Psyllid ID: psy10106

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MGPKPKKGGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEEccccEEEEEccccEEEEEEccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEcc
Coil and Loop (DISEMBL)
mgpkpkkggaapkddkaplikstdmpndMQQEVITVAKAAYERCNNFADLAAYIKKEFenkygpawhcvvgqgfgsfvthdrsSFIYLYIGMDGILLFRHS
Flexible Loop (DISEMBL)
mgpkpkkggaapkddkaplikstdmpnDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS
Low Complexity Region (SEG)
MgpkpkkggaapkddkapLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS
Disordered region (IsUnstruct)
*******************************EVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLF***
Disordered Region (DISOPRED)
*******************IKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS
Disordered Region (DISEMBL)
**************DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS
Disordered Region (DISPRO)
***************KAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPKPKKGGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q22799	89	Dynein light chain 1, cyt	yes	N/A	0.841	0.955	0.541	9e-23
O02414	89	Dynein light chain LC6, f	N/A	N/A	0.841	0.955	0.517	1e-22
Q78P75	89	Dynein light chain 2, cyt	yes	N/A	0.841	0.955	0.529	2e-22
Q9D0M5	89	Dynein light chain 2, cyt	yes	N/A	0.841	0.955	0.529	2e-22
Q96FJ2	89	Dynein light chain 2, cyt	yes	N/A	0.841	0.955	0.529	2e-22
Q3MHR3	89	Dynein light chain 2, cyt	yes	N/A	0.841	0.955	0.529	2e-22
O94111	94	Dynein light chain, cytop	yes	N/A	0.900	0.968	0.516	4e-22
Q24117	89	Dynein light chain 1, cyt	yes	N/A	0.841	0.955	0.517	6e-22
O96860	89	Dynein light chain 2, cyt	yes	N/A	0.841	0.955	0.505	2e-21
P63170	89	Dynein light chain 1, cyt	no	N/A	0.841	0.955	0.505	2e-21

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM +DMQQ+ I  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87

Acts as a non-catalytic accessory component of a dynein complex.
Caenorhabditis elegans (taxid: 6239)

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 60/85 (70%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          ++  +IK+ DMP DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  ERKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   +LLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAVLLFK 87

Anthocidaris crassispina (taxid: 7629)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 59/85 (69%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 59/85 (69%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 59/85 (69%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 59/85 (69%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

>sp|O94111|DYL1_EMENI Dynein light chain, cytoplasmic OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudG PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 60/91 (65%)

Query: 9  GAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHC 68
           +  KD   P IKS DM  DMQQE + VA  A E+ +   D+A YIK+EF+++ G  WHC
Sbjct: 2  ASEKKDKLEPQIKSVDMSEDMQQEAVEVAIEAMEKYHIEKDIAQYIKREFDSRKGATWHC 61

Query: 69 VVGQGFGSFVTHDRSSFIYLYIGMDGILLFR 99
          VVG+ FGSFVTH+   FIY Y+G   ILLF+
Sbjct: 62 VVGRNFGSFVTHETKHFIYFYLGHCAILLFK 92

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  +MQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETRHFIYFYLGQVAILLFK 87

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 59/85 (69%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  +MQQ+ +  A  A E+ N   D+AA+IKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETRHFIYFYLGQVAILLFK 87

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 59/85 (69%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  +MQQ+ +  A  A E+ N   D+AA+IKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
209878762	89	dynein light chain 1 protein [Cryptospor	0.841	0.955	0.576	1e-22
67621754	89	cut up CG6998-PA [Cryptosporidium homini	0.841	0.955	0.552	1e-21
340371207	89	PREDICTED: dynein light chain 2, cytopla	0.841	0.955	0.529	1e-21
340058215	90	putative dynein light chain [Trypanosoma	0.841	0.944	0.552	2e-21
71754499	90	dynein light chain [Trypanosoma brucei b	0.841	0.944	0.541	2e-21
171473974	91	SJCHGC01950 protein [Schistosoma japonic	0.831	0.923	0.547	2e-21
241363986	89	dynein light chain [Ixodes scapularis] g	0.841	0.955	0.541	2e-21
195998373	89	neuronal nitric oxidse synthase protein	0.841	0.955	0.541	3e-21
71659763	90	dynein light chain [Trypanosoma cruzi st	0.841	0.944	0.552	3e-21
17552836	89	Protein DLC-1 [Caenorhabditis elegans] g	0.841	0.955	0.541	4e-21

>gi|209878762|ref|XP_002140822.1| dynein light chain 1 protein [Cryptosporidium muris RN66] gi|209556428|gb|EEA06473.1| dynein light chain 1 protein, putative [Cryptosporidium muris RN66]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 62/85 (72%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          DK  +IK+ DM +DMQQ+ I+ A AA ER N   D+AAYIKKEF+ KY P WHCVVG+ F
Sbjct: 3  DKKAVIKNADMSDDMQQDAISCAAAALERHNVEKDIAAYIKKEFDRKYNPTWHCVVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   +LLF+
Sbjct: 63 GSYVTHETRHFIYFYMGQVAVLLFK 87

Source: Cryptosporidium muris RN66

Species: Cryptosporidium muris

Genus: Cryptosporidium

Family: Cryptosporidiidae

Order: Eucoccidiorida

Class: Coccidia

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|67621754|ref|XP_667783.1| cut up CG6998-PA [Cryptosporidium hominis TU502] gi|126644110|ref|XP_001388191.1| cut up CG6998-PA [Cryptosporidium parvum Iowa II] gi|54658946|gb|EAL37552.1| cut up CG6998-PA [Cryptosporidium hominis] gi|126117264|gb|EAZ51364.1| cut up CG6998-PA, putative [Cryptosporidium parvum Iowa II]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 62/85 (72%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          +K  +IK+ DM ++MQQ+ I+ A AA ER N   D+AAYIKKEF+ KY P WHCVVG+ F
Sbjct: 3  EKKAVIKNADMSDEMQQDAISCAAAAIERHNVEKDIAAYIKKEFDRKYNPTWHCVVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   +LLF+
Sbjct: 63 GSYVTHETRHFIYFYMGQIAVLLFK 87

Source: Cryptosporidium hominis TU502

Species: Cryptosporidium hominis

Genus: Cryptosporidium

Family: Cryptosporidiidae

Order: Eucoccidiorida

Class: Coccidia

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|340371207|ref|XP_003384137.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Amphimedon queenslandica]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 61/85 (71%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  DMQQ+ + +A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSEDMQQDAVEIATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+  +FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKNFIYFYLGQVAILLFK 87

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|340058215|emb|CCC52569.1| putative dynein light chain [Trypanosoma vivax Y486] gi|340058218|emb|CCC52572.1| putative dynein light chain [Trypanosoma vivax Y486]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 60/85 (70%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DMP DMQ + I VA  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 4  DRKAVIKNADMPEDMQSDAIEVALQAMEKFNIEKDIAAYIKKEFDRKYQPTWHCIVGRNF 63

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+  SF+Y Y G   ILLF+
Sbjct: 64 GSYVTHETHSFLYFYFGQVAILLFK 88

Source: Trypanosoma vivax Y486

Species: Trypanosoma vivax

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|71754499|ref|XP_828164.1| dynein light chain [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|70833550|gb|EAN79052.1| dynein light chain, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|70908094|emb|CAJ17061.1| dynein light chain, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261333961|emb|CBH16955.1| dynein light chain, putative [Trypanosoma brucei gambiense DAL972]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DMP DMQ + + VA  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 4  DRKAIIKNADMPEDMQSDAVEVALQALEKFNIEKDIAAYIKKEFDKKYQPTWHCIVGRNF 63

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+  SF+Y Y G   ILLF+
Sbjct: 64 GSYVTHETHSFLYFYFGQVAILLFK 88

Source: Trypanosoma brucei brucei strain 927/4 GUTat10.1

Species: Trypanosoma brucei

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|171473974|gb|ACB47095.1| SJCHGC01950 protein [Schistosoma japonicum] gi|226469826|emb|CAX70194.1| Dynein light chain LC6, flagellar outer arm [Schistosoma japonicum] gi|226487620|emb|CAX74680.1| Dynein light chain LC6, flagellar outer arm [Schistosoma japonicum] gi|226487622|emb|CAX74681.1| Dynein light chain LC6, flagellar outer arm [Schistosoma japonicum]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 60/84 (71%)

Query: 16 KAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFG 75
          +  ++K+ DMP DMQQ+ I VA  A+E+ N   D+AAYIKKEF+ KY P WHCVVG+ +G
Sbjct: 6  RKAVVKNADMPEDMQQDAIEVATHAFEKYNIEKDIAAYIKKEFDKKYNPTWHCVVGRNYG 65

Query: 76 SFVTHDRSSFIYLYIGMDGILLFR 99
          S+VTH+   FIY Y G   ILLF+
Sbjct: 66 SYVTHETKHFIYFYAGQVAILLFK 89

Source: Schistosoma japonicum

Species: Schistosoma japonicum

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|241363986|ref|XP_002408929.1| dynein light chain [Ixodes scapularis] gi|215497427|gb|EEC06921.1| dynein light chain [Ixodes scapularis]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          DK  +IK+ DM  +MQQ+ + VA  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DKKAVIKNADMSEEMQQDAVDVATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195998373|ref|XP_002109055.1| neuronal nitric oxidse synthase protein inhibitor [Trichoplax adhaerens] gi|190589831|gb|EDV29853.1| neuronal nitric oxidse synthase protein inhibitor [Trichoplax adhaerens]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 59/85 (69%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMAEDMQQDAVECATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GSFVTH+   FIY Y+G   ILLF+
Sbjct: 63 GSFVTHETKHFIYFYLGQVAILLFK 87

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|71659763|ref|XP_821602.1| dynein light chain [Trypanosoma cruzi strain CL Brener] gi|70886985|gb|EAN99751.1| dynein light chain, putative [Trypanosoma cruzi]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 60/85 (70%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DMP DMQ + I VA  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 4  DRKAVIKNADMPEDMQADAIEVALQAMEKFNIEKDVAAYIKKEFDKKYQPTWHCIVGRNF 63

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+  SF+Y Y G   ILLF+
Sbjct: 64 GSYVTHETHSFLYFYFGQVAILLFK 88

Source: Trypanosoma cruzi strain CL Brener

Species: Trypanosoma cruzi

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|17552836|ref|NP_498422.1| Protein DLC-1 [Caenorhabditis elegans] gi|268553421|ref|XP_002634696.1| C. briggsae CBR-DLC-1 protein [Caenorhabditis briggsae] gi|308499012|ref|XP_003111692.1| CRE-DLC-1 protein [Caenorhabditis remanei] gi|2494222|sp|Q22799.1|DYL1_CAEEL RecName: Full=Dynein light chain 1, cytoplasmic gi|308239601|gb|EFO83553.1| CRE-DLC-1 protein [Caenorhabditis remanei] gi|341879730|gb|EGT35665.1| CBN-DLC-1 protein [Caenorhabditis brenneri] gi|351047535|emb|CCD63216.1| Protein DLC-1 [Caenorhabditis elegans]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query: 15 DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
          D+  +IK+ DM +DMQQ+ I  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 3  DRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 62

Query: 75 GSFVTHDRSSFIYLYIGMDGILLFR 99
          GS+VTH+   FIY Y+G   ILLF+
Sbjct: 63 GSYVTHETKHFIYFYLGQVAILLFK 87

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
WB|WBGene00001005	89	dlc-1 [Caenorhabditis elegans	0.801	0.910	0.555	1.5e-21
UNIPROTKB|Q22799	89	dlc-1 "Dynein light chain 1, c	0.801	0.910	0.555	1.5e-21
UNIPROTKB|F1NRI4	91	DYNLL2 "Uncharacterized protei	0.801	0.890	0.543	2.4e-21
UNIPROTKB|Q3MHR3	89	DYNLL2 "Dynein light chain 2,	0.801	0.910	0.543	2.4e-21
UNIPROTKB|E2RFR5	91	DYNLL2 "Uncharacterized protei	0.801	0.890	0.543	2.4e-21
UNIPROTKB|Q96FJ2	89	DYNLL2 "Dynein light chain 2,	0.801	0.910	0.543	2.4e-21
UNIPROTKB|F2Z536	89	DYNLL2 "Uncharacterized protei	0.801	0.910	0.543	2.4e-21
MGI|MGI:1915347	89	Dynll2 "dynein light chain LC8	0.801	0.910	0.543	2.4e-21
RGD|619860	89	Dynll2 "dynein light chain LC8	0.801	0.910	0.543	2.4e-21
ZFIN|ZDB-GENE-030828-11	126	dynll2a "dynein, light chain,	0.801	0.642	0.543	2.4e-21

WB|WBGene00001005 dlc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 45/81 (55%), Positives = 58/81 (71%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM +DMQQ+ I  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     7 VIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    67 THETKHFIYFYLGQVAILLFK 87

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0006260 "DNA replication" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q22799 dlc-1 "Dynein light chain 1, cytoplasmic" [Caenorhabditis elegans (taxid:6239)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 45/81 (55%), Positives = 58/81 (71%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM +DMQQ+ I  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     7 VIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    67 THETKHFIYFYLGQVAILLFK 87

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NRI4 DYNLL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     9 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 68

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    69 THETKHFIYFYLGQVAILLFK 89

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q3MHR3 DYNLL2 "Dynein light chain 2, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     7 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    67 THETKHFIYFYLGQVAILLFK 87

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RFR5 DYNLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     9 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 68

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    69 THETKHFIYFYLGQVAILLFK 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|Q96FJ2 DYNLL2 "Dynein light chain 2, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     7 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    67 THETKHFIYFYLGQVAILLFK 87

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016459 "myosin complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|F2Z536 DYNLL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     7 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    67 THETKHFIYFYLGQVAILLFK 87

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

MGI|MGI:1915347 Dynll2 "dynein light chain LC8-type 2" [Mus musculus (taxid:10090)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     7 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    67 THETKHFIYFYLGQVAILLFK 87

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0016459 "myosin complex" evidence=IDA

GO:0030286 "dynein complex" evidence=NAS

GO:0046907 "intracellular transport" evidence=NAS

RGD|619860 Dynll2 "dynein light chain LC8-type 2" [Rattus norvegicus (taxid:10116)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:     7 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:    67 THETKHFIYFYLGQVAILLFK 87

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEP

GO:0008092 "cytoskeletal protein binding" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA;ISO

GO:0030286 "dynein complex" evidence=IEA

ZFIN|ZDB-GENE-030828-11 dynll2a "dynein, light chain, LC8-type 2a" [Danio rerio (taxid:7955)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/81 (54%), Positives = 57/81 (70%)

Query:    19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
             +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct:    44 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 103

Query:    79 THDRSSFIYLYIGMDGILLFR 99
             TH+   FIY Y+G   ILLF+
Sbjct:   104 THETKHFIYFYLGQVAILLFK 124

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.5411	0.8415	0.9550	yes	N/A
Q9D0M5	DYL2_MOUSE	No assigned EC number	0.5294	0.8415	0.9550	yes	N/A
P61273	DYL1_MACFA	No assigned EC number	0.5058	0.8415	0.9550	N/A	N/A
Q9UR05	DYL1_SCHPO	No assigned EC number	0.5	0.8118	0.9647	yes	N/A
Q78P75	DYL2_RAT	No assigned EC number	0.5294	0.8415	0.9550	yes	N/A
Q6FUJ0	DYL1_CANGA	No assigned EC number	0.4074	0.8019	0.9418	yes	N/A
Q86A88	DYL_DICDI	No assigned EC number	0.4875	0.7920	0.8791	yes	N/A
O94111	DYL1_EMENI	No assigned EC number	0.5164	0.9009	0.9680	yes	N/A
Q6CWX4	DYL1_KLULA	No assigned EC number	0.3536	0.8118	0.9425	yes	N/A
P63170	DYL1_RAT	No assigned EC number	0.5058	0.8415	0.9550	no	N/A
P61285	DYL1_BOVIN	No assigned EC number	0.5058	0.8415	0.9550	no	N/A
O02414	DYL1_HELCR	No assigned EC number	0.5176	0.8415	0.9550	N/A	N/A
Q24117	DYL1_DROME	No assigned EC number	0.5176	0.8415	0.9550	yes	N/A
Q759T0	DYL1_ASHGO	No assigned EC number	0.3928	0.8316	0.9545	yes	N/A
Q96FJ2	DYL2_HUMAN	No assigned EC number	0.5294	0.8415	0.9550	yes	N/A
Q3MHR3	DYL2_BOVIN	No assigned EC number	0.5294	0.8415	0.9550	yes	N/A
Q6BZF8	DYL1_DEBHA	No assigned EC number	0.3678	0.8613	0.9560	yes	N/A
P63167	DYL1_HUMAN	No assigned EC number	0.5058	0.8415	0.9550	no	N/A
Q02647	DYL1_YEAST	No assigned EC number	0.3614	0.8217	0.9021	yes	N/A
O96860	DYL2_DROME	No assigned EC number	0.5058	0.8415	0.9550	yes	N/A
P63168	DYL1_MOUSE	No assigned EC number	0.5058	0.8415	0.9550	no	N/A
P63169	DYL1_RABIT	No assigned EC number	0.5058	0.8415	0.9550	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	2e-38
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	2e-35
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	2e-18

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  123 bits (310), Expect = 2e-38
 Identities = 43/82 (52%), Positives = 58/82 (70%)

Query: 18 PLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSF 77
           ++K+ DMP +MQ++ I  A  A E+ N   D+AA+IKKEF+ KYGP WHC+VG+ FGS+
Sbjct: 3  AVVKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSY 62

Query: 78 VTHDRSSFIYLYIGMDGILLFR 99
          VTH+   FIY YIG    LLF+
Sbjct: 63 VTHETKHFIYFYIGQLAFLLFK 84

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score =  115 bits (290), Expect = 2e-35
 Identities = 45/87 (51%), Positives = 59/87 (67%)

Query: 13 KDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQ 72
            D+  ++K+ DM  DMQQ+ I  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+
Sbjct: 2  MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGR 61

Query: 73 GFGSFVTHDRSSFIYLYIGMDGILLFR 99
           FGS+VTH+   FIY Y+G   ILLF+
Sbjct: 62 NFGSYVTHETKHFIYFYLGQVAILLFK 88

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 73.9 bits (181), Expect = 2e-18
 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 6   KKGGAAPKDDKAPL---IKSTDMPNDMQQEVITVAKAAYERCNNFAD---LAAYIKKEFE 59
           KK     +D K  L   ++++DMP  +Q    + A+   +      D   LA  +KKEF+
Sbjct: 21  KKKAKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFD 80

Query: 60  NKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFR 99
           + YGPAWHC+VG  FGS+VTH    F+Y  I    ILLF+
Sbjct: 81  SAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFK 120

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PTZ00059	90	dynein light chain; Provisional	100.0
KOG3430|consensus	90		100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.69
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	91.17

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=8.1e-42  Score=220.43  Aligned_cols=89  Identities=52%  Similarity=0.961  Sum_probs=86.1

Q ss_pred             CCCCCCceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeC
Q psy10106         12 PKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIG   91 (101)
Q Consensus        12 m~~~~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~   91 (101)
                      |++++ ++|+.+|||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||++||++++||||+++
T Consensus         2 m~~~~-~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~   80 (90)
T PTZ00059          2 MSDRK-AVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG   80 (90)
T ss_pred             CCCCc-cEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEEC
Confidence            66655 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEecC
Q psy10106         92 MDGILLFRHS  101 (101)
Q Consensus        92 ~~~illfKt~  101 (101)
                      +++|||||+|
T Consensus        81 ~~~vLlfK~~   90 (90)
T PTZ00059         81 QVAILLFKSG   90 (90)
T ss_pred             CEEEEEEecC
Confidence            9999999997

>KOG3430|consensus

Probab=100.00  E-value=6.9e-42  Score=218.45  Aligned_cols=89  Identities=53%  Similarity=1.008  Sum_probs=85.3

Q ss_pred             CCCCCCceEEeCCCCHHHHHHHHHHHHHHHhhCC-ChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEe
Q psy10106         12 PKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCN-NFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYI   90 (101)
Q Consensus        12 m~~~~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~-~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~   90 (101)
                      |.+.. ++|+.+|||++||++|+++|..|+++|+ ++++||..||++||++||++||||||++|||+|||++++||||++
T Consensus         1 ~~~~~-~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~   79 (90)
T KOG3430|consen    1 MLERK-AVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL   79 (90)
T ss_pred             CCCcc-ceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe
Confidence            45555 9999999999999999999999999999 789999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q psy10106         91 GMDGILLFRHS  101 (101)
Q Consensus        91 ~~~~illfKt~  101 (101)
                      |.++|||||++
T Consensus        80 g~l~illfK~~   90 (90)
T KOG3430|consen   80 GVLAILLFKCA   90 (90)
T ss_pred             ceEEEEEEecC
Confidence            99999999985

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=1.2e-40  Score=213.91  Aligned_cols=89  Identities=44%  Similarity=0.884  Sum_probs=83.9

Q ss_pred             CCCCCCceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeC
Q psy10106         12 PKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIG   91 (101)
Q Consensus        12 m~~~~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~   91 (101)
                      |++.+ ++|+.+|||++||++|+++|.+|++++++++|+|++||++||++|||+||||||++|||++||+++++|||+++
T Consensus         1 m~~~~-~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~   79 (89)
T PF01221_consen    1 MSENK-IVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIG   79 (89)
T ss_dssp             SGSCS-EEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEET
T ss_pred             CCCCc-cEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence            66666 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEecC
Q psy10106         92 MDGILLFRHS  101 (101)
Q Consensus        92 ~~~illfKt~  101 (101)
                      +++||||||+
T Consensus        80 ~~~~li~kt~   89 (89)
T PF01221_consen   80 NIAFLIFKTQ   89 (89)
T ss_dssp             TEEEEEEEE-
T ss_pred             CEEEEEEecC
Confidence            9999999996

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=3e-39  Score=219.81  Aligned_cols=86  Identities=38%  Similarity=0.738  Sum_probs=82.7

Q ss_pred             CCceEEeCCCCHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCC
Q psy10106         16 KAPLIKSTDMPNDMQQEVITVAKAAYERCN---NFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGM   92 (101)
Q Consensus        16 ~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~---~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~   92 (101)
                      .+++|+.+|||++||++|+++|.+|+++++   +++|||.+||++||++|||+||||||++|||+|||++++||||++|+
T Consensus        34 ~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig~  113 (128)
T PLN03058         34 LNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDK  113 (128)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEECC
Confidence            459999999999999999999999999974   67999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q psy10106         93 DGILLFRHS  101 (101)
Q Consensus        93 ~~illfKt~  101 (101)
                      ++|||||||
T Consensus       114 ~aiLLfKt~  122 (128)
T PLN03058        114 VYILLFKTA  122 (128)
T ss_pred             EEEEEEecc
Confidence            999999996

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.69  E-value=0.00064  Score=42.08  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=46.6

Q ss_pred             CChHHHHHHHHHhccccCCCceEEEEeC-CceeeEEecCCcEEEEEeCCEEEEEEe
Q psy10106         45 NNFADLAAYIKKEFENKYGPAWHCVVGQ-GFGSFVTHDRSSFIYLYIGMDGILLFR   99 (101)
Q Consensus        45 ~~~kdiA~~IK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~illfK   99 (101)
                      .+..++++.|.+.++++||+.+-||+++ +|....... ..|--...++...++|+
T Consensus        22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            5567899999999999999999999999 676665555 78888899999999996

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=91.17  E-value=2  Score=33.46  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHhccccCC-CceEEEEeC--------CceeeEEecCCcEEE-EEeCCEEEEEEec
Q psy10106         47 FADLAAYIKKEFENKYG-PAWHCVVGQ--------GFGSFVTHDRSSFIY-LYIGMDGILLFRH  100 (101)
Q Consensus        47 ~kdiA~~IK~~lD~~yg-~~WhcIVG~--------~Fgs~vth~~~~~i~-F~~~~~~illfKt  100 (101)
                      ..+.|..||+.||+-.. -.+-+||-.        .|.....+..+++|. |.-|+-.++||||
T Consensus       188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS  251 (345)
T PF05075_consen  188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS  251 (345)
T ss_pred             hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence            46899999999999653 368888822        222222456667766 5678999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		1e-22
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		1e-22
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		1e-22
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		2e-22
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		4e-22
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		4e-22
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		5e-22
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		5e-22
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		2e-21
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		2e-21
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		5e-21
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		1e-20
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		1e-15

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 7  VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 67 THETKHFIYFYLGQVAILLFK 87

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 10 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 69
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 70 THETKHFIYFYLGQVAILLFK 90

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 58/81 (71%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DMP D+QQ+ I  A  A E+ N   D+AA+IKKEF+ K+ P WHCVVG+ FGS+V
Sbjct: 7  VIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY YIG   +LLF+
Sbjct: 67 THETHHFIYFYIGQVAVLLFK 87

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 12 VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 71
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 72 THETKHFIYFYLGQVAILLFK 92

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  +MQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 7  VIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 67 THETRHFIYFYLGQVAILLFK 87

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  +MQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 7  VIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 67 THETRHFIYFYLGQVAILLFK 87

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  +MQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 9  VIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 68
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 69 THETRHFIYFYLGQVAILLFK 89

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  +MQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 9  VIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGSYV 68
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 69 THETRHFIYFYLGQVAILLFK 89

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  +MQQ+ +  A  A E+ N   D+AA+IKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 3  VIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYV 62
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 63 THETKHFIYFYLGQVAILLFK 83

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          +IK+ DM  +MQQ+ +  A  A E+ N   D+AA+IKKEF+ KY P WHC+VG+ FGS+V
Sbjct: 7  VIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYV 66
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH+   FIY Y+G   ILLF+
Sbjct: 67 THETKHFIYFYLGQVAILLFK 87

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQG--FGS 76
          +IK+ DM  DMQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+   FGS
Sbjct: 7  VIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNFGS 66
Query: 77 FVTHDRSSFIYLYIGMDGILLFR 99
          +VTH+   FIY Y+G   ILLF+
Sbjct: 67 YVTHETKHFIYFYLGQVAILLFK 89

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 19  LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
           ++K+ DM  +MQ + I  A  A ++ N   D+AA+IKKEF+ KY P WHCVVG+ FGS+V
Sbjct: 20  VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYV 79
Query: 79  THDRSSFIYLYIGMDGILLFR 99
           TH+  +FIY YIG   ILLF+
Sbjct: 80  THETKNFIYFYIGQVAILLFK 100

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 57/81 (70%)
Query: 19 LIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFV 78
          ++K++D+ + ++++++T++K A ++     D+A  +KK+ + KYG  WH +VG+ FGS+V
Sbjct: 15 IVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYV 74
Query: 79 THDRSSFIYLYIGMDGILLFR 99
          TH++  F+Y YIG    L+F+
Sbjct: 75 THEKGHFVYFYIGPLAFLVFK 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	6e-40
1yo3_A	102	Dynein light chain 1; structural genomics consorti	3e-39

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  126 bits (319), Expect = 6e-40
 Identities = 31/94 (32%), Positives = 63/94 (67%)

Query: 8   GGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWH 67
           G  + ++   P++K++D+ + ++++++T++K A ++     D+A  +KK+ + KYG  WH
Sbjct: 4   GSMSDENKSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWH 63

Query: 68  CVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRHS 101
            +VG+ FGS+VTH++  F+Y YIG    L+F+ +
Sbjct: 64  VIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  125 bits (315), Expect = 3e-39
 Identities = 42/98 (42%), Positives = 60/98 (61%)

Query: 3   PKPKKGGAAPKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKY 62
                  ++    +  ++K+ DM  +MQ + I  A  A ++ N   D+AA+IKKEF+ KY
Sbjct: 4   SHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKY 63

Query: 63  GPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILLFRH 100
            P WHCVVG+ FGS+VTH+  +FIY YIG   ILLF+ 
Sbjct: 64  DPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKS 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=2.1e-44  Score=231.17  Aligned_cols=89  Identities=52%  Similarity=0.937  Sum_probs=85.3

Q ss_pred             CCCCCCceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeC
Q psy10106         12 PKDDKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIG   91 (101)
Q Consensus        12 m~~~~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~   91 (101)
                      |++++ ++|+.+|||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||++||++++||||++|
T Consensus         1 m~~~k-~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g   79 (89)
T 3rjs_A            1 MADRK-AVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIG   79 (89)
T ss_dssp             --CCC-CEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEET
T ss_pred             CCCCc-cEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEEC
Confidence            66665 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEecC
Q psy10106         92 MDGILLFRHS  101 (101)
Q Consensus        92 ~~~illfKt~  101 (101)
                      +++|||||||
T Consensus        80 ~~~iLlfKtg   89 (89)
T 3rjs_A           80 QVAVLLFKSG   89 (89)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEecC
Confidence            9999999997

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-43  Score=226.72  Aligned_cols=86  Identities=35%  Similarity=0.843  Sum_probs=84.2

Q ss_pred             CCceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEE
Q psy10106         16 KAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGI   95 (101)
Q Consensus        16 ~~~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~i   95 (101)
                      ++++|+.+|||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||++||++++||||++|+++|
T Consensus        12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ai   91 (97)
T 4ds1_A           12 STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAF   91 (97)
T ss_dssp             CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEE
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecC
Q psy10106         96 LLFRHS  101 (101)
Q Consensus        96 llfKt~  101 (101)
                      ||||||
T Consensus        92 LlfKtg   97 (97)
T 4ds1_A           92 LVFKTA   97 (97)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999997

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=9.7e-42  Score=223.67  Aligned_cols=84  Identities=50%  Similarity=0.932  Sum_probs=83.1

Q ss_pred             ceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEE
Q psy10106         18 PLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILL   97 (101)
Q Consensus        18 ~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~ill   97 (101)
                      ++|+.+|||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||+|||++++||||++|+++|||
T Consensus        19 ~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~aiLl   98 (102)
T 1yo3_A           19 SVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILL   98 (102)
T ss_dssp             CCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTEEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecC
Q psy10106         98 FRHS  101 (101)
Q Consensus        98 fKt~  101 (101)
                      ||||
T Consensus        99 fKt~  102 (102)
T 1yo3_A           99 FKSG  102 (102)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	2e-36

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  116 bits (293), Expect = 2e-36
 Identities = 44/86 (51%), Positives = 59/86 (68%)

Query: 15  DKAPLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGF 74
           D+  +IK+ DM  +MQQ+ +  A  A E+ N   D+AAYIKKEF+ KY P WHC+VG+ F
Sbjct: 1   DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNF 60

Query: 75  GSFVTHDRSSFIYLYIGMDGILLFRH 100
           GS+VTH+   FIY Y+G   ILLF+ 
Sbjct: 61  GSYVTHETRHFIYFYLGQVAILLFKS 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.7e-43  Score=223.00  Aligned_cols=84  Identities=51%  Similarity=0.987  Sum_probs=83.3

Q ss_pred             ceEEeCCCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHhccccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEE
Q psy10106         18 PLIKSTDMPNDMQQEVITVAKAAYERCNNFADLAAYIKKEFENKYGPAWHCVVGQGFGSFVTHDRSSFIYLYIGMDGILL   97 (101)
Q Consensus        18 ~~I~~sdM~~~mq~~~~~~a~~a~~~~~~~kdiA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~~ill   97 (101)
                      ++|+.+|||++||++|+++|.+|+++|++++|+|++||++||++|||+||||||++|||++||++++||||++|+++|||
T Consensus         4 ~vik~~DM~~em~~~a~~~~~~al~~~~~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~~~~Ll   83 (87)
T d3e2ba1           4 AVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILL   83 (87)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETTEEEEE
T ss_pred             ceEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECCEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecC
Q psy10106         98 FRHS  101 (101)
Q Consensus        98 fKt~  101 (101)
                      ||||
T Consensus        84 ~Ktg   87 (87)
T d3e2ba1          84 FKSG   87 (87)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9998