGELRRELLQELAEFMRRRAEVELEYSRGLDKL 70

GO:0005925 "focal adhesion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-060915-2 srgap2a "SLIT-ROBO Rho GTPase activating protein 2a" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 33/72 (45%), Positives = 53/72 (73%)

Query:     2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLA-RSL-QLRHKE 59
             +IR QL EQL+CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA R L + R+ +
Sbjct:    23 EIRAQLVEQLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRYTK 82

Query:    60 QKQNELDNNVNS 71
               Q + + N+ S
Sbjct:    83 DPQFKKEQNILS 94

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0044327 "dendritic spine head" evidence=ISS

GO:0030675 "Rac GTPase activator activity" evidence=ISS

GO:0032855 "positive regulation of Rac GTPase activity" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=ISS

GO:0014069 "postsynaptic density" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=IEA;ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0046847 "filopodium assembly" evidence=ISS

GO:0060996 "dendritic spine development" evidence=ISS

GO:0048365 "Rac GTPase binding" evidence=ISS

GO:2001223 "negative regulation of neuron migration" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0051014 "actin filament severing" evidence=ISS

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	157
cd07656	241	cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology	2e-20
cd07682	263	cd07682, F-BAR_srGAP2, The F-BAR (FES-CIP4 Homolog	4e-09
cd07684	253	cd07684, F-BAR_srGAP3, The F-BAR (FES-CIP4 Homolog	3e-07
cd07683	253	cd07683, F-BAR_srGAP1, The F-BAR (FES-CIP4 Homolog	2e-06
pfam00611	91	pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology d	5e-06

>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 35/66 (53%), Positives = 49/66 (74%)

Query: 6  QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
          QL+EQL+CLDLR E Q  ++ +LQDYFR+RAE+EL+YS+SL+KLA     +HK +K    
Sbjct: 2  QLSEQLKCLDLRTEAQVQLLADLQDYFRRRAEIELEYSRSLEKLADRFSSKHKNEKSKRE 61

Query: 66 DNNVNS 71
          D ++ S
Sbjct: 62 DWSLLS 67

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. Length = 241

>gnl|CDD|153366 cd07682, F-BAR_srGAP2, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2

 Score = 53.2 bits (127), Expect = 4e-09
 Identities = 28/67 (41%), Positives = 45/67 (67%)

Query: 6  QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
          QL EQL+CLD + E +  ++ +LQD+FRK+AE+E+DYS++L+KLA     + +  K  + 
Sbjct: 2  QLVEQLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQF 61

Query: 66 DNNVNSL 72
            + N L
Sbjct: 62 KKDQNVL 68

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. Length = 263

>gnl|CDD|153368 cd07684, F-BAR_srGAP3, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 28/97 (28%), Positives = 59/97 (60%), Gaps = 3/97 (3%)

Query: 6  QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
          QL EQ +CL+ + E++  ++ +LQ++FR++AE+EL+YS+SL+KLA     + +  ++++ 
Sbjct: 2  QLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRTSREHQF 61

Query: 66 ---DNNVNSLGYQYEVEDLSMKSTSGKASPPEPNNNN 99
                ++ +   Y V + + + +   A+  +  NNN
Sbjct: 62 KKDQQLLSPVNCWYLVLEQTRRESRDHATLNDIFNNN 98

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. Length = 253

>gnl|CDD|153367 cd07683, F-BAR_srGAP1, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 23/59 (38%), Positives = 41/59 (69%)

Query: 6  QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
          QL EQ +CL+ + E +  ++ +LQD+FRK+AE+E +YS++L+KLA     + +  K ++
Sbjct: 2  QLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQ 60

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. Length = 253

>gnl|CDD|216021 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domain

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 1  MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHK 58
               +L++  + L  R++    ++ EL  + R+RAE+E +Y+K L KLA+    + +
Sbjct: 1  DSFWSELDDGFKVLLKRLKQGIKLLEELAKFLRERAEIEKEYAKKLRKLAKKYLKKKE 58

Alignment extended from. Highly alpha-helical. The cytosolic endocytic adaptor proteins in fungi carry this domain at the N-terminus; several of these have been referred to as muniscin proteins. These N-terminal BAR, N-BAR, and EFC/F-BAR domains are found in proteins that regulate membrane trafficking events by inducing membrane tubulation. The domain dimerises into a curved structure that binds to liposomes and either senses or induces the curvature of the membrane bilayer to cause biophysical changes to the shape of the bilayer; it also thereby recruits other trafficking factors, such as the GTPase dynamin. Most EFC/F-BAR domain-family members localise to actin-rich structures. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
cd07682	263	F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/	99.94
cd07684	253	F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/	99.94
cd07683	253	F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/	99.93
cd07656	241	F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/A	99.84
cd07654	264	F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/A	99.63
cd07678	263	F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/	99.52
PF00611	91	FCH: Fes/CIP4, and EFC/F-BAR homology domain; Inte	99.3
cd07677	260	F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/	99.25
smart00055	87	FCH Fes/CIP4 homology domain. Alignment extended f	99.21
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	99.16
cd07610	191	FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or	99.03
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	98.97
cd07686	234	F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp	98.6
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	98.51
cd07652	234	F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Am	98.32
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	98.27
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	98.25
cd07648	261	F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am	98.23
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	98.18
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	98.03
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	98.01
cd07680	258	F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin	97.9
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	97.61
cd07674	261	F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A	97.54
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	97.47
cd07673	269	F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A	97.41
cd07650	228	F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and	97.28
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	97.23
cd07681	258	F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin	97.04
cd07679	258	F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin	96.87
KOG3565|consensus	640		93.82
cd07685	237	F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amp	91.15
KOG2398|consensus	611		89.15
KOG2856|consensus	472		82.74

>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2

Probab=99.94  E-value=2.8e-27  Score=200.26  Aligned_cols=88  Identities=32%  Similarity=0.533  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCCcchhHHHHHhh
Q psy10068          5 LQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHK---EQKQNELDNNVNSLGYQYEVEDL   81 (157)
Q Consensus         5 ~QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K---~~k~krdqw~lss~~~W~~lL~~   81 (157)
                      +||+|||||||+|+|.++++|+||+|||||||+||.|||++|+|||++|..|+.   ....++++|.+++++||+.||++
T Consensus         1 ~ql~eQlkcld~q~e~~i~lLqDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~Q   80 (263)
T cd07682           1 AQLVEQLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQ   80 (263)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCccCHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999999985   34568999999999999999999


Q ss_pred             hhhhccCcCCC
Q psy10068         82 SMKSTSGKASP   92 (157)
Q Consensus        82 t~~~~~g~asp   92 (157)
                      |+..+..|++-
T Consensus        81 T~~~Skdh~~L   91 (263)
T cd07682          81 VKRESRDHATL   91 (263)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3

Probab=99.94  E-value=5.8e-27  Score=197.34  Aligned_cols=88  Identities=28%  Similarity=0.526  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---hhhhccCCCCcchhHHHHHhh
Q psy10068          5 LQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ---KQNELDNNVNSLGYQYEVEDL   81 (157)
Q Consensus         5 ~QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~---k~krdqw~lss~~~W~~lL~~   81 (157)
                      .||+|||||||+|+|.++++|+||+||||||||||.|||++|+|||++|..|++..   ..+++++.+++++||+.||++
T Consensus         1 ~ql~eQlkcld~~~e~~i~~LqDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~Q   80 (253)
T cd07684           1 TQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRTSREHQFKKDQQLLSPVNCWYLVLEQ   80 (253)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCccCHHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999999999999997543   357888888888999999999


Q ss_pred             hhhhccCcCCC
Q psy10068         82 SMKSTSGKASP   92 (157)
Q Consensus        82 t~~~~~g~asp   92 (157)
                      |+..+..|++-
T Consensus        81 T~~iskdh~~L   91 (253)
T cd07684          81 TRRESRDHATL   91 (253)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit

>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1

Probab=99.93  E-value=1.5e-26  Score=194.81  Aligned_cols=89  Identities=28%  Similarity=0.509  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---Hh-hhhhccCCCCcchhHHHHHh
Q psy10068          5 LQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHK---EQ-KQNELDNNVNSLGYQYEVED   80 (157)
Q Consensus         5 ~QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K---~~-k~krdqw~lss~~~W~~lL~   80 (157)
                      .||+|||||||+|+|.++++|+||+|||||||+||.|||++|+|||++|..|++   .+ ..++++|..++++||+.||+
T Consensus         1 ~ql~eQlkcld~~~e~~~~lLqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~~~S~~~~W~~lL~   80 (253)
T cd07683           1 AQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLN   80 (253)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcchhhHHHHHHHHHH
Confidence            499999999999999999999999999999999999999999999999999984   22 35788888899999999999


Q ss_pred             hhhhhccCcCCCC
Q psy10068         81 LSMKSTSGKASPP   93 (157)
Q Consensus        81 ~t~~~~~g~asp~   93 (157)
                      +|+..+..|++-.
T Consensus        81 qT~~~sk~h~~LS   93 (253)
T cd07683          81 QVRRESKDHATLS   93 (253)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha

>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins

Probab=99.84  E-value=2.4e-21  Score=158.36  Aligned_cols=88  Identities=39%  Similarity=0.636  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCC-CCcchhHHHHHhhhh
Q psy10068          5 LQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNN-VNSLGYQYEVEDLSM   83 (157)
Q Consensus         5 ~QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~-lss~~~W~~lL~~t~   83 (157)
                      +||.||++|||.++|..+.+|+||++|||+||+||.|||+.|+|||++|..|++..+.+.+.|+ .++..||+.||++|.
T Consensus         1 ~qL~dQ~~~L~~~te~~i~lLed~~~F~r~RaeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~   80 (241)
T cd07656           1 QQLSEQLKCLDLRTEAQVQLLADLQDYFRRRAEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTK   80 (241)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999988777777887 555589999999999


Q ss_pred             hhccCcCCC
Q psy10068         84 KSTSGKASP   92 (157)
Q Consensus        84 ~~~~g~asp   92 (157)
                      ..+.-|..-
T Consensus        81 ~~a~~h~~l   89 (241)
T cd07656          81 QESRDHSTL   89 (241)
T ss_pred             HHHHHHHHH
Confidence            877766543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD)

Probab=99.63  E-value=3.2e-16  Score=130.37  Aligned_cols=84  Identities=18%  Similarity=0.213  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hhhhccCCCCcchhHHHHHhhhhhh
Q psy10068          7 LNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ-KQNELDNNVNSLGYQYEVEDLSMKS   85 (157)
Q Consensus         7 L~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~-k~krdqw~lss~~~W~~lL~~t~~~   85 (157)
                      .+||++||+.+++..+.+|+||++|||+||+||.|||+.|.|||++|..|.... ....+....+++.||+.+|+++...
T Consensus         3 ~~Eq~~~L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakky~~Kk~~~~~~~~~~~~~s~~~~W~~~L~qt~~~   82 (264)
T cd07654           3 HLEQLSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLKREWPGSGELKPEDDRSGYTVWGAWLEGLDAV   82 (264)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccchHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999886422 2233344467789999999999866


Q ss_pred             ccCcC
Q psy10068         86 TSGKA   90 (157)
Q Consensus        86 ~~g~a   90 (157)
                      +..|.
T Consensus        83 A~~~~   87 (264)
T cd07654          83 AQSRQ   87 (264)
T ss_pred             HHHHH
Confidence            65554

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1)

Probab=99.52  E-value=2.3e-14  Score=120.46  Aligned_cols=79  Identities=19%  Similarity=0.292  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----hhhhhccCCCCcchhHHHHHhh
Q psy10068          6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKE----QKQNELDNNVNSLGYQYEVEDL   81 (157)
Q Consensus         6 QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~----~k~krdqw~lss~~~W~~lL~~   81 (157)
                      .++||++||+.+++..+.+|+||++|+|+|++||.|||+.|.||+++|..|.+.    ... +..+..++.+||+.+.++
T Consensus         2 ~~~eQ~~~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~-~~~~~~s~~~~~~e~~~~   80 (263)
T cd07678           2 RFLEQLSILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNETE-MDRSVRTVWGAWREGTAA   80 (263)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhhh-hccccchHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999988742    111 334445555899999999


Q ss_pred             hhhh
Q psy10068         82 SMKS   85 (157)
Q Consensus        82 t~~~   85 (157)
                      +...
T Consensus        81 a~Q~   84 (263)
T cd07678          81 TGQG   84 (263)
T ss_pred             HHHH
Confidence            8755

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []

Probab=99.30  E-value=3.1e-12  Score=85.68  Aligned_cols=79  Identities=22%  Similarity=0.303  Sum_probs=65.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhh
Q psy10068          3 IRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLS   82 (157)
Q Consensus         3 IR~QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t   82 (157)
                      +..++.+++.+|..+.+..+.++.+|.+||++|++||.+||++|.||+.++..+.+.....     .+...+|..|++++
T Consensus         3 F~~~~~~g~~~l~~~~~~~~~~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~~-----~t~~~~~~~~~~~~   77 (91)
T PF00611_consen    3 FWSDLWDGFEVLFKRLKQGIKLLEELASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQEY-----GTLKNAWDSLLEET   77 (91)
T ss_dssp             TTSTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCc-----cHHHHHHHHHHHHH
Confidence            4556788999999999999999999999999999999999999999999999887622111     33357999999887


Q ss_pred             hhhc
Q psy10068         83 MKST   86 (157)
Q Consensus        83 ~~~~   86 (157)
                      ...+
T Consensus        78 ~~~a   81 (91)
T PF00611_consen   78 EQIA   81 (91)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....

>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2)

Probab=99.25  E-value=8.5e-12  Score=105.69  Aligned_cols=70  Identities=10%  Similarity=0.017  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-h-hhhccCC----------CCcchhHHHHHhhhhhhc
Q psy10068         19 ETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ-K-QNELDNN----------VNSLGYQYEVEDLSMKST   86 (157)
Q Consensus        19 E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~-k-~krdqw~----------lss~~~W~~lL~~t~~~~   86 (157)
                      ..+.++|+||++|+|+|++||.|||++|+|||++|..|.... . .-.-+||          .++..||+.||++|...+
T Consensus         4 ~~e~~~LqDiqqFyreRs~IEkEYS~kL~kL~kky~~Kk~k~ss~lsvgd~p~~tpgsle~~~S~~~~W~~~L~~Te~~A   83 (260)
T cd07677           4 VEQMTKLQAKHQAECKLLEDEREFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADERADYRSMYTVWKSFLEGTMQVA   83 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCccCCCCcchhhhhHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999996431 1 1222354          244589999999999776


Q ss_pred             cC
Q psy10068         87 SG   88 (157)
Q Consensus        87 ~g   88 (157)
                      ..
T Consensus        84 ~~   85 (260)
T cd07677          84 QS   85 (260)
T ss_pred             HH
Confidence            65

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>smart00055 FCH Fes/CIP4 homology domain

Probab=99.21  E-value=5.7e-11  Score=80.41  Aligned_cols=76  Identities=21%  Similarity=0.361  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-hhHHHHHhhhhh
Q psy10068          6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSL-GYQYEVEDLSMK   84 (157)
Q Consensus         6 QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~-~~W~~lL~~t~~   84 (157)
                      ++..++++|-.+++.-..++.||.+||++||+||.|||+.|.|||.....      .....-...++ .+|..+++++..
T Consensus         6 ~~~~g~~~L~~~~~~~~~~~~~~~~f~~~Ra~iE~eYak~L~kL~~~~~~------~~~~~~~~~s~~~aw~~~~~e~~~   79 (87)
T smart00055        6 ELDDGFEALLSRLKNGLRLLEDLKKFIRERAKIEEEYAKKLQKLSKKLRA------VRDTESEYGSLSKSWEVLLSETDA   79 (87)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCCCCcchhHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999998321      11122233455 799999998875


Q ss_pred             hcc
Q psy10068         85 STS   87 (157)
Q Consensus        85 ~~~   87 (157)
                      .+.
T Consensus        80 ~a~   82 (87)
T smart00055       80 LAK   82 (87)
T ss_pred             HHH
Confidence            443

Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=99.16  E-value=6e-11  Score=93.67  Aligned_cols=80  Identities=19%  Similarity=0.273  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhh
Q psy10068          6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKS   85 (157)
Q Consensus         6 QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~   85 (157)
                      .|-||+.+|..+++.-+.++.||.+||++||+||.+||++|.|||..|..+.+.    .++...+...+|..|++++-..
T Consensus         2 ~L~d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~----~~~~~~s~~~aw~~i~~e~~~~   77 (251)
T cd07653           2 ELWDQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKE----EDEYSFSSVKAFRSILNEVNDI   77 (251)
T ss_pred             cchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CccccccHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999876632    2223345568999999887655


Q ss_pred             ccCc
Q psy10068         86 TSGK   89 (157)
Q Consensus        86 ~~g~   89 (157)
                      +..|
T Consensus        78 a~~H   81 (251)
T cd07653          78 AGQH   81 (251)
T ss_pred             HHHH
Confidence            4444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes

Probab=99.03  E-value=5e-10  Score=83.82  Aligned_cols=72  Identities=19%  Similarity=0.341  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         11 LRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        11 LKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      +.+|..+++.-..++.||.+|||+||+||.+||++|.|||..+..+...  +.     -+...+|..|+..+...+.-|
T Consensus         2 ~~~l~~~~~~g~~~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~--~~-----~t~~~~w~~~~~e~~~~a~~h   73 (191)
T cd07610           2 FELLEKRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPES--GK-----TSLGTSWNSLREETESAATVH   73 (191)
T ss_pred             chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--CC-----CcHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999875421  11     234579999998887555443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=98.97  E-value=1.5e-09  Score=88.82  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCc-chhHHHHHhhhhhhcc
Q psy10068         13 CLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNS-LGYQYEVEDLSMKSTS   87 (157)
Q Consensus        13 cLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss-~~~W~~lL~~t~~~~~   87 (157)
                      +|=.+++..+.+|+||+.|||+|++||.|||+.|.+|+..|..+     ...+..+.++ ..+|..+|+++..-+.
T Consensus         9 ~l~~~~~~ei~lLe~i~~F~reRa~iE~EYA~~L~~L~kq~~k~-----~~~~~~~~s~~~~sW~~iL~ete~~A~   79 (237)
T cd07657           9 ALLKRQDAELRLLETMKKYMAKRAKSDREYASTLGSLANQGLKI-----EAGDDLQGSPISKSWKEIMDSTDQLSK   79 (237)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcC-----CCcccCCcChHHHHHHHHHHHHHHHHH
Confidence            56678999999999999999999999999999999999887211     1344444444 5799999999986554

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase

Probab=98.60  E-value=9.5e-08  Score=79.51  Aligned_cols=77  Identities=14%  Similarity=0.247  Sum_probs=56.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-hhHHHHHh
Q psy10068          2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSL-GYQYEVED   80 (157)
Q Consensus         2 EIR~QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~-~~W~~lL~   80 (157)
                      |+|.|. |||-.|.   +..+.+|.|+..|++.||.||.|||..|-+|+..|..+.+..     .-..+++ ..|..|++
T Consensus         2 ~l~~~~-e~l~k~q---~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L~kq~~kk~~~~-----~~~~s~v~~sW~~vl~   72 (234)
T cd07686           2 DLRNSH-EALLKLQ---DWELRLLETVKKFMALRVKSDKEYASTLQNLCNQVDKESTSQ-----LDYVSNVSKSWLHMVQ   72 (234)
T ss_pred             chhhHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc-----ccchhhHHHHHHHHHH
Confidence            456665 6665554   888899999999999999999999999999999983333211     1111222 69999999


Q ss_pred             hhhhhcc
Q psy10068         81 LSMKSTS   87 (157)
Q Consensus        81 ~t~~~~~   87 (157)
                      +|..-+.
T Consensus        73 qte~iA~   79 (234)
T cd07686          73 QTEQLSK   79 (234)
T ss_pred             HHHHHHH
Confidence            9974443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=98.51  E-value=3.6e-07  Score=75.62  Aligned_cols=76  Identities=20%  Similarity=0.297  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhh
Q psy10068          6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSM   83 (157)
Q Consensus         6 QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~   83 (157)
                      .|-+|.+.|...+..-+.++.||..|||.||+||.+||+.|-+||++|..+.+.....-.  ..++...|.++++..-
T Consensus         2 eL~D~~~~l~k~~~~Gi~~~~~i~~f~kERa~IEkeYakkL~~L~kKy~~kk~~~~~~~~--~~t~~~aw~~~l~e~~   77 (253)
T cd07676           2 ELWDQFDNLEKHTQWGIEVLEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEY--KYTSCRAFLMTLNEMN   77 (253)
T ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--cchHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999999999999887642111111  1244568888887654

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins

Probab=98.32  E-value=2.6e-06  Score=69.30  Aligned_cols=70  Identities=21%  Similarity=0.176  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhh
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKS   85 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~   85 (157)
                      ..|-.|+..-...+.|+.+||++|++||.|||++|-|||+.+..+.+..    +.-.-+-...|..++..+-.-
T Consensus         8 ~~Ll~rlK~~~~~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~----~~~~gs~~~a~~~il~~~e~l   77 (234)
T cd07652           8 STLLDRLKQSIASAKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKRP----DHKQGSFSNAYHSSLEFHEKL   77 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----CCCCCcHHHHHHHHHHHHHHH
Confidence            3566777788889999999999999999999999999999998776531    111223336999999876533

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=98.27  E-value=1.7e-06  Score=70.80  Aligned_cols=75  Identities=15%  Similarity=0.090  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCcC
Q psy10068         11 LRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGKA   90 (157)
Q Consensus        11 LKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~a   90 (157)
                      .+.+-.|++.=..++.||.+||+.||+||.+||+.|.|||.++..+...    ... .-+....|..|++.+..-+..|.
T Consensus         7 y~~~~kr~~~G~~~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~~~----~~e-~gsl~~aw~~~~~e~e~~a~~H~   81 (258)
T cd07655           7 YKRTVKRIEDGHKLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEK----GPE-YGTLETAWKGLLSEAERLSELHL   81 (258)
T ss_pred             chhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCC-CChHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999999988765421    110 12333699999999876554443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=98.25  E-value=2.6e-06  Score=71.73  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCcchhHHHHHhhh
Q psy10068          6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELD-NNVNSLGYQYEVEDLS   82 (157)
Q Consensus         6 QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdq-w~lss~~~W~~lL~~t   82 (157)
                      .|-+|.+.+...+..-+.+|.+++.|+|.|+.||.|||+.|-+|++.|.-|-+    +.+. +..++.-.|..+|++-
T Consensus         2 eL~Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~----~~~e~p~~t~~~s~~~~L~~~   75 (252)
T cd07675           2 ELWDQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRS----SKDEEPRFTSCLSFYNILNEL   75 (252)
T ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CCCCCccccHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999998876543    2233 2455555676666653

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins

Probab=98.23  E-value=2.3e-06  Score=68.97  Aligned_cols=68  Identities=25%  Similarity=0.322  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-hhHHHHHhhhhhhccCc
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSL-GYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~-~~W~~lL~~t~~~~~g~   89 (157)
                      ..|-.|+..=..++.||.+||+.||.||.+||++|.|||+++....          ...++ .+|..|...+-.-+.-|
T Consensus         8 ~~L~~r~k~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~----------~~gt~~~~w~~i~~~~e~~a~~H   76 (261)
T cd07648           8 DVLYHNMKHGQIAVKELADFLRERATIEETYSKALNKLAKQASNSS----------QLGTFAPLWLVLRVSTEKLSELH   76 (261)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CcCcHHHHHHHHHHHHHHHHHHH
Confidence            3567788888899999999999999999999999999999765422          12233 59999998876555444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=98.18  E-value=3.3e-06  Score=67.42  Aligned_cols=70  Identities=17%  Similarity=0.257  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         11 LRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        11 LKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      +..|-.|+..=...+.||.+||+.||+||.+||+.|.|||..+...       .+  .-+.-.+|..|++.+-..+.-|
T Consensus         7 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~-------~~--~gsl~~a~~~i~~e~e~~a~~H   76 (236)
T cd07651           7 FDVIQTRIKDSLRTLEELRSFYKERASIEEEYAKRLEKLSRKSLGG-------SE--EGGLKNSLDTLRLETESMAKSH   76 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-------CC--cchHHHHHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999999999999999887631       11  1223358999999887554444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=98.03  E-value=2.5e-05  Score=63.64  Aligned_cols=71  Identities=23%  Similarity=0.181  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      ..|-.++..=..++.||.+||+.||+||.+||+.|-|||.++.......       +-+....|..|.+.+-..+.-|
T Consensus         8 ~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~-------~Gtl~~aw~~~~~e~e~~a~~H   78 (239)
T cd07658           8 EELRRYVKQGGDFCKELATVLQERAELELNYAKGLSKLSGKLSKASKSV-------SGTLSSAWTCVAEEMESEADIH   78 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CCcHHHHHHHHHHHHHHHHHHH
Confidence            4567788888899999999999999999999999999999884333211       2233369999988876554444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=98.01  E-value=1.9e-05  Score=63.68  Aligned_cols=69  Identities=22%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      ..|-.|+..=...+.||.+||+.||+||.+||+.|-|||....       .. + ..-+...+|..|++.+-.-+.-|
T Consensus         8 ~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLak~~~-------~~-~-e~gsl~~aw~~i~~e~e~~a~~H   76 (239)
T cd07647           8 DTLLQRLKEGKKMCKELEDFLKQRAKAEEDYGKALLKLSKSAG-------PG-D-EIGTLKSSWDSLRKETENVANAH   76 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CC-C-ccchHHHHHHHHHHHHHHHHHHH
Confidence            4577788888999999999999999999999999999996631       11 1 12233469999999887555444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1)

Probab=97.90  E-value=4.4e-05  Score=64.27  Aligned_cols=75  Identities=12%  Similarity=0.091  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCC-CcchhHHHHHhhhhhhccCc
Q psy10068         11 LRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNV-NSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        11 LKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~l-ss~~~W~~lL~~t~~~~~g~   89 (157)
                      .+.+-.|++.=..++.||.+|++.||+||.+||+.|-+||+++.....      +.... +.-..|..|++++-.-+.-|
T Consensus         7 y~~~~kr~~~g~~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~------~~~~~Gtl~~aw~~i~~etE~ia~~H   80 (258)
T cd07680           7 YKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIE------KGPQYGSLERAWGAIMTEADKVSELH   80 (258)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            356778888889999999999999999999999999999998763311      11112 22358999999987655555


Q ss_pred             CC
Q psy10068         90 AS   91 (157)
Q Consensus        90 as   91 (157)
                      ..
T Consensus        81 ~~   82 (258)
T cd07680          81 QE   82 (258)
T ss_pred             HH
Confidence            43

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=97.61  E-value=0.00015  Score=59.80  Aligned_cols=70  Identities=14%  Similarity=0.158  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      ..|-.|+..=..++.||.+||+.||+||.+||+.|.|||++...      +.-+  .-+.-..|..|...+-.-+.-|
T Consensus         8 ~~l~~r~~~g~~~~~el~~f~kERA~IE~~YaK~L~kLskk~~~------g~~E--~GTl~~sw~~~~~E~e~~a~~H   77 (240)
T cd07672           8 DCIIQHLNDGRKNCKEFEDFLKERASIEEKYGKELLNLSKKKPC------GQTE--INTLKRSLDVFKQQIDNVGQSH   77 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCcc--cchHHHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999986532      1111  1133368999888776544444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein

Probab=97.54  E-value=0.00032  Score=57.50  Aligned_cols=67  Identities=25%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-hhHHHHHhhhhhhccCc
Q psy10068         13 CLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSL-GYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        13 cLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~-~~W~~lL~~t~~~~~g~   89 (157)
                      +|-.|+-.=.....||.+||+.||.||-+||++|-|||+...          ...-..++ .+|..+.+.+-.-+.-|
T Consensus         9 ~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak~L~klak~~~----------~~~e~Gtl~~~w~~~~~~~E~~a~~H   76 (261)
T cd07674           9 VLYHNMKHGQISTKELADFVRERAAIEETYSKSMSKLSKMAS----------NGSPLGTFAPMWEVFRVSSDKLALCH   76 (261)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------CCCccchHHHHHHHHHHHHHHHHHHH
Confidence            455666677788999999999999999999999999994211          12222233 58999988776554444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=97.47  E-value=0.00029  Score=57.97  Aligned_cols=68  Identities=19%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-hhHHHHHhhhhhhccCc
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSL-GYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~-~~W~~lL~~t~~~~~g~   89 (157)
                      .+|-.++-.=.....||.+||+.||+||-+||+.|.|||....   +       .-...++ .+|..|.+.+-.-+.-|
T Consensus         8 ~vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak~L~klak~~~---~-------~~e~Gtl~~sw~~~~~e~E~~a~~H   76 (233)
T cd07649           8 EILLQKQLKGKQMQKEMAEFIRERIKIEEEYAKNLSKLSQSSL---A-------AQEEGTLGEAWAQVKKSLADEAEVH   76 (233)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---C-------CCCCChHHHHHHHHHHHHHHHHHHH
Confidence            4556666677788999999999999999999999999996332   0       1122233 58998888776544444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein

Probab=97.41  E-value=0.0004  Score=57.82  Aligned_cols=61  Identities=26%  Similarity=0.311  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-hhHHHHHhhhh
Q psy10068         13 CLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSL-GYQYEVEDLSM   83 (157)
Q Consensus        13 cLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~-~~W~~lL~~t~   83 (157)
                      .|=.|+-.-.....||.+||+.||.||-+||++|-|||+....          .....++ .+|..|...+-
T Consensus        16 ~L~~r~k~g~~~~kel~~f~keRa~iEe~Yak~L~kLak~~~~----------~~~~Gt~~~~~~~~~~e~e   77 (269)
T cd07673          16 VLYHNMKHGQISTKELSDFIRERATIEEAYSRSMTKLAKSASN----------YSQLGTFAPVWDVFKTSTE   77 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------CCCcChHHHHHHHHHHHHH
Confidence            4555666667788999999999999999999999999996631          1112222 47888866554

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein

Probab=97.28  E-value=0.00079  Score=54.61  Aligned_cols=46  Identities=33%  Similarity=0.485  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy10068          9 EQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQ   54 (157)
Q Consensus         9 EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~   54 (157)
                      +-.-+|-.|+-.=..+..||.+||+-||+||.+||+.|-|||.+..
T Consensus         5 ~a~~~l~~Rl~~~~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~   50 (228)
T cd07650           5 EATEILRIRLSQIKLVNTELADWLQERRRLERQYVQGLRKLARRNE   50 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4456778888888889999999999999999999999999998764

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=97.23  E-value=0.00078  Score=55.65  Aligned_cols=69  Identities=14%  Similarity=0.124  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      +.|=.|+.-=..+..||.+||+.||+||.+||+.|.|||.+....+       +  .-+....|..|.+.+-..+.-|
T Consensus         8 ~~l~~r~~~g~~~c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~-------e--~gTl~~a~~~~~~e~e~~a~~H   76 (242)
T cd07671           8 EILLQRLLDGRKMCKDVEELLKQRAQAEERYGKELVQIARKAGGQT-------E--INTLKASFDQLKQQIENIGNSH   76 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-------c--chHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777788999999999999999999999999999765311       1  1233368999987776443333

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

Probab=97.04  E-value=0.0015  Score=55.36  Aligned_cols=72  Identities=17%  Similarity=0.130  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCC-CcchhHHHHHhhhhhhccCc
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNV-NSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~l-ss~~~W~~lL~~t~~~~~g~   89 (157)
                      +.+=.|++.=..+..||.+||+.||+||.+||+.|-+||++...-+-..      -.. +--..|.+|.+.+-.-+..|
T Consensus         8 ~~~vkR~~dG~~~C~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g------~eyGTL~~sw~~~~~e~E~ia~~H   80 (258)
T cd07681           8 RRTVKRIEDGYRLCNDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKG------PQYGTLEKAWHAFLTAAERLSEIH   80 (258)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcc------cccChHHHHHHHHHHHHHHHHHHH
Confidence            3455677777888999999999999999999999999998865433210      011 11247888887776544444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to

>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2)

Probab=96.87  E-value=0.0047  Score=52.84  Aligned_cols=73  Identities=12%  Similarity=0.099  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         12 RCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        12 KcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      +.+-.|++-=..+..||.+||+-||+||-.||+.|-++|++....+..    ..+ .-+--..|.+|.+.+-.-+.-|
T Consensus         8 ~~~vkR~~DG~~~C~dl~~~~~ERA~IE~~Yak~L~~~akkw~~~ie~----gpe-yGTl~~aw~~~~~Eae~~s~~H   80 (258)
T cd07679           8 KRTVKRIDDGHRLCNDLMNCLHERARIEKVYAQQLTEWAKRWRQLVEK----GPQ-YGTVEKAWCALMSEAEKVSELH   80 (258)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCc-cchHHHHHHHHHHHHHHHHHHH
Confidence            455677888889999999999999999999999999999887665531    111 0122258999988876544443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su

>KOG3565|consensus

Probab=93.82  E-value=0.13  Score=48.82  Aligned_cols=49  Identities=14%  Similarity=0.424  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy10068          6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQ   54 (157)
Q Consensus         6 QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~   54 (157)
                      .+.++++.+++-+-....+|.++.+|++-||.+|.+|+..|..|+.+|.
T Consensus        11 ~~~d~~~~~~~~~q~gL~~le~~~~~~~era~~ek~y~~~l~~l~~k~~   59 (640)
T KOG3565|consen   11 ELKDAFKATEQSTQNGLDWLERIVQFLKERADKEKEYEEKLRSLCKKFE   59 (640)
T ss_pred             HHHhHHHHHHHHHhhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhhHhh
Confidence            5678889999999999999999999999999999999999999999554

>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase

Probab=91.15  E-value=0.65  Score=39.94  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh---hhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         13 CLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQ---NELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        13 cLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~---krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      +|-.+.+...-||+-|.-||-.||--+.|||..|-.++.-   ..|....   ..-...-+++..|..|++||-.-+..+
T Consensus         9 all~~qd~ElrllE~mk~~m~~raK~d~eya~~L~~~~~q---~~k~~~~~~~~~~~~~s~i~~sW~~il~QTE~isk~~   85 (237)
T cd07685           9 ALLRLQDSELRLMEVMKKWMSQRAKSDREYSGMLHHMSAQ---VEKLDRSQHGALSMLSSPISQSWAVLVSQTETLSQVL   85 (237)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---hccccccchhhhcccCChHHHHHHHHHHHHHHHHHHH
Confidence            4566788999999999999999999999999999877643   2221111   111112233479999999998666554


Q ss_pred             CCCCCCCCCCChhhhhhhh
Q psy10068         90 ASPPEPNNNNDDEFQDGVL  108 (157)
Q Consensus        90 asp~~p~~~~~~~~~~~~~  108 (157)
                      .       .+.++|..|++
T Consensus        86 ~-------~~Aeeln~~~~   97 (237)
T cd07685          86 R-------KHAEDLNAGPL   97 (237)
T ss_pred             H-------HHHHHHHhHHH
Confidence            2       35567777754

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def

>KOG2398|consensus

Probab=89.15  E-value=0.37  Score=45.61  Aligned_cols=29  Identities=45%  Similarity=0.693  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy10068         24 VIGELQDYFRKRAEVELDYSKSLDKLARS   52 (157)
Q Consensus        24 LLqDLqEffRRRAEIE~EYSR~LEKLAer   52 (157)
                      ...+|.+|+++|+.||-+|++.|.+|+..
T Consensus         7 ~~~~l~~F~~eRa~iE~~y~k~~~~l~~k   35 (611)
T KOG2398|consen    7 STKELADFVRERASIEEDYAKRMGKLAAK   35 (611)
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            35789999999999999999999998864

>KOG2856|consensus

Probab=82.74  E-value=3.6  Score=38.49  Aligned_cols=69  Identities=13%  Similarity=0.098  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCcC
Q psy10068         17 RMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGKA   90 (157)
Q Consensus        17 r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~a   90 (157)
                      |.|-=..|+.||+.-++.||+||.-||+.|---|++.-+-+-    |-.+ --++--+|..+++.+-.-|.-|-
T Consensus        22 Ri~DG~rlc~Dl~~~~qERA~IEk~YaqqL~~wakkWr~lve----kgpq-yGt~e~aW~~~~teaerlS~lH~   90 (472)
T KOG2856|consen   22 RIEDGHRLCNDLMNCSQERARIEKAYAQQLTDWAKKWRQLVE----KGPQ-YGTVEKAWNAFMTEAERLSELHL   90 (472)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcc-cchHHHHHHHHHHHHHHHHHHHH
Confidence            445556799999999999999999999999999887765443    2221 12233589999987766555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	7e-08
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	3e-07
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	6e-05
3g9g_A	287	Suppressor of yeast profilin deletion; SYP1, BAR d	4e-04

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 Length = 305

 Score = 49.3 bits (117), Expect = 7e-08
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 1  MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
          M    +L +Q   L+   +    ++ +   + ++R E+EL Y+K L  L++  Q +   +
Sbjct: 6  MSWGTELWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSK 65

Query: 61 KQNELDNNVNS 71
          ++ E       
Sbjct: 66 EEEEYKYTSCK 76

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 Length = 301

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 11/60 (18%), Positives = 23/60 (38%)

Query: 6  QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNEL 65
            + Q   L+   +    ++     + ++R EVE  Y+K L  L +    +   +   E 
Sbjct: 4  GSSGQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPES 63

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} Length = 406

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 5/52 (9%), Positives = 19/52 (36%)

Query: 13 CLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
           L    E +  ++  ++ +  +R + + +Y+  L  ++             +
Sbjct: 16 VLQQMQEAELRLLEGMRKWMAQRVKSDREYAGLLHHMSLQDSGGQSRAISPD 67

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} Length = 287

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 11/81 (13%), Positives = 30/81 (37%)

Query: 5   LQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
               E    + +R+     +  +    F++ A ++ +Y++ L K+    +   K      
Sbjct: 39  KSPYEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQM 98

Query: 65  LDNNVNSLGYQYEVEDLSMKS 85
           +++NV +          S+  
Sbjct: 99  IESNVLTPQEMSAFRFNSLGE 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	99.13
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	99.06
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	98.93
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	98.91
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	98.88
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	98.77
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	98.76
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	98.68
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	98.65
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.6
3g9g_A	287	Suppressor of yeast profilin deletion; SYP1, BAR d	97.5
3qwe_A	279	GMIP, GEM-interacting protein; structural genomics	95.53

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=99.13  E-value=2.4e-11  Score=94.39  Aligned_cols=80  Identities=13%  Similarity=0.182  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCC-CCcchhHHHHHhhhhhh
Q psy10068          7 LNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNN-VNSLGYQYEVEDLSMKS   85 (157)
Q Consensus         7 L~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~-lss~~~W~~lL~~t~~~   85 (157)
                      |-+|+++|..|++.-..++.||.+||++||+||.+||++|.|||+++..+...   +-+..+ .+...+|..|++++...
T Consensus         5 fw~g~~~l~~~~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~---~~~~~~~~t~~~~w~~~l~~~e~~   81 (301)
T 2efk_A            5 SSGQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPA---KDDPESKFSQQQSFVQILQEVNDF   81 (301)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTSHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cccccccchHHHHHHHHHHHHHHH
Confidence            44799999999999999999999999999999999999999999999754210   111111 24457999999998755


Q ss_pred             ccCc
Q psy10068         86 TSGK   89 (157)
Q Consensus        86 ~~g~   89 (157)
                      +.-|
T Consensus        82 a~~h   85 (301)
T 2efk_A           82 AGQR   85 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=99.06  E-value=1e-10  Score=90.47  Aligned_cols=85  Identities=16%  Similarity=0.229  Sum_probs=65.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCCcchhHHHHHh
Q psy10068          2 DIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDN-NVNSLGYQYEVED   80 (157)
Q Consensus         2 EIR~QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw-~lss~~~W~~lL~   80 (157)
                      .+...|-+|+++|..|++.-+.++.||.+||++||+||.+||++|.|||.++..+..   .+-+.+ .-+...+|..|++
T Consensus         7 ~f~~~fw~g~~~l~~r~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~~~~---~~~~~~~~~t~~~aw~~~~~   83 (305)
T 2efl_A            7 SWGTELWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKN---SKEEEEYKYTSCKAFISNLN   83 (305)
T ss_dssp             CHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----------CTTSHHHHHHHHHHH
T ss_pred             ChhhHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCccccccccHHHHHHHHHH
Confidence            456678889999999999999999999999999999999999999999999865431   011222 2244479999999


Q ss_pred             hhhhhccCc
Q psy10068         81 LSMKSTSGK   89 (157)
Q Consensus        81 ~t~~~~~g~   89 (157)
                      ++...+.-|
T Consensus        84 ~~e~~a~~h   92 (305)
T 2efl_A           84 EMNDYAGQH   92 (305)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            886554433

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=98.93  E-value=9.2e-10  Score=92.52  Aligned_cols=77  Identities=8%  Similarity=0.069  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        10 QLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      ...+|..|++.-..+|.||.+|||.||+||.+||++|.|||++|..+...    .++..-+...+|..|++++...+.-|
T Consensus        13 gf~~L~kr~~~g~~lledl~~F~reRA~IE~eYAk~L~kLakk~~~k~~~----~~~~~~tl~~aW~~ll~ete~~a~~H   88 (406)
T 4dyl_A           13 GHGVLQQMQEAELRLLEGMRKWMAQRVKSDREYAGLLHHMSLQDSGGQSR----AISPDSPISQSWAEITSQTEGLSRLL   88 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999875331    22111122379999999998776665


Q ss_pred             C
Q psy10068         90 A   90 (157)
Q Consensus        90 a   90 (157)
                      .
T Consensus        89 ~   89 (406)
T 4dyl_A           89 R   89 (406)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=98.91  E-value=3.4e-09  Score=81.32  Aligned_cols=72  Identities=24%  Similarity=0.199  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccC
Q psy10068          9 EQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSG   88 (157)
Q Consensus         9 EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g   88 (157)
                      +++.+|..|++.-..++.||.+||++||+||.+||++|.|||+++...         .-.-+...+|..|++.+...+.-
T Consensus        18 ~g~~~l~~~~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~~---------~~~gs~~~~w~~~~~~~e~~a~~   88 (276)
T 2v0o_A           18 SGFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASNY---------SQLGTFAPVWDVFKTSTEKLANC   88 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------CCCSSSGGGHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------CCcchHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999998531         11223336999999987544443


Q ss_pred             c
Q psy10068         89 K   89 (157)
Q Consensus        89 ~   89 (157)
                      |
T Consensus        89 h   89 (276)
T 2v0o_A           89 H   89 (276)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=98.88  E-value=2.4e-09  Score=85.53  Aligned_cols=76  Identities=12%  Similarity=0.067  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccC
Q psy10068          9 EQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSG   88 (157)
Q Consensus         9 EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g   88 (157)
                      .++++|..|++.-..++.||.+||++||+||.+||++|.|||.++..++..    .+ -.-+...+|..|++.+...+.-
T Consensus        20 ~g~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~----~~-~~gtl~~aw~~~~~e~e~~a~~   94 (337)
T 2x3v_A           20 GNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEK----GP-QYGSLERAWGAMMTEADKVSEL   94 (337)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CC-CCchHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999886542    11 1222336999999988755544


Q ss_pred             c
Q psy10068         89 K   89 (157)
Q Consensus        89 ~   89 (157)
                      |
T Consensus        95 H   95 (337)
T 2x3v_A           95 H   95 (337)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=98.77  E-value=1.4e-08  Score=80.39  Aligned_cols=76  Identities=12%  Similarity=0.106  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccC
Q psy10068          9 EQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSG   88 (157)
Q Consensus         9 EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g   88 (157)
                      +++++|..|++.-..++.||.+||+.||+||.+||++|.|||.++..++..    .+. .-+...+|..|++.+...+.-
T Consensus        29 ~g~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~----~~e-~gtl~~aw~~i~~e~e~~a~~  103 (312)
T 3abh_A           29 GNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEK----GPQ-YGTVEKAWMAFMSEAERVSEL  103 (312)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCC-CChHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999876531    111 123336999999988765544


Q ss_pred             c
Q psy10068         89 K   89 (157)
Q Consensus        89 ~   89 (157)
                      |
T Consensus       104 H  104 (312)
T 3abh_A          104 H  104 (312)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=98.76  E-value=9.5e-09  Score=83.20  Aligned_cols=76  Identities=12%  Similarity=0.106  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccC
Q psy10068          9 EQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSG   88 (157)
Q Consensus         9 EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g   88 (157)
                      +++++|..|++.-..++.||.+||+.||+||.+||++|.|||.++..++..    .+. .-+...+|..|++.+...+..
T Consensus        29 ~g~~~L~~r~~~g~~~~~el~~f~keRa~IE~eYak~L~kLakk~~~~~~~----~~e-~gtl~~aw~~l~~e~e~~a~~  103 (350)
T 3aco_A           29 GNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEK----GPQ-YGTVEKAWMAFMSEAERVSEL  103 (350)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----SSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCC-CchHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999876531    111 123336999999988755544


Q ss_pred             c
Q psy10068         89 K   89 (157)
Q Consensus        89 ~   89 (157)
                      |
T Consensus       104 H  104 (350)
T 3aco_A          104 H  104 (350)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=98.68  E-value=2.8e-08  Score=77.89  Aligned_cols=75  Identities=17%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        10 QLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      .+..|-.|++.-..++.||.+||++||+||.+||++|.|||.++..++...    + -.-+...+|..|++.+...+..|
T Consensus         9 g~~~l~~r~~~g~~~~~el~~f~keRa~iE~~Yak~L~kL~~~~~~~~~~~----~-~~gs~~~aw~~~~~~~e~~a~~h   83 (290)
T 3i2w_A            9 NYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKG----P-EYGTTEAAWKGVLTESERISDVH   83 (290)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----S-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----C-CCchHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999999999999998755321    1 12233469999998877555544

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=98.65  E-value=3.7e-08  Score=80.08  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccCc
Q psy10068         10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSGK   89 (157)
Q Consensus        10 QLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g~   89 (157)
                      ++..|-.+++.-..++.||.+||+.||+||.+||+.|.|||.+|..+...    .+ -.-+...+|..|++.+...+.-|
T Consensus        21 g~~~l~~~~~~g~~~~~el~~f~keRa~iE~~Yak~L~kLakk~~~~~~~----~~-e~gsl~~aw~~i~~e~e~~a~~H   95 (320)
T 3m3w_A           21 NYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEK----GP-QYGTLEKAWHAFFTAAERLSELH   95 (320)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SS-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CC-CCChHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999998765431    11 12233369999999887655544

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.60  E-value=5.8e-08  Score=82.99  Aligned_cols=77  Identities=12%  Similarity=0.105  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcchhHHHHHhhhhhhccC
Q psy10068          9 EQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVNSLGYQYEVEDLSMKSTSG   88 (157)
Q Consensus         9 EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~lss~~~W~~lL~~t~~~~~g   88 (157)
                      .++.+|-.|++.-+.++.||.+||++||+||.+||+.|.|||+++..+++..     ...-+...+|..|++++...+..
T Consensus        22 ~G~~~L~~r~~~g~~~~~el~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~-----~e~gtl~~aw~~~~~e~e~~a~~   96 (486)
T 3haj_A           22 GNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKG-----PQYGTVEKAWMAFMSEAERVSEL   96 (486)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----SCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----CCccHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999997765421     11223347999999988766555


Q ss_pred             cC
Q psy10068         89 KA   90 (157)
Q Consensus        89 ~a   90 (157)
                      |.
T Consensus        97 H~   98 (486)
T 3haj_A           97 HL   98 (486)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0004  Score=57.96  Aligned_cols=45  Identities=13%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy10068         10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQ   54 (157)
Q Consensus        10 QLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~   54 (157)
                      =..+|-.|...--.+-.||.+||+-|++||..||+.|-||+++..
T Consensus        44 a~~iL~~Rl~~~k~i~keL~~f~kERa~IEe~YakqLrkLakk~~   88 (287)
T 3g9g_A           44 ATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENE   88 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            356788888877778999999999999999999999999999866

>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}

Probab=95.53  E-value=0.034  Score=46.58  Aligned_cols=40  Identities=30%  Similarity=0.331  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy10068         18 METQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRH   57 (157)
Q Consensus        18 ~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~   57 (157)
                      +=.=+.-..|+-.|++||+-||.|||++|-|||+....=+
T Consensus        23 ~K~s~~~~Ke~~~flkKRa~lE~E~Ak~L~KLa~~~~~~~   62 (279)
T 3qwe_A           23 AKTWSRYAKELLAWTEKRASYELEFAKSTMKIAEAGKVSI   62 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334445579999999999999999999999998765533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d2efla1	288	a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP	9e-07
d2efka1	279	a.238.1.4 (A:10-288) CDC42-interacting protein 4,	8e-05

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 1  MDIRLQLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQ 60
          M    +L +Q   L+   +    ++ +   + ++R E+EL Y+K L  L++  Q +   +
Sbjct: 1  MSWGTELWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSK 60

Query: 61 KQNELDNNVNS 71
          ++ E       
Sbjct: 61 EEEEYKYTSCK 71

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 279

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 8e-05
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNE 64
          Q   L+   +    ++     + ++R EVE  Y+K L  L +    +   +   E
Sbjct: 1  QFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPE 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	99.03
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	98.87

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.3e-10  Score=85.28  Aligned_cols=75  Identities=13%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCCcchhHHHHHhhhhhhcc
Q psy10068         10 QLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDN-NVNSLGYQYEVEDLSMKSTS   87 (157)
Q Consensus        10 QLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw-~lss~~~W~~lL~~t~~~~~   87 (157)
                      |+..|..+++..+.++.+|.+||++||+||.+||++|.|||..|..+....   .+.+ ..+....|..|++.+.....
T Consensus         1 q~~~l~~~~~~g~~~~~~~~~~~~eRa~iE~~Yak~L~kL~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~a~   76 (279)
T d2efka1           1 QFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAK---DDPESKFSQQQSFVQILQEVNDFAG   76 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---ccCcccchHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999887654321   2222 33344689999988765443

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.8e-10  Score=81.84  Aligned_cols=77  Identities=18%  Similarity=0.245  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-cchhHHHHHhhhhh
Q psy10068          6 QLNEQLRCLDLRMETQTAVIGELQDYFRKRAEVELDYSKSLDKLARSLQLRHKEQKQNELDNNVN-SLGYQYEVEDLSMK   84 (157)
Q Consensus         6 QL~EQLKcLd~r~E~q~~LLqDLqEffRRRAEIE~EYSR~LEKLAerf~~R~K~~k~krdqw~ls-s~~~W~~lL~~t~~   84 (157)
                      .|.+|+.+|-.+++..+.++.+|.+||++||+||.+||++|.||+..|..+...   ....+... ...+|..+++.+..
T Consensus         6 ~l~d~~~~l~~~~~~~~~~~~~~~~~~~eRa~iE~eYak~L~kl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   82 (288)
T d2efla1           6 ELWDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNS---KEEEEYKYTSCKAFISNLNEMND   82 (288)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----------CTTSHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cccccccCcHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999887533221   12223333 33699999987654


Q ss_pred             h
Q psy10068         85 S   85 (157)
Q Consensus        85 ~   85 (157)
                      .
T Consensus        83 ~   83 (288)
T d2efla1          83 Y   83 (288)
T ss_dssp             H
T ss_pred             H
Confidence            3