Psyllid ID: psy10147

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSSPDVEPVSRRPTVPPPQPPPSAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHccccccccccccccccHHHHHccccHHHEEEHHHcccHHHHHHHHHcHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHcccHHHHcccccccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msspdvepvsrrptvpppqpppsakmvtitngpRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPtymssylganshslsftamPYVLNSLFCIVAghfadnlvshsWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSafnsagflashadiapnhagVTFAISNTL
Flexible Loop (DISEMBL)
msspdvepvsrrptvpppqpppsaKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL
Low Complexity Region (SEG)
MSSPDVEpvsrrptvpppqpppsAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL
Disordered region (IsUnstruct)
**************************VTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAI****
Disordered Region (DISOPRED)
*SSPDVE***************************WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL
Disordered Region (DISEMBL)
**********************SAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL
Disordered Region (DISPRO)
***PDVEPVSRRPTVPPPQPP********TNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPDVEPVSRRPTVPPPQPPPSAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q8GX78	541	Probable anion transporte	yes	N/A	0.927	0.306	0.333	1e-21
Q652N5	591	Probable anion transporte	yes	N/A	0.804	0.243	0.351	2e-21
Q9SDI4	529	Probable anion transporte	no	N/A	0.804	0.272	0.371	2e-21
Q9NRA2	495	Sialin OS=Homo sapiens GN	yes	N/A	0.810	0.292	0.390	7e-21
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	N/A	0.810	0.292	0.397	2e-20
Q8BN82	495	Sialin OS=Mus musculus GN	yes	N/A	0.810	0.292	0.390	1e-19
O82390	512	Sodium-dependent phosphat	no	N/A	0.804	0.281	0.351	4e-19
Q8W0H5	519	Probable anion transporte	no	N/A	0.815	0.281	0.306	3e-17
Q53P54	428	Probable anion transporte	no	N/A	0.927	0.387	0.296	2e-16
Q53WP9	535	Probable anion transporte	no	N/A	0.877	0.293	0.298	9e-16

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%)

Query: 13  PTVPPPQPPPSAKMVTITNGPR-------WISFISHWSLWSVYIAHFAMNWSTYIIMQWL 65
           P   P       K++   + PR       W   +S   +W++ I+HF  NW T+I++ W+
Sbjct: 314 PKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLTWM 373

Query: 66  PTYMSSYLGAN-SHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLI 124
           PTY +  L  N + S     +P++  ++F  + G  AD LVS   ++  VR++M SIG +
Sbjct: 374 PTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIGFL 433

Query: 125 GPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT 178
           GPA FL     V     AV+    S G  AF+ +G  ++H DI P +AGV   +SNT
Sbjct: 434 GPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNT 490

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%)

Query: 35  WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGAN-SHSLSFTAMPYVLNSLF 93
           W   +S   +W++ ++HF  NW T+I++ W+PTY +  L  N + S     +P++  ++F
Sbjct: 393 WKLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIF 452

Query: 94  CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLS 150
             + G  AD LV    ++  VR++M SIG +GPA+FL     V     AV+    S G  
Sbjct: 453 ANIGGWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSD 512

Query: 151 AFNSAGFLASHADIAPNHAGVTFAISNT 178
           AF+ +G  ++H DI P +AGV   +SNT
Sbjct: 513 AFSQSGLYSNHQDIGPRYAGVLLGLSNT 540

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 4/148 (2%)

Query: 35  WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGAN-SHSLSFTAMPYVLNSLF 93
           W   +S   +W++ ++HF  NW T+I++ W+PTY +  L  N + S  F  +P++  ++ 
Sbjct: 331 WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVS 390

Query: 94  CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLS 150
               G  AD LVS   +V TVR++M SIG +GPA FL     +D+   AV+    S G  
Sbjct: 391 ANFGGWIADTLVSRGLSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTD 450

Query: 151 AFNSAGFLASHADIAPNHAGVTFAISNT 178
           AF+ +G  ++H DI P +AGV   +SNT
Sbjct: 451 AFSQSGLYSNHQDIGPRYAGVLLGLSNT 478

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9NRA2|S17A5_HUMAN Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2

 Score =  100 bits (248), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 6/151 (3%)

Query: 35  WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
           W+  +    LW++ +AHF+ NW+ Y ++  LPTYM   L  N     F +++PY+ + L 
Sbjct: 282 WVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLGSWLC 341

Query: 94  CIVAGHFADNLVSH-SWTVLTVRRLMTSIGLIGPAVFLIF--FCAVDNLLFA--VIISMG 148
            I++G  ADNL +  +++ L VRR+ + IG+IGPAVFL+   F   D  L    + IS  
Sbjct: 342 MILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGFIGCDYSLAVAFLTISTT 401

Query: 149 LSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
           L  F S+GF  +H DIAP++AG+   I+NT 
Sbjct: 402 LGGFCSSGFSINHLDIAPSYAGILLGITNTF 432

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 6/151 (3%)

Query: 35  WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
           WI  +    LW++ +AHF+ NW+ Y ++  LPTYM   L  N     F +A+PY+   L 
Sbjct: 282 WIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCWLC 341

Query: 94  CIVAGHFADNLVSH-SWTVLTVRRLMTSIGLIGPAVFLIF--FCAVDNLLFA--VIISMG 148
            I++G  ADNL +  +++ L VRR+ + IG+IGPA+FL+   F   D  L    + IS  
Sbjct: 342 MILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLTISTT 401

Query: 149 LSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
           L  F S+GF  +H DIAP++AG+   I+NT 
Sbjct: 402 LGGFCSSGFSINHLDIAPSYAGILLGITNTF 432

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

>sp|Q8BN82|S17A5_MOUSE Sialin OS=Mus musculus GN=Slc17a5 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 6/151 (3%)

Query: 35  WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
           W S +    LW++ +AHF+ NWS Y ++  LPTYM   L  N     F +A+PY    L 
Sbjct: 282 WGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCWLC 341

Query: 94  CIVAGHFADNL-VSHSWTVLTVRRLMTSIGLIGPAVFLIF--FCAVDNLLFA--VIISMG 148
            I+ G  AD L V  +++ ++VRR+ + +G++GPAVFL+   F   D  L    + IS  
Sbjct: 342 MILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYSLAVAFLTISTT 401

Query: 149 LSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
           L  F S+GF  +H DIAP++AG+   I+NT 
Sbjct: 402 LGGFASSGFSINHLDIAPSYAGILLGITNTF 432

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes.

Mus musculus (taxid: 10090)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 4/148 (2%)

Query: 35  WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGAN-SHSLSFTAMPYVLNSLF 93
           W   +S   +W++   HF  NW T+I++ W+PTY    L  N   S   +  P++  ++ 
Sbjct: 314 WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAIS 373

Query: 94  CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLS 150
               G  AD LVS  ++V  VR++M +IG +GPA FL     +D+   AV+    S G  
Sbjct: 374 ANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTD 433

Query: 151 AFNSAGFLASHADIAPNHAGVTFAISNT 178
           AF+ +G  ++H DIAP ++GV   +SNT
Sbjct: 434 AFSQSGLYSNHQDIAPRYSGVLLGLSNT 461

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 85/150 (56%), Gaps = 4/150 (2%)

Query: 33  PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNS 91
           P +   +S W  W++  A+   +W  ++I+ W+P Y  +    N    + F+A+P+V+ +
Sbjct: 314 PPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMA 373

Query: 92  LFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFA---VIISMG 148
           +   VAG  +D L+ +  ++   R++M +IG +GP V L+   A  + + A   + I++G
Sbjct: 374 VLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVG 433

Query: 149 LSAFNSAGFLASHADIAPNHAGVTFAISNT 178
           L +F  +GFL +  +IAP +AGV   +SNT
Sbjct: 434 LKSFGHSGFLVNLQEIAPQYAGVLHGMSNT 463

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53P54|PHT46_ORYSJ Probable anion transporter 6 OS=Oryza sativa subsp. japonica GN=PHT4;6 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)

Query: 13  PTVPPPQPPPSAKMVTITNG---PR-----WISFISHWSLWSVYIAHFAMNWSTYIIMQW 64
           P    P+     KM   T G   PR     W   +    +W++ + +F  +++ Y++M W
Sbjct: 188 PRTDLPKVASKDKMKVQTGGIMAPRTVKIPWARILFSLPIWAIVVNNFTFHYALYVLMNW 247

Query: 65  LPTYMSSYLGANSHSLSFTAM-PYVLNSLFCIVAGHFADNLVSHS-WTVLTVRRLMTSIG 122
           LPTY    L  +   + F+ M PY+   LF  + G  AD+L++    +V   R+L+ ++G
Sbjct: 248 LPTYFKLGLQLSLQDMGFSKMLPYLNMFLFSNIGGVLADHLITRKILSVTKTRKLLNTVG 307

Query: 123 LIGPAVFLI---FFCAVDNLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT 178
            +  A+ L+    F      +F   +S+G  A   AGF  +H D+AP  AG+   ISNT
Sbjct: 308 FVVSAIALMALPLFRTPSGAIFCSSVSLGFLALGRAGFAVNHMDVAPKFAGIVMGISNT 366

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 4/161 (2%)

Query: 23  SAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS- 81
           SA  +  +  P     +S   +W++ +A+   NW  ++++ W+P Y  +    N    + 
Sbjct: 324 SASKIQGSKFPSLREILSKIEMWAIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAAW 383

Query: 82  FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLF 141
           F+A+P+ + +L   VAG  AD L+   ++V  VR++M SIG IGP V L+          
Sbjct: 384 FSAIPWAVMALSGYVAGASADFLIKSGFSVALVRKIMQSIGFIGPGVSLLCLRFAQTPSV 443

Query: 142 AVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
           A +   I++ LS+F+ AG+  +  DIAP +AG    ++N +
Sbjct: 444 AAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLHGLTNGI 484

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
242021014	400	conserved hypothetical protein [Pediculu	0.815	0.365	0.724	1e-55
443710431	409	hypothetical protein CAPTEDRAFT_173625 [	0.921	0.403	0.616	1e-54
350427489	406	PREDICTED: sodium-dependent phosphate tr	0.854	0.376	0.692	2e-54
383863548	406	PREDICTED: sodium-dependent phosphate tr	0.854	0.376	0.679	2e-54
340727901	406	PREDICTED: sodium-dependent phosphate tr	0.854	0.376	0.685	6e-54
48101741	406	PREDICTED: sialin-like [Apis mellifera]	0.815	0.359	0.704	7e-54
156547110	406	PREDICTED: sodium-dependent phosphate tr	0.938	0.413	0.614	9e-54
380016728	406	PREDICTED: probable anion transporter 2,	0.815	0.359	0.697	1e-53
307199621	258	Sialin [Harpegnathos saltator]	0.938	0.651	0.614	1e-53
332023424	406	Sodium-dependent phosphate transport pro	0.815	0.359	0.691	2e-53

>gi|242021014|ref|XP_002430942.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516160|gb|EEB18204.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/149 (72%), Positives = 125/149 (83%), Gaps = 3/149 (2%)

Query: 34  RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLF 93
           RW  F+ HW LW++YIAHFAMNWS YIIMQWLPTY+S  LGAN  S+S TAMPY++NSL 
Sbjct: 201 RWSEFLRHWPLWALYIAHFAMNWSNYIIMQWLPTYLSRNLGANKESISLTAMPYIVNSLV 260

Query: 94  CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLS 150
            IVAGHFAD L++  WTVL+VRRLMTSIGL+GP +FL+ FCAVDNLL AVI   ISMGL 
Sbjct: 261 GIVAGHFADKLINRRWTVLSVRRLMTSIGLLGPGIFLLAFCAVDNLLAAVIIVCISMGLC 320

Query: 151 AFNSAGFLASHADIAPNHAGVTFAISNTL 179
           A NSAG L+++ADIAPNHAG+TFAISNTL
Sbjct: 321 ACNSAGHLSNYADIAPNHAGLTFAISNTL 349

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443710431|gb|ELU04684.1| hypothetical protein CAPTEDRAFT_173625 [Capitella teleta]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 133/172 (77%), Gaps = 7/172 (4%)

Query: 11  RRPTVPPPQPPPSAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMS 70
           R PT      PP       ++  RW  F+S+W LWSVYIAHF+MNWS YI+MQWLPTYMS
Sbjct: 191 RGPTEEEFIQPPKVN----SSNVRWTEFLSNWPLWSVYIAHFSMNWSNYIVMQWLPTYMS 246

Query: 71  SYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFL 130
             LGA+ H + FTA+PY++NSL  + AGHFAD L++  WTVL+VRRLMT+IGL+GP +F+
Sbjct: 247 RNLGADKHDIMFTAVPYIMNSLIGVGAGHFADKLIAQKWTVLSVRRLMTAIGLLGPGLFM 306

Query: 131 IFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
           +FF AV+NLL AVI   ISMGLSA NS+G L++HADIAPN+AG+TFA+SNTL
Sbjct: 307 LFFSAVNNLLLAVIFVSISMGLSACNSSGHLSNHADIAPNYAGITFAVSNTL 358

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|350427489|ref|XP_003494774.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Bombus impatiens]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/156 (69%), Positives = 124/156 (79%), Gaps = 3/156 (1%)

Query: 27  VTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMP 86
           VT     RW  FISHW LW++YIAHFAMNWS YIIMQWLPTY++  L AN  S+SFTA P
Sbjct: 200 VTQNRNLRWTEFISHWPLWALYIAHFAMNWSNYIIMQWLPTYLARNLSANKESISFTAFP 259

Query: 87  YVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI-- 144
           Y++NSL  IVAGH ADNL+   W VL+VRRLMT+IGLIGP  FL+ FCAVDNLL AVI  
Sbjct: 260 YIVNSLVGIVAGHSADNLIQKRWPVLSVRRLMTNIGLIGPGAFLLAFCAVDNLLAAVIFV 319

Query: 145 -ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
            ISMGL A NSAG L++HADIAPNHAG+TFA+SNT+
Sbjct: 320 SISMGLCACNSAGHLSNHADIAPNHAGITFAVSNTI 355

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863548|ref|XP_003707242.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Megachile rotundata]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/156 (67%), Positives = 125/156 (80%), Gaps = 3/156 (1%)

Query: 27  VTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMP 86
           VT     RW  FISHW LW++YIAHFAMNWS YIIMQWLPTY++  L AN  S+S TA+P
Sbjct: 200 VTQNRSLRWTEFISHWPLWALYIAHFAMNWSNYIIMQWLPTYLARNLSANKESISLTALP 259

Query: 87  YVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI-- 144
           Y++NSL  IVAGH ADNL+   W+VL+VRRLMT+IGL+GP  FL+ FCAVDNLL AVI  
Sbjct: 260 YIVNSLVGIVAGHSADNLIQRRWSVLSVRRLMTNIGLVGPGAFLLAFCAVDNLLAAVIFV 319

Query: 145 -ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
            ISMGL A NSAG L++HADIAPNHAG+TFA+SNT+
Sbjct: 320 SISMGLCACNSAGHLSNHADIAPNHAGITFAVSNTI 355

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727901|ref|XP_003402272.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Bombus terrestris]

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 123/156 (78%), Gaps = 3/156 (1%)

Query: 27  VTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMP 86
           VT     RW  FISHW LW++YIAHFAMNWS YIIMQWLPTY++  L  N  S+SFTA P
Sbjct: 200 VTQNRNLRWTEFISHWPLWALYIAHFAMNWSNYIIMQWLPTYLARNLSVNKESISFTAFP 259

Query: 87  YVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI-- 144
           Y++NSL  IVAGH ADNL+   W VL+VRRLMT+IGLIGP  FL+ FCAVDNLL AVI  
Sbjct: 260 YIVNSLVGIVAGHSADNLIQKRWPVLSVRRLMTNIGLIGPGAFLLAFCAVDNLLAAVIFV 319

Query: 145 -ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
            ISMGL A NSAG L++HADIAPNHAG+TFA+SNT+
Sbjct: 320 SISMGLCACNSAGHLSNHADIAPNHAGITFAVSNTI 355

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48101741|ref|XP_392708.1| PREDICTED: sialin-like [Apis mellifera]

 Score =  215 bits (547), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 122/149 (81%), Gaps = 3/149 (2%)

Query: 34  RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLF 93
           RW  FISHW LW++YIAHFAMNWS YIIMQWLPTY++  L AN  S+S TA+PY++NSL 
Sbjct: 207 RWTEFISHWPLWALYIAHFAMNWSNYIIMQWLPTYLARNLSANKESISLTALPYIVNSLV 266

Query: 94  CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLS 150
            IVAGH ADNL+   W VL+VRRLMT+IGLIGP  FL+ FCAVDNLL AVI   ISMGL 
Sbjct: 267 GIVAGHSADNLIQKRWPVLSVRRLMTNIGLIGPGAFLLAFCAVDNLLAAVIFVSISMGLC 326

Query: 151 AFNSAGFLASHADIAPNHAGVTFAISNTL 179
           A NSAG L++HADIAPNHAG+TFA+SNT+
Sbjct: 327 ACNSAGHLSNHADIAPNHAGITFAVSNTI 355

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547110|ref|XP_001602716.1| PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic-like [Nasonia vitripennis]

 Score =  214 bits (546), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 128/171 (74%), Gaps = 3/171 (1%)

Query: 12  RPTVPPPQPPPSAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSS 71
           + T    + P     V+     RW  FI+HW LW++YIAHFAMNWS YIIMQWLPTY+S 
Sbjct: 185 KETNSQDEIPLFLPKVSQNRALRWTEFITHWPLWALYIAHFAMNWSNYIIMQWLPTYLSR 244

Query: 72  YLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLI 131
            L AN  S+S TA+PY++NSL  I AGH ADNL+   W+VL+VRRLMT+IGLIGP  FL+
Sbjct: 245 NLSANKESISLTALPYIVNSLIGIAAGHSADNLIQKRWSVLSVRRLMTNIGLIGPGAFLL 304

Query: 132 FFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
            FCAVDNLL AVI   ISMGL A NS+G L++HAD+APNHAG+TFA+SNT+
Sbjct: 305 AFCAVDNLLLAVIFVSISMGLCACNSSGHLSNHADVAPNHAGITFAVSNTI 355

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016728|ref|XP_003692327.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Apis florea]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 122/149 (81%), Gaps = 3/149 (2%)

Query: 34  RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLF 93
           RW  FISHW LW++YIAHFAMNWS YIIMQWLPTY++  L AN  S+S TA+PY++NSL 
Sbjct: 207 RWTEFISHWPLWALYIAHFAMNWSNYIIMQWLPTYLARNLSANKESISLTALPYIVNSLV 266

Query: 94  CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLS 150
            IVAGH ADNL+   W +L+VRRLMT+IGLIGP  FL+ FCAVDNLL AVI   ISMGL 
Sbjct: 267 GIVAGHSADNLIQKRWPILSVRRLMTNIGLIGPGAFLLAFCAVDNLLAAVIFVSISMGLC 326

Query: 151 AFNSAGFLASHADIAPNHAGVTFAISNTL 179
           A NSAG L++HADIAPNHAG+TFA+SNT+
Sbjct: 327 ACNSAGHLSNHADIAPNHAGITFAVSNTI 355

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199621|gb|EFN80175.1| Sialin [Harpegnathos saltator]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 129/171 (75%), Gaps = 3/171 (1%)

Query: 12  RPTVPPPQPPPSAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSS 71
           + T    + P     VT     RW  FI+HW LW++YIAHFAMNW+ YIIMQWLPTY++ 
Sbjct: 30  QETNSQDEIPLFVPKVTQNRNLRWTEFIAHWPLWALYIAHFAMNWTNYIIMQWLPTYLAR 89

Query: 72  YLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLI 131
            L A+  S+S TA+PY++NSL  IVAGH AD+L+   W+VL+VRRLMT+IGL+GP  FL+
Sbjct: 90  NLSADKRSISLTALPYIVNSLIGIVAGHSADSLIQKRWSVLSVRRLMTNIGLVGPGAFLL 149

Query: 132 FFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNTL 179
            FCAVDNLL AVI   ISMGL A NSAG L++HADIAPNHAGVTFA+SNT+
Sbjct: 150 AFCAVDNLLAAVIFVSISMGLCACNSAGHLSNHADIAPNHAGVTFAVSNTI 200

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023424|gb|EGI63667.1| Sodium-dependent phosphate transport protein 1, chloroplastic [Acromyrmex echinatior]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 123/149 (82%), Gaps = 3/149 (2%)

Query: 34  RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLF 93
           RW  FI+HW LW++YIAHFAMNWS YIIMQWLPTY++  L AN+ S+S TA+PY++NSL 
Sbjct: 207 RWTEFIAHWPLWALYIAHFAMNWSNYIIMQWLPTYLARNLSANTESISLTALPYIVNSLI 266

Query: 94  CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLS 150
            IVAGH AD L+   W+VL+VRRLMT+IGLIGP  FL+ FCAVDNLL AVI   ISMGL 
Sbjct: 267 GIVAGHSADTLIQKRWSVLSVRRLMTNIGLIGPGAFLLAFCAVDNLLAAVIFVSISMGLC 326

Query: 151 AFNSAGFLASHADIAPNHAGVTFAISNTL 179
           A NSAG L++HADIAPNHAG+TFA+SNT+
Sbjct: 327 ACNSAGHLSNHADIAPNHAGITFAVSNTI 355

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.798	0.288	0.410	1.5e-23
RGD|1311388	495	Slc17a5 "solute carrier family	0.804	0.290	0.406	2e-23
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.804	0.290	0.406	5.4e-23
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.804	0.290	0.4	1.5e-22
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.804	0.289	0.406	1.5e-22
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.804	0.266	0.364	2e-22
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.804	0.290	0.4	2.5e-22
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.804	0.281	0.351	3.5e-21
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.804	0.297	0.36	2.2e-20
ZFIN|ZDB-GENE-060929-1158	489	slc17a5 "solute carrier family	0.804	0.294	0.346	3.7e-19

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 276 (102.2 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 62/151 (41%), Positives = 91/151 (60%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
             W+  +    LW++ +AHF+ NW+ Y ++  LPTYM   L  N     F +++PY L S  
Sbjct:   282 WVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPY-LGSWL 340

Query:    94 C-IVAGHFADNL-VSHSWTVLTVRRLMTSIGLIGPAVFLIF--FCAVD-NLLFAVI-ISM 147
             C I++G  ADNL    +++ L VRR+ + IG+IGPAVFL+   F   D +L  A + IS 
Sbjct:   341 CMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGFIGCDYSLAVAFLTIST 400

Query:   148 GLSAFNSAGFLASHADIAPNHAGVTFAISNT 178
              L  F S+GF  +H DIAP++AG+   I+NT
Sbjct:   401 TLGGFCSSGFSINHLDIAPSYAGILLGITNT 431

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 2.0e-23, P = 2.0e-23
 Identities = 61/150 (40%), Positives = 90/150 (60%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
             W+S +    LW++ +AHF+ NW+ Y ++  LPTYM   L  N     F +A+PY    L 
Sbjct:   282 WVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCWLC 341

Query:    94 CIVAGHFADNL-VSHSWTVLTVRRLMTSIGLIGPAVFLIF--FCAVD-NLLFAVI-ISMG 148
              IV G  AD L V  +++ ++VRR+ + IG++GPAVFL+   F   D +L  A + IS  
Sbjct:   342 MIVCGQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYSLAVAFLTISTT 401

Query:   149 LSAFNSAGFLASHADIAPNHAGVTFAISNT 178
             L  F S+GF  +H DIAP++AG+   I+NT
Sbjct:   402 LGGFASSGFSINHLDIAPSYAGILLGITNT 431

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 5.4e-23, P = 5.4e-23
 Identities = 61/150 (40%), Positives = 91/150 (60%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
             WI  +    LW++ +AHF+ NW+ Y ++  LPTYM   L  N     F +A+PY+   L 
Sbjct:   282 WIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCWLC 341

Query:    94 CIVAGHFADNLVSH-SWTVLTVRRLMTSIGLIGPAVFLIF--FCAVD-NLLFAVI-ISMG 148
              I++G  ADNL +  +++ L VRR+ + IG+IGPA+FL+   F   D +L  A + IS  
Sbjct:   342 MILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLTISTT 401

Query:   149 LSAFNSAGFLASHADIAPNHAGVTFAISNT 178
             L  F S+GF  +H DIAP++AG+   I+NT
Sbjct:   402 LGGFCSSGFSINHLDIAPSYAGILLGITNT 431

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 60/150 (40%), Positives = 89/150 (59%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
             W S +    LW++ +AHF+ NWS Y ++  LPTYM   L  N     F +A+PY    L 
Sbjct:   282 WGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCWLC 341

Query:    94 CIVAGHFADNL-VSHSWTVLTVRRLMTSIGLIGPAVFLIF--FCAVD-NLLFAVI-ISMG 148
              I+ G  AD L V  +++ ++VRR+ + +G++GPAVFL+   F   D +L  A + IS  
Sbjct:   342 MILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYSLAVAFLTISTT 401

Query:   149 LSAFNSAGFLASHADIAPNHAGVTFAISNT 178
             L  F S+GF  +H DIAP++AG+   I+NT
Sbjct:   402 LGGFASSGFSINHLDIAPSYAGILLGITNT 431

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 267 (99.0 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 61/150 (40%), Positives = 88/150 (58%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
             WI  +    LW++ +AHF+ NW+ Y ++  LPTYM   L  N     F +A+PY    + 
Sbjct:   284 WIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYFGCWVC 343

Query:    94 CIVAGHFADNL-VSHSWTVLTVRRLMTSIGLIGPAVFLIF--FCAVD-NLLFAVI-ISMG 148
              I++G  ADNL    +++ L VRR+ + IG+ GPAVFL+   F   D +L  A + IS  
Sbjct:   344 MILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYSLAVAFLTISTT 403

Query:   149 LSAFNSAGFLASHADIAPNHAGVTFAISNT 178
             L  F S+GF  SH DIAP++AG+   I+NT
Sbjct:   404 LGGFCSSGFSISHLDIAPSYAGILLGITNT 433

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 54/148 (36%), Positives = 83/148 (56%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGAN-SHSLSFTAMPYVLNSLF 93
             W   +S   +W++ I+HF  NW T+I++ W+PTY +  L  N + S     +P++  ++F
Sbjct:   343 WKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVF 402

Query:    94 CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVII---SMGLS 150
               + G  AD LVS   ++  VR++M SIG +GPA FL     V     AV+    S G  
Sbjct:   403 ANIGGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSD 462

Query:   151 AFNSAGFLASHADIAPNHAGVTFAISNT 178
             AF+ +G  ++H DI P +AGV   +SNT
Sbjct:   463 AFSQSGLYSNHQDIGPRYAGVLLGLSNT 490

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 265 (98.3 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 60/150 (40%), Positives = 86/150 (57%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
             WI  +    LW++ +AHF+ NW+ Y ++  LPTYM   L  N       +A+PY    L 
Sbjct:   282 WIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFGCWLC 341

Query:    94 CIVAGHFADNL-VSHSWTVLTVRRLMTSIGLIGPAVFLIF--FCAVDNLLFAVI--ISMG 148
              I++G  ADNL    +++ + VRR+ + IG+IGPAVFL+   F   D  L  V   IS  
Sbjct:   342 MILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLTISTT 401

Query:   149 LSAFNSAGFLASHADIAPNHAGVTFAISNT 178
             L  F S+GF  +H DIAP++AG+   I+NT
Sbjct:   402 LGGFCSSGFSINHLDIAPSYAGILLGITNT 431

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 3.5e-21, P = 3.5e-21
 Identities = 52/148 (35%), Positives = 81/148 (54%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGAN-SHSLSFTAMPYVLNSLF 93
             W   +S   +W++   HF  NW T+I++ W+PTY    L  N   S   +  P++  ++ 
Sbjct:   314 WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAIS 373

Query:    94 CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVII---SMGLS 150
                 G  AD LVS  ++V  VR++M +IG +GPA FL     +D+   AV+    S G  
Sbjct:   374 ANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTD 433

Query:   151 AFNSAGFLASHADIAPNHAGVTFAISNT 178
             AF+ +G  ++H DIAP ++GV   +SNT
Sbjct:   434 AFSQSGLYSNHQDIAPRYSGVLLGLSNT 461

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 247 (92.0 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 54/150 (36%), Positives = 87/150 (58%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
             W   +    LW++ +AHF+ NW+ Y ++  LPTYM   L  ++    F +A+PY    L 
Sbjct:   271 WRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYFGCWLC 330

Query:    94 CIVAGHFADNL-VSHSWTVLTVRRLMTSIGLIGPAVFLI---FF-CAVDNLLFAVIISMG 148
              I++G  AD+L    +++ + VR+  T IG+IGPAVFL+   F  C  +  +  V IS  
Sbjct:   331 IILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYELAVAFVTISTT 390

Query:   149 LSAFNSAGFLASHADIAPNHAGVTFAISNT 178
             L  F ++G+  +H DIAP++AG+   I+N+
Sbjct:   391 LGGFCTSGYSINHLDIAPSYAGILLGITNS 420

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

ZFIN|ZDB-GENE-060929-1158 slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Danio rerio (taxid:7955)]

 Score = 236 (88.1 bits), Expect = 3.7e-19, P = 3.7e-19
 Identities = 52/150 (34%), Positives = 83/150 (55%)

Query:    35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGAN-SHSLSFTAMPYVLNSLF 93
             W S      LW++ +AHF+ NW+ Y ++  LPTYM+  LG +   +   +A+PY+   L 
Sbjct:   278 WTSIFKSMPLWAIVVAHFSYNWTFYTLLTLLPTYMNDVLGFSIQQNGMLSALPYLGCWLL 337

Query:    94 CIVAGHFADNLVSHS-WTVLTVRRLMTSIGLIGPAVFLIFFCAVD-NLLFAVI---ISMG 148
              ++ G  AD L     +  + VR+  T +G+ GPAVFL+       N + AV    IS  
Sbjct:   338 ALLGGQLADLLRERFLFRTVIVRKAFTVVGMAGPAVFLVAAGYTGCNYILAVAFLTISSS 397

Query:   149 LSAFNSAGFLASHADIAPNHAGVTFAISNT 178
             L   +++GF  +H DIAP++AG+   I+N+
Sbjct:   398 LGGISASGFNINHLDIAPSYAGILLGITNS 427

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	179
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	1e-14
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.004

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 6/149 (4%)

Query: 35  WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLF 93
             +      +W+++ A F   W   I+  +LPT++S  L  +       +++PY+   L 
Sbjct: 254 IKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313

Query: 94  CIVAGHFADNLVSHSWTVLT-VRRLMTSIGLIGPAVFLIFF----CAVDNLLFAVIISMG 148
            I AG+ AD L S     LT  R++   IG +GP +F         A    +  + ++  
Sbjct: 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANA 373

Query: 149 LSAFNSAGFLASHADIAPNHAGVTFAISN 177
           +S+   AG L +  D+AP   G    I+ 
Sbjct: 374 VSSGPLAGVLINSLDLAPRFLGFIKGITG 402

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 44  LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANS-HSLSFTAMPYVLNSLFCIVAGHFAD 102
           +W + +  F +N      + W PTY+    G +   +    ++P ++  +  I+ G  +D
Sbjct: 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSD 276

Query: 103 NLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAF 152
            L+    + L   R    I  +     L+F     N+ +A +  + L  F
Sbjct: 277 LLLRRGKS-LVFARKTAIIAGLV-LSLLMFATNYVNIPYAALALVALGFF 324

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 5/146 (3%)

Query: 35  WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLG-ANSHSLSFTAMPYVLNSLF 93
            +       L  + +A F +++  Y ++ +LP Y+   LG + + +    ++  +   L 
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILG 227

Query: 94  CIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVIISMGLSAFN 153
            ++ G  +D L      +L    +   +  +G  +  +       L+  +++  GL    
Sbjct: 228 ALLGGLLSDRLGRRRLLLL----IGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283

Query: 154 SAGFLASHADIAPNHAGVTFAISNTL 179
            A    +     P   G    + NT 
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTF 309

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG2532|consensus	466		99.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.73
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.72
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.62
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.54
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
PLN00028	476	nitrate transmembrane transporter; Provisional	99.5
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.5
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.5
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.47
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
PRK11663	434	regulatory protein UhpC; Provisional	99.42
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.42
PRK10133	438	L-fucose transporter; Provisional	99.37
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.34
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.34
TIGR00900	365	2A0121 H+ Antiporter protein.	99.33
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.32
TIGR00901	356	2A0125 AmpG-related permease.	99.29
KOG2533|consensus	495		99.29
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.29
KOG4686|consensus	459		99.28
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.28
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.27
PRK03545	390	putative arabinose transporter; Provisional	99.27
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.27
PRK10054	395	putative transporter; Provisional	99.26
PRK09952	438	shikimate transporter; Provisional	99.26
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.25
PRK10642	490	proline/glycine betaine transporter; Provisional	99.25
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.24
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.23
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.23
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.23
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.22
PRK03699	394	putative transporter; Provisional	99.2
PRK15075	434	citrate-proton symporter; Provisional	99.2
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.19
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.19
PRK09705	393	cynX putative cyanate transporter; Provisional	99.18
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.18
TIGR00895	398	2A0115 benzoate transport.	99.18
PRK11010	491	ampG muropeptide transporter; Validated	99.17
PRK15011	393	sugar efflux transporter B; Provisional	99.16
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.15
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.14
PRK10489	417	enterobactin exporter EntS; Provisional	99.14
PRK11043	401	putative transporter; Provisional	99.13
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.13
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.13
TIGR00891	405	2A0112 putative sialic acid transporter.	99.12
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.1
PRK12307	426	putative sialic acid transporter; Provisional	99.09
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.09
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.08
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.07
PLN00028	476	nitrate transmembrane transporter; Provisional	99.06
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.06
PRK10504	471	putative transporter; Provisional	99.04
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.03
PRK11663	434	regulatory protein UhpC; Provisional	99.03
PRK10504	471	putative transporter; Provisional	99.02
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.01
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.01
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.0
PRK03633	381	putative MFS family transporter protein; Provision	99.0
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.99
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.99
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.98
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.97
PRK09528	420	lacY galactoside permease; Reviewed	98.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.96
TIGR00891	405	2A0112 putative sialic acid transporter.	98.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.95
PRK09874	408	drug efflux system protein MdtG; Provisional	98.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.94
PRK12382	392	putative transporter; Provisional	98.94
PRK03699	394	putative transporter; Provisional	98.94
PRK09528	420	lacY galactoside permease; Reviewed	98.93
PRK09848	448	glucuronide transporter; Provisional	98.93
PRK03633	381	putative MFS family transporter protein; Provision	98.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.92
PF13347	428	MFS_2: MFS/sugar transport protein	98.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.9
TIGR00805	633	oat sodium-independent organic anion transporter.	98.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.9
PRK12307	426	putative sialic acid transporter; Provisional	98.89
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.88
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.87
PRK05122	399	major facilitator superfamily transporter; Provisi	98.87
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.86
PRK11902	402	ampG muropeptide transporter; Reviewed	98.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.85
PRK10091	382	MFS transport protein AraJ; Provisional	98.85
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.85
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.85
TIGR00900	365	2A0121 H+ Antiporter protein.	98.85
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.84
PRK10489	417	enterobactin exporter EntS; Provisional	98.84
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.84
TIGR00895	398	2A0115 benzoate transport.	98.84
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.84
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.83
PRK03545	390	putative arabinose transporter; Provisional	98.83
PRK10091	382	MFS transport protein AraJ; Provisional	98.83
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.83
PRK03893	496	putative sialic acid transporter; Provisional	98.82
PRK03893	496	putative sialic acid transporter; Provisional	98.81
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.81
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.81
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.79
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.78
PRK05122	399	major facilitator superfamily transporter; Provisi	98.78
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.77
PRK11043	401	putative transporter; Provisional	98.77
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.77
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.76
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.76
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.74
KOG2504|consensus	509		98.74
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.72
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.72
PRK09705	393	cynX putative cyanate transporter; Provisional	98.71
TIGR00893	399	2A0114 d-galactonate transporter.	98.7
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.7
PRK10133	438	L-fucose transporter; Provisional	98.67
PF12832	77	MFS_1_like: MFS_1 like family	98.67
KOG1330|consensus	493		98.66
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.66
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.66
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.66
PTZ00207	591	hypothetical protein; Provisional	98.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.63
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.63
TIGR00898	505	2A0119 cation transport protein.	98.62
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.61
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.61
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.61
PRK12382	392	putative transporter; Provisional	98.59
PRK15011	393	sugar efflux transporter B; Provisional	98.58
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.55
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.55
PRK09669	444	putative symporter YagG; Provisional	98.53
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.53
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.53
PRK09874	408	drug efflux system protein MdtG; Provisional	98.53
PRK11902	402	ampG muropeptide transporter; Reviewed	98.53
PRK10429	473	melibiose:sodium symporter; Provisional	98.52
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.52
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.51
PRK09669	444	putative symporter YagG; Provisional	98.51
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.5
KOG0569|consensus	485		98.49
PRK10429	473	melibiose:sodium symporter; Provisional	98.48
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.48
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.48
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.48
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.46
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.45
COG2211	467	MelB Na+/melibiose symporter and related transport	98.45
PRK09848	448	glucuronide transporter; Provisional	98.43
PRK11462	460	putative transporter; Provisional	98.43
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.41
PRK11010	491	ampG muropeptide transporter; Validated	98.41
KOG3626|consensus	735		98.41
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.4
PRK10642	490	proline/glycine betaine transporter; Provisional	98.4
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.39
PRK09952	438	shikimate transporter; Provisional	98.39
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.38
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.38
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.38
KOG2615|consensus	451		98.37
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.37
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.36
KOG0253|consensus	528		98.35
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.34
PRK11462	460	putative transporter; Provisional	98.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.32
PRK15075	434	citrate-proton symporter; Provisional	98.31
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.3
KOG2504|consensus	509		98.29
PRK10054	395	putative transporter; Provisional	98.29
KOG1330|consensus	493		98.27
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.24
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.23
TIGR00898	505	2A0119 cation transport protein.	98.23
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.18
COG2211	467	MelB Na+/melibiose symporter and related transport	98.13
PTZ00207	591	hypothetical protein; Provisional	98.07
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.06
TIGR00901	356	2A0125 AmpG-related permease.	98.04
KOG2563|consensus	480		98.02
KOG0254|consensus	513		98.01
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.0
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.98
KOG3764|consensus	464		97.97
TIGR00805	633	oat sodium-independent organic anion transporter.	97.89
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.82
PF13347	428	MFS_2: MFS/sugar transport protein	97.8
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.74
KOG0569|consensus	485		97.71
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.67
KOG0255|consensus	521		97.67
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.61
KOG3764|consensus	464		97.61
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.58
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.57
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.57
KOG2615|consensus	451		97.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.42
KOG0254|consensus	513		97.37
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.32
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.3
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.2
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.1
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.95
KOG0252|consensus	538		96.91
KOG3762|consensus	618		96.91
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.76
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.75
KOG0252|consensus	538		96.51
KOG3762|consensus	618		96.49
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.35
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.27
KOG2533|consensus	495		96.22
KOG2532|consensus	466		96.12
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.01
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.96
KOG2816|consensus	463		95.59
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	95.53
KOG0255|consensus	521		95.52
KOG2816|consensus	463		95.42
KOG0637|consensus	498		95.39
KOG2325|consensus	488		95.28
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.9
KOG2563|consensus	480		94.67
KOG0253|consensus	528		94.51
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.08
KOG3810|consensus	433		93.49
COG0477	338	ProP Permeases of the major facilitator superfamil	93.15
KOG3098|consensus	461		92.58
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	91.43
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	91.21
COG2962	293	RarD Predicted permeases [General function predict	90.86
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.99
PRK15462	493	dipeptide/tripeptide permease D; Provisional	89.79
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	89.3
KOG1237|consensus	571		85.32
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	84.6
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	84.12
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	82.21
KOG1479|consensus	406		80.88

>KOG2532|consensus

Probab=99.88  E-value=1.5e-21  Score=149.37  Aligned_cols=174  Identities=32%  Similarity=0.599  Sum_probs=144.6

Q ss_pred             CCCCCCCC----CCCCCCCCCCCCCCCcccccCCCCCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy10147          1 MSSPDVEP----VSRRPTVPPPQPPPSAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGAN   76 (179)
Q Consensus         1 ~~~p~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~   76 (179)
                      .|+|++++    +|++.+.+...+++.++    ..+.||+++++++.+|..++..++.+++.+.+.+|+|+|+.+++|+|
T Consensus       217 ~d~P~~h~~is~~El~~I~~~k~~~~~~~----~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~  292 (466)
T KOG2532|consen  217 SDSPSKHPNISEKELKYIEKGKSEAHVKK----KPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFD  292 (466)
T ss_pred             cCCcccCCCCCHHHHHHHHhcccccccCC----CCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCC
Confidence            37777765    56666655544332221    15789999999999999999999999999999999999999999999


Q ss_pred             cccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcch--HHHHHH---HHHHHH
Q psy10147         77 SHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDN--LLFAVI---ISMGLS  150 (179)
Q Consensus        77 ~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~  150 (179)
                      ..+.| +.++|++...+..+++|.++||+.+|..+....||.+..++..+.++.++.+.+.++  .+..++   ++.++.
T Consensus       293 v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~  372 (466)
T KOG2532|consen  293 VRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS  372 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc
Confidence            99999 699999999999999999999998876677778999999999999888888777652  323333   667788


Q ss_pred             HhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        151 AFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                      +...++......|..|++.+...|+.|+
T Consensus       373 g~~~~Gf~~~~~~~apq~a~~l~g~~~~  400 (466)
T KOG2532|consen  373 GFNISGFYKNHQDIAPQHAGFVMGIINF  400 (466)
T ss_pred             ccchhhhHhhhhhccchHHHHHHHHHHH
Confidence            8888889999999999999999998875

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.73  E-value=5e-17  Score=120.31  Aligned_cols=138  Identities=19%  Similarity=0.250  Sum_probs=99.0

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      ++-+++||.+|.+++++++.+..-|++..|.|.|+.|+.|+|..+++. ..+.-+++..|.+++||+|||+.+.+     
T Consensus       245 ~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr-----  319 (448)
T COG2271         245 VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR-----  319 (448)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc-----
Confidence            345778999999999999999999999999999999999999999994 77888999999999999999987431     


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhcchH--HHHHH--HHHHHHHhh-hhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAVDNL--LFAVI--ISMGLSAFN-SAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                       |....++.+++..+.+..+...++.  +...+  ..+|++-.. ....-....|..|++ .|++.|+.+.
T Consensus       320 -R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Gl  389 (448)
T COG2271         320 -RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGL  389 (448)
T ss_pred             -cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhh
Confidence             3333334444444444444444322  32222  222221111 233566778888987 9999998765

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.72  E-value=4.1e-16  Score=120.45  Aligned_cols=147  Identities=25%  Similarity=0.434  Sum_probs=102.9

Q ss_pred             CCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         32 GPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      +.+++++++++.+|...+..++.....+.+.+|+|.|+++.+|++..+++ +..++.++..++.+++|+++||+.+|...
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~  330 (465)
T TIGR00894       251 SLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTL  330 (465)
T ss_pred             CCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45789999999999999999999999999999999999999999999999 57888999999999999999998866433


Q ss_pred             hh-hhHHHHHHHHhHHhHHHHHHHhh-cchHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        111 VL-TVRRLMTSIGLIGPAVFLIFFCA-VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       111 ~~-~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                      .+ ..++.....+.....+....... ..+.+..+.   ++.+..+......+....|..|+.+|++.|+.|+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  403 (465)
T TIGR00894       331 SLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGL  403 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHH
Confidence            22 22333333332222222222222 222332222   2222333334455666778888889999998875

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.62  E-value=1.7e-14  Score=111.58  Aligned_cols=135  Identities=16%  Similarity=0.193  Sum_probs=89.9

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhH
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVR  115 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r  115 (179)
                      ++++++.+|...+..++.....+++.+|+|.|+++.+|+|+.+++ +...+.++..++.+++|+++||+++|       +
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r-------~  325 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR-------R  325 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------c
Confidence            378899999999999998888999999999999999999999988 47778888999999999999999765       2


Q ss_pred             HHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHHhh-hhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        116 RLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSAFN-SAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      .................+...++.+...+  +..+..... .........|..|++ +|++.|+.|+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~  392 (467)
T PRK09556        326 ALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGT  392 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence            11111111111111112222223332222  222221111 112235666888875 9999999875

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.54  E-value=1.6e-13  Score=102.62  Aligned_cols=138  Identities=14%  Similarity=0.179  Sum_probs=96.9

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      +.+++++++++|...+..++.....+.+..+.|.|+++.+|+++.+++ +..+..+.+.++.+++|+++||+++|     
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----  291 (366)
T TIGR00886       217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-----  291 (366)
T ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-----
Confidence            456788899999888888887778888999999999999999999988 56677788899999999999999865     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcc--hHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVD--NLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                        |...............+.+....  +.+..+.   +.....+...+..++...+..|+++|++.|+.++
T Consensus       292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~  360 (366)
T TIGR00886       292 --RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGA  360 (366)
T ss_pred             --hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHH
Confidence              22222222222222222222222  2322222   3333444556667888888889889999998875

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=1.1e-12  Score=98.37  Aligned_cols=145  Identities=18%  Similarity=0.245  Sum_probs=96.2

Q ss_pred             CCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         32 GPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      +..+++++++++++...+..++.....+.+..+.|.|+++.+|+++.+++ +.....+...++.+++|+++||+++|...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  284 (399)
T TIGR00893       205 KYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS  284 (399)
T ss_pred             ccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            34577889999999999999999899999999999999999999998888 47777888999999999999999876311


Q ss_pred             hhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        111 VLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      ... .......+.+............+..+..+.   +..+..+ ..+..++...|..|++ +|++.|+.++
T Consensus       285 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~  354 (399)
T TIGR00893       285 LVF-ARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINS  354 (399)
T ss_pred             hhH-HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHH
Confidence            100 011111111111111111111222222222   2222222 3566788889988765 9999998764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.50  E-value=5.7e-13  Score=103.42  Aligned_cols=143  Identities=11%  Similarity=0.037  Sum_probs=96.9

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      .+++.++++++|...+..++.....+.+..|+|.|+.+++|+++.+++ +..++.+++.++.+++|+++||+++|...+ 
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~-  322 (476)
T PLN00028        244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR-  322 (476)
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc-
Confidence            356678889999888877777777778889999999998999999988 577888999999999999999998764321 


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                       .|+.......++.++..+.+...++.+..+.   +.....+...+..++...+..|+++|++.|+.+.
T Consensus       323 -~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  390 (476)
T PLN00028        323 -GRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGA  390 (476)
T ss_pred             -hhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhc
Confidence             1333333333333333333333333332222   2222222334456667777778889999988764

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.50  E-value=3.6e-13  Score=99.95  Aligned_cols=137  Identities=14%  Similarity=0.220  Sum_probs=100.4

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .+++.++++++.|.+.+.++....++-++..++|.|+++++|.++.++| +.+.....+.+..+++|+++||++.+    
T Consensus       209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~----  284 (417)
T COG2223         209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR----  284 (417)
T ss_pred             hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch----
Confidence            4577888999999999999999999999999999999999999999999 57777788999999999999999865    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhc-------chHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAV-------DNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                         |....  ....+++....+...       .+....+.   ....+.+...+..+..+...+|++.|.+.|++..
T Consensus       285 ---rv~~~--~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga  356 (417)
T COG2223         285 ---RVTLA--VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGA  356 (417)
T ss_pred             ---hHHHH--HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHH
Confidence               33222  222222222222221       12222222   2223444556668888888899999999988764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.50  E-value=8.8e-13  Score=101.17  Aligned_cols=138  Identities=12%  Similarity=0.160  Sum_probs=89.5

Q ss_pred             CcHHHHhhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         33 PRWISFISHWSLWSVYIAHFA-MNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      .++++++++++.+...+...+ ....+|.+.+|+|.|+++.+|++..+.+ ...+..+...++.++.|+++||++||   
T Consensus       233 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr---  309 (432)
T PRK10406        233 GSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR---  309 (432)
T ss_pred             ccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---
Confidence            358889999988876665554 3677888999999999998999988887 46667777788889999999999765   


Q ss_pred             hhhhHHHHHHHHhHHhHHHH-HH--HhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        111 VLTVRRLMTSIGLIGPAVFL-IF--FCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                          + .....+.+...... +.  ....++.+..+.   ++.+..+...+..+....|.+|++ |+++.|+.+.
T Consensus       310 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~  379 (432)
T PRK10406        310 ----T-SMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYA  379 (432)
T ss_pred             ----H-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHH
Confidence                2 22222221111111 11  111222232222   222333333445678889999875 9999988653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.47  E-value=4.3e-12  Score=94.99  Aligned_cols=139  Identities=17%  Similarity=0.197  Sum_probs=90.0

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      .++++++++.+|...+..++.....+.+..|.|.|+++.+|+++.+++ +.....++..++.+++|+++||..+++    
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~----  283 (379)
T TIGR00881       208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR----  283 (379)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc----
Confidence            456788899999998888888888889999999999999999999888 477777888999999999999875431    


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhh--cchHHHHHH--HHHHHHH-hhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCA--VDNLLFAVI--ISMGLSA-FNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                        |.................+..  ..+.+....  +..+... ......+....|..|++ +|++.|+.++
T Consensus       284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  353 (379)
T TIGR00881       284 --RGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGF  353 (379)
T ss_pred             --chHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence              111111111111111111211  122222222  2222211 12333456778888765 9999998875

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.45  E-value=1.7e-12  Score=97.67  Aligned_cols=135  Identities=12%  Similarity=0.031  Sum_probs=88.5

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      +++++++++.+|...+..++....+|++.+|+|+|+++ .|++.. ++ ...++.+.+.+   ..++++||..||+.   
T Consensus       184 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~---g~~~~~d~~~r~~~---  255 (368)
T TIGR00903       184 EFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLI---GVAVIPDRVARAGL---  255 (368)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHH---HHHHhhHHhhhhhh---
Confidence            47789999999999999999999999999999999976 688865 55 46666665555   45899999866421   


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                        |+.......+..++....+....+.+..+.   ++..+.....+..+++.+|.+|++ ||++.|+.|+
T Consensus       256 --r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~  323 (368)
T TIGR00903       256 --RSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGF  323 (368)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhH
Confidence              122121122222222323333333332222   222233333455788999999886 9999998875

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=9.1e-12  Score=96.14  Aligned_cols=70  Identities=19%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      .+++++.+|...+..++.....+++..|+|.|++++.|++..+++ +..+..++..++.+++|+++||+++
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~  318 (452)
T PRK11273        248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR  318 (452)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            367889999998888888888899999999999999999988888 4666677888899999999999954

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.42  E-value=1.6e-11  Score=94.37  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=60.2

Q ss_pred             HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         38 FISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      +++++.+|...+..++.....+++.+|+|.|+++.+|+++.+++ ......+++.++.+++|+++||+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~  308 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN  308 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence            56788999888888888788888899999999888999999988 4777788899999999999999854

>TIGR00897 2A0118 polyol permease family

Probab=99.42  E-value=1.3e-11  Score=93.84  Aligned_cols=136  Identities=16%  Similarity=0.235  Sum_probs=88.4

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      ++++++++|.+|...+..++.....+++.+|.|.|+++ +|+++.+.+ +.....+++.++.++.|+++||+++|     
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~-----  287 (402)
T TIGR00897       214 AATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWM-----  287 (402)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----
Confidence            45678899999998888888888999999999999865 899998888 46677888999999999999999764     


Q ss_pred             hhHHHHHHHHhHHhHH---HHHHHh--hcchHHHHHH--HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAV---FLIFFC--AVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                        + .....+.+...+   .+....  ..++.+...+  +..+..............+..|+++|++.|+.|+
T Consensus       288 --~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  357 (402)
T TIGR00897       288 --N-TVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAPKHKGAAMSVLNL  357 (402)
T ss_pred             --h-HHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence              2 111111111111   111111  1123332222  2222211112233455667778889999998875

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10133 L-fucose transporter; Provisional

Probab=99.37  E-value=3.2e-11  Score=92.83  Aligned_cols=136  Identities=5%  Similarity=-0.030  Sum_probs=92.9

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYM-SSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l-~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      .++++++++|.++...+..++.....++...|.|.|+ ++.+|+++.++++ .....++..+|++++|++.||+++|   
T Consensus       249 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~---  325 (438)
T PRK10133        249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---  325 (438)
T ss_pred             hhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH---
Confidence            3467889999998888888888888888888999985 6678999999995 6777788899999999999999764   


Q ss_pred             hhhhHHHHHHHHhHHhHHHHHHHhhcchHHHH-HH-HHHHHHHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147        111 VLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFA-VI-ISMGLSAFNSAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                           +... .+.+.....+......++.+.. .+ +...+.+...+..++...+..|++.+++.++.+
T Consensus       326 -----~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~  388 (438)
T PRK10133        326 -----KVLA-AYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV  388 (438)
T ss_pred             -----HHHH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh
Confidence                 2222 2232322222222222222221 12 333345555777888888888877767766554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.34  E-value=5e-11  Score=91.69  Aligned_cols=71  Identities=17%  Similarity=0.263  Sum_probs=61.6

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .+++++.+|...+..++.....+++.+|+|.|+++..|+++.++++ ..+..+.+.++++++|+++||++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4678899999888888888888999999999999989999999884 6667788899999999999998643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.34  E-value=3.5e-11  Score=91.90  Aligned_cols=135  Identities=17%  Similarity=0.203  Sum_probs=85.4

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSY-LGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      +++++ ++.+|...+..++....++++.+|+|.|+++. .|+++.+++ +...+.+...+|.+++|+++||+++|     
T Consensus       236 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r-----  309 (412)
T TIGR02332       236 LREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER-----  309 (412)
T ss_pred             HHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc-----
Confidence            44444 68889999999999999999999999999883 467877888 57888899999999999999999754     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH-HHHHHHHh--hhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI-ISMGLSAF--NSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                        +.. .....+.....+......++....+. +..+..+.  ..+..+....|..|+ ++|++.|+.|+
T Consensus       310 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~  376 (412)
T TIGR02332       310 --KHH-TALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINA  376 (412)
T ss_pred             --HHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHH
Confidence              221 11122222222222212222222222 22222222  122344555666665 59999998875

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.33  E-value=6.6e-11  Score=88.21  Aligned_cols=137  Identities=11%  Similarity=0.050  Sum_probs=92.3

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIM-QWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      .+++++++++.++...+..+......+... .+.|.|.++.+|+++.+.+ +.....++..++.++.+++.||.+++   
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  277 (365)
T TIGR00900       201 EGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM---  277 (365)
T ss_pred             hHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---
Confidence            346678889999888887777777777666 8999999988999998888 46677788889999999999998653   


Q ss_pred             hhhhHHHHHHHHhHHhHHHHHHHhhcch-HHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        111 VLTVRRLMTSIGLIGPAVFLIFFCAVDN-LLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                            .....+....++........++ .+...+  +..+ ..+...+...+...|..|++ +|++.|+.++
T Consensus       278 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (365)
T TIGR00900       278 ------ALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFS  344 (365)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                  2233333333333333333332 333222  2222 22333555678888888765 9999998764

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.32  E-value=3.1e-11  Score=90.79  Aligned_cols=136  Identities=11%  Similarity=0.173  Sum_probs=88.4

Q ss_pred             CCcHHHHhhcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy10147         32 GPRWISFISHWS--LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHS  108 (179)
Q Consensus        32 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~  108 (179)
                      ..++++++++++  ++...+..++.....+....++|.|+++++|+++.+.+ +.....+...++.+++|+++||+++| 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-  285 (394)
T TIGR00883       207 RGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR-  285 (394)
T ss_pred             cCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-
Confidence            345677777765  77777777777788888899999999998999998888 46677788899999999999999764 


Q ss_pred             CchhhhHHHHHHHHhHHhHHH---HHHHhhcchHHHHHH--HHH-HHHHhhhhchhhhhhhccchh-HHHHHHH
Q psy10147        109 WTVLTVRRLMTSIGLIGPAVF---LIFFCAVDNLLFAVI--ISM-GLSAFNSAGFLASHADIAPNH-AGVTFAI  175 (179)
Q Consensus       109 ~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi  175 (179)
                             +.....+.+.....   ...+...++.+....  +.. ...+...+..++...|..|++ |+++.++
T Consensus       286 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  352 (394)
T TIGR00883       286 -------PVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASL  352 (394)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeee
Confidence                   22222222222111   111111223333222  222 223344566788899998865 7766554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.29  E-value=9.3e-11  Score=87.70  Aligned_cols=135  Identities=10%  Similarity=0.089  Sum_probs=89.2

Q ss_pred             cHHHHhhcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhh-HHHHHHHHHHHHHHHHHHHhcC
Q psy10147         34 RWISFISHWS---LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMP-YVLNSLFCIVAGHFADNLVSHS  108 (179)
Q Consensus        34 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~-~~~~~ig~~~~g~l~dr~~~r~  108 (179)
                      +++++++++.   ++...+..++.....+....++|.|+++ +|+++.+.+ +.... .+...++.+++|+++||+++| 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-  275 (356)
T TIGR00901       198 PIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-  275 (356)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-
Confidence            5667777765   7777777777778888889999999988 899999888 44433 356789999999999999864 


Q ss_pred             CchhhhHHHHHHHHhHHhHHHHHHHhhc-----------chHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHH
Q psy10147        109 WTVLTVRRLMTSIGLIGPAVFLIFFCAV-----------DNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTF  173 (179)
Q Consensus       109 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  173 (179)
                            + ... .+.+..++....+...           ++.+....   +.....+...+...+...+..|++ +|+..
T Consensus       276 ------~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  347 (356)
T TIGR00901       276 ------Y-ALL-LFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQM  347 (356)
T ss_pred             ------H-HHH-HHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHH
Confidence                  2 222 2223322222222111           22232222   222334455777899999998765 99999


Q ss_pred             HHhhc
Q psy10147        174 AISNT  178 (179)
Q Consensus       174 gi~~~  178 (179)
                      |+.++
T Consensus       348 g~~~~  352 (356)
T TIGR00901       348 ALLSS  352 (356)
T ss_pred             HHHHH
Confidence            98764

>KOG2533|consensus

Probab=99.29  E-value=2.3e-11  Score=94.16  Aligned_cols=76  Identities=20%  Similarity=0.272  Sum_probs=68.4

Q ss_pred             CCCCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHH
Q psy10147         30 TNGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLV  105 (179)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~  105 (179)
                      .++..+++.+++|.+|..++..++.....|++.+|+|.|+.+..|+|..++. +.....++++++.+++|+++||+.
T Consensus       261 ~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  261 FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            3455678999999999999999999999999999999999996679999999 577788999999999999999963

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.29  E-value=2.1e-10  Score=86.16  Aligned_cols=135  Identities=14%  Similarity=0.160  Sum_probs=83.2

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      .++.+++++++......++..........++|.|+++++|.++.+.++ .........++.+++|+++||+++|      
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~------  265 (375)
T TIGR00899       192 VRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR------  265 (375)
T ss_pred             hhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------
Confidence            445667777776665555555555666778999999999999988884 5555556677888999999999764      


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HH-HHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--IS-MGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                        +.. ..+.+...+........++.+....  +. ....+...+.......|..|++++++.|+.+.
T Consensus       266 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (375)
T TIGR00899       266 --RLM-LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTN  330 (375)
T ss_pred             --hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence              222 2233333322222222333333222  21 22233334556677788888887788887653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG4686|consensus

Probab=99.28  E-value=4.2e-11  Score=85.42  Aligned_cols=128  Identities=10%  Similarity=0.138  Sum_probs=91.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q psy10147         41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMT  119 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~  119 (179)
                      .|++|...++.+++..+++-+.+..|.++++.+|+|+.+++ .....+.++.+.+++.|.++||.+++       - ++.
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n-------~-~wv  334 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN-------L-WWV  334 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce-------e-hhH
Confidence            57899999999999999999999999999999999999999 67788888999999999999999875       1 222


Q ss_pred             HHHhHHhHHHHHHHhh-cchHHHHHH-HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        120 SIGLIGPAVFLIFFCA-VDNLLFAVI-ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       120 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ..+.+.....-..+.+ .-+++..+. +++.. ......+|..++.+.|++ .|++.|...
T Consensus       335 ~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsy-sllAcslWP~va~~vpE~qLGTaygf~q  394 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFTFLSPYTSMTFLGLSY-SLLACSLWPCVASLVPEEQLGTAYGFIQ  394 (459)
T ss_pred             HHHHHHHHHHhhhHHhhhccHHHHHHHHhhhH-HHHHHHHhhhhhhhCCHHHhcchHHHHH
Confidence            2222222222222221 123443333 22211 122334799999999987 899988765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.28  E-value=2.2e-11  Score=90.35  Aligned_cols=137  Identities=20%  Similarity=0.303  Sum_probs=90.0

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGAN-SHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~-~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      ++.+++++.+|......++.....+....++|.|+++.+|++ ..+.+ +..+..+.+.++.++.|+++||++++     
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  273 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----  273 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----
Confidence            667778887775666666666788889999999999999999 67777 47777888888899999999997653     


Q ss_pred             hhHHHHH-HHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        113 TVRRLMT-SIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                        +.... ..........+......++....+.  +..+ ..+...+...+...+..|+ ++|++.|+.++
T Consensus       274 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  342 (352)
T PF07690_consen  274 --RRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNS  342 (352)
T ss_dssp             --HHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence              22222 2222222211111122222233222  2222 3444566788888998875 59999998874

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.27  E-value=6.1e-10  Score=82.03  Aligned_cols=131  Identities=11%  Similarity=0.014  Sum_probs=87.9

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSY--LGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      +++++|.++...+..+++....-++..|++.|+.+.  +|+++.+++ .......+..+|.++++++.||++.|      
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~------  208 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG------  208 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH------
Confidence            567788899888888888888999999999999864  689998888 47778889999999999999999754      


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccchhHHHHHHHh
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPNHAGVTFAIS  176 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~  176 (179)
                        +.+ ..+.+...+........+.......  +...+.+..++...+...+..|++.++++++.
T Consensus       209 --~~l-~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~  270 (310)
T TIGR01272       209 --RYL-AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL  270 (310)
T ss_pred             --HHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence              222 2233333333322222222221112  22233344466667777777777766666654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.27  E-value=2.7e-10  Score=86.32  Aligned_cols=136  Identities=10%  Similarity=0.119  Sum_probs=86.0

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      +++++++++.++...+..++.....+....++|.|+++.+|+++.+++ +.....+++.++.++.|+++||+++|     
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----  271 (390)
T PRK03545        197 SLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----  271 (390)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----
Confidence            456788999988777777776677777788899999988899998888 46667788899999999999998643     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHH-HhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLS-AFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                          .......+............++.+....  +..+.. ............+..|+++|.+.|+.+.
T Consensus       272 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  336 (390)
T PRK03545        272 ----FLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSG  336 (390)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHH
Confidence                2222222222222222222333332222  222221 1223335566677778778888776653

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.27  E-value=5.3e-10  Score=84.57  Aligned_cols=133  Identities=11%  Similarity=0.084  Sum_probs=88.7

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      ++++++|+|++|...+..++.....+.+..+.|.|+++ .|+++.+.| +.....+...++.++.+++.||++.|     
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----  270 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----  270 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----
Confidence            46789999999999988888888888999999999977 799999888 45555555666666667777776532     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                          ..+..+.+...+........++.+..+.   +-....+...+....++.+. |+ +++++.++.+
T Consensus       271 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~  334 (382)
T TIGR00902       271 ----DLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN  334 (382)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence                3344566665555555555555554333   22223344444456666666 54 4777766654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10054 putative transporter; Provisional

Probab=99.26  E-value=1.9e-10  Score=87.43  Aligned_cols=127  Identities=13%  Similarity=0.166  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      +.++.+.+..++...+.+....++|.|+++++|+|..+.|+ .....+...++.++.|+++||+++|         ..+.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k---------~~~~   77 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK---------RYML   77 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---------hhHH
Confidence            34667777888888889999999999999999999999994 7777788899999999999999865         2233


Q ss_pred             HHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        121 IGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      .+.+...+..+.+.+.++.+..++  ...+ ..+...+.......|..|+ +|+.+.|+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  138 (395)
T PRK10054         78 LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNY  138 (395)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence            344444444444444555444333  1111 2222344466777787765 4888877765

>PRK09952 shikimate transporter; Provisional

Probab=99.26  E-value=3.6e-10  Score=87.00  Aligned_cols=131  Identities=10%  Similarity=0.064  Sum_probs=80.7

Q ss_pred             HHhhcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q psy10147         37 SFISHWSLWSVYI-AHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTV  114 (179)
Q Consensus        37 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~  114 (179)
                      .++++++.|...+ ..++.....|....|.|.|+++.+|++..... ...+..+...++.++.|+++||++||       
T Consensus       244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr-------  316 (438)
T PRK09952        244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR-------  316 (438)
T ss_pred             HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-------
Confidence            4667777766544 45566778888999999999998999886544 34445566788889999999999865       


Q ss_pred             HHHHHHHHhHHhHHHHHH--Hh-hcc-hHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        115 RRLMTSIGLIGPAVFLIF--FC-AVD-NLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       115 r~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                      + ... .+.+...+....  .. ... ..+..+.   +.....+...+..++++.|.+|.+ |+++.|+.
T Consensus       317 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~  384 (438)
T PRK09952        317 R-VYI-TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVG  384 (438)
T ss_pred             H-HHH-HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHH
Confidence            2 222 222222222111  11 112 2222222   222233344556788999999865 87777764

>TIGR00896 CynX cyanate transporter

Probab=99.25  E-value=4.6e-10  Score=83.96  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .+++++++.+|...+..++....++....|+|.|+++ .|+|+.+.+ +.....++..+++++.|+++||+++|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       190 PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence            4577889998887777777778888899999999987 699998888 57778889999999999999998543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.25  E-value=6.2e-10  Score=86.88  Aligned_cols=136  Identities=11%  Similarity=0.159  Sum_probs=81.1

Q ss_pred             CCcHHHHhhc-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy10147         32 GPRWISFISH-WSLWS-VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHS  108 (179)
Q Consensus        32 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~  108 (179)
                      +.++++++++ ++.+. .....++....+|++..|+|.|+++.+|++..++++ .....++..++.+++|+++||++|| 
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr-  316 (490)
T PRK10642        238 KVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR-  316 (490)
T ss_pred             cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence            3467777763 33332 333445566788899999999999888998877664 5556677889999999999999864 


Q ss_pred             CchhhhHHHHHHHHhHH-hH--HHHHHHhhcchHHHHHH--HHH-HHHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        109 WTVLTVRRLMTSIGLIG-PA--VFLIFFCAVDNLLFAVI--ISM-GLSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       109 ~~~~~~r~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                             +. +..+.+. ..  ...+.....++....+.  +.. ...+...+.......+.+|++ ||++.|+.
T Consensus       317 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~  383 (490)
T PRK10642        317 -------PF-VILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA  383 (490)
T ss_pred             -------HH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHH
Confidence                   22 2222221 11  11111112222222222  111 122333445667777888876 99888763

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.24  E-value=4.3e-10  Score=84.11  Aligned_cols=135  Identities=15%  Similarity=0.120  Sum_probs=85.4

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      +.+++++++.++...+..++..........+.+.|.++ +|++..+.+ +.....+...++.++.|+++||+++|     
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----  270 (377)
T TIGR00890       197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ-----  270 (377)
T ss_pred             hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence            45678889988887777776666666666777777654 788887777 47778888999999999999999764     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcch--HHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDN--LLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                         +. ...+.+...+........++  ....+.   +.....+...........|..|++ +|++.|+.+.
T Consensus       271 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  338 (377)
T TIGR00890       271 ---KT-MSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYT  338 (377)
T ss_pred             ---hh-hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHH
Confidence               22 22333333333333332222  111111   111122233445567788888755 9998888764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.23  E-value=2.5e-10  Score=87.78  Aligned_cols=73  Identities=10%  Similarity=0.094  Sum_probs=58.2

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .++++++|+|+.|...+.+++.+.++.++..++|.|+++.+  +..... ...+..+.+.++.+++|+++||++++
T Consensus       243 ~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~  316 (462)
T PRK15034        243 ADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV  316 (462)
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence            34667899999999999999999999999999999998865  332222 23344577889999999999999864

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.23  E-value=4.3e-10  Score=84.61  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ++++++++++++...+..++.....+.+..+.|.++.+.+|+++.+.+ +.....++..++.+++|++.||+++|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~  260 (377)
T PRK11102        186 NFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL  260 (377)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            456788899888877777777777888888999999998999999988 46677788899999999999999764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.23  E-value=2.5e-10  Score=85.96  Aligned_cols=136  Identities=15%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      ++++++++++++...+...+.....+....+.|.++++.+|+++.+.+ +.....++..++.+++|++.||+++|     
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----  272 (385)
T TIGR00710       198 TFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----  272 (385)
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----
Confidence            456788899998888877777778888899999999999999999988 46667788899999999999998764     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhh---cc-hHH-HHHH--HHHHH-HHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCA---VD-NLL-FAVI--ISMGL-SAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                        +...  .+.....+....+..   .. ..+ ..+.  ...+. .+...+.......|..|+++|++.++.|+
T Consensus       273 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  342 (385)
T TIGR00710       273 --SLLR--MGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGT  342 (385)
T ss_pred             --HHHH--HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence              2211  122222211111111   11 111 1111  11111 22334455666677778778888887664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.22  E-value=3.6e-10  Score=88.34  Aligned_cols=133  Identities=12%  Similarity=-0.019  Sum_probs=90.5

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhH
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVR  115 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r  115 (179)
                      ++++++.++...+..++.....++...++|.|+|+.+|+|+.++|+ .....++..++.++.|++.||+++|        
T Consensus       254 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~--------  325 (495)
T PRK14995        254 RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR--------  325 (495)
T ss_pred             HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--------
Confidence            6889999988888888888889999999999999999999999995 5566678889999999999999753        


Q ss_pred             HHHHHHHhHHhHHHHHHHhh---cchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        116 RLMTSIGLIGPAVFLIFFCA---VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      + ....+.+...+....+..   .++.+....   +.....+...........+..|++ +|.+.++.|+
T Consensus       326 ~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~  394 (495)
T PRK14995        326 L-VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETM  394 (495)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHH
Confidence            2 223344333333322221   122322222   222223333445566666666654 8888888774

>PRK03699 putative transporter; Provisional

Probab=99.20  E-value=9.8e-10  Score=83.44  Aligned_cols=67  Identities=9%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ++.++...+..++.....+.+..|+|.|+++++|+|+.+++ +.....++..++.+++|+++||+++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  271 (394)
T PRK03699        204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ  271 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            45667777777777788889999999999999999999988 57777888999999999999999764

>PRK15075 citrate-proton symporter; Provisional

Probab=99.20  E-value=1e-09  Score=84.33  Aligned_cols=134  Identities=13%  Similarity=0.178  Sum_probs=80.4

Q ss_pred             HHHHhhcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         35 WISFISHWSLWSV-YIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        35 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      ++++.++++.+.. .+..++.....+.+..|.|.|+++.+|++..++++ ..+..+++.++.+++|+++||+++|     
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----  304 (434)
T PRK15075        230 FRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR-----  304 (434)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            4445556655543 33344456677888999999999989999888884 6667788899999999999999864     


Q ss_pred             hhHHHHHHHHhHHhHHHHHH---HhhcchHHHH-H-H-HHHHHHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        113 TVRRLMTSIGLIGPAVFLIF---FCAVDNLLFA-V-I-ISMGLSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                         +.......+........   ....++.... . . +.....+...+..+....|..|++ ||++.|+.
T Consensus       305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~  372 (434)
T PRK15075        305 ---PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLA  372 (434)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHH
Confidence               22222121111111111   1111222111 1 1 222233333445667888988876 88887764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.19  E-value=7.9e-10  Score=85.85  Aligned_cols=133  Identities=16%  Similarity=0.080  Sum_probs=89.3

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhH
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVR  115 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r  115 (179)
                      ++++++.++...+..++.....++..+++|.|+++.+|+++.++++ .....++..++.+++|++.||+++|        
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~--------  321 (485)
T TIGR00711       250 RLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR--------  321 (485)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--------
Confidence            6788999988888888888889999999999999999999999994 6667788899999999999998753        


Q ss_pred             HHHHHHHhHHhHHHHHHHh--hc-c-hHHHHHH--HHH-HHHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        116 RLMTSIGLIGPAVFLIFFC--AV-D-NLLFAVI--ISM-GLSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                       .....+.+...+......  .. + +.+....  +.. ...+...........+..|+ ++|++.|+.|+
T Consensus       322 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  391 (485)
T TIGR00711       322 -KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNF  391 (485)
T ss_pred             -HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHH
Confidence             223334444433333332  11 1 2222222  111 12222233444555565664 59999998774

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.19  E-value=5.9e-10  Score=83.44  Aligned_cols=126  Identities=13%  Similarity=0.208  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q psy10147         43 SLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSI  121 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~  121 (179)
                      .+|..++..+......+.+..++|.++++++|+|+.+.++ .....++..++.+++|+++||+++|         .....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR---------YTTTL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch---------HHHHH
Confidence            3567777788888888889999998899999999999994 7788889999999999999999864         22334


Q ss_pred             HhHHhHHHHHHHhhcc-hHHHHHH--HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        122 GLIGPAVFLIFFCAVD-NLLFAVI--ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       122 ~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      +.+...+..+.....+ +.+..++  +..+..+.........+.+..|+ +|+.+.++.+
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  132 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAA  132 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHH
Confidence            4444444444444444 4444433  33333333344456777888765 4888887754

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.18  E-value=1.1e-09  Score=83.18  Aligned_cols=70  Identities=13%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +.+++++.|...+..++....+++..+|+|.|+++ +|+++.++| +..+..++..++.++.|++.||+++|
T Consensus       200 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~  270 (393)
T PRK09705        200 RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR  270 (393)
T ss_pred             ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            45667888887777777788888999999999987 799999999 57778888999999999999998654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.18  E-value=3e-09  Score=80.50  Aligned_cols=135  Identities=10%  Similarity=0.114  Sum_probs=85.6

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .++++++++|.+|...+..++.......+..+.|.|+++ .|+++.+.| +.....+...+..++.|++.||+++|    
T Consensus       196 ~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----  270 (382)
T PRK11128        196 PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR----  270 (382)
T ss_pred             chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----
Confidence            457899999999988887777777777788888999865 799988888 45555566677777888888887543    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                           ..+..+.+...+....+...++.+..++  +..+ ..+...+....+..+..++++++..++.+
T Consensus       271 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (382)
T PRK11128        271 -----DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYS  334 (382)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHH
Confidence                 2233444444444444444555554333  2222 22333444455555555555666666554

>TIGR00895 2A0115 benzoate transport

Probab=99.18  E-value=1.2e-09  Score=82.39  Aligned_cols=127  Identities=15%  Similarity=0.137  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      +..+...+..++.....+....|+| ++.+.+|+++.+++ +.....++..++.+++|+++||+++|         ....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~  319 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---------VTAL  319 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHH
Confidence            3445555566666777788888999 55666899998888 47777888999999999999998653         2222


Q ss_pred             HHhHHhHHHHHHHhhcchHHHHHH--HHH-HHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        121 IGLIGPAVFLIFFCAVDNLLFAVI--ISM-GLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      ...+.............+.+....  +.. ...+...+..++...|..|++ +|++.|+.++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  381 (398)
T TIGR00895       320 LLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIG  381 (398)
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence            222222222222221223332222  222 233344566788899988765 9999888764

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.17  E-value=1e-09  Score=85.64  Aligned_cols=138  Identities=12%  Similarity=0.187  Sum_probs=87.4

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-h-hhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-T-AMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~-~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      .+++++++++..|...+..++.....+....+.|.|+.+++|+|+.+.++ . ....++..+|.+++|+++||+++|   
T Consensus       213 ~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~---  289 (491)
T PRK11010        213 APLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF---  289 (491)
T ss_pred             HHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---
Confidence            35778888887777666666666777777888999998889999999984 4 355678899999999999999864   


Q ss_pred             hhhhHHHHHHHHhHHhH--HHHHHHhhc-chHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        111 VLTVRRLMTSIGLIGPA--VFLIFFCAV-DNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       111 ~~~~r~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                           +.....+.+...  +....+... ++.+....   +.....+...+..++...+..+++ .++..|+.|.
T Consensus       290 -----~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s  359 (491)
T PRK11010        290 -----RALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSA  359 (491)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence                 222222221111  111112222 23222221   222233444555677778887765 7777777664

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.16  E-value=1.9e-09  Score=81.84  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHH
Q psy10147         50 AHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAV  128 (179)
Q Consensus        50 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~  128 (179)
                      .........+.+..++|.|+++.+|+++.+.+ +.....+...++.+++|+++||+++|       + .. ..+.+....
T Consensus       224 ~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-------~-~~-~~~~~~~~~  294 (393)
T PRK15011        224 ICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-------F-LM-RVAAVAGVC  294 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------H-HH-HHHHHHHHH
Confidence            33444445556677999999999999998888 45555667788899999999999764       2 22 222222222


Q ss_pred             HHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147        129 FLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       129 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                      ........++.+..+.   +.....+...+.......|..|+++|++.++.+
T Consensus       295 ~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~  346 (393)
T PRK15011        295 FYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYT  346 (393)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            2222222333333222   222233333444556678888888888887764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.15  E-value=2.1e-09  Score=81.72  Aligned_cols=126  Identities=16%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q psy10147         43 SLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSI  121 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~  121 (179)
                      ..+...+..++.....+....|+|.|+++ .|+++.+.+ +.....++..++.++.|+++||+++|        +. ...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~-~~~  290 (406)
T PRK11551        221 ATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR--------RV-VLL  290 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HH-HHH
Confidence            34444455555566777888899999987 699998888 47777788999999999999999754        22 222


Q ss_pred             HhHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        122 GLIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      +.+...+.+..+...++.+...+  +..++ .+...+..++...|..|++ +|++.|+.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  351 (406)
T PRK11551        291 IYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVA  351 (406)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHH
Confidence            33323333333333333333222  22222 2223455677888888765 9999888764

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.14  E-value=1.9e-09  Score=80.79  Aligned_cols=131  Identities=15%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      ..+++|+|.++...+..++...+.|...+|+-.++++..|+|....++ .....+++.+|+.++|+++|| +.|      
T Consensus       204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~------  276 (394)
T COG2814         204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR------  276 (394)
T ss_pred             HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch------
Confidence            557899999999999999999999999999999999999999988884 777889999999999999999 432      


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhc-chHHHHHH-HHHHHHHhh----hhchhhhhhhccchhHHHHHHHhh
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAV-DNLLFAVI-ISMGLSAFN----SAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                        +.+.. ......+.+..+... ++.+..+. +..  .++.    ....+....+..|+.++.+.++++
T Consensus       277 --~~l~~-~~~l~a~~~l~l~~~~~~~~~~~~~~~~--wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~  341 (394)
T COG2814         277 --RALIA-ALLLLALALLALTFTGASPALALALLFL--WGFAFSPALQGLQTRLARLAPDAADLAGSLNV  341 (394)
T ss_pred             --hHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHH--HHHHhhhhhhHHHHHhcccCCCchHHHHHHHH
Confidence              23322 222222333333333 33433333 222  2222    223444555545677777777654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.14  E-value=1.6e-09  Score=82.81  Aligned_cols=135  Identities=12%  Similarity=0.097  Sum_probs=83.3

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      +++.++++|.++...+..++.. ..+++..+.|.|+++.+|+++.+.+ +.....++..++.++.+++.||.++      
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~------  288 (417)
T PRK10489        216 GFRFLLASPVVGGIALLGGLLT-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARP------  288 (417)
T ss_pred             HHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCc------
Confidence            3556777888766655555433 3456778999999998999998888 4666677788888888988887422      


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                        ++. ...+.+...+....+...++.+....  +..++ .+...+...+.+.+..|++ +|++.|+.++
T Consensus       289 --~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  355 (417)
T PRK10489        289 --GLL-MLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTA  355 (417)
T ss_pred             --chH-HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence              122 22333333333333333444333222  22222 2222344567888888875 9999988754

>PRK11043 putative transporter; Provisional

Probab=99.13  E-value=1.7e-09  Score=82.21  Aligned_cols=139  Identities=8%  Similarity=-0.001  Sum_probs=82.2

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .++++++++++++...+...+.....+.+..+.|.|+++ +|+++.+.++ .....++..+|.++++++.||+++|.   
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~---  269 (401)
T PRK11043        194 LTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ---  269 (401)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---
Confidence            357788999998877766666667777888899998876 7999988885 44455667777888888888876431   


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhh--cchHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCA--VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                        ..+. .................  .++.+..+.   +.....+...+.......+..|+++|.+.|+.|+
T Consensus       270 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  338 (401)
T PRK11043        270 --LLPW-LLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNT  338 (401)
T ss_pred             --HHHH-HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHH
Confidence              0111 11111111111111111  222222222   1112223334445555566667779999988875

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.13  E-value=2.5e-09  Score=81.42  Aligned_cols=75  Identities=5%  Similarity=-0.088  Sum_probs=60.2

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .++++++++|.++...+..++.....+...++.|.|+++.+|+++.+.++ .....++..++.++.|+++||+++|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~  281 (406)
T PRK15402        206 RDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR  281 (406)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            34667889999988887777776667777888999999989999988884 4555567788999999999998754

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.13  E-value=1.8e-09  Score=83.58  Aligned_cols=136  Identities=13%  Similarity=0.103  Sum_probs=87.8

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhH
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVR  115 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r  115 (179)
                      ++++++.++...+..++.....+....++|.|+++ .|+++.+++ +..+..++..++.+++|+++||...+  .   .|
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~--~---~~  309 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR--P---HV  309 (455)
T ss_pred             HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--H---HH
Confidence            57889999988888888778888888999999876 699999888 47777788889999999999973211  0   02


Q ss_pred             HHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        116 RLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      +.....+.+...+..+.....++.+..++  +..++ .+...+..++.+.|..|++ +|++.|+.++
T Consensus       310 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~  376 (455)
T TIGR00892       310 QYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTI  376 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHH
Confidence            22222223322222222333344443322  22222 2233445677778877664 8999888764

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.12  E-value=1.8e-09  Score=81.71  Aligned_cols=122  Identities=15%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHh
Q psy10147         48 YIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGP  126 (179)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~  126 (179)
                      .....+.....+....++|.|+.+++|+++.+.+ +.....++..++.++.|+++||+++|        +... .+.+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~--------~~~~-~~~~~~  314 (405)
T TIGR00891       244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR--------KAYV-CSLLAG  314 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--------hhhH-HHHHHH
Confidence            3333444455556778999999999999999888 47777788999999999999999764        2222 222222


Q ss_pred             HHH-HHHHhhcchHHHHHH--HHH-HHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        127 AVF-LIFFCAVDNLLFAVI--ISM-GLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       127 ~~~-~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      ... .......++.+...+  ... .+.+...+.......|..|++ +|++.|+.+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  371 (405)
T TIGR00891       315 QLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQ  371 (405)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHH
Confidence            111 111222222222222  111 222223445677788888765 9999988764

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.10  E-value=3.1e-09  Score=83.22  Aligned_cols=122  Identities=10%  Similarity=0.068  Sum_probs=77.7

Q ss_pred             HHhhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHH-HHhcCCchhh
Q psy10147         37 SFISHWS-LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADN-LVSHSWTVLT  113 (179)
Q Consensus        37 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr-~~~r~~~~~~  113 (179)
                      +.+++|+ ++..++..++...++|++..++|.|+++++|++..+++. ............+++|+++|| +++|      
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r------   88 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK------   88 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------
Confidence            4557764 888888999999999999999999999999999988773 434333444445789999999 4754      


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhcc-hHHHHHH--HHHH-HHHhhhhchhhhhhhccch
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAVD-NLLFAVI--ISMG-LSAFNSAGFLASHADIAPN  167 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~  167 (179)
                         .....+.+...+........+ ..+...+  ...+ ..+...+...+...+.+|+
T Consensus        89 ---~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~  143 (500)
T PRK09584         89 ---RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK  143 (500)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC
Confidence               233344444444444443332 2222222  2222 2333345566778888763

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.09  E-value=3.1e-09  Score=81.32  Aligned_cols=135  Identities=16%  Similarity=0.125  Sum_probs=80.6

Q ss_pred             cHHHHhhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy10147         34 RWISFISHWSLWSVYIA---HFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSW  109 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~  109 (179)
                      +++++++++.++.....   .++.....+.+..++|.|+++ .|+++.+.+ +.....++..++.+++|+++||+++|  
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~--  296 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK--  296 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--
Confidence            56788888876543332   233334445577899999987 599988888 46677788999999999999999754  


Q ss_pred             chhhhHHHHHHHHhHHhHHHHHHHhh-cchHHHHHH---HHHHHHH-hhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        110 TVLTVRRLMTSIGLIGPAVFLIFFCA-VDNLLFAVI---ISMGLSA-FNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                            +. ...+.+...+....+.. .......+.   .+.+... ...+..+..+.|..|++ +|++.|+.+.
T Consensus       297 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  364 (426)
T PRK12307        297 ------KT-FSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYN  364 (426)
T ss_pred             ------HH-HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHH
Confidence                  22 22333333322222221 112111111   2221111 11334567778888875 9999887653

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.09  E-value=3.7e-09  Score=80.52  Aligned_cols=124  Identities=13%  Similarity=0.166  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHh
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGL  123 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~  123 (179)
                      +......++...+.+....++|.|+++++|+|+.+.|+ .....+...+..+++|+++||+++|         ..+..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k---------~~l~~~~   83 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK---------PMIVTGM   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch---------HHHHHHH
Confidence            44556777777888889999999999999999999994 6666777888889999999999754         3344455


Q ss_pred             HHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        124 IGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      +...+........++.+...+  +..+. .+...+...+.+.+..|+ +++.+.|+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  141 (400)
T PRK11646         84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLM  141 (400)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            555555554444455544333  22232 223345567778888765 5999988865

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.08  E-value=2.3e-09  Score=83.28  Aligned_cols=126  Identities=13%  Similarity=0.122  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHH-HhcCCchhhhHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNL-VSHSWTVLTVRRLMT  119 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~-~~r~~~~~~~r~~~~  119 (179)
                      +.++..+...+.....+|++..++|.|+++.+|+++.+++ ..........++.+++|+++||+ ++|        +. .
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr--------r~-i   79 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR--------MA-V   79 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH--------HH-H
Confidence            3466777777888899999999999999999999999988 46666777888999999999999 654        32 3


Q ss_pred             HHHhHHhHHHHHHHhhcc-hHHHHHH-HHH--HHHHhhhhchhhhhhhccch---hHHHHHHHh
Q psy10147        120 SIGLIGPAVFLIFFCAVD-NLLFAVI-ISM--GLSAFNSAGFLASHADIAPN---HAGVTFAIS  176 (179)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~---~~g~~~gi~  176 (179)
                      ..+.+...+....+...+ ....... +..  ...+...+...+.+.|.+|+   +|+++.++.
T Consensus        80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~  143 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLM  143 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHH
Confidence            345444444433333221 1111122 222  22233345567888898864   376666654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.07  E-value=1.4e-08  Score=78.31  Aligned_cols=128  Identities=12%  Similarity=0.112  Sum_probs=89.6

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHH
Q psy10147         40 SHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLM  118 (179)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~  118 (179)
                      .++.++...+......+.++.+....+.+-++++|+|+.|.+ +..++.+.+.++.+..|++.||++.|        +..
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R--------~v~  103 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR--------RWT  103 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--------HHH
Confidence            356777777777777777777777777766657999999999 58888889999988899999999864        332


Q ss_pred             HHHHhHHhHHHHHHHhhc-----chHHHHHH--HHHHHHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        119 TSIGLIGPAVFLIFFCAV-----DNLLFAVI--ISMGLSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                       ..+.+..++..+.....     ++.+..++  ...++.+..++.....+.+.+|++ +|.+.|+.
T Consensus       104 -~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~  168 (462)
T PRK15034        104 -VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGIN  168 (462)
T ss_pred             -HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHH
Confidence             23333334444444432     34444433  444444555666778888888865 99999887

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.06  E-value=1.1e-08  Score=79.64  Aligned_cols=121  Identities=13%  Similarity=0.075  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHH
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIG  125 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~  125 (179)
                      .+...++.....+....++|. +++++|++..+.++ .....++..++.+++|+++||+++|        + ....+.+.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r--------~-~~~~~~~~  110 (476)
T PLN00028         41 SWISFFTCFVSTFAAAPLLPI-IRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR--------Y-GSAFLLML  110 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--------H-HHHHHHHH
Confidence            333344444445555555565 56778999999884 6667778889999999999999864        2 23334444


Q ss_pred             hHHHHHHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        126 PAVFLIFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ..+..+.....++.+..++  +..++...........+.+.+|+ +||.+.|+.+
T Consensus       111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~  165 (476)
T PLN00028        111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAA  165 (476)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHH
Confidence            4444444444445444333  33332222222234456787875 5998888764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.06  E-value=2.5e-09  Score=83.25  Aligned_cols=124  Identities=14%  Similarity=0.102  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCcccch-hhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhhHHHH
Q psy10147         43 SLWSVYIAHFAMNWSTYIIMQWLPTYMSSY--LGANSHSLS-FTAMPYVLNSLFCIVAGHFADN-LVSHSWTVLTVRRLM  118 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr-~~~r~~~~~~~r~~~  118 (179)
                      .++.+.+..++...++|++..++|.|+++.  +|++..+++ +.....+...++.+++|+++|| +++|         ..
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~---------~~   81 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK---------KT   81 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH---------HH
Confidence            356777778888899999999999999987  899999999 4777778899999999999999 6653         33


Q ss_pred             HHHHhHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch----hHHHHHHH
Q psy10147        119 TSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN----HAGVTFAI  175 (179)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~----~~g~~~gi  175 (179)
                      +..+.+...+....+...++.+...+  ...+. .+...+...+...+.+|+    +|+.+.++
T Consensus        82 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~  145 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTL  145 (475)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehh
Confidence            44555555555555554444333322  22222 223345567777777753    25555554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10504 putative transporter; Provisional

Probab=99.04  E-value=8.5e-09  Score=80.01  Aligned_cols=133  Identities=9%  Similarity=0.041  Sum_probs=84.4

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhH
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVR  115 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r  115 (179)
                      ++++|+.++...+..++..........+.|.|++..+|+++.++++ .....+...++.++.|+++||+++|        
T Consensus       256 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~--------  327 (471)
T PRK10504        256 KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR--------  327 (471)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--------
Confidence            5889999988888888877777777788999999888999998885 4444555667778999999999764        


Q ss_pred             HHHHHHHhHHhHHHHHHHhhc---chHHHHHH--HHH-HHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        116 RLMTSIGLIGPAVFLIFFCAV---DNLLFAVI--ISM-GLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      +. ...+.....+....+...   ++.+....  ... ...+...+.......+..|++ +|.+.|+.++
T Consensus       328 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  396 (471)
T PRK10504        328 RV-LVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSM  396 (471)
T ss_pred             HH-HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHH
Confidence            22 222333332222222221   22221111  222 223333555667777777655 8888887664

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.03  E-value=1.6e-08  Score=76.79  Aligned_cols=138  Identities=12%  Similarity=0.033  Sum_probs=82.4

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .+++++++++.++...+..+........+..+.|.++++.+|+++.+.++ ...+.++..++.++.+++.||.+++    
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~----  273 (394)
T PRK11652        198 ASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL----  273 (394)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            45677888998887666666666666667778899999989999888774 5555566667777777777776421    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhh--cchHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCA--VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                          ............+.......  ..+.+....   +.....+...+...+...+..|+++|++.++.+.
T Consensus       274 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  341 (394)
T PRK11652        274 ----MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGG  341 (394)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence                12121222222222211111  112232222   2222233345566777778888888888887763

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.03  E-value=5.3e-09  Score=80.46  Aligned_cols=125  Identities=17%  Similarity=0.245  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      ++...+..++.....+.+..++|.+.++ +|+|+.+.+ +.....++..++.+++|+++||+++|         ..+..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~~~~~   94 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR---------YFMGIG   94 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc---------hhHHHH
Confidence            4445555555555566778888987665 899999988 47778888999999999999999764         233445


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      .+...+..+.....++.+...+  +..+ ..+...+...+.+.+.+|+ +||.+.|+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~  154 (434)
T PRK11663         95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNT  154 (434)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5555545554444555544333  2222 2333455667788888876 49999888753

>PRK10504 putative transporter; Provisional

Probab=99.02  E-value=1.5e-08  Score=78.63  Aligned_cols=126  Identities=17%  Similarity=0.223  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      +.+|...+..++.....+.+..++|.+.++ +|.++.+.++ .....+...++.+++|+++||+++|        +. ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--------~~-~~   79 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR--------NI-FF   79 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH--------HH-HH
Confidence            456777888888888888888999998865 8999998884 5566677789999999999999865        22 22


Q ss_pred             HHhHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        121 IGLIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+.+...+........++.+..++  +..++ .+...+...+.+.|..|++ ++.+.|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (471)
T PRK10504         80 TAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVT  140 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            333333333333333444444333  22222 2233455677788888765 888877664

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.01  E-value=1.6e-08  Score=82.10  Aligned_cols=85  Identities=13%  Similarity=0.068  Sum_probs=55.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--H-HHHHHHhhhhchhhhh
Q psy10147         85 MPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--I-SMGLSAFNSAGFLASH  161 (179)
Q Consensus        85 ~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~  161 (179)
                      +..++..+|.+++|+++||++||         ..+..+.++.++..+.+....+....++  + ..++.+...+..++++
T Consensus       603 l~~l~~i~G~il~g~L~Dr~GRr---------~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~  673 (742)
T TIGR01299       603 LGTLAVLPGNIVSALLMDKIGRL---------RMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLT  673 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44467788999999999999854         3344555555555555544443333222  2 2222333456678899


Q ss_pred             hhccchh-HHHHHHHhhc
Q psy10147        162 ADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       162 ~~~~~~~-~g~~~gi~~~  178 (179)
                      +|.+|.+ ||++.|+.++
T Consensus       674 aEl~Pt~~Rgta~Gi~~~  691 (742)
T TIGR01299       674 VELYPSDKRATAFGFLNA  691 (742)
T ss_pred             HHHcCHHHHHHHHHHHHH
Confidence            9999976 9999998764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.01  E-value=3.5e-08  Score=75.04  Aligned_cols=71  Identities=7%  Similarity=0.031  Sum_probs=53.8

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHH
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNL  104 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~  104 (179)
                      +.++++++|.+|...+..++.....+....+.+.++.+++|+++.+.++ .....++..++.++.+++.||.
T Consensus       208 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~  279 (394)
T PRK10213        208 NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS  279 (394)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3567889999998877777777777777777755455678999988884 6666677888888888888874

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.00  E-value=5.4e-09  Score=80.23  Aligned_cols=135  Identities=14%  Similarity=0.139  Sum_probs=83.4

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      .+++++++|.++...+..++.....+....+.+.|.+..++ ++.+.+ +..+..+...++.++.++++||+++|     
T Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----  287 (437)
T TIGR00792       214 IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----  287 (437)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence            46678889999988888888877777777777777766555 444455 45566788889999999999999754     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhc-chHHHHHH---HHHHHHHhhhhchhhhhhhccc--------hhHHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAV-DNLLFAVI---ISMGLSAFNSAGFLASHADIAP--------NHAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~gi~~~  178 (179)
                         +. ...+.+...+........ ++.+..++   +.....+...+..++...|..+        +++|.+.|+.|+
T Consensus       288 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  361 (437)
T TIGR00792       288 ---IL-FAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF  361 (437)
T ss_pred             ---HH-HHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence               22 223333333333333222 23232222   2222233345556777777643        347888887764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.00  E-value=2.7e-08  Score=75.27  Aligned_cols=127  Identities=7%  Similarity=-0.017  Sum_probs=84.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q psy10147         41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMT  119 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~  119 (179)
                      ++.++...+..+...........++|.|.++ +|.|..+.| ......++..++.++.|+++||+++|         ...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k---------~~~   74 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN---------RSY   74 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---------HHH
Confidence            3557778888888878888888999998875 799999999 47788889999999999999999864         233


Q ss_pred             HHHhHHhHHHHHHHhhcchHHHHHH--HHHHHH-Hhhhhchhhhhhhccc-hhHHHHHHHhh
Q psy10147        120 SIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLS-AFNSAGFLASHADIAP-NHAGVTFAISN  177 (179)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-~~~g~~~gi~~  177 (179)
                      ..+.+...+........++.+..++  +..+.. +...+.......+..+ ++|+.+.|+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (381)
T PRK03633         75 YLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYM  136 (381)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3455555444444444555554433  322222 2223333344455554 45888877654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.99  E-value=2.8e-08  Score=75.34  Aligned_cols=73  Identities=11%  Similarity=-0.010  Sum_probs=59.0

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhH-HHHHHHHHHHHHHHHHHHhc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPY-VLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~-~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ++++++|+|.++......++..........+.|.|+++ .|+++++.|+ ..... ....++.+++|++.||+++|
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            56788999988888877778777788888899999987 6999999994 44444 46677888999999999764

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.99  E-value=3.2e-08  Score=75.06  Aligned_cols=74  Identities=5%  Similarity=-0.051  Sum_probs=58.1

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ..++.+++++++...+...+.......+..+.|.++++.+|+++.+.+ +.....+...++.++.+++.||+++|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~  269 (392)
T PRK10473        195 ENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR  269 (392)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            345678888887766665555555666778889999998999998888 46677788889999999999999754

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.98  E-value=5e-09  Score=89.25  Aligned_cols=136  Identities=17%  Similarity=0.227  Sum_probs=89.9

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-cch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSH-SLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~-~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .++.+++++.++...+..++.....+.+..++|.|+++.+|++.. +.+ +.....++..++.+++|+++||++++    
T Consensus       224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~----  299 (1146)
T PRK08633        224 NLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL----  299 (1146)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc----
Confidence            466678888888877777777777778889999999999999988 778 46667777888889999998887643    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                         +  ...++.++..+..+.+....+.+..++  +..+ ..+.......+.+.+..|++ +|++.|+.++
T Consensus       300 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~  365 (1146)
T PRK08633        300 ---G--LVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF  365 (1146)
T ss_pred             ---c--chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence               1  122233333333333333333333323  2222 22333455677888887765 9998887764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.97  E-value=1.8e-08  Score=78.92  Aligned_cols=136  Identities=14%  Similarity=0.216  Sum_probs=75.4

Q ss_pred             CcHHHHhhc---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-------------hhhhhHHHHHH
Q psy10147         33 PRWISFISH---WS----LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-------------FTAMPYVLNSL   92 (179)
Q Consensus        33 ~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-------------l~~~~~~~~~i   92 (179)
                      .++++++++   ++    .+......++....+|+...|.|.++++ .|+++.+++             ...+..++..+
T Consensus       272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  350 (502)
T TIGR00887       272 ASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVP  350 (502)
T ss_pred             hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            357777753   22    2223334455566778888899999975 688765322             11222345566


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc----ch-HHHHHH-HHHHHHHh-hhhchhhhhhhcc
Q psy10147         93 FCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV----DN-LLFAVI-ISMGLSAF-NSAGFLASHADIA  165 (179)
Q Consensus        93 g~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~  165 (179)
                      +.+++++++||++||         .....+.++..+....+...    .. ....+. +...+.+. ..+..+.+..|.+
T Consensus       351 g~~~~~~l~dr~gRR---------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       351 GYWVTVFLVDIIGRK---------PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHhhhhcch---------hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            888999999999865         22222333333222222211    11 111111 22122222 2345677789999


Q ss_pred             chh-HHHHHHHhhc
Q psy10147        166 PNH-AGVTFAISNT  178 (179)
Q Consensus       166 ~~~-~g~~~gi~~~  178 (179)
                      |.+ |+++.|+.++
T Consensus       422 p~~~R~~~~g~~~~  435 (502)
T TIGR00887       422 PTRYRSTAHGISAA  435 (502)
T ss_pred             chhHHHHHHHHHHH
Confidence            977 9999998774

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.97  E-value=1.1e-08  Score=78.43  Aligned_cols=71  Identities=13%  Similarity=0.232  Sum_probs=64.0

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ..++++++|...+..++...+++....++|.|+++++|+|+.+.| ......+...++.++.|+++||+++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r   76 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLK   76 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            356788999999999998888888999999999999999999999 58888899999999999999999865

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.96  E-value=3.2e-08  Score=80.42  Aligned_cols=107  Identities=15%  Similarity=0.044  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchH
Q psy10147         61 IMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNL  139 (179)
Q Consensus        61 ~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  139 (179)
                      +...+|. +++.+|++..+.+ +.....++.++|.+++|+++||++||         ..+..+.++..+..++....++.
T Consensus       186 is~ilp~-i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR---------~~lii~lil~~i~~ll~afa~s~  255 (742)
T TIGR01299       186 VGFVLPS-AEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK---------QCLLICLSVNGFFAFFSSFVQGY  255 (742)
T ss_pred             HHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHHhhH
Confidence            3444554 5667899998888 57778899999999999999999864         22333444444344444444444


Q ss_pred             HHHHH--HHH-HHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        140 LFAVI--ISM-GLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       140 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      +..++  +.. ...+...+...+++.|..|++ ||...++.+
T Consensus       256 ~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~  297 (742)
T TIGR01299       256 GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC  297 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            44333  222 233344667889999999865 888877654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.96  E-value=8.5e-08  Score=73.38  Aligned_cols=129  Identities=7%  Similarity=-0.002  Sum_probs=81.7

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYL-GANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      ++++++++|+++...+..++......+..++++.|.++.. +.+...++ +.........+|.++++++.||+++|    
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~----  299 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH----  299 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----
Confidence            4567889999998888888887777788899999997632 33333334 45555677889999999999998653    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcchHHHHH-H-HHHHHHHhhhhchhhhhhhccchhHHH
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAV-I-ISMGLSAFNSAGFLASHADIAPNHAGV  171 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~g~  171 (179)
                          +.+. ...+...+........++..... + +..++.+..++..++...+..++++..
T Consensus       300 ----~~l~-i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~  356 (410)
T TIGR00885       300 ----KVLM-AYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY  356 (410)
T ss_pred             ----HHHH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence                3333 23333333333333333322222 2 333344444677788888877776433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.95  E-value=4.4e-08  Score=74.13  Aligned_cols=125  Identities=6%  Similarity=0.039  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      +...++..+......+......|. +++++|+++.+.+ +.....++..++.++.|+++||++||        + .+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r--------~-~~~~~   83 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR--------L-PMVTS   83 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH--------H-HHHHH
Confidence            445666666666666666677776 5677999999999 57788889999999999999999864        2 23334


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      .+...+..+.....++.+..+.  +..+ ..+...+...+.+.|..|+ +|+.+.++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  143 (405)
T TIGR00891        84 IVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLIS  143 (405)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHH
Confidence            4444444444444445444333  2222 2233455567778888875 48888887653

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.95  E-value=3.3e-08  Score=75.64  Aligned_cols=125  Identities=11%  Similarity=-0.064  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      ++...+.+++...-...+.+..| .+++++|++..+.| +.....++..++.+..|+++||+++|         ..+..+
T Consensus        10 ~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r---------~~~~~~   79 (412)
T TIGR02332        10 IIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR---------RWIAGI   79 (412)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH---------HHHHHH
Confidence            34444555555555555566666 68888999999999 47788888999999999999999864         233445


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      .+...+........++.+..++  +..++ .+...+.....+.|.+|+ +||.+.|+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  139 (412)
T TIGR02332        80 MVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMI  139 (412)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            5555545554555555544433  33332 223345556778888876 59999888753

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.95  E-value=4.5e-08  Score=72.43  Aligned_cols=129  Identities=21%  Similarity=0.314  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      |.++...+..++..........+.|.++++.+|.+..+.+ ......++..++.++.++++||+++|       ++ ...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~  246 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-------RL-LLL  246 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hH-HHH
Confidence            5566677777777888888899999999998899999888 57778888999999999999999764       21 333


Q ss_pred             HHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        121 IGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      .+.+...+........++.+....   +.....+...+...+...|..|+ ++++..|+.+.
T Consensus       247 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (352)
T cd06174         247 IGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNT  308 (352)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHH
Confidence            444444444444444444333333   22223334456678888898885 59999888764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.95  E-value=6.8e-08  Score=73.43  Aligned_cols=125  Identities=18%  Similarity=0.275  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-----h-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHH
Q psy10147         43 SLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSL-----S-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRR  116 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~-----g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~  116 (179)
                      .+...++..++..........++|.|+++ +|++..+.     | ...+..+...++.++.|+++||+++|        +
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~   85 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK--------I   85 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH--------H
Confidence            34455566666677777788899998866 78886653     5 36677788899999999999999754        2


Q ss_pred             HHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        117 LMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      . +..+.+...+........++.+..++  +..++.+...+.......+..|++ ++.+.|+.+
T Consensus        86 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (408)
T PRK09874         86 M-LLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLS  148 (408)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHH
Confidence            2 33344444444444444444444333  333332323444556666777654 888877664

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.94  E-value=3.7e-08  Score=72.59  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         36 ISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ..++|+|.-|...+...+++..+|....|+|.+++|. |+|..++| +..+..+...+.++....+++|..++
T Consensus       202 ~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~  273 (395)
T COG2807         202 RKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ  273 (395)
T ss_pred             cccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3578999999999999999999999999999999985 99999999 68888889999999999999996543

>PRK12382 putative transporter; Provisional

Probab=98.94  E-value=2e-08  Score=76.11  Aligned_cols=66  Identities=18%  Similarity=0.285  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +.++...+..+............+|.|+++++|+|..+.| +.....+...+++++.|+++||+++|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r   81 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAK   81 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcch
Confidence            3455566666666666777788899999999999999999 57788889999999999999999865

>PRK03699 putative transporter; Provisional

Probab=98.94  E-value=5.9e-08  Score=73.76  Aligned_cols=123  Identities=8%  Similarity=0.023  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      ++...+..++.......+...+|.+ .+++|+|..+.+ ......++..++.+++|+++||+++|         ..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r---------~~~~~~   78 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPI-AEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK---------RQLIFG   78 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------HHHHHH
Confidence            4555555555555566677778885 556899999988 47778888999999999999999864         233344


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                      .+...+........++.+..++  ...+ ..+...+...+.+.+..|++ |+.+.++.
T Consensus        79 ~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~  136 (394)
T PRK03699         79 FALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFT  136 (394)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHH
Confidence            4444444444444455544333  2222 23333455667778888754 88776654

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.93  E-value=6e-09  Score=79.78  Aligned_cols=130  Identities=11%  Similarity=0.091  Sum_probs=75.1

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYL---GANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSW  109 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~  109 (179)
                      +.++++++|++|...+..++....+.....+.|.|+.+.+   +.+..+.+ +..+..+...++.+++|+++||+++|  
T Consensus       215 ~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--  292 (420)
T PRK09528        215 DALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK--  292 (420)
T ss_pred             HHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--
Confidence            3556788998877666555555555556667898888764   34445556 46666777889999999999999865  


Q ss_pred             chhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHH
Q psy10147        110 TVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVT  172 (179)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~  172 (179)
                            +. ...+.+...+........++.+..+.  +..+ ..+........+..+..|++ +++.
T Consensus       293 ------~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~  352 (420)
T PRK09528        293 ------NA-LLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATI  352 (420)
T ss_pred             ------hh-hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeee
Confidence                  22 22333333333333444445553333  2111 22222233445566666554 5544

>PRK09848 glucuronide transporter; Provisional

Probab=98.93  E-value=1.1e-08  Score=78.90  Aligned_cols=136  Identities=14%  Similarity=0.106  Sum_probs=85.3

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhh-HHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMP-YVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl~~~~-~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      .++++++||.++...+..++.....+....+.|.|+++.+|.+....++...+ .+...++.++.++++||+++|     
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----  294 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----  294 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence            47789999999999888888888888888889999999889877655553343 456778889999999998753     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcc--hHHHHHH---HHHHHHHhhhhchhhhhhhccch--------hHHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVD--NLLFAVI---ISMGLSAFNSAGFLASHADIAPN--------HAGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~gi~~~  178 (179)
                         +.+ ..+.+...+....+...+  +.+..+.   +.....+...+..++...|..+.        +.|...|+.++
T Consensus       295 ---~~~-~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~  369 (448)
T PRK09848        295 ---NTF-LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSF  369 (448)
T ss_pred             ---HHH-HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence               222 233333333222222222  2332222   11112233345567777776642        24777777654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.93  E-value=9.9e-08  Score=72.18  Aligned_cols=73  Identities=12%  Similarity=0.058  Sum_probs=55.0

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +++++++++.++......+...........++|.|+++ .|.++.+++ +.....+...++.+..|+++||+++|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  265 (381)
T PRK03633        192 SIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL  265 (381)
T ss_pred             CHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence            45678888887765544444444455566789999987 599988888 56777788899999999999999753

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.92  E-value=4.2e-09  Score=89.78  Aligned_cols=73  Identities=12%  Similarity=0.141  Sum_probs=62.4

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      .++.+.+++.+|...+..++.....+.+..++|.|+++.+|.++.+.| +.....++..+|.++.|+++|+..+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~  290 (1140)
T PRK06814        217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRIT  290 (1140)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
Confidence            466788899999988888888888888899999999999999999988 4777788889999999999876543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.91  E-value=2.6e-08  Score=76.54  Aligned_cols=138  Identities=15%  Similarity=0.169  Sum_probs=91.4

Q ss_pred             CCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         32 GPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      +..++++++||.++...+..++............+.|.+...|.+.....+.....+...++.++.++++||+++|    
T Consensus       215 ~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~----  290 (428)
T PF13347_consen  215 RDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK----  290 (428)
T ss_pred             ccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce----
Confidence            4457788999999999999998888888888889999998888874333356677788899999999999999875    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhc--chHHHHHH---HHHHHHHhhhhchhhhhhhccc--------hhHHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAV--DNLLFAVI---ISMGLSAFNSAGFLASHADIAP--------NHAGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~gi~~~  178 (179)
                         +  ....+.+...+........  ++.+..++   +.....+......++..+|..+        ++.|...|+.++
T Consensus       291 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~  365 (428)
T PF13347_consen  291 ---K--VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF  365 (428)
T ss_pred             ---e--ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence               2  2223333333333333322  34444333   2222334445667888888764        125776666553

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.90  E-value=6e-08  Score=72.02  Aligned_cols=122  Identities=26%  Similarity=0.383  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHh
Q psy10147         48 YIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGP  126 (179)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~  126 (179)
                      ++..++...........+|.++.+++|.++.+.+ +.....+...++.++.|+++||+++|        + ....+.+..
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~-~l~~~~~~~   72 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR--------R-VLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--------H-HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe--------e-eEeehhhhh
Confidence            3455566666666777888678888999999999 47778889999999999999999764        3 444455555


Q ss_pred             HHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        127 AVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      .+......+.++.+..++  +..+. .+...+...+.+.|..|+ +|+.+.++.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  128 (352)
T PF07690_consen   73 ALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSA  128 (352)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHH
T ss_pred             hhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence            544233333344443333  33333 245567788889999887 59888887653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.90  E-value=5e-09  Score=84.12  Aligned_cols=74  Identities=12%  Similarity=0.167  Sum_probs=64.5

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHH-HHHHHHHHHHHHHHHHHhc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYV-LNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~-~~~ig~~~~g~l~dr~~~r  107 (179)
                      .++++++||.++...+..++.....+++.+|+|.|+++++|+++.+++ +..+..+ +..+|.+++|+++||++.+
T Consensus       322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            466789999999999999999999999999999999999999999999 4555444 5678999999999998644

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.90  E-value=2.6e-08  Score=75.76  Aligned_cols=134  Identities=13%  Similarity=0.044  Sum_probs=79.2

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      ++.+++++.+........+...........+|.|+++.+|+++.+.|+ .....++..+++++.+++.||.+++      
T Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~------  271 (393)
T PRK11195        198 CRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL------  271 (393)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------
Confidence            456778887665555544445555666777888999999999999884 6666677778888887777764432      


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh--HHHHHHHhhc
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH--AGVTFAISNT  178 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~--~g~~~gi~~~  178 (179)
                        +. ...+... +.....+...++.+....  +..+ ..+.......+..++..|++  +|.+.|+.|+
T Consensus       272 --~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~  337 (393)
T PRK11195        272 --RV-LPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNF  337 (393)
T ss_pred             --ch-HHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhH
Confidence              12 2223222 222222232333333222  2222 22333445667777776664  6888887764

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.89  E-value=7.5e-08  Score=73.74  Aligned_cols=124  Identities=12%  Similarity=0.113  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      +....+..+......+......|. +++++|.++.+.+ ......++..++.++.|+++||+++|         ..+..+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r---------~~l~~~   89 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYL-IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK---------PLMMWS   89 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHH
Confidence            445555555555555555556665 5677899999988 47778889999999999999999764         334445


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+...+........++.+..++  ...++ .+...+.....+.|..|++ |+.+.++.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  148 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLV  148 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHH
Confidence            5555555544444555544444  32222 2334555677788888765 888877654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.88  E-value=7.1e-08  Score=74.97  Aligned_cols=137  Identities=13%  Similarity=0.093  Sum_probs=92.1

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      .+|++.++|....+.+.+++..-+..++......|.++++|++..+.. +..+..+.+.+|++++|++.||++.|     
T Consensus       273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k-----  347 (477)
T PF11700_consen  273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK-----  347 (477)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----
Confidence            344556678899999999999999999999999999999999999877 46677788999999999999999854     


Q ss_pred             hhHHHHHHHHhHHh-HHHHHHHh-----h--cchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        113 TVRRLMTSIGLIGP-AVFLIFFC-----A--VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       113 ~~r~~~~~~~~~~~-~~~~~~~~-----~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                        ++......++.. .+....+.     .  .++.+...+   +.....|...+..-++..++.|+. .+.-.|+.+
T Consensus       348 --~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~  422 (477)
T PF11700_consen  348 --TKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYA  422 (477)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence              112222222222 11111111     0  223332222   222334444666788888888865 676666654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.88  E-value=1.3e-07  Score=71.98  Aligned_cols=122  Identities=7%  Similarity=0.017  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhH
Q psy10147         46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLI  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~  124 (179)
                      ...+..++.....|.....+|.+. +++|+++.+.+ ......+...++.++.|+++||++||         ..+..+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr---------~~~~~~~~   93 (394)
T PRK10213         24 SVAFCVACLIIVEFLPVSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR---------YVVILFAV   93 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH---------HHHHHHHH
Confidence            334444444445555566677754 56899999999 47777888889999999999999764         33334444


Q ss_pred             HhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        125 GPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ..++..+.....++.+..++  +..+ ..+...+...+.+.|..|++ ++.+.++..
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~  150 (394)
T PRK10213         94 LLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIF  150 (394)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHH
Confidence            44444444444555554444  3333 23334566777888888754 888887764

>TIGR00889 2A0110 nucleoside transporter

Probab=98.87  E-value=1.1e-07  Score=73.01  Aligned_cols=133  Identities=12%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--------ccch-hhhhhHHHHHHHHHHHHHHHHHHH
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANS--------HSLS-FTAMPYVLNSLFCIVAGHFADNLV  105 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~--------~~~g-l~~~~~~~~~ig~~~~g~l~dr~~  105 (179)
                      .++++|+|+++...+..++..........+.|.|+++ .|.++        ...+ ...+..+...++.+..|+++||++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g  279 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG  279 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4578889998887777777666666666788888876 46554        3345 355666777888899999999997


Q ss_pred             hcCCchhhhHHHHHHHHhHHhHHHHHHHhhcc-hH---HHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        106 SHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVD-NL---LFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       106 ~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      +|         ..+..+.+...+....+.... +.   +..++  +..+ ..+...+.....+.|..|++ +|++.|+.+
T Consensus       280 ~r---------~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~  350 (418)
T TIGR00889       280 IK---------KVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFT  350 (418)
T ss_pred             cH---------HHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            53         333344444444433333222 11   21111  1121 22233445567778888865 999988875

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.87  E-value=3e-08  Score=75.31  Aligned_cols=67  Identities=21%  Similarity=0.286  Sum_probs=56.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ++++....+..+............+|.++++++|.|+.+.| ......++..++.++.|+++||+++|
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r   81 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPK   81 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCc
Confidence            35566677777777777777888999999999999999999 47888899999999999999999875

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.86  E-value=1.5e-07  Score=70.28  Aligned_cols=131  Identities=11%  Similarity=0.102  Sum_probs=94.6

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      ...+++++|.++...+..+++-...-....|++.|+.+..|++..++. +....+++.++|..++.++..|+..      
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~------  301 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP------  301 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH------
Confidence            467899999999999999999999999999999999998888988888 5788889999999999888887743      


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccchhHHHHH
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPNHAGVTF  173 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  173 (179)
                        .|.+...+ +...+.++.....++.+....  +...+.+..++...+...+..|++...+.
T Consensus       302 --~k~Laf~a-~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s  361 (422)
T COG0738         302 --EKYLAFYA-LIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGS  361 (422)
T ss_pred             --HHHHHHHH-HHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccc
Confidence              34444333 333333444444555443333  44445566677777777777776644443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.86  E-value=1.2e-07  Score=72.30  Aligned_cols=75  Identities=9%  Similarity=0.088  Sum_probs=55.1

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhh-HHHHHHHHHHHHHHHHHHHhc
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMP-YVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~-~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .++++++++|.++...+..++..........+.+.++.+++|+++.+.++ .... .++..++.+++|++.||+++|
T Consensus       200 ~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~  276 (402)
T PRK11902        200 GPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY  276 (402)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            35778899999887777666655544444455666788888999988884 4343 345788999999999999754

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.85  E-value=6.2e-08  Score=76.08  Aligned_cols=136  Identities=18%  Similarity=0.183  Sum_probs=84.4

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      .++-+.++|.+....+..++.+.....+...+|.+.++.+|.++...| +.....++..+|.++.+++.+|+.++     
T Consensus       210 G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----  284 (524)
T PF05977_consen  210 GLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----  284 (524)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----
Confidence            344455567766665555555555556677799999999999988877 46666666667666666665554321     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH-HH-HH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI-IS-MG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                         + +...+.+..++.++.+...++.+.... +. .| ..........+..+...|++ +|.+.++.++
T Consensus       285 ---~-lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~  350 (524)
T PF05977_consen  285 ---R-LVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQM  350 (524)
T ss_pred             ---h-hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHH
Confidence               2 223344444555555566666555444 21 12 22233445677888888887 9999988764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.85  E-value=1.2e-07  Score=71.72  Aligned_cols=71  Identities=14%  Similarity=0.237  Sum_probs=56.9

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +.++++..|...+..++.....+....+.|.|+++.+|+++.+.+ +.....++..++.++.|++.||+++|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~  265 (382)
T PRK10091        194 HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL  265 (382)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence            466788888776666666666666677888889888899999888 46777788999999999999998754

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.85  E-value=7e-08  Score=73.88  Aligned_cols=69  Identities=4%  Similarity=-0.018  Sum_probs=54.1

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHH
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFA  101 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~  101 (179)
                      .+++++++||.+|...+..++.....+.+..+.|.++++.+|+++.+.++ ......+..++..+.+++.
T Consensus       209 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~  278 (413)
T PRK15403        209 RDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFV  278 (413)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35778899999999888888888888888899999999999999999885 4444555556555555543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.85  E-value=8.7e-08  Score=72.82  Aligned_cols=67  Identities=13%  Similarity=0.233  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ||.+|.+....++...++..+..++|.|+++++|+++.+.| ......+...++.+..|+++||++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr   68 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLK   68 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            57889999999999999999999999999999999999999 58888999999999999999999865

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.85  E-value=6.4e-08  Score=72.14  Aligned_cols=121  Identities=18%  Similarity=0.166  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHH
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIG  125 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~  125 (179)
                      ..+..+....+.......+|.|..+ .+.++.+.+ +.....++..++.++.|+++||++||        +. +..+.+.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r--------~~-~~~~~~~   73 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK--------KV-MIGADLI   73 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh--------HH-HHHHHHH
Confidence            4455566666666677788887766 688988888 47778888999999999999999864        22 2233333


Q ss_pred             hHHHHHHHhhcc-----hHHHHHH--HHH-HHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        126 PAVFLIFFCAVD-----NLLFAVI--ISM-GLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       126 ~~~~~~~~~~~~-----~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ..+.........     +.+..++  +.. ...+...+...+...|..|++ |+.+.|+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (365)
T TIGR00900        74 RAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQ  134 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHH
Confidence            222222222222     4443333  222 233344566788889988764 888887765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.84  E-value=1.7e-07  Score=71.54  Aligned_cols=135  Identities=12%  Similarity=0.072  Sum_probs=74.8

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHH-HHhcCCch
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADN-LVSHSWTV  111 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr-~~~r~~~~  111 (179)
                      ++++++++++++...+..+...........++|.|+++..+ ++.+.+ +.....++...+....+++.|| ...     
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~-----  273 (400)
T PRK11646        200 GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRL-----  273 (400)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            57788899988766655555444444456789999988655 666667 4555555554444444555544 321     


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                         ++. ...+.+...+....+...++.+..+.  ...+ ..+...+...+.+.+..|+ ++|++.|+.++
T Consensus       274 ---~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~  340 (400)
T PRK11646        274 ---EHR-LMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRL  340 (400)
T ss_pred             ---hHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHH
Confidence               222 22333333333333334444433322  1121 2223345567778888875 49999888764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.84  E-value=4.4e-08  Score=74.94  Aligned_cols=135  Identities=14%  Similarity=0.111  Sum_probs=84.1

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .+++.+.+++.++...+..++...+.......+|.+.++ ++.++.+.|+ .....+...++.++.|+++||+++|... 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l-   85 (417)
T PRK10489          8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI-   85 (417)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE-
Confidence            355555678888887777777777777778888988766 5778888884 7777888899999999999999876221 


Q ss_pred             hhhHHHHHHHHhHHhHHHHHH-----HhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIF-----FCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                              ..+.+..++....     +...++.+...+  +..++ .+...+...+...+..|++ ++.+.++.+
T Consensus        86 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (417)
T PRK10489         86 --------LLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITM  152 (417)
T ss_pred             --------EehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence                    1111111111111     111223333322  22222 2333455567777877654 788777654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.84  E-value=5.5e-08  Score=76.01  Aligned_cols=117  Identities=12%  Similarity=0.020  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhhHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADN-LVSHSWTVLTVRRLMT  119 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr-~~~r~~~~~~~r~~~~  119 (179)
                      +.+|..++..++...++|++..+++.|+++.+|++..++. ..........+..+++|+++|| +++|         ...
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r---------~~~   84 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK---------RTI   84 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH---------HHH
Confidence            3467778888889999999999999999999999998877 3555566677777899999999 7754         233


Q ss_pred             HHHhHHhHHHHHHHhhcchHHH-HHH---HHHHHHHhhhhchhhhhhhccch
Q psy10147        120 SIGLIGPAVFLIFFCAVDNLLF-AVI---ISMGLSAFNSAGFLASHADIAPN  167 (179)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~  167 (179)
                      ..+.+...+..+......+... .++   +.....+...+...+.+.|.+|+
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~  136 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPP  136 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCC
Confidence            3444444444443333332222 212   21122233455667888888864

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.84  E-value=6.8e-08  Score=73.41  Aligned_cols=74  Identities=12%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYL---GANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +++++++|+++|...+..++....+.....+.|.|+++.+   +.+....| +..+..+...++.+..|++.||+++|
T Consensus       207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~  284 (396)
T TIGR00882       207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK  284 (396)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5778999999887777666665666667778899998875   34444556 46666777888889999999999865

>TIGR00895 2A0115 benzoate transport

Probab=98.84  E-value=1e-07  Score=71.83  Aligned_cols=122  Identities=12%  Similarity=0.104  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHH
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIG  125 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~  125 (179)
                      ..+..+......+......|.+. +++|+++.+.+ +.....++..++.++.|+++||+++|         .....+.+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~   91 (398)
T TIGR00895        22 SFLIMLMDGYDLAAMGFAAPAIS-AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK---------RVLLWSILL   91 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH---------HHHHHHHHH
Confidence            33344444444555556667654 55899999888 47777788899999999999999854         233334444


Q ss_pred             hHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        126 PAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      ..+........++.+..++  +..+ ..+...+...+.+.|..|++ |+.+.|+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  148 (398)
T TIGR00895        92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFC  148 (398)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhh
Confidence            4444444444444443333  2222 22334566788888988765 8888877653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.84  E-value=2.6e-08  Score=74.49  Aligned_cols=116  Identities=15%  Similarity=0.153  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHH
Q psy10147         52 FAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFL  130 (179)
Q Consensus        52 ~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~  130 (179)
                      .+.....|....+.|. +++++|+|..+.+ ......++..++.+..|+++||++||         .....+.+...+..
T Consensus        13 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r---------~~~~~~~~~~~~~~   82 (377)
T TIGR00890        13 CFTSGYVYTWTLLAPP-LGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPR---------AVAMLGGILYGLGF   82 (377)
T ss_pred             HHHhhHHhhhhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCcc---------chhHHhHHHHHHHH
Confidence            3333446666666666 5667899999999 58888899999999999999999875         22233444444444


Q ss_pred             HHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147        131 IFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       131 ~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                      ......++.+..++  ...+ ..+...........+..|++|+.+.++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (377)
T TIGR00890        83 TFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIII  132 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHH
Confidence            44444445444433  2111 12222333445566666777888887765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.83  E-value=3.1e-08  Score=76.35  Aligned_cols=128  Identities=12%  Similarity=0.111  Sum_probs=76.0

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHH
Q psy10147         40 SHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLM  118 (179)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~  118 (179)
                      +++.++...+...+.......+..+.|. +++ .|+++.+.+ ......++..++.++.|+++||+++|        + .
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~--------~-~   93 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPY-LVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPR--------V-F   93 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHH-HHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCc--------e-e
Confidence            3444555555555555555556667775 455 499999999 47788889999999999999999865        1 2


Q ss_pred             HHHHhHHhHHHHHHHhhc----chHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        119 TSIGLIGPAVFLIFFCAV----DNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      ...+.+...+..+.....    .+.+...+  ...+ ..+...+.....+.|.+|+ +||.+.|+.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~  161 (438)
T TIGR00712        94 LPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNC  161 (438)
T ss_pred             hHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHH
Confidence            223333333333322221    22222222  2222 2233344456677788865 59999888663

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.83  E-value=7.6e-08  Score=73.00  Aligned_cols=124  Identities=10%  Similarity=0.092  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      ++...+..+......+.....+|. +.+++|.++.+.|+ .....++..++.+..|+++||+++|         ..+..+
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~   80 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR---------KLLIGL   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH---------HHHHHH
Confidence            344444444444444444455676 56679999999994 6777778888999999999999864         334445


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHHHH-Hhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMGLS-AFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      .+...+..+.....++.+..++  +..+.. +...+...+...+..|+ +|+.+.|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~  139 (390)
T PRK03545         81 FVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLA  139 (390)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHH
Confidence            5555545454555566655544  333332 23345566777888765 5998888754

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.83  E-value=1.1e-07  Score=72.03  Aligned_cols=125  Identities=10%  Similarity=0.015  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      +.++...+..++.....+.....+|.+ ++++|++..+.+ ......++..++.++.|+++||+++|         ..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~   72 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK---------HILL   72 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH---------HHHH
Confidence            446667777777777777788888885 566899999988 57888899999999999999999754         3334


Q ss_pred             HHhHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHh
Q psy10147        121 IGLIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAIS  176 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~  176 (179)
                      .+.+..++..+.....++.+..++  ...++ .+...+.......+..|+ +++.+.++.
T Consensus        73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (382)
T PRK10091         73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGM  132 (382)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHH
Confidence            455555555555555566555444  32222 222334445666777765 477666653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.83  E-value=1.2e-07  Score=73.32  Aligned_cols=106  Identities=14%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc---
Q psy10147         61 IMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV---  136 (179)
Q Consensus        61 ~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---  136 (179)
                      +...+|. +++. |+++.+.++ .....++..++.+++|+++||+++|         ..+..+.++.++........   
T Consensus        48 ~~~~~p~-l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k---------~~l~~~~~~~~i~~~~~~~~~~~  116 (452)
T PRK11273         48 FALAMPY-LVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR---------VFLPAGLILAAAVMLFMGFVPWA  116 (452)
T ss_pred             HHHhhHH-HHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc---------hhHHHHHHHHHHHHHHHHhhhcc
Confidence            4456664 6666 999999994 7778888999999999999999865         23333444443333333322   


Q ss_pred             -chHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        137 -DNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       137 -~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                       .+.+..+.  ...+ ..+...+.....+.+.+|++ |+.+.|+.+
T Consensus       117 ~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~  162 (452)
T PRK11273        117 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN  162 (452)
T ss_pred             cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHH
Confidence             12322222  2222 22333444456667777654 999888764

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.82  E-value=5.8e-08  Score=75.81  Aligned_cols=110  Identities=16%  Similarity=0.166  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhh-c-
Q psy10147         60 IIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCA-V-  136 (179)
Q Consensus        60 ~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~-  136 (179)
                      ....++|.|+++.+|+++.+++ +.....++..++.+++|+++||+++|        +... .+.+...+..+.... . 
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~--------~~~~-~~~~~~~~~~~~~~~~~~  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR--------KAYV-CSLLISQLLIIPVFAIGG  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--------HHHH-HHHHHHHHHHHHHhhccc
Confidence            3567899999888999999988 57777788999999999999999754        2222 233222222222211 1 


Q ss_pred             chHHHHHH--HHHHHHH-hhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        137 DNLLFAVI--ISMGLSA-FNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       137 ~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      .+.+....  ...+..+ .......+...+..|++ +|++.|+.++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  409 (496)
T PRK03893        364 ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYN  409 (496)
T ss_pred             cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhh
Confidence            22222111  1111122 22344566778888765 8988887654

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.81  E-value=2.9e-07  Score=71.89  Aligned_cols=124  Identities=10%  Similarity=0.074  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      +...++..+......+.....+|. +.+++|+|+.+.+ +.....++..++.++.|+++||+++|        + ....+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~-~~~~~   91 (496)
T PRK03893         22 FSAAWLGYLLDGFDFVLITLVLTE-VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR--------L-AMVIS   91 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--------H-HHHHH
Confidence            344455555555555555556666 5567899999888 57777888899999999999999764        2 33344


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+..++..+.....++.+...+  +..++ .+...+.....+.|..|++ ++.+.++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  150 (496)
T PRK03893         92 IVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLI  150 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            4444444444444444444333  22222 2333555677788888765 888877664

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.81  E-value=8.9e-08  Score=72.11  Aligned_cols=121  Identities=12%  Similarity=0.035  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHH
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIG  125 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~  125 (179)
                      ..+..+.............|. +++++|.|+.+.+ ......++..++.++.|+++||+++|        +. ...+.+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r--------~~-~~~~~~~   79 (385)
T TIGR00710        10 LGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR--------PV-LLLGLFI   79 (385)
T ss_pred             HHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh--------HH-HHHHHHH
Confidence            333333334444445555666 4566899999999 47778888999999999999999764        22 3334444


Q ss_pred             hHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        126 PAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ..+..+.....++.+...+  +..+ ..+...+...+.+.|..|++ |+.+.|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (385)
T TIGR00710        80 FALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILM  135 (385)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4444444444455444333  2222 22333555678888888754 888888765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.81  E-value=2.1e-07  Score=70.87  Aligned_cols=124  Identities=8%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      +....+..++.....+......|.+. +++|+++.+.+ +.....++..++.++.|+++||+++|        +. ...+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~~-~~~~   86 (406)
T PRK11551         17 IGLCFLVALLEGLDLQSAGVAAPRMA-QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK--------RI-LIVS   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------hh-HHHH
Confidence            33444555555555666666777755 55899999999 47778888999999999999999865        22 2233


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      .+...+..+.....++.+..++  +..+. .+...+...+.+.|..|+ +|+.+.++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  145 (406)
T PRK11551         87 VALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMY  145 (406)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            3333333333334445544433  33232 233455567888888875 5999888765

>TIGR00897 2A0118 polyol permease family

Probab=98.79  E-value=1.9e-07  Score=71.14  Aligned_cols=126  Identities=15%  Similarity=0.103  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      +.+....++.++...+.+....++|.+++ ++|+++.+.++ .....+...++.+++|+++||+++|        +. +.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k--------~~-l~   82 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLK-ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL--------KT-MM   82 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHH-HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH--------HH-HH
Confidence            44566677777777777777778898885 47999999994 7777788899999999999999864        22 22


Q ss_pred             HHhHHhHHHHHHH---hhc-chHHHHHH--HHHHH-HHhhhhchhhhhhhccc-hhHHHHHHHhh
Q psy10147        121 IGLIGPAVFLIFF---CAV-DNLLFAVI--ISMGL-SAFNSAGFLASHADIAP-NHAGVTFAISN  177 (179)
Q Consensus       121 ~~~~~~~~~~~~~---~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~gi~~  177 (179)
                      .+.....+.....   ... .+.+..+.  ...+. .+.......+...+..| ++|+.+.|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  147 (402)
T TIGR00897        83 IGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFW  147 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3333333322221   222 23333222  22221 12223334455666654 55999988765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.78  E-value=3.8e-07  Score=70.96  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhH
Q psy10147         46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLI  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~  124 (179)
                      .+.+..+............+|.+. +++|.++.+.+ ......++..++.++.|+++||+++|         .....+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~   75 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR---------RLFLISTF   75 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH---------HHHHHHHH
Confidence            344444455455555666777755 55899999888 47778888999999999999999754         33334555


Q ss_pred             HhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        125 GPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ...+........++.+..++  ...++ .+...+...+.+.|..|+ +|+.+.++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  132 (485)
T TIGR00711        76 AFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWG  132 (485)
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            55545554555555554444  33332 333456678888898875 4998888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.78  E-value=1.1e-06  Score=66.89  Aligned_cols=116  Identities=12%  Similarity=0.092  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHH
Q psy10147         51 HFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVF  129 (179)
Q Consensus        51 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~  129 (179)
                      ..+..........|+|.|+++ .|++  +.+ ......++..++.++.|++.||+++|        +. ...+.....+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--------~~-~~~~~~~~~~~  292 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRLGGL--------RV-AIVSLLVEILG  292 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccH--------HH-HHHHHHHHHHH
Confidence            334445566677889998876 4663  345 34556677788899999999998653        22 22333333333


Q ss_pred             HHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        130 LIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      .......++.+..++  +..+ ..+...+.......+..|++ +|++.|+.+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  345 (399)
T PRK05122        293 LLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSV  345 (399)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            333333444433322  2222 12223334445566766654 9999988764

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.77  E-value=1.2e-07  Score=71.19  Aligned_cols=59  Identities=8%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         49 IAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        49 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +..++...+.......+|.|+++++|.|..+.|+ ...+.+...+..++.|+++||+++|
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r   63 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDR   63 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            4456666777778889999999999999999994 7777788888999999999999865

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11043 putative transporter; Provisional

Probab=98.77  E-value=2.5e-07  Score=70.37  Aligned_cols=113  Identities=15%  Similarity=0.080  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHH--HHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHH
Q psy10147         54 MNWSTYIIMQWLPTY--MSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFL  130 (179)
Q Consensus        54 ~~~~~~~~~~~~p~~--l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~  130 (179)
                      .....++...+.|.+  +++++|.++.+.+ ...+..++..++.+++|+++||+++|        + .+..+.+...+..
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r--------~-~~~~~~~~~~~~~   85 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK--------P-VLLAGLSLFALGS   85 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc--------H-HHHHHHHHHHHHH
Confidence            334444455555654  6677899999999 47788888999999999999999865        2 2333443443334


Q ss_pred             HHHhhcchHHHHHH--HHHHHH-Hhhhhchhhhhhhccchh-HHHHHHH
Q psy10147        131 IFFCAVDNLLFAVI--ISMGLS-AFNSAGFLASHADIAPNH-AGVTFAI  175 (179)
Q Consensus       131 ~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~-~g~~~gi  175 (179)
                      ......++.+..++  +..+.. +.......+...|..|++ ++.+.+.
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (401)
T PRK11043         86 LGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFAT  134 (401)
T ss_pred             HHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33444444444333  222221 222334456677777654 5544443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.77  E-value=7.8e-08  Score=72.03  Aligned_cols=126  Identities=13%  Similarity=0.159  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      +++|...+......+.++.+....+. +.+++|+|+.|.+ +.++|.+.+.+..+.-|.+.||++-|        ++.. 
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~~~-i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR--------~~~~-   83 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLGVF-IKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR--------KWTI-   83 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-hccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch--------HHHH-
Confidence            34555555555555555555444444 5688999999999 58999999999999999999999854        3333 


Q ss_pred             HHhHHhHHHHHHHhhcc---hHHHHHH--HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        121 IGLIGPAVFLIFFCAVD---NLLFAVI--ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ++.+...+..+.+.+..   +.+..+.  +..++.|..++...+++..-+|++ .|.+.|+..
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g  146 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG  146 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc
Confidence            34444444444443332   2233333  666667777777888889989876 999999874

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.76  E-value=1.7e-08  Score=75.54  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHH
Q psy10147         51 HFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVF  129 (179)
Q Consensus        51 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~  129 (179)
                      +++.......+....|. +++++|+++.+.+ +.....++..++.++.|+++||+++|         ..+..+.+...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~~~~~~   73 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR---------VFLPIGLILCAIV   73 (379)
T ss_pred             hhHHHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe---------ehhHHHHHHHHHH
Confidence            34444555556666775 6677999999999 47788889999999999999999865         2233444444444


Q ss_pred             HHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        130 LIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+.....++.+..++  +..+ ..+...+...+.+.|..|++ |+.+.|+.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  125 (379)
T TIGR00881        74 NLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWN  125 (379)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehh
Confidence            444444445444433  2222 23344566778888888764 877766554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.76  E-value=3.4e-07  Score=69.46  Aligned_cols=124  Identities=12%  Similarity=0.052  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      +....+..+....+.......+|.+. +++|.+..+.+ ......++..++.++.|+++||++||         ..+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r---------~~l~~~   74 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK---------PVAIPG   74 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh---------HHHHHH
Confidence            34444455555566666667788865 45899998888 46777788889999999999999764         233344


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      .+...+........++.+..+.  +..+. .+......++.+.|..|+ +|+.+.++.+
T Consensus        75 ~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  133 (392)
T PRK10473         75 AALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLN  133 (392)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            4444444444444444443333  22222 223344567788888865 4888877765

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.74  E-value=1.1e-07  Score=70.33  Aligned_cols=122  Identities=16%  Similarity=0.200  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhH
Q psy10147         46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLI  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~  124 (179)
                      ...+..++.....+......|.+.++ +|.++.+.+ ......+...++.++.|+++||++||        + ....+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r--------~-~~~~~~~   72 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR--------R-VLLLGLL   72 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc--------h-hhHHHHH
Confidence            44556667777778888888998765 699998888 47788889999999999999999865        2 3334554


Q ss_pred             HhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        125 GPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ...+........++.+....  +..+ ..+...+...+...|..|+ +|+...++.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (352)
T cd06174          73 LFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFS  129 (352)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHH
Confidence            54444444444444444333  2222 2233456678888888876 5888887765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2504|consensus

Probab=98.74  E-value=3.5e-07  Score=71.67  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=96.3

Q ss_pred             HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q psy10147         36 ISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTV  114 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~  114 (179)
                      +++++++.++...+...+...+++....++|.|.. ..|++..++. +..+..+...++.++.|+++|+...+       
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~-------  363 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR-------  363 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc-------
Confidence            47899999999999999999999999999999988 5799999988 68888899999999999999997533       


Q ss_pred             HHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHH-hhhhchhhhhhhccch-hHHHHHHHh
Q psy10147        115 RRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSA-FNSAGFLASHADIAPN-HAGVTFAIS  176 (179)
Q Consensus       115 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~-~~g~~~gi~  176 (179)
                      ++....++++..++..+......+.+..+.  +.+++.. ...+.....+.|..+. +-..+.|+.
T Consensus       364 ~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~  429 (509)
T KOG2504|consen  364 ALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLL  429 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHH
Confidence            445555666666666655555655544444  3333322 3233344577777653 355555543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.72  E-value=2.9e-07  Score=70.07  Aligned_cols=125  Identities=10%  Similarity=-0.024  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      |.++..++..++...+.......+|.+ .+++|.++.+.++ .....+...+..+++|+++||++||       |  .+.
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr-------~--vl~   72 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKG-------R--VMF   72 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCc-------h--hhH
Confidence            456666666666666555555556655 4567888877774 6677788899999999999999876       2  222


Q ss_pred             HHhHHhHHHHHHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        121 IGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      .+.+..++..+......+.  .+.  +.....+...+...+.+.|..|++ ++.+.|+.++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~  131 (393)
T PRK11195         73 IANGIKLLGCLLMLFGIHP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEG  131 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            2333222222222222222  222  222233445677788999999865 9999888653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.72  E-value=5.2e-07  Score=67.93  Aligned_cols=127  Identities=14%  Similarity=0.074  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      ..++.+.++.|+.....+.....+|..- +++|.|..++| +...+..+..++.++...+.||+.||         ..+.
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA-~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr---------~lLl   82 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIA-ADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR---------RLLL   82 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH---------HHHH
Confidence            3467888999999999999999999955 55899999999 57778889999999999999999764         2333


Q ss_pred             HHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        121 IGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      .......+.-......++.+..++   +.....+..++...+.+.++.|+ +|+.+.|++++
T Consensus        83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~  144 (394)
T COG2814          83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFT  144 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHH
Confidence            333333334444445566666666   44445666788889999999876 49999988753

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.71  E-value=2.5e-07  Score=70.33  Aligned_cols=110  Identities=12%  Similarity=0.049  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc
Q psy10147         58 TYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV  136 (179)
Q Consensus        58 ~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  136 (179)
                      .+.+...+|. +++++|+|..+.+ ....+.++..++.++.|+++||+++|         ..+..+....++........
T Consensus        25 ~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r---------~~l~~~~~l~~~~~~~~~~a   94 (393)
T PRK09705         25 LTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER---------RSVAISLLLIAVGALMRELY   94 (393)
T ss_pred             hhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHC
Confidence            3556677787 5667999999999 47888889999999999999999864         34445666666666666666


Q ss_pred             chHHHHHH--HHHH-HHHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147        137 DNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       137 ~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                      ++.+..++  +..+ ..+.........+.+.+|++|+.+.|+.+
T Consensus        95 ~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~  138 (393)
T PRK09705         95 PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWS  138 (393)
T ss_pred             cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHH
Confidence            66665444  2222 23333444566677777877888877653

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.70  E-value=1.4e-07  Score=70.84  Aligned_cols=111  Identities=14%  Similarity=0.048  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc
Q psy10147         58 TYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV  136 (179)
Q Consensus        58 ~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  136 (179)
                      .+.+....|. +++++|+++.+.+ ......++..++.++.|+++||+++|.         ....+.+...+........
T Consensus        10 ~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~---------~~~~~~~~~~~~~~~~~~~   79 (399)
T TIGR00893        10 RANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK---------TLAVFIVIWGVFTGLQAFA   79 (399)
T ss_pred             HHhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcce---------eeHHHHHHHHHHHHHHHHH
Confidence            3444455555 6777999999999 477888999999999999999998652         1223333333333333444


Q ss_pred             chHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        137 DNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       137 ~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      ++.+..++  +..+ ..+...+.....+.|..|++ |+.+.++.+.
T Consensus        80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  125 (399)
T TIGR00893        80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNS  125 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44444433  2222 23344556778888988754 9998887653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.70  E-value=3.4e-07  Score=69.16  Aligned_cols=114  Identities=10%  Similarity=-0.056  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHH
Q psy10147         54 MNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIF  132 (179)
Q Consensus        54 ~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~  132 (179)
                      ....+..+...+|.+ ++++|+|+.+.| +.....++..++.+..|+++||++||        +. ....+.........
T Consensus         3 ~~~~~~~~~~~lp~i-~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr--------~~-~~~~~~~~~~~~~~   72 (368)
T TIGR00903         3 SQAIWVTFSPVLSLV-AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR--------WF-LFGSLATFAAAAGR   72 (368)
T ss_pred             hhHHHHHHHhhHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--------HH-HHHHHHHHHHHHHH
Confidence            345677777888885 556899999999 47777888999999999999999854        22 22222222222211


Q ss_pred             HhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        133 FCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       133 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ....++.+..++  +..+..............|..|+ +|+.+.++.+
T Consensus        73 ~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~  120 (368)
T TIGR00903        73 LLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLS  120 (368)
T ss_pred             HHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            122134443333  33332221223334445676664 5999988765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10133 L-fucose transporter; Provisional

Probab=98.67  E-value=1.4e-06  Score=67.26  Aligned_cols=122  Identities=11%  Similarity=0.070  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      +....+..+.............|.+ ++.+|.|+.+.|+ .....++..++.++.|+++||+++|         ..+..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r---------~~l~~g   97 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIITG   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHH
Confidence            3445555555556666677788885 8889999999994 7777889999999999999999864         333344


Q ss_pred             hHHhHHHHHHH---hhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHH
Q psy10147        123 LIGPAVFLIFF---CAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAI  175 (179)
Q Consensus       123 ~~~~~~~~~~~---~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi  175 (179)
                      .....+..+..   ...++.+..++  +..+ ..+.......+.+.+..|++ ++...++
T Consensus        98 ~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~  157 (438)
T PRK10133         98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNL  157 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHH
Confidence            44444444332   22344443333  2222 23334445566666766655 4434444

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.67  E-value=2e-07  Score=54.19  Aligned_cols=60  Identities=18%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .-..+++...+...+..|+|.|+++ .|+|+.+.| +.++......++.+++|+++||.+++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            4455667777888889999999987 799999999 58888889999999999999999875

>KOG1330|consensus

Probab=98.66  E-value=1.6e-07  Score=71.20  Aligned_cols=125  Identities=14%  Similarity=0.078  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      ...+.+++....+=-|++-.-++- .++.+|.++...| +.....+...++.|++|+++||++|+         .++..|
T Consensus        35 l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~---------~v~~vG  104 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK---------RVIAVG  104 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc---------eEEeeH
Confidence            445556666666666666555554 6778999999999 58888899999999999999999865         223333


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      ..+=.+..+...+....|..++   +....-+.+.+..++.+.|.+|+. |+.+.++.++
T Consensus       105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~  164 (493)
T KOG1330|consen  105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF  164 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence            3332333333333444555544   222223345777899999999876 9999999875

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.66  E-value=7.3e-07  Score=67.68  Aligned_cols=122  Identities=9%  Similarity=0.029  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHh
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGL  123 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~  123 (179)
                      +...+...+...........+|.+. +++|+|+.+.+ ......+...++.++.|+++||++||        + .+..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr--------~-~~~~~~   80 (394)
T PRK11652         11 FMLVLLVAVGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR--------P-VILVGM   80 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh--------H-HHHHHH
Confidence            3344444444444444555667655 56899999999 47778888999999999999999864        2 233344


Q ss_pred             HHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHh
Q psy10147        124 IGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAIS  176 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~  176 (179)
                      +...+..+.....++.+..++  +..++ .+...........|..++ +++.+.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (394)
T PRK11652         81 SIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLL  137 (394)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            444444443344444443333  22222 122233344555666654 466665554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.66  E-value=6.9e-07  Score=68.85  Aligned_cols=125  Identities=20%  Similarity=0.209  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      ++...+..+........+..+.|.++++ +|++..+++ +.....++..++.+++|+++||+++|        +. ...+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~~-~~~~  355 (481)
T TIGR00879       286 FLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR--------PL-LLIG  355 (481)
T ss_pred             HHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--------HH-HHHH
Confidence            3444444444444445566777776654 699987777 46677788899999999999999764        22 2223


Q ss_pred             hHHhHHHHHHHh---h--cch-----HHHHHH---HHHHHHHhh-hhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        123 LIGPAVFLIFFC---A--VDN-----LLFAVI---ISMGLSAFN-SAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       123 ~~~~~~~~~~~~---~--~~~-----~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      .+...+....+.   .  .+.     .+..+.   +..+..+.. .+..+....|..|++ +|++.|+.++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  426 (481)
T TIGR00879       356 AAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA  426 (481)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHH
Confidence            333332222222   1  111     121112   222222222 344567778888865 9999888764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.66  E-value=1.5e-06  Score=67.05  Aligned_cols=110  Identities=6%  Similarity=0.031  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHhCCCccc-ch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcc
Q psy10147         60 IIMQWLPTYMSSYLGANSHS-LS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVD  137 (179)
Q Consensus        60 ~~~~~~p~~l~~~~g~~~~~-~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  137 (179)
                      ....+...++.+++|++..+ .| .......+..+..+.+|+++||++.|        + ++..+++.-.+..+++.+.+
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K--------~-vL~l~~l~Wsl~t~L~~fa~  113 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK--------P-VLVLQALSFVCVWLLLLLGT  113 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch--------H-HHHHHHHHHHHHHHHHHHHH
Confidence            34445555788899999999 88 57778888999999999999999753        3 33344444444555555554


Q ss_pred             hHHHHHH--HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        138 NLLFAVI--ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       138 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      +.....+  +..|..-.....+..++..-+|+ +|+.++|+.+.
T Consensus       114 Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~s  157 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRA  157 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            4444333  44443332222677788887875 49999988763

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=98.65  E-value=1.5e-06  Score=69.16  Aligned_cols=115  Identities=15%  Similarity=0.140  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHH
Q psy10147         53 AMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLI  131 (179)
Q Consensus        53 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~  131 (179)
                      ......|++..+.|. +++++|+|..+.+ +..+. .....+.+.+|+++||+++|         ..+.++.+...++.+
T Consensus        38 ~~~g~~y~fsv~s~~-L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R---------~vllig~ll~~iG~l  106 (591)
T PTZ00207         38 ICTSFMYAFNLISGA-MQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPR---------PIFVLSMTVFCLGTL  106 (591)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHH
Confidence            334566777777776 5778999998877 34332 23335566789999999753         344455555555554


Q ss_pred             HHhhc------chHHHHHH--HHHHH-HHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        132 FFCAV------DNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       132 ~~~~~------~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                      .....      .+.+...+  ...+. .+.........+.+.+|++||.+.|+..+
T Consensus       107 l~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~  162 (591)
T PTZ00207        107 LFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKT  162 (591)
T ss_pred             HHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHH
Confidence            44433      23443333  22221 22223345566777889889999988754

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.63  E-value=1.6e-06  Score=66.37  Aligned_cols=124  Identities=13%  Similarity=0.086  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      ++...+..+............+|. +++++|++..++| +.....++..++.+..|++.||+++|         .....+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~-~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r---------~~~~~g   74 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQ-FQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK---------AGILLG   74 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHH
Confidence            344444444444444444466666 5788999999999 47788889999999999999999864         333445


Q ss_pred             hHHhHHHHHHHhh---cchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        123 LIGPAVFLIFFCA---VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+..++....+..   .++.+..+.   +.....+.......+.+.+..|++ ++...++.+
T Consensus        75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (410)
T TIGR00885        75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQ  136 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHH
Confidence            5554444443322   223333333   222223333444556666666644 666665543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.63  E-value=1.5e-06  Score=67.48  Aligned_cols=110  Identities=9%  Similarity=0.059  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcc
Q psy10147         59 YIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVD  137 (179)
Q Consensus        59 ~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  137 (179)
                      +.+..++|.+ ++++|++..+.++ .....+...++.+++|+++||+++|        + .+..+.+...+..+.....+
T Consensus        36 ~~~~~~~~~i-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r--------~-~l~~~~~~~~~~~~~~~~~~  105 (455)
T TIGR00892        36 KAVTVFFKEL-QQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR--------P-VVIAGGLLASLGMILASFSS  105 (455)
T ss_pred             cchhhhHHHH-HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch--------H-HHHhhHHHHHHHHHHHHHhh
Confidence            3455567764 4568999999884 6666677788899999999999865        2 23334444444444444444


Q ss_pred             hHHHHHH---HHHHH-HHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        138 NLLFAVI---ISMGL-SAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       138 ~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                      +.+....   +..++ .+.........+.+.++++|+.+.|+.++
T Consensus       106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~  150 (455)
T TIGR00892       106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMA  150 (455)
T ss_pred             hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4443322   11121 12222334556667778779999888764

>TIGR00898 2A0119 cation transport protein

Probab=98.62  E-value=8.8e-07  Score=69.43  Aligned_cols=134  Identities=10%  Similarity=0.023  Sum_probs=72.4

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      .++++++++|.++...+.......... +.++...+..+.++.+...  ...+..+...++.++++++.||++||     
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~dr~grr-----  385 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTA-FSYYGLVLDLGNLGGNIYL--DLFISGLVELPAKLITLLLIDRLGRR-----  385 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHH-HHHHHHhccccccCCChHH--HHHHHHHHHHHHHHHHHHHHHHhCCH-----
Confidence            467889998887665554433322222 2222222222233444221  13344566778888999999999754     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchH--HHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNL--LFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                          .....+.+..++..+.+...++.  +..+.   ++.+..+......+.+..|.+|.+ |+++.|+.++
T Consensus       386 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~  453 (505)
T TIGR00898       386 ----YTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCST  453 (505)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHH
Confidence                22333444444343333333222  22222   222333344556788889999876 9998887764

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1.7e-07  Score=70.48  Aligned_cols=124  Identities=15%  Similarity=0.165  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      +....+.+.+++..--.+..-.|. ++++.++|..|.| +....++...++..+.|.++||.+.|         .++.++
T Consensus        31 f~~~fiGYa~fYl~RknF~~a~p~-l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr---------~fm~~g  100 (448)
T COG2271          31 FLSIFIGYAAFYLTRKNFNLAMPA-LIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR---------YFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHhHhhccHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc---------eeehHH
Confidence            344445555555555555555565 6677789999999 58888899999999999999998743         456678


Q ss_pred             hHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        123 LIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ++.+++..+.+.+.++.+...+   +-..+-+...+....++..-+|+ +||+..|+=|
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn  159 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWN  159 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEeh
Confidence            8888888877777765554333   22334445566677777777775 4998766544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.61  E-value=1.5e-06  Score=66.23  Aligned_cols=108  Identities=10%  Similarity=-0.026  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcc
Q psy10147         59 YIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVD  137 (179)
Q Consensus        59 ~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  137 (179)
                      ..+...+|. +.+++|.|+.+.+ ......++..++.++.|+++||+++|        +. +..+.+...+........+
T Consensus        30 ~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r--------~~-l~~~~~~~~~~~~~~~~~~   99 (406)
T PRK15402         30 DMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR--------PV-MLAGVAFFILTCLAILLAQ   99 (406)
T ss_pred             hhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--------HH-HHHHHHHHHHHHHHHHHHc
Confidence            334445555 4467899998888 46777788899999999999999764        22 3334444444444344444


Q ss_pred             hHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        138 NLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       138 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                      +.+..+.  +..+ ..+...+..++.+.|..|++ ++.+.++.
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  142 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALM  142 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHH
Confidence            4443333  2222 22233345567777777654 55555543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.61  E-value=2.8e-07  Score=71.62  Aligned_cols=107  Identities=15%  Similarity=0.103  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHh-----
Q psy10147         61 IMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFC-----  134 (179)
Q Consensus        61 ~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~-----  134 (179)
                      +....|. +++++|++..+.| +.....++..++.+++|+++||+++|         ..+..+.+..++..+...     
T Consensus        48 ~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r---------~~l~~~~~~~~~~~~~~~~~~~~  117 (467)
T PRK09556         48 FKAAQND-MISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTK---------QFLPFLLILSAICMLGFGASLGS  117 (467)
T ss_pred             hhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCcc---------chHHHHHHHHHHHHHHHHHHHhc
Confidence            4445676 5567899999999 47778888999999999999999865         222223222222222211     


Q ss_pred             hcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        135 AVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       135 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ..++.+..++  +..+ ..+...+.....+.+.+|+ +||.+.|+.+
T Consensus       118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~  164 (467)
T PRK09556        118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN  164 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence            1234443333  2222 2234455667788888875 4888877654

>PRK12382 putative transporter; Provisional

Probab=98.59  E-value=3.7e-06  Score=63.82  Aligned_cols=114  Identities=13%  Similarity=0.101  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHH
Q psy10147         53 AMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLI  131 (179)
Q Consensus        53 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~  131 (179)
                      +..........+.|.|+++ .|++.  .++ .....++..++.++.|++.||+++|       + .. ..+.....+...
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~-~~-~~~~~~~~~~~~  294 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGV-------K-VA-IVSLLVETVGLL  294 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------e-eh-HHHHHHHHHHHH
Confidence            3345566677888998876 46653  453 4444566778889999999998764       1 11 122223222333


Q ss_pred             HHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccc-hhHHHHHHHhhc
Q psy10147        132 FFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAP-NHAGVTFAISNT  178 (179)
Q Consensus       132 ~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~gi~~~  178 (179)
                      .....++.+..+.  +..+ ..+...+...+...+..| +++|++.|+.++
T Consensus       295 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  345 (392)
T PRK12382        295 LLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAA  345 (392)
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3333344333322  2222 222334445566677776 459999998764

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.58  E-value=2.2e-06  Score=65.24  Aligned_cols=66  Identities=12%  Similarity=0.093  Sum_probs=51.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhH-HHHHHHHHHHHHHHHHHHhc
Q psy10147         41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPY-VLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~-~~~~ig~~~~g~l~dr~~~r  107 (179)
                      |.+.+...+..++...+...+...+|.|+++++|.|+.+.|+ ..... .....+.+.+++ +||+++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r   81 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDR   81 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccch
Confidence            556777777788888888888999999999999999999994 44444 445555666666 9999875

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.55  E-value=2.4e-06  Score=66.45  Aligned_cols=111  Identities=20%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhh-
Q psy10147         58 TYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCA-  135 (179)
Q Consensus        58 ~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~-  135 (179)
                      .+...++.|.++++ .|++...+++ .....+...++.+++|+++||+++|         .....+.+...+....+.. 
T Consensus       287 ~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r---------~~~i~~~~~~~v~~~~l~~~  356 (479)
T PRK10077        287 INVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK---------PLQIIGALGMAIGMFSLGTA  356 (479)
T ss_pred             hhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---------HHHHHhHHHHHHHHHHHHHH
Confidence            44556677887655 7888776664 5556678889999999999999754         2233344333333332211 


Q ss_pred             --cchHH-HHHH-HHHH--HHHh-hhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        136 --VDNLL-FAVI-ISMG--LSAF-NSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       136 --~~~~~-~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                        .+... .... +...  ..+. ..+..+..+.|.+|++ ||++.|+.+.
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~  407 (479)
T PRK10077        357 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA  407 (479)
T ss_pred             HhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHH
Confidence              11111 1111 1111  1111 2345788999999865 9999987653

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.55  E-value=1.8e-06  Score=66.24  Aligned_cols=106  Identities=9%  Similarity=-0.033  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHH
Q psy10147         62 MQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLL  140 (179)
Q Consensus        62 ~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  140 (179)
                      ..-+|. +.+++|.+..+.+ ...+..++..++.+.+|+++||++||         ..+..+.+...+........++.+
T Consensus        36 ~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr---------~~l~~~~~~~~~~~~~~~~a~~~~  105 (413)
T PRK15403         36 QPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR---------PVLITGALIFTLACAATLFTTSMT  105 (413)
T ss_pred             ccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch---------HHHHHHHHHHHHHHHHHHHcCCHH
Confidence            334444 4567899988888 47777888999999999999999865         233334444444444444455554


Q ss_pred             HHHH--HHHHHH-Hhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        141 FAVI--ISMGLS-AFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       141 ~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ..++  +..+.. +......++...|..|++ ++.+.++.+
T Consensus       106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (413)
T PRK15403        106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIIT  146 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4444  333322 222334456777887754 666666543

>PRK09669 putative symporter YagG; Provisional

Probab=98.53  E-value=1.3e-06  Score=67.51  Aligned_cols=74  Identities=5%  Similarity=-0.024  Sum_probs=47.2

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .+++++++|+.++...+..++............+.|.+...+ ++...+ +.....+...++.+++++++||+++|
T Consensus       220 ~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~  294 (444)
T PRK09669        220 KDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRV  294 (444)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            356788899998888777776655555444444444443333 222222 34444566778888999999999764

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.53  E-value=1e-06  Score=66.34  Aligned_cols=109  Identities=15%  Similarity=0.096  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcc
Q psy10147         59 YIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVD  137 (179)
Q Consensus        59 ~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  137 (179)
                      ......+|.+.++ +|+++.+.+ +.....++..++.+++|+++||++||         ..+..+.+...+........+
T Consensus         8 ~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~i~~~~~~~~~   77 (377)
T PRK11102          8 DMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK---------PVILGGTLVFALAAVACALAQ   77 (377)
T ss_pred             HHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh---------HHHHHHHHHHHHHHHHHHHHc
Confidence            3445677887654 899999999 47778888999999999999999754         233445555444444444444


Q ss_pred             hHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        138 NLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       138 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      +.+....  +..++ .+.......+...|..|++ |+.+.++.+
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVT  121 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4443333  22222 2333455677888888755 888887764

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.53  E-value=1.1e-06  Score=66.81  Aligned_cols=69  Identities=14%  Similarity=0.239  Sum_probs=58.9

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         39 ISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .+++.+|......++....+-....+.|.+++++.|+|.++.| +.....+...+.+++.|.++||++.|
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~k   73 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLK   73 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence            3577899999999999898888999999999998899999999 57788888999999999999999865

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.53  E-value=9.8e-07  Score=67.11  Aligned_cols=132  Identities=18%  Similarity=0.154  Sum_probs=68.1

Q ss_pred             HHhhcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---ch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         37 SFISHWSLWSVY-IAHFAMNWSTYIIMQWLPTYMSSYLGANSHS---LS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        37 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~---~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      +.+++++++... ...+........+..++|.|+.+..+.....   .+ +..++.++..++.+..|+++||+++|    
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~----  288 (408)
T PRK09874        213 TSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE----  288 (408)
T ss_pred             HhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----
Confidence            455667665433 3333344445556678888888764432221   23 24445667778888999999999764    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                          +. ...+.....+....+...++.+...+  +..+ ..+...+...+...+..|+ ++|...++.+
T Consensus       289 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  353 (408)
T PRK09874        289 ----KI-LITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ  353 (408)
T ss_pred             ----hh-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence                22 22233333333333333333333322  2222 2223344455555565554 4676666543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.53  E-value=2.5e-06  Score=65.10  Aligned_cols=120  Identities=17%  Similarity=0.148  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHH-----HhcCCchhhhHHHHHH
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNL-----VSHSWTVLTVRRLMTS  120 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~-----~~r~~~~~~~r~~~~~  120 (179)
                      ....++.+.........-+|.|++++ |+|.++.|+ ..+...  .+..+++|+++||+     +||       |++ +.
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~r-------r~~-l~   72 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRR-------RGW-LL   72 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcc-------hhH-HH
Confidence            34556667777777888999999986 999999994 333332  58889999999999     443       333 33


Q ss_pred             HHhHHhHHHHHHHhhc---chHHHHHH--HHH-HHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        121 IGLIGPAVFLIFFCAV---DNLLFAVI--ISM-GLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~---~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+.+..++....+...   .+.+....  +.. .+.....+...+.+.|..|++ |+.+.++..
T Consensus        73 ~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~  136 (402)
T PRK11902         73 LTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKV  136 (402)
T ss_pred             HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHH
Confidence            3444443333333332   22332222  111 222333556788888888765 888777643

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.52  E-value=5.7e-07  Score=70.09  Aligned_cols=127  Identities=13%  Similarity=0.160  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHh
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGL  123 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~  123 (179)
                      +...+..+..+..+..+..|++.|+++.+|+++...| +..+.-+.-++..|+.|+++||...|++.    ||.++..+.
T Consensus         9 ~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Gr----rrp~il~g~   84 (473)
T PRK10429          9 LSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGK----FKPWILIGT   84 (473)
T ss_pred             HhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCC----cchhHhhhh
Confidence            3555566666677777889999999999999999999 57778888999999999999976443332    234444555


Q ss_pred             HHhHHHHHHHhhcc---hH---HHHHH--HHH-HHHHhhhhchhhhhhhcc--chhHHHHHHH
Q psy10147        124 IGPAVFLIFFCAVD---NL---LFAVI--ISM-GLSAFNSAGFLASHADIA--PNHAGVTFAI  175 (179)
Q Consensus       124 ~~~~~~~~~~~~~~---~~---~~~~~--~~~-~~~~~~~~~~~~~~~~~~--~~~~g~~~gi  175 (179)
                      +..++....+...+   ..   ...++  +.. ....+....+.+...|+.  +++|...++.
T Consensus        85 i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~  147 (473)
T PRK10429         85 LANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPY  147 (473)
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHH
Confidence            55554443333222   11   11111  111 222333555777888876  3446665544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.52  E-value=7.2e-06  Score=64.35  Aligned_cols=123  Identities=10%  Similarity=0.070  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHh
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGL  123 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~  123 (179)
                      ....+..+....-...+..-+|.+. +++|.+..+.+ ......++..++.+.+|+++||+++|         ..+..+.
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk---------~~l~~~~   78 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK---------RLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHH
Confidence            3445555555555555666788865 55899988877 46667777888889999999999764         3344455


Q ss_pred             HHhHHHHHHHhhcchHHHHHH--HHHHHH-Hhhhhchhhhhhhcc-c-hhHHHHHHHhh
Q psy10147        124 IGPAVFLIFFCAVDNLLFAVI--ISMGLS-AFNSAGFLASHADIA-P-NHAGVTFAISN  177 (179)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~-~-~~~g~~~gi~~  177 (179)
                      +...+..+.....++.+..++  ...++. +...+.....+.+.. | ++|+.+.|+..
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~  137 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWA  137 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555555555555566655544  333322 222333444454543 4 45888877754

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.51  E-value=1.9e-07  Score=71.67  Aligned_cols=121  Identities=18%  Similarity=0.288  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHH
Q psy10147         52 FAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFL  130 (179)
Q Consensus        52 ~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~  130 (179)
                      +.....+.....+++.|+++.+|+++.++| ...+..+...+..|+.|+++||.++|.+.    ||..+..+.+..++..
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Gr----rr~~i~~~~~~~~i~~   84 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGK----FRPWLLIGAIPFSIVL   84 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCC----cchhHHHhHHHHHHHH
Confidence            344555666778899999999999999999 47778889999999999999997655332    3444444544444444


Q ss_pred             HHHhhcch------HHHHHH--HHHH-HHHhhhhchhhhhhhcc--chhHHHHHHHh
Q psy10147        131 IFFCAVDN------LLFAVI--ISMG-LSAFNSAGFLASHADIA--PNHAGVTFAIS  176 (179)
Q Consensus       131 ~~~~~~~~------~~~~~~--~~~~-~~~~~~~~~~~~~~~~~--~~~~g~~~gi~  176 (179)
                      +.+...++      .+..+.  +... ..+.....+.+...|..  +++|+...++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~  141 (437)
T TIGR00792        85 VLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFR  141 (437)
T ss_pred             HHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHH
Confidence            33333221      111111  1111 12222344566777765  34577766653

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09669 putative symporter YagG; Provisional

Probab=98.51  E-value=3.9e-07  Score=70.40  Aligned_cols=125  Identities=13%  Similarity=0.107  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhH
Q psy10147         46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLI  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~  124 (179)
                      ...+..+..+..+..+..|++.|+++++|+++.++| +..+.-+...+..|+.|+++||.+.|++.    ||..+..+.+
T Consensus        13 ~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Gr----rrp~il~~~~   88 (444)
T PRK09669         13 GYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQ----FRPYLLWFAI   88 (444)
T ss_pred             hhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCC----cchhHHHHHH
Confidence            444555555566667788999999999999999999 47777888999999999999997655433    2344444443


Q ss_pred             HhHHHHHHHhhcch------HHHHHH--HHHH-HHHhhhhchhhhhhhccc--hhHHHHHH
Q psy10147        125 GPAVFLIFFCAVDN------LLFAVI--ISMG-LSAFNSAGFLASHADIAP--NHAGVTFA  174 (179)
Q Consensus       125 ~~~~~~~~~~~~~~------~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~--~~~g~~~g  174 (179)
                      ..++........++      .+...+  +... ........+.+...|+.+  ++|....+
T Consensus        89 ~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~  149 (444)
T PRK09669         89 PFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQS  149 (444)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHH
Confidence            33333332222221      111111  1221 222334456777777763  44665433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.50  E-value=1.9e-06  Score=66.40  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=55.8

Q ss_pred             cccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc---chHHHHHH--HHHH-H
Q psy10147         77 SHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV---DNLLFAVI--ISMG-L  149 (179)
Q Consensus        77 ~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~-~  149 (179)
                      ..+.+ +.....++..++.+++|+++||++||        +. +..+.++..+..+.....   .+.+..++  +..+ .
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  140 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK--------KS-LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIG  140 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH--------HH-HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            67777 47788889999999999999999864        22 333333333333333221   12222222  2222 2


Q ss_pred             HHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        150 SAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      .+...+...+++.|..|+ +|+.+.++.+
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  169 (481)
T TIGR00879       141 VGIASALVPMYLSEIAPKALRGALTSLYQ  169 (481)
T ss_pred             hhHHHhHHHHHHHccCChhhhhhhhhHHH
Confidence            333455567888898875 4888888765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0569|consensus

Probab=98.49  E-value=6.8e-07  Score=69.17  Aligned_cols=137  Identities=12%  Similarity=0.070  Sum_probs=83.0

Q ss_pred             CCCcHHHHhhcHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHH
Q psy10147         31 NGPRWISFISHWSLW-----SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNL  104 (179)
Q Consensus        31 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~  104 (179)
                      .+.++++++++++..     .+.+...-+..+.+...+|...++.+ .|+++.++.+ .....+...+.++++.++.||+
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~  332 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL  332 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456788999876543     23333344455666677777777766 5999988874 7777888999999999999999


Q ss_pred             HhcCCchhhhHHHHHHHHhHHhHHHHHHHh----hcc-h-HHHHH---H-HHHH--HHHhh-hhchhhhhhhccchh-HH
Q psy10147        105 VSHSWTVLTVRRLMTSIGLIGPAVFLIFFC----AVD-N-LLFAV---I-ISMG--LSAFN-SAGFLASHADIAPNH-AG  170 (179)
Q Consensus       105 ~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~~-~-~~~~~---~-~~~~--~~~~~-~~~~~~~~~~~~~~~-~g  170 (179)
                      +||         .+++.+..+..+..+.+.    ... . .|...   . +...  .++.. .+.-|-..+|++|+. |.
T Consensus       333 gRR---------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~  403 (485)
T KOG0569|consen  333 GRR---------PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS  403 (485)
T ss_pred             CCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH
Confidence            875         233333333322222211    111 1 22221   2 2221  22222 445788999999875 88


Q ss_pred             HHHHHhh
Q psy10147        171 VTFAISN  177 (179)
Q Consensus       171 ~~~gi~~  177 (179)
                      ++.++..
T Consensus       404 aa~s~~~  410 (485)
T KOG0569|consen  404 AAQSVAT  410 (485)
T ss_pred             HHHHHHH
Confidence            8776654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.48  E-value=1.5e-06  Score=67.81  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .++.+++|+.++...+..++.....+....+.+.|.+...+ +....+ +.....+...++.++.++++||+++|
T Consensus       223 ~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk  296 (473)
T PRK10429        223 IVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRR  296 (473)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            34456688888888888888777777777777765554433 444444 34444567788889999999999864

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.48  E-value=2.3e-06  Score=66.51  Aligned_cols=122  Identities=15%  Similarity=0.096  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHH----HHhcCCchhhhHHHHHH
Q psy10147         46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADN----LVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr----~~~r~~~~~~~r~~~~~  120 (179)
                      ......+.....+.....+++.|+++ +|.++...+ ......+.+.+..++.|+++||    +|||        +.++.
T Consensus         8 ~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR--------rp~il   78 (477)
T TIGR01301         8 RVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR--------RPFIA   78 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh--------HHHHH
Confidence            44444444455666667788887754 899998888 4677778899999999999995    6654        34444


Q ss_pred             HHhHHhHHHHHHHhhcchH--------------HH-HHH-HHH----HHHHhhhhchhhhhhhccchh---HHHHHHHh
Q psy10147        121 IGLIGPAVFLIFFCAVDNL--------------LF-AVI-ISM----GLSAFNSAGFLASHADIAPNH---AGVTFAIS  176 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~--------------~~-~~~-~~~----~~~~~~~~~~~~~~~~~~~~~---~g~~~gi~  176 (179)
                      .+.+...+.+..+.+.++.              +. ... +++    .......+...+.+.|..|++   ++.+.++.
T Consensus        79 ~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~  157 (477)
T TIGR01301        79 AGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYF  157 (477)
T ss_pred             HHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHH
Confidence            4455554444444443221              11 111 111    233344666788999999743   35666654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.48  E-value=2.2e-06  Score=64.61  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=90.1

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .++|++.+++.+....++.+...=+..+.......|-.+.+|++..+..+ .....+..++|++++|++.||++.|    
T Consensus       243 ~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k----  318 (438)
T COG2270         243 STFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK----  318 (438)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----
Confidence            34666777888899999999999999999999999999999999999884 6677789999999999999999754    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcchHHHH-HH--HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVDNLLFA-VI--ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                         +..  ..+++...+..+........... +.  +.....|...+..-++.....|++ .+.-.|+.+
T Consensus       319 ---~vl--~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglya  383 (438)
T COG2270         319 ---PVL--MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYA  383 (438)
T ss_pred             ---eee--hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhh
Confidence               112  22332222222222222212111 11  222222333555677777877754 666555554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.48  E-value=1.4e-05  Score=61.15  Aligned_cols=134  Identities=16%  Similarity=0.238  Sum_probs=78.7

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      ..+++|+|+++...+..++.....-.+.+|.+.|+++.-|++....+ +..+..+.-.+.....+++..|++.       
T Consensus       200 ~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~-------  272 (400)
T PF03825_consen  200 ALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGI-------  272 (400)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------
Confidence            34799999998888888888788888889999999986447666656 3333333334444445555444432       


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhc-chHHHHH-H--HHHHHHHh----hhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAV-DNLLFAV-I--ISMGLSAF----NSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~----~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                        +.++.++.+..++=...+... ++.+... +  +...+.|.    .......++.+..|++ ++++-|+.+
T Consensus       273 --~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~  343 (400)
T PF03825_consen  273 --KWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYS  343 (400)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence              233444554444333334444 3333222 2  32233333    3444566777777876 788777664

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.46  E-value=2.9e-06  Score=72.71  Aligned_cols=133  Identities=10%  Similarity=0.090  Sum_probs=78.3

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--chh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHS--LSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~--~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      .+++++.++.+++..++...........+..++.+.++.+...  .++ ..+..+...++.+++|+++||++||      
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk------   77 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN------   77 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH------
Confidence            3566777777777777766666555555555666666665433  343 5566777889999999999999864      


Q ss_pred             hHHHHHHHHhHHhHHHHH---HHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        114 VRRLMTSIGLIGPAVFLI---FFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                         ..+..+.++..+..+   ......+.+..++  +..+ ..+...+...+++.|..|++ ++.+.|+.++
T Consensus        78 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  146 (1146)
T PRK08633         78 ---RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEA  146 (1146)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHH
Confidence               222223222211111   1112233333333  2222 33344566778889988754 8888887653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.45  E-value=6e-06  Score=65.60  Aligned_cols=127  Identities=16%  Similarity=0.214  Sum_probs=75.3

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q psy10147         39 ISHWSLWSVYIAHFAMNWSTYII----MQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTV  114 (179)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~l~~~~g~~~~~~gl~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~  114 (179)
                      +++++++......++.....|..    ..-+| +..++.|-++..+.+.....+...++.++.|+++|.+|||       
T Consensus        37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~-~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-------  108 (599)
T PF06609_consen   37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILP-YINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-------  108 (599)
T ss_pred             eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcch-------
Confidence            34566665554444333333322    23334 4445567665444456666788899999999999999854       


Q ss_pred             HHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        115 RRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       115 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                        .+.+.+.++..++.+.-..+++....+.  ...+. .+. .......+.|+.|.+ |+.+.++.
T Consensus       109 --~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~-~~~~~~~isEl~p~k~R~~~~~~~  171 (599)
T PF06609_consen  109 --YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGV-QELAALAISELVPNKWRGLGLAIA  171 (599)
T ss_pred             --HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcccchhhhHhHHH
Confidence              5566677777777776666666555444  11121 222 223455678888755 77766544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.45  E-value=3e-06  Score=65.24  Aligned_cols=134  Identities=13%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      +..+++|+++....+..++...+..........|.+..+|.+.....+ .........++.++...+++|+++|      
T Consensus       229 ~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk------  302 (467)
T COG2211         229 FLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK------  302 (467)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH------
Confidence            346778999988888888888888888888888888888888777764 4444455566688999999999864      


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhcc--hHHHHHH---HHHHHHHhhhhchhhhhhhccc--------hhHHHHHHHhh
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAVD--NLLFAVI---ISMGLSAFNSAGFLASHADIAP--------NHAGVTFAISN  177 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~gi~~  177 (179)
                        +. ...+.++..+....+.+.+  +.+..++   +.....+...+..|++++|...        +..|...|+++
T Consensus       303 --~~-~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t  376 (467)
T COG2211         303 --KL-FLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT  376 (467)
T ss_pred             --HH-HHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence              22 3334444444444443333  3333333   3334445557778999999763        22566666554

>PRK09848 glucuronide transporter; Provisional

Probab=98.43  E-value=2e-06  Score=66.56  Aligned_cols=64  Identities=14%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHS  108 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~  108 (179)
                      +...+..+..+........+++.|+++..|+++.++| +..+..+...+..++.|+++||.++|.
T Consensus        11 ~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~   75 (448)
T PRK09848         11 VGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRW   75 (448)
T ss_pred             HhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCC
Confidence            3455555555666666777888899999999999999 477778889999999999999986653

>PRK11462 putative transporter; Provisional

Probab=98.43  E-value=2.8e-06  Score=66.05  Aligned_cols=127  Identities=11%  Similarity=0.033  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhH
Q psy10147         46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLI  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~  124 (179)
                      ...+..+..+..+..+..|++.|+.+..|+++..+| +..+.-+.-++..|+.|+++||...|.+.    ||.++.++.+
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr----~rp~il~g~i   88 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGK----FRPWVLFGAL   88 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCC----cchhHhHHHH
Confidence            455555556666777788999999999999999999 57777788899999999999987655443    4445555544


Q ss_pred             HhHHHHHHHhhcch------H-HHHHH-H-HHHHHHhhhhchhhhhhhccc--hhHHHHHHHh
Q psy10147        125 GPAVFLIFFCAVDN------L-LFAVI-I-SMGLSAFNSAGFLASHADIAP--NHAGVTFAIS  176 (179)
Q Consensus       125 ~~~~~~~~~~~~~~------~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~g~~~gi~  176 (179)
                      ..++....+...+.      . +..+. + ......+...++.+...|+.+  ++|...+++-
T Consensus        89 ~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r  151 (460)
T PRK11462         89 PFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWR  151 (460)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHH
Confidence            44444443332221      1 11111 2 122233335567888888875  4577776643

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.41  E-value=2.1e-05  Score=60.67  Aligned_cols=118  Identities=10%  Similarity=0.076  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccc---h-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q psy10147         49 IAHFAMNWSTYIIMQWLPTYMSSYLG---ANSHSL---S-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSI  121 (179)
Q Consensus        49 ~~~~~~~~~~~~~~~~~p~~l~~~~g---~~~~~~---g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~  121 (179)
                      +..++...-...+....| ++.++++   .+..+.   + .....+++..+|.+++|+++||++||         ..+..
T Consensus        29 ~~~~~~~~d~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr---------~~l~~   98 (432)
T PRK10406         29 SGNLVEWFDFYVYSFCSL-YFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRK---------KSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH---------HHHHH
Confidence            334444444444333444 5666664   444332   2 23445566679999999999999864         33444


Q ss_pred             HhHHhHHHHHHHhhcchHH--------HHH-H-HHHHH-HHhhhhchhhhhhhccch-hHHHHHHHh
Q psy10147        122 GLIGPAVFLIFFCAVDNLL--------FAV-I-ISMGL-SAFNSAGFLASHADIAPN-HAGVTFAIS  176 (179)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~--------~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~  176 (179)
                      +.+..++........++..        ..+ . +..++ .+...+...+++.|..|+ +||...++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~  165 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQ  165 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHH
Confidence            5555544444443333221        122 2 33332 233466678889998875 488776653

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.41  E-value=1.2e-05  Score=63.19  Aligned_cols=131  Identities=16%  Similarity=0.086  Sum_probs=81.0

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhHHHHHHHHHHHHHHHHHH-----HhcCCch
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNL-----VSHSWTV  111 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl~~~~~~~~~ig~~~~g~l~dr~-----~~r~~~~  111 (179)
                      +..++++.+...+.++......+.....+|.++++. |.|..+.+....... ..++.+++|.++||+     +||    
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~~~~~-~~~~~~l~gpl~Dr~~~~~~Grr----   80 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFSLVGQ-AYVFKFLWSPLMDRYTPPFLGRR----   80 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HHHHHHHHHHHHHcccccCCCCc----
Confidence            345667777888888888888888888999998874 899888884211111 126789999999998     543    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhc---chHHHHHH---HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAV---DNLLFAVI---ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                         |.+ +..+.+...+........   .+.+....   +...+.+.......++..|..|+ +||.+.++.+
T Consensus        81 ---r~~-ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~  149 (491)
T PRK11010         81 ---RGW-LLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISV  149 (491)
T ss_pred             ---hHH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHH
Confidence               333 333444443333322222   23333222   22223333455577888898874 5888777654

>KOG3626|consensus

Probab=98.41  E-value=1.6e-06  Score=69.77  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=62.7

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhh-hHHHHHHHHHHHHHHHHHHH
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAM-PYVLNSLFCIVAGHFADNLV  105 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~-~~~~~~ig~~~~g~l~dr~~  105 (179)
                      ..+++++||.+....+...+......++.+|+|-|+++++|.++..+. ++.. ...+..+|.+++|++..|+.
T Consensus       384 s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  384 SIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence            466788999999999999999999999999999999999999999988 5444 44567789999999988874

>TIGR00896 CynX cyanate transporter

Probab=98.40  E-value=3.6e-06  Score=63.00  Aligned_cols=106  Identities=17%  Similarity=0.187  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchH
Q psy10147         61 IMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNL  139 (179)
Q Consensus        61 ~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  139 (179)
                      ....+|. +++++|+|+.+.+ ....+.++..++.++.|+++||+++|        +. +..+.+...+..... ..++.
T Consensus        19 ~~~~lp~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r--------~~-~~~~~~~~~~~~~~~-~~~~~   87 (355)
T TIGR00896        19 VGPLLPQ-IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE--------RS-VAAGLLLIAAGILIR-SAPGT   87 (355)
T ss_pred             CcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch--------HH-HHHHHHHHHHHHHHH-HhccH
Confidence            3456677 4556899999999 48888899999999999999999865        22 223333333333322 33444


Q ss_pred             HHHHH--HHHHH-HHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147        140 LFAVI--ISMGL-SAFNSAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       140 ~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                      +..++  +..++ .+.........+.+..|++++.+.++.+
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYS  128 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHH
Confidence            43333  22222 2222334455667777777888877764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.40  E-value=2e-05  Score=61.80  Aligned_cols=122  Identities=8%  Similarity=0.088  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----ch-h--hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHH
Q psy10147         46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHS----LS-F--TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLM  118 (179)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~----~g-l--~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~  118 (179)
                      ...+..++...-+..+....| ++.+.++.+..+    .+ +  ....+++..+|.+++|+++||+|||         ..
T Consensus        20 ~~~~g~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr---------~~   89 (490)
T PRK10642         20 AASLGNAMEWFDFGVYGFVAY-ALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQ---------KI   89 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---------HH
Confidence            334444444333333344444 566666543322    12 1  2445577889999999999999864         33


Q ss_pred             HHHHhHHhHHHHHHHhhcchHHH--------HHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        119 TSIGLIGPAVFLIFFCAVDNLLF--------AVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      +..+.++.++..+.....++...        .++  +..+ ..+...+...+++.|.+|+ +||...++.+
T Consensus        90 l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~  160 (490)
T PRK10642         90 LAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLD  160 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence            44555555555555555554321        122  3322 2334456678889999875 4888766543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.39  E-value=1.2e-05  Score=61.53  Aligned_cols=60  Identities=18%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +...++.+...+..+..++|.|+++ .|+|..|.| +.+...+...++.++.|.++||..++
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~   67 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSA   67 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence            4445555566666678889999988 589999999 68888899999999999999998653

>PRK09952 shikimate transporter; Provisional

Probab=98.39  E-value=2.2e-05  Score=60.67  Aligned_cols=123  Identities=11%  Similarity=0.060  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcccchhh-----hhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHH
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYL--GANSHSLSFT-----AMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRL  117 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~--g~~~~~~gl~-----~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~  117 (179)
                      +...+..++...-...+....|.++.+.+  +.++.+..+.     ...+++..+|.++.|+++||++||         .
T Consensus        25 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr---------~   95 (438)
T PRK09952         25 LGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK---------R   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH---------H
Confidence            33444444444444444445566666554  6666532222     233455678888899999999864         3


Q ss_pred             HHHHHhHHhHHHHHHHhhcchHHH--------HHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        118 MTSIGLIGPAVFLIFFCAVDNLLF--------AVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                      .+..+.+...+........++...        .++  ...++ .+...+....++.|..|++ ||...+..
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~  166 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGV  166 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHH
Confidence            344455555555555555554331        111  22222 2233445567888988754 87665544

>TIGR00889 2A0110 nucleoside transporter

Probab=98.38  E-value=1.1e-05  Score=62.10  Aligned_cols=61  Identities=20%  Similarity=0.156  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +.+..++.+..+-....+++.|+++++|++..+.| +.....++..++.+..|+++||+++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~   68 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSA   68 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44555666666666778999999999999999999 58889999999999999999998754

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.38  E-value=6.3e-06  Score=63.38  Aligned_cols=122  Identities=17%  Similarity=0.192  Sum_probs=82.4

Q ss_pred             HhhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         38 FISHW-SLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLG----ANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        38 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g----~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .+++| .++.+...-+.--+.+|++...+-.|++.+++    +|.+++. +........-+..+++||++||+.-+    
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~----   91 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT----   91 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch----
Confidence            34443 46788889999999999999999999999998    9988876 66666666667788999999998543    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcc--hHHHHHH-HHH--HHHHhhhhchhhhhhhccch
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVD--NLLFAVI-ISM--GLSAFNSAGFLASHADIAPN  167 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~  167 (179)
                         |+. +..+.++..++.+.+...+  ......+ +..  ...|..=+...+.+.|..|+
T Consensus        92 ---~~t-I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~  148 (498)
T COG3104          92 ---RRT-IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK  148 (498)
T ss_pred             ---hHH-HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence               333 3456666666666666553  2222222 211  22333345567777777753

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.38  E-value=7.3e-06  Score=70.36  Aligned_cols=136  Identities=14%  Similarity=0.114  Sum_probs=70.8

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCCc-ccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTY----MSSYLGANS-HSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----l~~~~g~~~-~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      .++++++++.++...++...+.+....-++.+    +.+..+.+. ...++ .....+...+.++++|+++||+++|.. 
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~-   84 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL-   84 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH-
Confidence            46666666666665555544433322222222    222222222 22344 455667788999999999999987510 


Q ss_pred             hhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        111 VLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                          .+......++..+..... ...++.+..++  +..+ ..++..+...+.+.+..|++ ++.+.|+.++
T Consensus        85 ----~~~~~~~~~~~~~~~~~~-~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~  151 (1140)
T PRK06814         85 ----AKILKFAEIGIAALAIYG-FHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEA  151 (1140)
T ss_pred             ----HHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHH
Confidence                011111112222211111 12244444433  3333 34455677888899988765 8888887754

>KOG2615|consensus

Probab=98.37  E-value=1.9e-06  Score=64.23  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCc----ccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHH
Q psy10147         56 WSTYIIMQWLPTYMSSYLGANS----HSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFL  130 (179)
Q Consensus        56 ~~~~~~~~~~p~~l~~~~g~~~----~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~  130 (179)
                      ...|.+.+++-.-+++..+.+.    .-+| +...+.+...+.++.+|.++||+||         |..+..++++.++..
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGR---------kpvll~c~~~va~s~  112 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGR---------KPVLLACLIGVALSY  112 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCc---------hHHHHHHHHHHHHHH
Confidence            5567777777777777666554    3356 4666778899999999999999985         466677777777766


Q ss_pred             HHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        131 IFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       131 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      ..+....+....+.  +..|.+-...+...+++.|+.++ +++.+.+.+++
T Consensus       113 ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~  163 (451)
T KOG2615|consen  113 LLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGT  163 (451)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeeh
Confidence            66666655522222  56666666677889999999864 48877766553

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.37  E-value=7.6e-06  Score=63.68  Aligned_cols=95  Identities=20%  Similarity=0.085  Sum_probs=58.4

Q ss_pred             CCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc---------ch---HH
Q psy10147         74 GANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV---------DN---LL  140 (179)
Q Consensus        74 g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---------~~---~~  140 (179)
                      +.+..+.++ .....++..++.+++|+++||++||        +. +..+.++..+..+.....         ++   .+
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr--------~~-~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  121 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR--------DS-LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVP  121 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--------HH-HHHHHHHHHHHHHHHHhhccccccccccchhHHH
Confidence            777778884 7788899999999999999999875        22 223333333222222110         11   11


Q ss_pred             HHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        141 FAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       141 ~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ..++  +..+ ..+...+...+++.|..|++ ||.+.++.+
T Consensus       122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~  162 (479)
T PRK10077        122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQ  162 (479)
T ss_pred             HHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHH
Confidence            2222  2222 33444666788899999755 999888754

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.36  E-value=5.6e-06  Score=62.75  Aligned_cols=61  Identities=7%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      +...+.+++...+......++|.|+++ +|+|..+.| +.....+...++.++.|.++||++|
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~   68 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANH   68 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            345556666666667778899999976 799999999 4777788899999999999999865

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0253|consensus

Probab=98.35  E-value=5.5e-06  Score=61.78  Aligned_cols=135  Identities=10%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             cHHHHhh---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------CCCcccch-h--hhhhHHHH
Q psy10147         34 RWISFIS---HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYL-----------------GANSHSLS-F--TAMPYVLN   90 (179)
Q Consensus        34 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-----------------g~~~~~~g-l--~~~~~~~~   90 (179)
                      ....++.   .++.+..+.+++.....+|+.........|...                 +-.....- +  ..+.....
T Consensus       315 ~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslae  394 (528)
T KOG0253|consen  315 GTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAE  394 (528)
T ss_pred             chHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhh
Confidence            3444443   244566777778888888887766555555432                 11111111 2  45566778


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc--chHHHHHH-HHHHHHHhhhhchhhhhhhccch
Q psy10147         91 SLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV--DNLLFAVI-ISMGLSAFNSAGFLASHADIAPN  167 (179)
Q Consensus        91 ~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  167 (179)
                      ..|.++.+++.||+|||         .-+....+...++.+.+...  ++....+. .+-.+....+...+++..|++|.
T Consensus       395 fPGlLIt~~iverlGRK---------kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  395 FPGLLITGVIVERLGRK---------KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPT  465 (528)
T ss_pred             CCchhHHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccch
Confidence            89999999999999864         44444555555555444433  23333333 44455555677789999999997


Q ss_pred             h-HHHHHHHhh
Q psy10147        168 H-AGVTFAISN  177 (179)
Q Consensus       168 ~-~g~~~gi~~  177 (179)
                      . |+++.|.-.
T Consensus       466 avRatgvGtcS  476 (528)
T KOG0253|consen  466 AVRATGVGTCS  476 (528)
T ss_pred             hhhhcchhhhh
Confidence            6 877776543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.34  E-value=2.9e-05  Score=61.07  Aligned_cols=93  Identities=11%  Similarity=-0.055  Sum_probs=55.7

Q ss_pred             Ccccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcch------HHHHHH--HH
Q psy10147         76 NSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDN------LLFAVI--IS  146 (179)
Q Consensus        76 ~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~  146 (179)
                      +..+.+ +.....++..++.+++|+++||++||         .....+.+...+..+......+      .+..++  +.
T Consensus        54 ~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l  124 (502)
T TIGR00887        54 PSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK---------RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFW  124 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH---------HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHH
Confidence            334445 46667788999999999999999864         2233333333333332222221      222222  22


Q ss_pred             H-HHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        147 M-GLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      . ...+...+....++.|..|++ ||.+.++.+
T Consensus       125 ~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~  157 (502)
T TIGR00887       125 LGVGIGGDYPLSAIITSEFATKKWRGAMMAAVF  157 (502)
T ss_pred             HHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence            2 233344666789999999865 999988765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11462 putative transporter; Provisional

Probab=98.34  E-value=2.3e-05  Score=61.02  Aligned_cols=73  Identities=12%  Similarity=-0.030  Sum_probs=45.6

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .++.+++|+.++......++..............|.+..+|.+. ..+ +.....+.+.++.+++++++||+++|
T Consensus       220 ~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk  293 (460)
T PRK11462        220 DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKV  293 (460)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            35567788887776655555555444444444444444444332 223 34556677888899999999998764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.32  E-value=2.1e-05  Score=62.13  Aligned_cols=131  Identities=17%  Similarity=0.244  Sum_probs=81.1

Q ss_pred             HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHH
Q psy10147         38 FISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRR  116 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~  116 (179)
                      -+|+|.|..+++.....+.+......-++-++.+ ..-|+...++ .....+...+..+++|.++||+.||        +
T Consensus         6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drr--------r   76 (524)
T PF05977_consen    6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRR--------R   76 (524)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch--------H
Confidence            3678888888888888888887777777766655 3556666664 5556667778888999999999765        2


Q ss_pred             HHHHHHhHHhH--HHHHHHhhc--chHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        117 LMTSIGLIGPA--VFLIFFCAV--DNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       117 ~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+...-++...  ..+..+...  .+.+..+.  +..+ +..+..+...+.+.++.|++ ...+.++.+
T Consensus        77 ili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s  145 (524)
T PF05977_consen   77 ILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNS  145 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHH
Confidence            32222221111  111112222  23444333  3333 33455777899999999865 666666554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=98.31  E-value=2.8e-05  Score=60.01  Aligned_cols=124  Identities=13%  Similarity=0.175  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hh-hhh-----HHHHHHHHHHHHHHHHHHHhcCCchhhhHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FT-AMP-----YVLNSLFCIVAGHFADNLVSHSWTVLTVRR  116 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~-~~~-----~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~  116 (179)
                      ....++..++...-...+....|. +.++++.+..+.+ +. ...     .+...++.++.|+++||++||         
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr---------   86 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATA-IAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR---------   86 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH---------
Confidence            344555555555555556667776 5566788877654 32 111     122246788999999999864         


Q ss_pred             HHHHHHhHHhHHHHHHHhhcchHHH--------HHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        117 LMTSIGLIGPAVFLIFFCAVDNLLF--------AVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ..+..+.+...+........++.+.        .++  +..++ .+...+....++.|..|++ ||.+.++.+
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~  159 (434)
T PRK15075         87 KGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQS  159 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHH
Confidence            2333444444444444444444331        111  22222 2223444567889988754 888887643

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.30  E-value=1.3e-07  Score=74.59  Aligned_cols=74  Identities=14%  Similarity=0.192  Sum_probs=0.0

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhh-hHHHHHHHHHHHHHHHHHHHh
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAM-PYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~-~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      ...+++++||.+....+...+......++.+|+|.|++++|+.++.++. +... ...+.++|.+++|++..|++-
T Consensus       296 ~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl  371 (539)
T PF03137_consen  296 KALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKL  371 (539)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecC
Confidence            4566889999999999999999999999999999999999999999988 4433 334678999999999999853

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2504|consensus

Probab=98.29  E-value=7.1e-06  Score=64.43  Aligned_cols=123  Identities=14%  Similarity=0.112  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q psy10147         45 WSVYIAHFAMNWSTYII----MQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMT  119 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~----~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~  119 (179)
                      |...++.+......+++    -.+.+. +++.++.+..++++ ..+......+..++.+.+.||++-|         ...
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~-~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R---------~v~  114 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEE-LMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCR---------TVM  114 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHH-HHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCch---------HHH
Confidence            34444444444444443    334444 45567888887774 6677777888899999999999753         455


Q ss_pred             HHHhHHhHHHHHHHhhcchHHHHHH----HHHHHHHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147        120 SIGLIGPAVFLIFFCAVDNLLFAVI----ISMGLSAFNSAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                      +.|.++..+.++...++.+.|..++    +.....++.+....+.+...++++|+.|.|+..
T Consensus       115 i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~  176 (509)
T KOG2504|consen  115 IAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAV  176 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhh
Confidence            6677777778887778777766555    222233344555566666777888999998865

>PRK10054 putative transporter; Provisional

Probab=98.29  E-value=3.5e-06  Score=64.22  Aligned_cols=132  Identities=11%  Similarity=0.093  Sum_probs=70.2

Q ss_pred             HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Ccccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         36 ISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGA--NSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      ++++++++++...+..++.......+..+.+.|+....+.  +....+. .....+......+..|++.||.++|     
T Consensus       200 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----  274 (395)
T PRK10054        200 SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----  274 (395)
T ss_pred             hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch-----
Confidence            5778899998888888877777776777888888654333  3333342 2233333344456667777776433     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhc-chHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAV-DNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                          .....+.+...+....+... ++.+...+  +..+. .+...+...+.+.+..|++ +|+..+..
T Consensus       275 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~  339 (395)
T PRK10054        275 ----PLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ  339 (395)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH
Confidence                22223333333333333322 33332222  22221 1222344566677777754 66665543

>KOG1330|consensus

Probab=98.27  E-value=8.8e-06  Score=62.09  Aligned_cols=143  Identities=17%  Similarity=0.219  Sum_probs=81.8

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Ccccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGA---NSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSW  109 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~---~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~  109 (179)
                      +++.+.+++.+-...+..........++..|.|.+.+..+.+   +..+.. +..+..+++.+|.+++|.++||+.+...
T Consensus       236 Dl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~  315 (493)
T KOG1330|consen  236 DLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFP  315 (493)
T ss_pred             HHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcc
Confidence            444555667666666666666666677778888877765544   333344 4667778899999999999999876322


Q ss_pred             --chhhhHHHHHHHHhHHhHHHHHHHhhcc--hHHHHHH---HHHHHHHhhhhchhhhhhhccc-hhHHHHHHHh
Q psy10147        110 --TVLTVRRLMTSIGLIGPAVFLIFFCAVD--NLLFAVI---ISMGLSAFNSAGFLASHADIAP-NHAGVTFAIS  176 (179)
Q Consensus       110 --~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~gi~  176 (179)
                        ...+.-......++.+++..+.......  +.+..++   ++........+...-...+..| ++|.++.++.
T Consensus       316 ~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~  390 (493)
T KOG1330|consen  316 NSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALD  390 (493)
T ss_pred             cccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHH
Confidence              2222223333444444444444433322  2222222   2222233334455555666654 5588887764

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.24  E-value=0.00018  Score=54.94  Aligned_cols=134  Identities=10%  Similarity=0.117  Sum_probs=81.6

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Ccccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGA---NSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSW  109 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~---~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~  109 (179)
                      ...+++|+|++|.+.+........++.+-...|.|+...++-   +....| +.....+.-++...+.+++.+|++.|  
T Consensus       212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k--  289 (412)
T PF01306_consen  212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK--  289 (412)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--
Confidence            355788999999988888888788888888899999875432   222344 34444556667777788888888753  


Q ss_pred             chhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--H-HHHHHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        110 TVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--I-SMGLSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                            +.+.+.+. ...+=.......++++....  + -..-...+.....-+..+.+|++ .++...+.
T Consensus       290 ------~~Lllag~-i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  290 ------NLLLLAGV-IMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             ------HHHHHHHH-HHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred             ------hHHHHHHH-HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence                  44443333 33333444555666665444  3 33334445555677777777766 66666553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.23  E-value=1.8e-05  Score=60.03  Aligned_cols=56  Identities=7%  Similarity=0.135  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         51 HFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        51 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +++...+...+..++|.|+++ +|.|..+.| +.....+...++.+++|.++||++|+
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~   69 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQL   69 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence            555556677788899999976 699999999 57778888999999999999999864

>TIGR00898 2A0119 cation transport protein

Probab=98.23  E-value=3e-06  Score=66.44  Aligned_cols=104  Identities=11%  Similarity=0.043  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhCCC---cccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchH
Q psy10147         64 WLPTYMSSYLGAN---SHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNL  139 (179)
Q Consensus        64 ~~p~~l~~~~g~~---~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  139 (179)
                      ..|. ++++++++   ..+.+ ...+..++..++.++.|+++||++||         .....+.+...+..+.....++.
T Consensus       111 ~~~~-i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr---------~~~~~~~~~~~i~~~~~~~~~~~  180 (505)
T TIGR00898       111 FSST-IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRK---------KVLLLSTLVTAVSGVLTAFSPNY  180 (505)
T ss_pred             cccc-EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccch---------HHHHHHHHHHHHHHHHHHHcccH
Confidence            4455 45668888   67777 47788899999999999999999864         23334555555455445555555


Q ss_pred             HHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        140 LFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       140 ~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      +..++  +..+ ..+...+...+.+.|..|++ |+.+.++.+
T Consensus       181 ~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~  222 (505)
T TIGR00898       181 TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQ  222 (505)
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHH
Confidence            54444  2222 22333666788889988765 888777653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.18  E-value=0.00013  Score=58.30  Aligned_cols=137  Identities=9%  Similarity=0.072  Sum_probs=81.1

Q ss_pred             CcHHHHhhc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---cchh-hhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         33 PRWISFISH-WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSH---SLSF-TAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        33 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~---~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .|. +++++ +.+....++.+...+.+|....+.|......++-|+.   +.++ ......+..+|..+.|.+..++++-
T Consensus       301 ~P~-~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~  379 (599)
T PF06609_consen  301 FPH-RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI  379 (599)
T ss_pred             CCH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch
Confidence            444 68887 4566666777777888888889999999988888764   4554 4455566778888888888776421


Q ss_pred             CCchhhhHHHHHHHHhHHhHHHHHHHh--hcchH--HHHHH-HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        108 SWTVLTVRRLMTSIGLIGPAVFLIFFC--AVDNL--LFAVI-ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       108 ~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                             | +.++++.+....++-.+.  ..++.  +..+. ++....+.........++-..|++ .|+++|+..+
T Consensus       380 -------K-w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s  448 (599)
T PF06609_consen  380 -------K-WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGS  448 (599)
T ss_pred             -------h-HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHH
Confidence                   3 333344444433322222  22222  22222 333333333334455555555654 8888887643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.13  E-value=2e-05  Score=60.81  Aligned_cols=126  Identities=14%  Similarity=0.183  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHh
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGL  123 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~  123 (179)
                      .......+..+........|+..|++++.|+++..+| +..+.-+.=++.-|+.|.++||-++|++.    ||.+++.+.
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr----fRP~lL~g~   90 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGR----FRPWLLWGA   90 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccc----ccHHHHHHh
Confidence            3556666666677777889999999999999999999 56677788899999999999987766554    455555665


Q ss_pred             HHhHHHHHHHhhcc------hHHHHHH--HHH-HHHHhhhhchhhhhhhcc--chhHHHHHH
Q psy10147        124 IGPAVFLIFFCAVD------NLLFAVI--ISM-GLSAFNSAGFLASHADIA--PNHAGVTFA  174 (179)
Q Consensus       124 ~~~~~~~~~~~~~~------~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~--~~~~g~~~g  174 (179)
                      +..++...+....+      +.....+  +.. .+......++.+...++.  |++|....+
T Consensus        91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s  152 (467)
T COG2211          91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTS  152 (467)
T ss_pred             HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHH
Confidence            55555444443332      1122222  222 223333555777777776  445655544

>PTZ00207 hypothetical protein; Provisional

Probab=98.07  E-value=0.00015  Score=57.91  Aligned_cols=138  Identities=11%  Similarity=0.064  Sum_probs=88.6

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--ch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHS--LS-FTAMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~--~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      ++++.+++..+|++++..+|....-..+.+.+-.+.+..-|.+...  .. +..+..+.+.+|.+..|+++....+|...
T Consensus       345 t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~  424 (591)
T PTZ00207        345 TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAE  424 (591)
T ss_pred             hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccc
Confidence            7888899999999999999998888888999999887743774433  33 57888899999999999998444444322


Q ss_pred             hhhhHHHHHHHHhHHhHHHHHHHh-hcc--hHHHHHHHHHHHHHhhhhchhhhhhhccchhHHHH
Q psy10147        111 VLTVRRLMTSIGLIGPAVFLIFFC-AVD--NLLFAVIISMGLSAFNSAGFLASHADIAPNHAGVT  172 (179)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  172 (179)
                      ++..|...+.+..+ +.+..+.+. ..+  ......++.....|...+...+...|++.++-|+-
T Consensus       425 ~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~  488 (591)
T PTZ00207        425 DRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKH  488 (591)
T ss_pred             cccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHH
Confidence            22224444444444 222222222 222  12222223334455667777888888887655554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.06  E-value=2.9e-05  Score=60.39  Aligned_cols=98  Identities=15%  Similarity=0.121  Sum_probs=60.8

Q ss_pred             HhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhh--cchHHHHHH--HH
Q psy10147         72 YLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCA--VDNLLFAVI--IS  146 (179)
Q Consensus        72 ~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~  146 (179)
                      +++++..+.| +.....++..++.+.+|+++||+++|         ..+..+.+...+..+....  ..+.+..++  +.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  140 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFK---------WSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVI  140 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcc---------hhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            5788888888 47778889999999999999999865         2222333333333322221  122222222  33


Q ss_pred             HHH-HHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        147 MGL-SAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       147 ~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                      .++ .+...+.....+.+..|+ +|+.+.|+.+.
T Consensus       141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  174 (465)
T TIGR00894       141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS  174 (465)
T ss_pred             HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            332 233355667788888875 59999887653

>TIGR00901 2A0125 AmpG-related permease

Probab=98.04  E-value=6.3e-05  Score=56.32  Aligned_cols=112  Identities=15%  Similarity=0.130  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcc---
Q psy10147         61 IMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVD---  137 (179)
Q Consensus        61 ~~~~~p~~l~~~~g~~~~~~gl~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---  137 (179)
                      +..-+|.++++ +|+|.++.|+.....+...+ .++.|.++||+..|...+   ||.++..+.+..++....+.+..   
T Consensus         7 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Gr---r~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         7 VGNTLPYWLRS-KNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGR---RRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             HHhHHHHHHHH-cCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCc---cHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            44567777765 69999998842222333333 889999999984221000   33333344444443333333321   


Q ss_pred             hHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        138 NLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       138 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      +.+....  +..+ ..+.......+.+.|..|+ +|+.+.|+..
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~  125 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYI  125 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHH
Confidence            2222222  2222 2223345577888898865 4888877654

>KOG2563|consensus

Probab=98.02  E-value=2.2e-05  Score=59.84  Aligned_cols=74  Identities=14%  Similarity=-0.020  Sum_probs=57.9

Q ss_pred             CCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         32 GPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      ..++++.++|+++....+++......+++..+.+-.-+.- .|++...+|+ .....+.++++..+.|.+.||..+
T Consensus       256 ~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~  330 (480)
T KOG2563|consen  256 PKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK  330 (480)
T ss_pred             HHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            3456788999999988888888877777777766643433 4788778885 677778899999999999999743

>KOG0254|consensus

Probab=98.01  E-value=0.00019  Score=56.67  Aligned_cols=87  Identities=14%  Similarity=0.083  Sum_probs=59.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHH-HHHHhhhhchh
Q psy10147         82 FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISM-GLSAFNSAGFL  158 (179)
Q Consensus        82 l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~  158 (179)
                      +.....++..++++++|+++|++|||         ..+..+.+...+..+....+.+.....+  +.. ...|.......
T Consensus        94 ~~s~~~lga~~g~l~~g~l~d~~GRk---------~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~p  164 (513)
T KOG0254|consen   94 LTSILNLGALVGSLLAGRLGDRIGRK---------KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAP  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcch
Confidence            46777889999999999999999864         3344455555555555555555555444  222 23344456678


Q ss_pred             hhhhhccchh-HHHHHHHhh
Q psy10147        159 ASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       159 ~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+..|+.|++ ||...+..+
T Consensus       165 iy~sEiap~~~RG~l~~~~~  184 (513)
T KOG0254|consen  165 VYISEIAPAHIRGTLVSLYQ  184 (513)
T ss_pred             hhHhhcCChhhhHHHHHHHH
Confidence            9999999886 998877654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.00  E-value=5.6e-05  Score=48.26  Aligned_cols=86  Identities=21%  Similarity=0.237  Sum_probs=50.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhh
Q psy10147         84 AMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLAS  160 (179)
Q Consensus        84 ~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~  160 (179)
                      ....++..++.++.|++.||+++|        +. ...+.....+........++.+....  +..+ ..+...+.....
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   75 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRK--------PV-LLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAAL   75 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchh--------HH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            345567788899999999998764        22 23333333333333333344443333  2222 233345567788


Q ss_pred             hhhccchh-HHHHHHHhhc
Q psy10147        161 HADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       161 ~~~~~~~~-~g~~~gi~~~  178 (179)
                      ..|..|++ ++.+.++.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~   94 (141)
T TIGR00880        76 IADIYPPEERGVALGLMSA   94 (141)
T ss_pred             HHHHCChhhhhHHHHHHHH
Confidence            88888765 8888887664

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.98  E-value=0.00045  Score=52.29  Aligned_cols=70  Identities=14%  Similarity=0.116  Sum_probs=52.5

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHH
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFAD  102 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~d  102 (179)
                      ..|+++..+|....+...-+....+++.=-..+-.|--+++|+++.++. +...-..+..+|..+.|++..
T Consensus       199 ~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~  269 (403)
T PF03209_consen  199 EAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS  269 (403)
T ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566777888776666666666565555555777788899999999988 777777788888888888755

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764|consensus

Probab=97.97  E-value=4.3e-05  Score=57.49  Aligned_cols=107  Identities=14%  Similarity=-0.010  Sum_probs=76.1

Q ss_pred             CCCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy10147         31 NGPRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSW  109 (179)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~  109 (179)
                      +..++++++++|.++.....-...+...-..---+|.+..|.+.-+..+.|+ .....+...+++.+.|.++||+...  
T Consensus       259 ~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~--  336 (464)
T KOG3764|consen  259 QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL--  336 (464)
T ss_pred             cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCch--
Confidence            4457899999999998888777777777777778889999988855558886 4445577889999999999999743  


Q ss_pred             chhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH
Q psy10147        110 TVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI  144 (179)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (179)
                           |+.....+++...........+++....++
T Consensus       337 -----~wl~~~~gl~~~G~~~~~iP~~~~~~~L~v  366 (464)
T KOG3764|consen  337 -----RWLLSLGGLATVGVSSGPIPFATSIAQLWV  366 (464)
T ss_pred             -----hHHHHHHHHHHHHHHhchhHhhhhHHHHhh
Confidence                 544445555554444444445554444444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.89  E-value=3.6e-05  Score=62.27  Aligned_cols=51  Identities=14%  Similarity=0.020  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         57 STYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        57 ~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ...++..-.-.-+++.++++..+.| +.....++..++.++.+++.||.+||
T Consensus        47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~   98 (633)
T TIGR00805        47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP   98 (633)
T ss_pred             HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc
Confidence            3334444333446778999999999 57788889999999999999998765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.82  E-value=0.00011  Score=52.47  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHH
Q psy10147         53 AMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLI  131 (179)
Q Consensus        53 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~  131 (179)
                      ......|.+..|.|. +++.+|+|.+|.. +...-.++..+| +..|.+.|+++.         +....++.+....+..
T Consensus        13 ~~~Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp---------~~~l~iG~~~~~~GY~   81 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGP---------WVVLLIGAVLGFVGYG   81 (250)
T ss_pred             HhcCcccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcch---------HHHHHHHHHHHHHHHH
Confidence            445678889999998 6778999999977 455556666664 778999999863         3444455555555554


Q ss_pred             HHhh--cc-----hHHHHHH-HHHHHHHhhh--hchhhhhhhccchhHHHHHHHh
Q psy10147        132 FFCA--VD-----NLLFAVI-ISMGLSAFNS--AGFLASHADIAPNHAGVTFAIS  176 (179)
Q Consensus       132 ~~~~--~~-----~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~gi~  176 (179)
                      ....  .+     ..|...+ ...+..+.+.  .........-+|++||++.|+.
T Consensus        82 ~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgil  136 (250)
T PF06813_consen   82 LLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGIL  136 (250)
T ss_pred             HHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhh
Confidence            4332  11     1222222 3333333222  2233444456799999998875

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.80  E-value=1.2e-05  Score=61.90  Aligned_cols=121  Identities=13%  Similarity=0.140  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHH
Q psy10147         51 HFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVF  129 (179)
Q Consensus        51 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~  129 (179)
                      .+...........+++.|+++..|+++...| .....-+..++..|+.|.++||...|.+.    ||..+..+.+..++.
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Gr----rrp~~l~g~i~~~~~   85 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGR----RRPWILIGAILLALS   85 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccc----cceEeehhhHHHHHH
Confidence            4555666667778999999999999999989 47777788999999999999954433222    334444555555555


Q ss_pred             HHHHhhc-c---hH----HHHHH--H-HHHHHHhhhhchhhhhhhccc--hhHHHHHHH
Q psy10147        130 LIFFCAV-D---NL----LFAVI--I-SMGLSAFNSAGFLASHADIAP--NHAGVTFAI  175 (179)
Q Consensus       130 ~~~~~~~-~---~~----~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~~g~~~gi  175 (179)
                      ...+... +   +.    ....+  + .-....+....+.+...|+.+  ++|....+.
T Consensus        86 ~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~  144 (428)
T PF13347_consen   86 FFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSW  144 (428)
T ss_pred             HHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHH
Confidence            4444433 2   11    11111  1 122223335557888888875  346665554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.74  E-value=0.0024  Score=50.01  Aligned_cols=36  Identities=8%  Similarity=0.224  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCc
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSS-YLGANS   77 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~~~   77 (179)
                      +.++.++++.++.-.+++.+..|...|+.+ .++-++
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~  294 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSV  294 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCC
Confidence            568899999999999999999999998885 566554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0569|consensus

Probab=97.71  E-value=0.00081  Score=52.51  Aligned_cols=108  Identities=11%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhCCCccc--ch-----hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHh-
Q psy10147         63 QWLPTYMSSYLGANSHS--LS-----FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFC-  134 (179)
Q Consensus        63 ~~~p~~l~~~~g~~~~~--~g-----l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~-  134 (179)
                      .|.-.-+.+.+|.+..+  ..     ...+..+++++|+.++|+++||+|||...      ....+..+.++ .+..+. 
T Consensus        39 ~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l------~~~~~l~~~~~-~~~~~s~  111 (485)
T KOG0569|consen   39 SFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNAL------LLSNLLAVLAA-LLMGLSK  111 (485)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH------HHHHHHHHHHH-HHHHHHH
Confidence            34434445556744433  22     23456689999999999999999976210      11111111112 122222 


Q ss_pred             hcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        135 AVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       135 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ..++....++  +..| ..+........+..|..|++ ||....+.+
T Consensus       112 ~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~  158 (485)
T KOG0569|consen  112 SAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQ  158 (485)
T ss_pred             HhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHH
Confidence            2233444444  3333 45556777888999999987 998766543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.67  E-value=0.0007  Score=51.46  Aligned_cols=63  Identities=19%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh---hhhhHHHHHHHHHHH-HHHHHHHHhc
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF---TAMPYVLNSLFCIVA-GHFADNLVSH  107 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl---~~~~~~~~~ig~~~~-g~l~dr~~~r  107 (179)
                      +......++.+..........+|.|+++. |+|..+.|+   ..+|+....+..++. ++.+||.++|
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~-g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r   69 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRED-GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRR   69 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcc
Confidence            34566677788777777889999999875 999999994   356777777777766 4467777654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0255|consensus

Probab=97.67  E-value=0.00015  Score=57.27  Aligned_cols=96  Identities=13%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             HHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHH
Q psy10147         71 SYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISM  147 (179)
Q Consensus        71 ~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  147 (179)
                      +.++.+.....+ ..+..++..+|.++.|.++||+||         |.....+.+...++-+.....++.+...+  ...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GR---------k~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~  181 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGR---------KPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLS  181 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhccc---------HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            334555555554 777888999999999999999875         45556677776666666677777766555  333


Q ss_pred             H-HHHhhhhchhhhhhhccc-hhHHHHHHH
Q psy10147        148 G-LSAFNSAGFLASHADIAP-NHAGVTFAI  175 (179)
Q Consensus       148 ~-~~~~~~~~~~~~~~~~~~-~~~g~~~gi  175 (179)
                      + ..+......+.++.|..+ ++|+.+..+
T Consensus       182 G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~  211 (521)
T KOG0255|consen  182 GFFGSGPLTVGFGLVAEIVSPKQRGLALTL  211 (521)
T ss_pred             HhhccchhHHhHhhheeecCcchhhHHHHH
Confidence            3 333446667888899885 558888776

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.61  E-value=0.0057  Score=48.24  Aligned_cols=138  Identities=14%  Similarity=0.092  Sum_probs=68.8

Q ss_pred             HHhhcHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHhCCCcccch-------hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         37 SFISHWSLWSVYI-A-HFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-------FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        37 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-------l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +++|++.+....+ . .......+....+.+|.|.++..+.+  ..|       +..+..+...+..++.+++.||+++|
T Consensus       262 ~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~--~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r  339 (489)
T PRK10207        262 KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHE--ILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK  339 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccc--ccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC
Confidence            3455555444332 2 22333334444577888887644432  223       22222344557788889999999887


Q ss_pred             CCchhhhHHHHHHHHhHHhHHHHH-------HHhhc---chHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHH
Q psy10147        108 SWTVLTVRRLMTSIGLIGPAVFLI-------FFCAV---DNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTF  173 (179)
Q Consensus       108 ~~~~~~~r~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~  173 (179)
                      +.......+...  +++..++.+.       .....   .+.+..+.  +..+. -++..+...+.+.+..|++ +|.++
T Consensus       340 ~~~~~~~~k~~~--G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~  417 (489)
T PRK10207        340 GKDLSMPMKFTL--GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFIL  417 (489)
T ss_pred             CCCCCcHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHH
Confidence            533322233222  2222222221       11111   12333222  22222 2233555577777778876 99998


Q ss_pred             HHhhc
Q psy10147        174 AISNT  178 (179)
Q Consensus       174 gi~~~  178 (179)
                      |+.++
T Consensus       418 g~~~l  422 (489)
T PRK10207        418 GMWFL  422 (489)
T ss_pred             HHHHH
Confidence            88653

>KOG3764|consensus

Probab=97.61  E-value=0.0003  Score=53.10  Aligned_cols=93  Identities=18%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             Ccccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHH-
Q psy10147         76 NSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSA-  151 (179)
Q Consensus        76 ~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-  151 (179)
                      +..+.| +.+.-.+...+.+++.|.+.||+++|         ..++.|++.+....+.+.+..+.+..++  ...+... 
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~---------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK---------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA  174 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccc---------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence            345577 57777789999999999999999854         6667788887777777777776665555  4444433 


Q ss_pred             hhhhchhhhhhhccchh--HHHHHHHhh
Q psy10147        152 FNSAGFLASHADIAPNH--AGVTFAISN  177 (179)
Q Consensus       152 ~~~~~~~~~~~~~~~~~--~g~~~gi~~  177 (179)
                      +....-.++++|.+|++  ||.+.|+.-
T Consensus       175 ~~~tsglamlAd~f~~d~er~~vmGial  202 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNERGSVMGIAL  202 (464)
T ss_pred             HHHhhhHHHHHHHcccchhhhHHHHHHH
Confidence            33444578899999864  799988753

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.58  E-value=0.0053  Score=47.48  Aligned_cols=72  Identities=11%  Similarity=0.196  Sum_probs=51.9

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      .+|+..++++.++......++ +....++-..+..|+.++ |+++...| +-....+.+..|..+..++.+|+|-
T Consensus       250 ~~w~~Y~~q~vflas~alalL-Y~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGl  322 (432)
T PF06963_consen  250 RGWRTYFRQPVFLASFALALL-YFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGL  322 (432)
T ss_pred             ccHHHHHhCHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            456666666655544443333 444666777888899887 99999888 5666777788888999999888863

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=97.57  E-value=0.00062  Score=53.24  Aligned_cols=60  Identities=15%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLV  105 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~  105 (179)
                      ...+...++..... +.....++.++.+++|+|+.+.+ +.....+...+ .+++|.++||+.
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~   88 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFP   88 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence            34555677777777 77888899999999999999986 55555544444 666999999995

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.57  E-value=0.0018  Score=48.71  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHH--------HHH--HHHHH-HHhhhhch
Q psy10147         89 LNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLF--------AVI--ISMGL-SAFNSAGF  157 (179)
Q Consensus        89 ~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~-~~~~~~~~  157 (179)
                      ...++.++.|+++||+++|         ..+..+.+...+........++...        .++  +..+. .+...+..
T Consensus        47 ~~~i~~~~~G~l~dr~g~r---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  117 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRK---------KTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGA  117 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhH---------HHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhcccccccc
Confidence            3356889999999999864         3333455444444444444433221        111  22222 12234456


Q ss_pred             hhhhhhccch-hHHHHHHHhh
Q psy10147        158 LASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       158 ~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ...+.|..|+ +|+...++.+
T Consensus       118 ~~~~~~~~~~~~r~~~~~~~~  138 (394)
T TIGR00883       118 ALYLAEYAPPGKRGFYGSFQQ  138 (394)
T ss_pred             HHHhhhcCCcccchHHHHHHH
Confidence            6778888865 4877766543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2615|consensus

Probab=97.44  E-value=0.0018  Score=48.84  Aligned_cols=121  Identities=8%  Similarity=-0.030  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHH
Q psy10147         50 AHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAV  128 (179)
Q Consensus        50 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~  128 (179)
                      ..+.+...+-+..++.+.+..+.+|+++.+.| +.....+.+.+....-....||...   .    .+......+.....
T Consensus       269 ~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~---~----~~a~l~~~l~~~vP  341 (451)
T KOG2615|consen  269 HYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKG---N----IKAVLLFSLLLIVP  341 (451)
T ss_pred             HHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccccccc---c----hhhHHHHHHHHHHH
Confidence            33344333333444444544667899999999 5666666555533333333333211   0    12223334433333


Q ss_pred             HHHHHhhcchHHHHHHHHHHHH----Hhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        129 FLIFFCAVDNLLFAVIISMGLS----AFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      .+..+.......... ++..+.    ..........+....|+. ||++.|+..+
T Consensus       342 ~~llls~~~~~~~l~-~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~S  395 (451)
T KOG2615|consen  342 AFLLLSLARTPVVLY-LGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRS  395 (451)
T ss_pred             HHHHHhccccchhhh-HHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHH
Confidence            333333333222111 222222    222333455555566654 9999998653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.42  E-value=0.0016  Score=38.38  Aligned_cols=76  Identities=12%  Similarity=0.141  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHH
Q psy10147         55 NWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFF  133 (179)
Q Consensus        55 ~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~  133 (179)
                      ..+-+.+...+|. ++++.++|..+++ +...-+++..+|.+...++.++..+         +.....+++...+.....
T Consensus         5 GigRFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    5 GIGRFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRP---------RRLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             hhHHHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHH
Confidence            3456677778888 5566799999999 5777888899999988888776322         233344555555555555


Q ss_pred             hhcchHH
Q psy10147        134 CAVDNLL  140 (179)
Q Consensus       134 ~~~~~~~  140 (179)
                      ...++.+
T Consensus        75 a~~~~~~   81 (85)
T PF06779_consen   75 ALTHSFW   81 (85)
T ss_pred             HHHhchH
Confidence            5444443

Note that many members are hypothetical proteins.

>KOG0254|consensus

Probab=97.37  E-value=0.0016  Score=51.55  Aligned_cols=127  Identities=15%  Similarity=0.133  Sum_probs=77.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q psy10147         41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTS  120 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~  120 (179)
                      ++.++...+..+.+..+.....+|.+.++++. |.+........+..+...++..++.++.||++||         .++.
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr---------~lll  363 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-GLKSDTFLASIILGVVNFLGTLVATYLVDRFGRR---------KLLL  363 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHH
Confidence            44456677777777778888889999987764 6654322235566777888888899999999753         4444


Q ss_pred             HHhHHhHHHHHHHhhc----c--------hHHHHHH-HHH--HHHHhh-hhchhhhhhhccchh-HHHHHHHhh
Q psy10147        121 IGLIGPAVFLIFFCAV----D--------NLLFAVI-ISM--GLSAFN-SAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       121 ~~~~~~~~~~~~~~~~----~--------~~~~~~~-~~~--~~~~~~-~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      .+.....+..+.+...    .        ..+..+. ...  ..+... .+..|....|.+|.+ |+.+.++..
T Consensus       364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~  437 (513)
T KOG0254|consen  364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAV  437 (513)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHH
Confidence            5555554444433211    1        1122222 222  122222 444677889999976 777766643

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.0039  Score=46.75  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchH
Q psy10147         61 IMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNL  139 (179)
Q Consensus        61 ~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  139 (179)
                      .-..++. +++++|+|...+| ++.+|.+...+.+++..+++.|++.+       |.  ...+++...+....-... +.
T Consensus        31 vgPLL~~-Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~e-------r~--l~~~Llli~~G~~iR~~~-~~   99 (395)
T COG2807          31 VGPLLDE-IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEE-------RS--LFLALLLIAAGILIRSLG-GL   99 (395)
T ss_pred             hhhhHHH-HHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH-------HH--HHHHHHHHHHHHHHHhcc-cH
Confidence            3344444 5566899999999 69999999999999999999999753       32  233444444444433322 22


Q ss_pred             HHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        140 LFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       140 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                      +..+.   +.....+.........+.+-+|++.+..+|++.+
T Consensus       100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~  141 (395)
T COG2807         100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYST  141 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHH
Confidence            33333   2222233345557777888889988888887653

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.30  E-value=0.047  Score=42.96  Aligned_cols=132  Identities=13%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----ch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHS----LS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLM  118 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~----~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~  118 (179)
                      +....+...+....+.-..+.+|.|.++..+.+...    .+ +..+..+...+..++..++-.|+.+|...+....|  
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k--  351 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK--  351 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH--
Confidence            333444444444444445666788777765554322    23 34444444455444444444455554222222222  


Q ss_pred             HHHHhHHhHHHHHHHhh---------cchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        119 TSIGLIGPAVFLIFFCA---------VDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       119 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      +.++.+..++.+.....         ..+.++.+.  +..+. -.+..+..++...+..|++ ||...|+..
T Consensus       352 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~  423 (475)
T TIGR00924       352 FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWF  423 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            23344444433333221         124444333  22222 2234667788888999876 999988765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.20  E-value=0.015  Score=44.55  Aligned_cols=70  Identities=14%  Similarity=0.096  Sum_probs=45.0

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcccch-hhhhhHHHHHHHHHHHHHHHHHH
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLG--ANSHSLS-FTAMPYVLNSLFCIVAGHFADNL  104 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g--~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~  104 (179)
                      +++..++|.++.-.+-+.+...+++-+.+|......+.-.  -+..--| .-+...+.++++.+..|++..++
T Consensus       240 ~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w  312 (412)
T PF01770_consen  240 FKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNW  312 (412)
T ss_pred             HHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcch
Confidence            3345567877776676777778888888888887776511  1111234 35566677777888888874333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.10  E-value=0.013  Score=46.01  Aligned_cols=77  Identities=14%  Similarity=0.072  Sum_probs=42.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhh-cchHH-HHHH---HHHHHHHhhhhch
Q psy10147         83 TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCA-VDNLL-FAVI---ISMGLSAFNSAGF  157 (179)
Q Consensus        83 ~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~  157 (179)
                      ..+..+..++..|+.|-++|+-++|       ++.+.. ......+....+.+ .++.+ ...+   ++..........+
T Consensus        76 ~sis~l~~all~P~lGa~aD~~~~R-------k~~l~~-~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy  147 (477)
T PF11700_consen   76 NSISGLLQALLAPFLGAIADYGGRR-------KRFLLI-FTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY  147 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccc-------hHHHHH-HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667788889999999986654       333333 33333333333333 23333 2222   4444444556667


Q ss_pred             hhhhhhccch
Q psy10147        158 LASHADIAPN  167 (179)
Q Consensus       158 ~~~~~~~~~~  167 (179)
                      .++..++.++
T Consensus       148 na~LP~la~~  157 (477)
T PF11700_consen  148 NAYLPDLARP  157 (477)
T ss_pred             HHHhHhhcCC
Confidence            8888888753

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00788 fbt folate/biopterin transporter

Probab=96.95  E-value=0.00097  Score=52.20  Aligned_cols=135  Identities=13%  Similarity=0.001  Sum_probs=65.3

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLT  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~  113 (179)
                      .++.+++|.++...+..++.....-+....+-.+.++.+|+++.+.|+ .....++..++..+.+++.+|++.       
T Consensus       245 l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~-------  317 (468)
T TIGR00788       245 LRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPY-------  317 (468)
T ss_pred             HHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCH-------
Confidence            445667787776554444411111111111111344568999999994 555445555555555544443321       


Q ss_pred             hHHHHHHHHhHHhHHHHHHHh-----h-----cchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFC-----A-----VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                       |+. ...+.+...+......     +     .++.+....   +-....+.........+.+..|++ .|+..|+.++
T Consensus       318 -r~~-l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s  394 (468)
T TIGR00788       318 -RLL-FGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLAS  394 (468)
T ss_pred             -HHH-HHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHH
Confidence             333 3334433333221111     0     011111111   222233444556688888888765 8888887764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252|consensus

Probab=96.91  E-value=0.0081  Score=46.55  Aligned_cols=31  Identities=19%  Similarity=0.143  Sum_probs=25.0

Q ss_pred             cccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         77 SHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        77 ~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +...+ ......++.++|.++.|++.||++||
T Consensus        83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            33344 36777889999999999999999976

>KOG3762|consensus

Probab=96.91  E-value=0.00051  Score=53.78  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         52 FAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        52 ~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +++...+..+...+++|..+ +|+++.+.| ++..--++.+++.|++|+++||+.+|
T Consensus        21 ~~~~~~~g~l~pll~vy~kQ-LGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~   76 (618)
T KOG3762|consen   21 LFFGARFGSLFPLLAVYFKQ-LGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKR   76 (618)
T ss_pred             eeeeecccccchHHHHHHHH-cCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence            33344555577788898876 799999999 66555567899999999999999765

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.90  E-value=0.039  Score=42.09  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHh
Q psy10147         63 QWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFC  134 (179)
Q Consensus        63 ~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~  134 (179)
                      ...|. +++.++++..++++ ....+.+..++.+..|++.+|++.|         .-+..++.+.++.+.++.
T Consensus        34 iLip~-l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk---------~gi~lgL~l~avg~~lF~   96 (422)
T COG0738          34 ILIPH-LKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK---------AGIVLGLLLYAVGAALFW   96 (422)
T ss_pred             hhHHH-HHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHh
Confidence            34455 88999999999995 7778888899999999999999854         334456666666666654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.76  E-value=5.4e-06  Score=64.03  Aligned_cols=135  Identities=14%  Similarity=0.178  Sum_probs=67.2

Q ss_pred             CcHHHHhhcHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         33 PRWISFISHWS----LWSVYIAHF-AMNWSTYIIMQWLPTYMSSYLGANSHSLSFTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        33 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ..++++++++.    ........+ ....+.+....+.|.++++ .+.+... ....+..+...++.+++.++.||++||
T Consensus       239 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~GRr  316 (451)
T PF00083_consen  239 ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNSF-LATLILGLVNFLGTLLAIFLIDRFGRR  316 (451)
T ss_pred             eeeeeccccccccccccccccccccccccccccccccccccccc-ccccccc-ccccccccccccccccccccccccccc
Confidence            34666766533    222222222 2233444455666665544 5776651 123334455666677788999999875


Q ss_pred             CCchhhhHHHHHHHHhHHhHHHHHHHh-----hcch----HHHHHH---HHHHHHH-hhhhchhhhhhhccchh-HHHHH
Q psy10147        108 SWTVLTVRRLMTSIGLIGPAVFLIFFC-----AVDN----LLFAVI---ISMGLSA-FNSAGFLASHADIAPNH-AGVTF  173 (179)
Q Consensus       108 ~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~  173 (179)
                               .....+.+..++......     ..++    ....+.   +.....+ ...+..+.+..|.+|.+ |+++.
T Consensus       317 ---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~  387 (451)
T PF00083_consen  317 ---------KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGI  387 (451)
T ss_pred             ---------cccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccc
Confidence                     222233333332222221     1111    111111   2222222 22344678889999976 88887


Q ss_pred             HHhhc
Q psy10147        174 AISNT  178 (179)
Q Consensus       174 gi~~~  178 (179)
                      |+...
T Consensus       388 ~~~~~  392 (451)
T PF00083_consen  388 GLSYA  392 (451)
T ss_pred             ccccc
Confidence            77653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.75  E-value=0.00013  Score=56.39  Aligned_cols=87  Identities=15%  Similarity=0.090  Sum_probs=54.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcc---hHHHHHH--HHHH-HHHhhhh
Q psy10147         82 FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVD---NLLFAVI--ISMG-LSAFNSA  155 (179)
Q Consensus        82 l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~-~~~~~~~  155 (179)
                      +.....++..+|++++|+++||+|||         .....+.+...+..+.....+   +.+...+  +..| ..|....
T Consensus        51 ~~~~~~~g~~~G~~~~g~~~d~~GRk---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~  121 (451)
T PF00083_consen   51 LTSSFFIGAIVGALIFGFLADRYGRK---------PALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYV  121 (451)
T ss_pred             HHHHHHhhhccccccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            36677788999999999999999875         223334444444444444444   4443333  2222 3344466


Q ss_pred             chhhhhhhccchh-HHHHHHHhh
Q psy10147        156 GFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       156 ~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                      ....+..|..|++ ||...++.+
T Consensus       122 ~~~~~~~E~~~~~~R~~~~~~~~  144 (451)
T PF00083_consen  122 VSPIYISEIAPPKHRGFLSSLFQ  144 (451)
T ss_pred             ccccccccccccccccccccccc
Confidence            6788899998754 887765544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252|consensus

Probab=96.51  E-value=0.0043  Score=48.00  Aligned_cols=126  Identities=16%  Similarity=0.185  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-----hh-----hhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-----TA-----MPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-----~~-----~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      +..+..+..++....+.|+...+....+++ .|+.+.+.-+     .+     +.......|..+...++|+++      
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iG------  376 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIG------  376 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhh------
Confidence            456677888899999999999999998876 4776654322     11     111222334555667889987      


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcch----HHHHHH---HHHHHHHhh-hhchhhhhhhccchh-HHHHHHHhh
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVDN----LLFAVI---ISMGLSAFN-SAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                         |++..+.+.++..++.+.+...-+    ....++   +..++..+. ........+|.+|.+ ||+..|+.-
T Consensus       377 ---Rk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsA  448 (538)
T KOG0252|consen  377 ---RKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISA  448 (538)
T ss_pred             ---hHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHH
Confidence               556677787777776665543322    111111   333333333 334678889999987 999988753

>KOG3762|consensus

Probab=96.49  E-value=0.009  Score=47.12  Aligned_cols=131  Identities=11%  Similarity=0.129  Sum_probs=78.4

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhH
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVR  115 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r  115 (179)
                      +++.++....+.+..+....+...+.+++=-++++ .+-.+..-| ..+.-.++-++.-++.+++..|+++-        
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv--------  436 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV--------  436 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc--------
Confidence            45667776666666666656666666666444444 454444455 34444455566666777888887642        


Q ss_pred             HHHHHHHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        116 RLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                       .++..++.....=++.+.+..++|..+.   +-....+..+...-+++....|++ +.++-|+..
T Consensus       437 -~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~  501 (618)
T KOG3762|consen  437 -NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQ  501 (618)
T ss_pred             -ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHH
Confidence             2233344444444455556667776554   333345566777788888888876 888777654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.35  E-value=0.016  Score=44.41  Aligned_cols=99  Identities=14%  Similarity=0.204  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhCC---Ccccch----h-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHH
Q psy10147         61 IMQWLPTYMSSYLGA---NSHSLS----F-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIF  132 (179)
Q Consensus        61 ~~~~~p~~l~~~~g~---~~~~~g----l-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~  132 (179)
                      ..++.|.|+++..+-   ++.+..    + .++..+..++-.|+-|.++|+.+.|       |+++..+.. ...+..+.
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~R-------k~~~~~f~~-i~i~~~~~  105 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPR-------KKFFGFFTA-IGIISTFL  105 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCc-------chHHHHHHH-HHHHHHHH
Confidence            456778888887655   555432    2 3445566677788889999998866       444433333 33333334


Q ss_pred             Hhhcc--hHHHHHH----HHHHHHHhhhhchhhhhhhccch
Q psy10147        133 FCAVD--NLLFAVI----ISMGLSAFNSAGFLASHADIAPN  167 (179)
Q Consensus       133 ~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  167 (179)
                      +.+.+  +.+...+    ++...+......+.+++.+..++
T Consensus       106 L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k  146 (438)
T COG2270         106 LWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTK  146 (438)
T ss_pred             HHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCc
Confidence            44333  2333322    33344445566678888887754

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.27  E-value=0.19  Score=37.89  Aligned_cols=62  Identities=18%  Similarity=0.338  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ++++..........+....+.+  ..|  +.+|++..+.+ +....++.+.+..++.|.++||+|||
T Consensus        37 r~yl~vY~La~~aDWLQGpY~Y--~LY--~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk   99 (354)
T PF05631_consen   37 RKYLLVYLLAMAADWLQGPYLY--ALY--ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK   99 (354)
T ss_pred             HHHHHHHHHHHHHHHhhcchhH--HHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            3444444333444444332222  333  45899999988 67777788888899999999999864

>KOG2533|consensus

Probab=96.22  E-value=0.21  Score=39.65  Aligned_cols=98  Identities=15%  Similarity=0.120  Sum_probs=59.6

Q ss_pred             HHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHH
Q psy10147         71 SYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISM  147 (179)
Q Consensus        71 ~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  147 (179)
                      ++.++...+-+ +..+.+++.+++.+.++.+.||+.-        .+.+...+++......+ -...++.+..+.  +..
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l--------s~~l~~~~~~w~~~~~~-~~~~~s~~~~ialr~ll  144 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL--------SKGLSVSGILWGLFGFL-TAAVHSFPGLIALRFLL  144 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh--------HHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Confidence            44556666666 5778889999999999999999852        33444333333332222 222445544444  444


Q ss_pred             HHHH-hhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        148 GLSA-FNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       148 ~~~~-~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      |++- ...+....++..-+.+ ++|.-.|+.+
T Consensus       145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~  176 (495)
T KOG2533|consen  145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWY  176 (495)
T ss_pred             HHHhcccchHHHHHHHhhcChhhhhhhHHHHH
Confidence            4333 3366667777776754 5888887765

>KOG2532|consensus

Probab=96.12  E-value=0.022  Score=44.62  Aligned_cols=97  Identities=16%  Similarity=0.078  Sum_probs=61.6

Q ss_pred             HhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcc--hHHHHHH--HH
Q psy10147         72 YLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVD--NLLFAVI--IS  146 (179)
Q Consensus        72 ~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~  146 (179)
                      ++++++.+-+ +......+..++.+.+|+++||++.|        +. ...+.+..++..++.+...  +.+..++  +.
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r--------~v-~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~l  137 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR--------RV-FFISGLISALLTLLTPLAASIGFYLLLVLRFL  137 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch--------HH-HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            5777888888 47778889999999999999999854        33 3345555555555544432  2232222  44


Q ss_pred             HHH-HHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        147 MGL-SAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       147 ~~~-~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      .|+ .+..++........-.|. +|+...++..
T Consensus       138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~  170 (466)
T KOG2532|consen  138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILT  170 (466)
T ss_pred             hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHH
Confidence            443 334466666666666664 5887777653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.01  E-value=0.065  Score=43.92  Aligned_cols=51  Identities=20%  Similarity=0.216  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         57 STYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        57 ~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .+|++...+..|+++.+|++..++. ..........+..+++|+++|++..+
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~   53 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK   53 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4678888999999999999988776 45555566677788999999987644

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.96  E-value=0.45  Score=37.79  Aligned_cols=119  Identities=10%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HhCCCcccch-------hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHh
Q psy10147         53 AMNWSTYIIMQWLPTYMSS--YLGANSHSLS-------FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGL  123 (179)
Q Consensus        53 ~~~~~~~~~~~~~p~~l~~--~~g~~~~~~g-------l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~  123 (179)
                      .....+|....-+|+++..  ..+.+....|       +..+..+...+..++.+++-+|+++|...   .++  +.+++
T Consensus       283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~---~~~--~~~G~  357 (500)
T PRK09584        283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPM---PHK--FAIGM  357 (500)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCc---HHH--HHHHH
Confidence            4445666677777777664  2223322222       23333344455556666665666554221   122  33444


Q ss_pred             HHhHHHHHHHhhcc---------hHHHHHH--HHHHHHH-hhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        124 IGPAVFLIFFCAVD---------NLLFAVI--ISMGLSA-FNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       124 ~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                      +..++.+.......         +.++.+.  +..++.. +..+...+.+.+..|++ ||...|+.
T Consensus       358 ~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~  423 (500)
T PRK09584        358 VLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSW  423 (500)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHH
Confidence            44444443332221         1222222  2222222 33556677788888876 99998875

>KOG2816|consensus

Probab=95.59  E-value=0.05  Score=42.65  Aligned_cols=128  Identities=16%  Similarity=0.230  Sum_probs=75.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHH-HHHHHHHhcCCchhhhHHH
Q psy10147         41 HWSLWSVYIAHFAMNWSTYI-IMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAG-HFADNLVSHSWTVLTVRRL  117 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g-~l~dr~~~r~~~~~~~r~~  117 (179)
                      +|..+...+..+.......+ ..-..+.|+...+++++.+.+ +...-.....++..+.. .+...++.+        + 
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~--------~-  309 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK--------R-  309 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------h-
Confidence            34455555544444333332 221457788888999999988 66666667777776766 666666543        2 


Q ss_pred             HHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhcc-chhHHHHHHHhh
Q psy10147        118 MTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIA-PNHAGVTFAISN  177 (179)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~gi~~  177 (179)
                      ....|+..-.+....+.+..+.|....  ....+.....+...+...-.. ++++|.+.++..
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is  372 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIIS  372 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHH
Confidence            455566665555555555555555444  333333444555555555554 455888777654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=95.53  E-value=0.095  Score=40.11  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             HHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHH
Q psy10147         68 YMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLV  105 (179)
Q Consensus        68 ~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~  105 (179)
                      .+..+++.+..-.+ +.++++.... ..+..|+.||+..
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~   42 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHP   42 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCc
Confidence            35566888887777 5777776544 5889999999976

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0255|consensus

Probab=95.52  E-value=0.6  Score=37.13  Aligned_cols=80  Identities=10%  Similarity=0.043  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcch--H---HHHHH-HHHHHHHhhhhchhhhhh
Q psy10147         89 LNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDN--L---LFAVI-ISMGLSAFNSAGFLASHA  162 (179)
Q Consensus        89 ~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~~~~~~~~~~~~~~~~~~  162 (179)
                      .-..+....+...|+++         |+.....+.....+.++...+...  .   ...+. ++.+..+.+....+....
T Consensus       362 ~~~p~~~~~~~~~~~~g---------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFG---------RRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSA  432 (521)
T ss_pred             HHhhHHHHHHHHHHHhC---------cHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455556677778875         445555566665555555544332  1   12222 555556666666789999


Q ss_pred             hccchh-HHHHHHHhh
Q psy10147        163 DIAPNH-AGVTFAISN  177 (179)
Q Consensus       163 ~~~~~~-~g~~~gi~~  177 (179)
                      |..|.. |..+.+..+
T Consensus       433 el~pt~~r~~~~~~~~  448 (521)
T KOG0255|consen  433 ELIPTVVRNTAVGAIS  448 (521)
T ss_pred             hhccHHHHHHHHHHHH
Confidence            999975 777777654

>KOG2816|consensus

Probab=95.42  E-value=0.18  Score=39.59  Aligned_cols=82  Identities=13%  Similarity=0.083  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH-HHHHHHHhhhhchhhhhhhcc
Q psy10147         87 YVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI-ISMGLSAFNSAGFLASHADIA  165 (179)
Q Consensus        87 ~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  165 (179)
                      .+...+.+++.|.++||++||         .......+...+......... .|..+. -..+......+...++++|..
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk---------~~L~~~~~~~~l~~~~~~~~~-~~~~~~~~l~g~~~~~~s~~~a~vadis  141 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK---------VVLLLPLFGTILPALCLLFQG-YWFFLLLGLSGGFSAIFSVGFAYVADIS  141 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh---------hhHHHHHHHHHHhHHHHHHHH-HHHhhhcccccchhhhhhhhhhheeecc
Confidence            456778889999999999865         223233333222222222221 222222 222333344666788888887


Q ss_pred             ch-hHHHHHHHhhc
Q psy10147        166 PN-HAGVTFAISNT  178 (179)
Q Consensus       166 ~~-~~g~~~gi~~~  178 (179)
                      .+ +|....|+.+.
T Consensus       142 ~~~~R~~~~gll~~  155 (463)
T KOG2816|consen  142 SEEERSSSIGLLSG  155 (463)
T ss_pred             chhHHHHHHHHHHH
Confidence            54 48888887653

>KOG0637|consensus

Probab=95.39  E-value=0.043  Score=42.54  Aligned_cols=85  Identities=21%  Similarity=0.151  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHh
Q psy10147         45 WSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGL  123 (179)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~  123 (179)
                      .....+.+..-.++-.=..++|.|+++ .|.+-.-.+ .....-+.+.+..++.|..+||-..|.+.    ||.++..+.
T Consensus        35 i~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR----RRPfI~~~s  109 (498)
T KOG0637|consen   35 ISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR----RRPFILAGS  109 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccccc----ccchHHHhh
Confidence            344444444455566667899999987 588876655 23333355777889999999986555332    344455555


Q ss_pred             HHhHHHHHHHh
Q psy10147        124 IGPAVFLIFFC  134 (179)
Q Consensus       124 ~~~~~~~~~~~  134 (179)
                      ...++.++...
T Consensus       110 ~~i~~~l~Lig  120 (498)
T KOG0637|consen  110 LLIAVSLFLIG  120 (498)
T ss_pred             HHHHHHHhhhh
Confidence            55555554433

>KOG2325|consensus

Probab=95.28  E-value=0.099  Score=41.11  Aligned_cols=114  Identities=15%  Similarity=0.165  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSS-YLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSI  121 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~  121 (179)
                      ++...+..+.....+..+..-.=.|+++ +.+-+....|+ .+...++.++++++.|+.+.|.++-       + ..+..
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~-------k-~Pli~  107 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSV-------K-KPLIV  107 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCc-------c-cCHHH
Confidence            4455555555555544444444456655 12333344564 6667788899999999988776531       1 22333


Q ss_pred             HhHHhHHHHHHH---hhcchHHH--HHH--HHHHHHHhhhhchhhhhhhcc
Q psy10147        122 GLIGPAVFLIFF---CAVDNLLF--AVI--ISMGLSAFNSAGFLASHADIA  165 (179)
Q Consensus       122 ~~~~~~~~~~~~---~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~  165 (179)
                      +.+.+.++.+++   .+.++.+.  .++  +..|+........-.+.++..
T Consensus       108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s  158 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADAS  158 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhcc
Confidence            444444443333   33333222  222  444443334555666666643

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.90  E-value=0.29  Score=38.66  Aligned_cols=67  Identities=12%  Similarity=0.066  Sum_probs=43.2

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHH
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADN  103 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr  103 (179)
                      +..+|+.++.-.+-+.+...+++-+.+|......+.-+-.+.--| .-++..+.+++..+..|++..+
T Consensus       257 ~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~  324 (511)
T TIGR00806       257 TIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIR  324 (511)
T ss_pred             HHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence            445677766555556666777888888888877665331122334 4566667778888888887443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2563|consensus

Probab=94.67  E-value=1  Score=35.24  Aligned_cols=40  Identities=20%  Similarity=0.318  Sum_probs=27.5

Q ss_pred             HHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         66 PTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        66 p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      ..|.++.|| +...+- +..+..+......+.+-|+.||.|-
T Consensus        68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GL  108 (480)
T KOG2563|consen   68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGL  108 (480)
T ss_pred             HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccch
Confidence            345666677 333333 4667777888888889999999874

>KOG0253|consensus

Probab=94.51  E-value=0.22  Score=38.15  Aligned_cols=52  Identities=12%  Similarity=0.102  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         56 WSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        56 ~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .....+...+..-+++..|.+..+..+ ......+..++...+|.++|+++||
T Consensus        91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr  143 (528)
T KOG0253|consen   91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRR  143 (528)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcc
Confidence            333344444555577888877777664 5566678899999999999999976

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.08  E-value=1.1  Score=29.75  Aligned_cols=86  Identities=17%  Similarity=0.226  Sum_probs=45.7

Q ss_pred             ch-h-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHH-HHhhh
Q psy10147         80 LS-F-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGL-SAFNS  154 (179)
Q Consensus        80 ~g-l-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~  154 (179)
                      .| . ..+.+....+.+++.+.+.++++.         |+.+.++.+.-.+....+.+. +.+..+.  ...++ .+...
T Consensus        38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~---------K~sm~lg~~~y~~y~~~~~~~-~~~~l~~~s~l~G~~~a~lW  107 (156)
T PF05978_consen   38 LGYYSLAILYGSFAISCLFAPSIVNKLGP---------KWSMILGSLGYAIYIASFFYP-NSYTLYPASALLGFGAALLW  107 (156)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhHHhh
Confidence            46 4 666777888999999999999874         344555555554444333333 3333333  22222 22223


Q ss_pred             hchhhhhhhccchh-HHHHHHH
Q psy10147        155 AGFLASHADIAPNH-AGVTFAI  175 (179)
Q Consensus       155 ~~~~~~~~~~~~~~-~g~~~gi  175 (179)
                      ...-.++.+...++ ++.-.|+
T Consensus       108 ~aqg~ylt~~s~~~~~~~~~~i  129 (156)
T PF05978_consen  108 TAQGTYLTSYSTEETIGRNTGI  129 (156)
T ss_pred             HhhhHHHHHcCCHHHHhhHHHH
Confidence            33344455555433 5555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3810|consensus

Probab=93.49  E-value=0.14  Score=38.59  Aligned_cols=96  Identities=13%  Similarity=0.135  Sum_probs=52.8

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc----h-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSL----S-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~----g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      +..++|.++.-.+-+.+...++|-..++......+.-   +..+    | .=++....++++.+..|++.-...|.    
T Consensus       229 ~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~---~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~----  301 (433)
T KOG3810|consen  229 ECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVA---PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW----  301 (433)
T ss_pred             HHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhC---CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh----
Confidence            3456777655555566666777778887777666542   2222    2 23344456677777777775443332    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcchHHHH
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVDNLLFA  142 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (179)
                         +..++..+.+..+..++.....++.|..
T Consensus       302 ---g~~ll~~~s~~~agllf~m~~t~~Iw~~  329 (433)
T KOG3810|consen  302 ---GDLLLAVGSAVQAGLLFIMAQTQHIWVC  329 (433)
T ss_pred             ---hHHHHHHHHHHhhhhhhhhhcccceehh
Confidence               3344444444444444445555555543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.15  E-value=2.2  Score=30.22  Aligned_cols=107  Identities=18%  Similarity=0.205  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhCCCc--ccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc
Q psy10147         60 IIMQWLPTYMSSYLGANS--HSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV  136 (179)
Q Consensus        60 ~~~~~~p~~l~~~~g~~~--~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  136 (179)
                      ......|.+..+ .+.+.  ...+ ......+...++.++.|.++||.++|       +.  ...+..............
T Consensus        20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~--~~~~~~~~~~~~~~~~~~   89 (338)
T COG0477          20 LLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR-------KV--LIIGLLLFLLGTLLLALA   89 (338)
T ss_pred             hHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch-------HH--HHHHHHHHHHHHHHHHhC
Confidence            344455555544 34443  2455 35566667777779999999998543       11  222222111111222222


Q ss_pred             ch--HHHHHH--HHHHH-HHhhhhchhhhhhhccch--hHHHHHHHh
Q psy10147        137 DN--LLFAVI--ISMGL-SAFNSAGFLASHADIAPN--HAGVTFAIS  176 (179)
Q Consensus       137 ~~--~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~--~~g~~~gi~  176 (179)
                      .+  .+..+.  ...+. .+...+...+...+..|+  +++...+..
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLV  136 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            22  232222  22222 223455567777887775  566665543

>KOG3098|consensus

Probab=92.58  E-value=4.3  Score=32.09  Aligned_cols=71  Identities=8%  Similarity=0.021  Sum_probs=39.1

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Cccc-chh-hhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGA--NSHS-LSF-TAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--~~~~-~gl-~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      +++++++.+.+....+.............|+.+.-....  +... .++ .....++..++....+.+++|..+.
T Consensus       235 ~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~f  309 (461)
T KOG3098|consen  235 KLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGF  309 (461)
T ss_pred             HHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence            455678777666665555444444455556655433222  2222 122 4445556666677777788777554

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=91.43  E-value=1.9  Score=31.29  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=16.5

Q ss_pred             CCCcHHHHhhcHHHHHHHHHHHH
Q psy10147         31 NGPRWISFISHWSLWSVYIAHFA   53 (179)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~   53 (179)
                      ++..+++++|++..|.-.+.+.+
T Consensus        83 ~~~s~~~~LK~K~tw~w~~~Yg~  105 (267)
T PF07672_consen   83 KKPSYKSILKEKETWKWILIYGI  105 (267)
T ss_pred             ccchHHHHHccchHHHHHHHHHH
Confidence            34668899999988876655544

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=91.21  E-value=2.4  Score=34.01  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=23.4

Q ss_pred             CCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcC
Q psy10147         75 ANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHS  108 (179)
Q Consensus        75 ~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~  108 (179)
                      +++..-| +.....+...+++.++|+.+.|+-+..
T Consensus       290 ~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~  324 (521)
T PF02990_consen  290 LSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSF  324 (521)
T ss_pred             ccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            4666556 555555667777788999988877643

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=90.86  E-value=5  Score=29.45  Aligned_cols=64  Identities=11%  Similarity=0.090  Sum_probs=38.6

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-chhhhhhHHHHHHHHHHHHHHHHHH
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHS-LSFTAMPYVLNSLFCIVAGHFADNL  104 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~-~gl~~~~~~~~~ig~~~~g~l~dr~  104 (179)
                      ..++++.++|+.+............++....|.|.     .|...+. -|+..-|.+...+|.++   +-||+
T Consensus        60 ~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn-----~g~~leaSLGY~InPL~~VllG~lf---lkErl  124 (293)
T COG2962          60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVN-----NGHVLEASLGYFINPLVNVLLGRLF---LKERL  124 (293)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecC-----CCchhHHHhHHHHHHHHHHHHHHHH---HHhhc
Confidence            34667788888777777666666777777777665     1222211 23555566655665553   55666

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.99  E-value=1.5  Score=34.18  Aligned_cols=59  Identities=19%  Similarity=0.254  Sum_probs=35.9

Q ss_pred             HHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHH---hcCCchhhhHHHHHHHHhHHhHHHHH
Q psy10147         65 LPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLV---SHSWTVLTVRRLMTSIGLIGPAVFLI  131 (179)
Q Consensus        65 ~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~---~r~~~~~~~r~~~~~~~~~~~~~~~~  131 (179)
                      ...|+++++|+++.+.. +..+.. .-....++.|.++|-+-   .|       ||..+.++.++......
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~-lPw~~Kp~~g~lsD~~pi~G~r-------r~~Y~~i~~~~~~~~~~   74 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLAS-LPWSIKPLYGLLSDSFPIFGYR-------RKPYMIIGWLLGAVSAL   74 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHh-CchHHhhhHHhhcccccccCCc-------chHHHHHHHHHHHHHHH
Confidence            34568888999998865 322222 23456778999999863   33       45555555555543333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=89.79  E-value=9  Score=30.66  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHh----hc-----chHHHHHH--HHHHHH
Q psy10147         82 FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFC----AV-----DNLLFAVI--ISMGLS  150 (179)
Q Consensus        82 l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~--~~~~~~  150 (179)
                      +..+-.+...+..|+.+++-.|..+|...+....|..  .+++..++....+.    ..     .+.++.+.  +.....
T Consensus       313 ~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa--~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        313 FQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFA--LGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            3444444555566666777677654322222334433  33333333332221    11     12333323  333222


Q ss_pred             Hhh-hhchhhhhhhccchh-HHHHHHHh
Q psy10147        151 AFN-SAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       151 ~~~-~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                      -.+ .+.-.+.+.++.|++ +|...|+.
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w  418 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIY  418 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHH
Confidence            233 555678888999987 88888764

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=89.30  E-value=3.6  Score=31.24  Aligned_cols=64  Identities=14%  Similarity=0.209  Sum_probs=40.1

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHH
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQ-WLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHF  100 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l  100 (179)
                      .++.+++||+++.+.++..++-..+|.+.. |.|. ++. .+ +..--|+ .....+..++|+.+..++
T Consensus       236 a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPa-L~~-~~-~~~P~GlIFssFM~a~MlGS~lf~~l  301 (354)
T PF05631_consen  236 AWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPA-LDP-DD-EELPLGLIFSSFMVAMMLGSSLFSRL  301 (354)
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHheeeeece-ecC-CC-CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            455677899999999999999999999866 7777 441 01 1112343 333444555555555433

>KOG1237|consensus

Probab=85.32  E-value=16  Score=29.84  Aligned_cols=63  Identities=13%  Similarity=0.044  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      .......-.+...+++++...+-.|+.+.+|.+...+. .............+++++++|-+-.
T Consensus        39 ~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~g  102 (571)
T KOG1237|consen   39 APFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLG  102 (571)
T ss_pred             HHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            34455556667788888888999999999999885554 3333334455667889999998854

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=84.60  E-value=17  Score=28.37  Aligned_cols=96  Identities=8%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHH-hCCCcccchh--hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhcch
Q psy10147         62 MQWLPTYMSSY-LGANSHSLSF--TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAVDN  138 (179)
Q Consensus        62 ~~~~p~~l~~~-~g~~~~~~gl--~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  138 (179)
                      ..|+..|+.+. .|++..|..-  .-.-.-...+..+....+.|.++.|         ..++++.+...+...++.+.++
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk---------pviil~~~~~i~t~~lll~~~s   93 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK---------PVIILQALSYIITWLLLLFGTS   93 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHCc
Confidence            45677788876 8998887652  2222234455566788999998643         3344444444444444445554


Q ss_pred             HHHHHH--HHHHHHHhhhhchhhhhhhccc
Q psy10147        139 LLFAVI--ISMGLSAFNSAGFLASHADIAP  166 (179)
Q Consensus       139 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (179)
                      ....-+  +..+.....-..+++++-...+
T Consensus        94 v~~mq~~q~~yg~~~a~evay~sYiys~v~  123 (412)
T PF01770_consen   94 VLAMQLMQFFYGLATAAEVAYYSYIYSVVD  123 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence            443322  5555444444455666665554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=84.12  E-value=0.32  Score=39.10  Aligned_cols=57  Identities=7%  Similarity=-0.016  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHH
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNL  104 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~  104 (179)
                      +.+..+.+ ...+++..-.-+-+++.|+++..++|+ ....-++..+..++..++.+|-
T Consensus         8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~   65 (539)
T PF03137_consen    8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG   65 (539)
T ss_dssp             -----------------------------------------------------------
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            33344444 555555555555688899999999994 6667788888888888887774

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=82.21  E-value=23  Score=27.94  Aligned_cols=63  Identities=21%  Similarity=0.422  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHh
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVS  106 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~  106 (179)
                      .+.+...+++..++--...+-.|.|+.+.+.-+..-.. +...-.+..++..+..|...||..|
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~R   67 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPR   67 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc
Confidence            45677778888888888889999999998765554444 3444455666777777888888654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1479|consensus

Probab=80.88  E-value=25  Score=27.47  Aligned_cols=63  Identities=8%  Similarity=0.030  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         43 SLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .++...+.+......+..+.+-.+.|..+..+.++  +- +.......+.+...+.-.+.-+...|
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~   82 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTR   82 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777778888888888887777666665  33 44555555556666666666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-11

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 9/181 (4%)

Query: 3   SPDVEPVSRRPTVPPPQPPPSAKMVTITNGPRWISFISHWSLWSVYIAHFAMNWSTYIIM 62
           S  + P+       P      A+             + +  LW + IA+  +    Y I+
Sbjct: 213 SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGIL 272

Query: 63  QWLPTYMSSYLGANSHSLSFTAM-PYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSI 121
            W PTY+           S+             ++ G  +D +   +     V      +
Sbjct: 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF----FM 328

Query: 122 GLIGPAVFLIFFCAVDNLLFAVIISMGLSAFN---SAGFLASHADIAPNHA-GVTFAISN 177
            L+  A  + +     N    +I  + +                ++AP  A G     + 
Sbjct: 329 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 388

Query: 178 T 178
            
Sbjct: 389 L 389

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.49
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.31
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.29
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.16
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.11
2xut_A	524	Proton/peptide symporter family protein; transport	99.1
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.1
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.77
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.76
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.73
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.57
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.5
2xut_A	524	Proton/peptide symporter family protein; transport	95.92

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=5.8e-13  Score=100.52  Aligned_cols=136  Identities=5%  Similarity=-0.027  Sum_probs=98.6

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTY-MSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWT  110 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~  110 (179)
                      .++++++++|.++...+..++.....+.+..|+|.| +++.+|+++.+++ +.....++..++.+++|+++||+++|   
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---  325 (438)
T 3o7q_A          249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---  325 (438)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---
T ss_pred             hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---
Confidence            467789999999999999999888899999999999 8888899999999 57777888999999999999998653   


Q ss_pred             hhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHHHHHhhhhchhhhhhhccchhHHHHHHHhh
Q psy10147        111 VLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMGLSAFNSAGFLASHADIAPNHAGVTFAISN  177 (179)
Q Consensus       111 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~  177 (179)
                            .....+.+...+..+.....++.+..+.  +.....+...+..++...|..|++++.+.++.+
T Consensus       326 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (438)
T 3o7q_A          326 ------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV  388 (438)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH
Confidence                  2333444444444444444544433323  222233344566778878888877777666543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.49  E-value=1.2e-12  Score=99.00  Aligned_cols=136  Identities=16%  Similarity=0.153  Sum_probs=96.4

Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHH--HhcCCch
Q psy10147         35 WISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNL--VSHSWTV  111 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~--~~r~~~~  111 (179)
                      ++++++++.++...+..++.....+.+..++|.|+++.+|+++.+++ +.....++..++.+++|+++||+  ++|    
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~----  320 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR----  320 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH----
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----
Confidence            46788899999999999999999999999999999998999999988 57777888999999999999998  543    


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhhcc--hHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCAVD--NLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                          +.......+...+.+..+...+  +.+....  +..++ .+...+..+....|..|++ +|++.|+.++
T Consensus       321 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  389 (451)
T 1pw4_A          321 ----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL  389 (451)
T ss_dssp             ----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence                3333323332323333333332  3333322  22222 2233445678888988865 9999998764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.31  E-value=2e-10  Score=86.59  Aligned_cols=134  Identities=13%  Similarity=0.127  Sum_probs=85.7

Q ss_pred             cHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Ccccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy10147         34 RWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGA---NSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSW  109 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~---~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~  109 (179)
                      +++++++++.++...+..++....++.+..++|.|+++.++.   +....+ +..+..+...++.+++|+++||+++|  
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--  289 (417)
T 2cfq_A          212 LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--  289 (417)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--
T ss_pred             HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--
Confidence            456788999998877776666666667778899999876553   233345 35566677788899999999999754  


Q ss_pred             chhhhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        110 TVLTVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       110 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                            +. ...+.+..++....+...++.+..++   +.....+......+.+..|..|++ +|++.++.
T Consensus       290 ------~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  353 (417)
T 2cfq_A          290 ------NA-LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             ------HH-HHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             ------HH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence                  22 33344444444444444444443333   222222333444678889998876 99988873

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.29  E-value=5.7e-12  Score=93.43  Aligned_cols=137  Identities=11%  Similarity=0.012  Sum_probs=93.8

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      .++++++++|.++...+..++.....+.+..+.|.|+++.+|+++.+++ +.....++..++.++.+++.||.+++    
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~----  265 (375)
T 2gfp_A          190 TSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL----  265 (375)
T ss_dssp             TCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH----
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            4567889999999999999999999999999999999998999999888 47777788888999999999987531    


Q ss_pred             hhhHHHHHHHHh-HHhHHHHHHHhh--cchHHHHHH---HHHHHHHhhhhchhhhhhhccchhHHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGL-IGPAVFLIFFCA--VDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNHAGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gi~~~  178 (179)
                           ....... ............  .++.+....   +.....+...+...+...|..|+++|++.|+.+.
T Consensus       266 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~  333 (375)
T 2gfp_A          266 -----MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGG  333 (375)
T ss_dssp             -----HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHH
Confidence                 1111111 111111111111  113332222   2222334446677888889889779999998764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.16  E-value=6.5e-10  Score=85.14  Aligned_cols=127  Identities=14%  Similarity=0.042  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCcccch-hhhhhHHHHHHHHHHHHHHHHH-HHhcCCchhhh
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSY-----LGANSHSLS-FTAMPYVLNSLFCIVAGHFADN-LVSHSWTVLTV  114 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr-~~~r~~~~~~~  114 (179)
                      +.++...+..++....+|++..++|.|+++.     +|++..+.+ +.....++..++.+++|+++|| ++||       
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-------   85 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-------   85 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence            3467777888888899999999999999998     999999999 5788889999999999999999 7753       


Q ss_pred             HHHHHHHHhHHhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-h--HHHHHHHhh
Q psy10147        115 RRLMTSIGLIGPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-H--AGVTFAISN  177 (179)
Q Consensus       115 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~--~g~~~gi~~  177 (179)
                        ..+..+.+...+..+.....++.+..++  +..+ ..+...+...+.+.|.+|+ +  |+.+.++.+
T Consensus        86 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  152 (491)
T 4aps_A           86 --PAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV  152 (491)
T ss_dssp             --HHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence              3444555555555555555555554444  2222 3344466778889998863 4  666766543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.11  E-value=1.4e-09  Score=82.23  Aligned_cols=126  Identities=10%  Similarity=0.084  Sum_probs=87.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q psy10147         41 HWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMT  119 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~  119 (179)
                      .+.++...+..+......+.+...+|.+.++ + .+..+.+ +.....++..++.+++|+++||+++|         ..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~l   95 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR---------VFL   95 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch---------HHH
Confidence            3455666666677666667777888886655 5 8999999 47888899999999999999999754         344


Q ss_pred             HHHhHHhHHHHHHHhh----cchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        120 SIGLIGPAVFLIFFCA----VDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       120 ~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ..+.+...+..+....    .++.+..++  +..+ ..+...+...+++.|..|+ +|+.+.|+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  161 (451)
T 1pw4_A           96 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN  161 (451)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence            4555555555555544    444444433  3333 3344566778899999875 5999988765

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.10  E-value=5.9e-10  Score=86.10  Aligned_cols=125  Identities=10%  Similarity=-0.051  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcccch-hhhhhHHHHHHHHHHHHHHHHHH-HhcCCchhh
Q psy10147         42 WSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLG------ANSHSLS-FTAMPYVLNSLFCIVAGHFADNL-VSHSWTVLT  113 (179)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g------~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~-~~r~~~~~~  113 (179)
                      +.+|...+..++....+|++..++|.|+++++|      +++.+.+ +.....++..++.+++|+++||+ ++|      
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------   85 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------   85 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence            446677788888888999999999999999999      9999999 47778888999999999999998 754      


Q ss_pred             hHHHHHHHHhHHhHHHHHHHhhcc-hHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHH
Q psy10147        114 VRRLMTSIGLIGPAVFLIFFCAVD-NLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAI  175 (179)
Q Consensus       114 ~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi  175 (179)
                        + .+..+.+...+..+.....+ +.+..++  +..+ ..+...+...+.+.|..|++ |+.+.++
T Consensus        86 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  149 (524)
T 2xut_A           86 --N-TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA  149 (524)
T ss_dssp             --H-HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH
T ss_pred             --H-HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH
Confidence              2 33345555544555455555 5554444  2222 33444667788899988754 7654443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.10  E-value=2.8e-09  Score=80.33  Aligned_cols=125  Identities=12%  Similarity=0.068  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      ++...+..+......+.....+|. +++++|++..+.+ +.....++..++.+++|+++||+++|         ..+..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r---------~~l~~~   97 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIITG   97 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH---------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch---------HHHHHH
Confidence            344455555555555666667777 5667899999999 47788889999999999999999864         334445


Q ss_pred             hHHhHHHHHHH---hhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        123 LIGPAVFLIFF---CAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       123 ~~~~~~~~~~~---~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      .+...+..+..   ...++.+..++  +..+ ..+...+...+++.|..|++ |+.+.++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  160 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT  160 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHH
Confidence            55555555444   44556555544  3332 33444666788999998754 8888877653

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.77  E-value=1.1e-08  Score=77.16  Aligned_cols=70  Identities=13%  Similarity=0.227  Sum_probs=62.3

Q ss_pred             HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         38 FISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      ++++|++|......++....+.....++|.|+++++|+|+.+.| +.....++..++.+++|+++||++||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr   73 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR   73 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            57889999888888888778888889999999998999999999 47777889999999999999999876

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.76  E-value=1.2e-08  Score=75.52  Aligned_cols=122  Identities=7%  Similarity=0.013  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhH
Q psy10147         46 SVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLI  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~  124 (179)
                      ...+..++.......+...+|.+ .+++|.|+.+.+ +.....++..++.++.|+++||++||..         +..+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~---------~~~~~~   73 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV---------ILVGMS   73 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC---------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh---------HHHHHH
Confidence            44555556666666677777875 456899999999 4788888999999999999999987632         122333


Q ss_pred             HhHHHHHHHhhcchHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhh
Q psy10147        125 GPAVFLIFFCAVDNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISN  177 (179)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~  177 (179)
                      ...+........++.+..+.  +..+ ..+...+...+.+.|..|+ +|+.+.++.+
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (375)
T 2gfp_A           74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLN  130 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHH
Confidence            33333333333444444333  2222 2333456677888888864 4777776654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.73  E-value=2.7e-08  Score=76.12  Aligned_cols=131  Identities=11%  Similarity=0.043  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q psy10147         44 LWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~  122 (179)
                      .+...+..++....+.....++|.|+++.++.+..+.+ +.....+...++.++.|+++||++||...    +...+..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~----~~~~~~~~  360 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS----SPTKFAVG  360 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC-------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC----chHHHHHH
Confidence            44455555555566666778899999998898877777 47777788889999999999999876322    11112233


Q ss_pred             hHHhHHHHHHHhhc---------chHHHHHH--HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        123 LIGPAVFLIFFCAV---------DNLLFAVI--ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       123 ~~~~~~~~~~~~~~---------~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      .+...+.+..+...         .+.+....  +..+ ..+...+..++.+.|..|++ +|++.|+.++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  429 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFL  429 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            33333332222211         12232222  2222 22333556788899999876 8888877653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.57  E-value=1.9e-06  Score=65.79  Aligned_cols=122  Identities=20%  Similarity=0.250  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHH
Q psy10147         47 VYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIG  125 (179)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~  125 (179)
                      .....+....+.+.+..|.|.+.++ .+.+..... ...+..+...++.++++++.||++||       +  ....+...
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-------~--~~~~~~~~  351 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-------P--LQIIGALG  351 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-------H--HHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-------c--hhccchHH
Confidence            3334444455566667777776554 577666655 46667788889999999999999865       2  22223323


Q ss_pred             hHHHHHHHh----hcchHHHHHH---HHHHHHHhh-hhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        126 PAVFLIFFC----AVDNLLFAVI---ISMGLSAFN-SAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       126 ~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      ..+.++.+.    .....+..+.   +....++.. .+..+.+..|++|.+ |+++.|+.++
T Consensus       352 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~  413 (491)
T 4gc0_A          352 MAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA  413 (491)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence            222222221    1122222222   222222222 345688999999977 9999887653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.50  E-value=2.6e-06  Score=65.12  Aligned_cols=86  Identities=15%  Similarity=-0.003  Sum_probs=54.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHh------------------hcchHHHHHH
Q psy10147         83 TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFC------------------AVDNLLFAVI  144 (179)
Q Consensus        83 ~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~  144 (179)
                      .....++..+|++++|+++||+|||         ..+..+.+...+..+...                  ..++.+..++
T Consensus        61 ~s~~~~G~~iG~~~~G~laDr~GRk---------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~  131 (491)
T 4gc0_A           61 VASALIGCIIGGALGGYCSNRFGRR---------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI  131 (491)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHTCHH---------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence            5567788999999999999999864         333344444433333322                  1334444444


Q ss_pred             --HHHH-HHHhhhhchhhhhhhccchh-HHHHHHHhh
Q psy10147        145 --ISMG-LSAFNSAGFLASHADIAPNH-AGVTFAISN  177 (179)
Q Consensus       145 --~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~gi~~  177 (179)
                        +..| ..+...+...+++.|..|++ ||...++.+
T Consensus       132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~  168 (491)
T 4gc0_A          132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ  168 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence              3333 34445677889999999865 888777654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=95.92  E-value=0.0017  Score=49.88  Aligned_cols=27  Identities=22%  Similarity=0.127  Sum_probs=20.9

Q ss_pred             hhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        152 FNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       152 ~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                      ...+..++...|..|++ +|++.|+.++
T Consensus       421 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~  448 (524)
T 2xut_A          421 LVSATGLEFAYSQAPKAMKGTIMSFWTL  448 (524)
T ss_dssp             HHHHHHTTTHHHHCCTTCCTTTHHHHGG
T ss_pred             HHHHHHHHHHHHhCcHHHHhHHHHHHHH
Confidence            34566788888988865 9999988875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.49
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.15
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.07
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.65

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.8e-13  Score=101.44  Aligned_cols=140  Identities=16%  Similarity=0.157  Sum_probs=96.5

Q ss_pred             CcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCch
Q psy10147         33 PRWISFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTV  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~  111 (179)
                      ..++++++++.++......++.....+++..|.|.|+++.++++..+++ ...+..+...++.+++|+++||++++.   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---  316 (447)
T d1pw4a_         240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN---  316 (447)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC---
T ss_pred             HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc---
Confidence            3456778899999999999999999999999999999999999999988 477788889999999999999987652   


Q ss_pred             hhhHHHHHHHHhHHhHHHHHHHhh--cchHHHHHH--HHHHH-HHhhhhchhhhhhhccchh-HHHHHHHhhc
Q psy10147        112 LTVRRLMTSIGLIGPAVFLIFFCA--VDNLLFAVI--ISMGL-SAFNSAGFLASHADIAPNH-AGVTFAISNT  178 (179)
Q Consensus       112 ~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~g~~~gi~~~  178 (179)
                         +.................+..  ..+.+...+  +..++ .+......+....|..|++ +|++.|+.++
T Consensus       317 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  386 (447)
T d1pw4a_         317 ---RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL  386 (447)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred             ---cccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence               222222222222222222222  223333333  22222 2233455677888888866 9999988764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=3e-10  Score=82.22  Aligned_cols=70  Identities=13%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy10147         38 FISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSYLGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSH  107 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r  107 (179)
                      .+|||++|...+..++..........++|.|+++++|+|+.+.| +.....+...++.++.|+++||++||
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr   73 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR   73 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            57899999999999999888888888999999999999999999 57888899999999999999999876

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.6e-09  Score=79.72  Aligned_cols=107  Identities=15%  Similarity=0.210  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhCCCcccchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHhHHhHHHHHHHhhc---
Q psy10147         61 IMQWLPTYMSSYLGANSHSLSF-TAMPYVLNSLFCIVAGHFADNLVSHSWTVLTVRRLMTSIGLIGPAVFLIFFCAV---  136 (179)
Q Consensus        61 ~~~~~p~~l~~~~g~~~~~~gl-~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---  136 (179)
                      +....| +++| +|+|..+.|+ .....++..++.+++|+++||++||         ..+..+.++..+..+.....   
T Consensus        44 ~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r---------~~~~~~~~~~~~~~~~~~~~~~~  112 (447)
T d1pw4a_          44 FALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR---------VFLPAGLILAAAVMLFMGFVPWA  112 (447)
T ss_dssp             HHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---------HHHHHHHHHHHHHHhhccccchh
Confidence            344445 4655 7999999994 7888899999999999999999864         33444555544444433322   


Q ss_pred             -chHHHHHH--HHHH-HHHhhhhchhhhhhhccch-hHHHHHHHhhc
Q psy10147        137 -DNLLFAVI--ISMG-LSAFNSAGFLASHADIAPN-HAGVTFAISNT  178 (179)
Q Consensus       137 -~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~gi~~~  178 (179)
                       .+.+..++  +..+ ..+...+.....+.|..|+ +|+.+.|+.+.
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  159 (447)
T d1pw4a_         113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC  159 (447)
T ss_dssp             HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccccccc
Confidence             22222222  2222 3344466678888898875 49999887653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=1.7e-07  Score=67.38  Aligned_cols=131  Identities=13%  Similarity=0.109  Sum_probs=73.2

Q ss_pred             HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCcccch-hhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q psy10147         37 SFISHWSLWSVYIAHFAMNWSTYIIMQWLPTYMSSY---LGANSHSLS-FTAMPYVLNSLFCIVAGHFADNLVSHSWTVL  112 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---~g~~~~~~g-l~~~~~~~~~ig~~~~g~l~dr~~~r~~~~~  112 (179)
                      +.++++..+....................+.+....   .+.+....+ ......++..++..+.+++.||.+++     
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----  289 (417)
T d1pv7a_         215 ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----  289 (417)
T ss_dssp             HHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----
T ss_pred             cccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc-----
Confidence            444445444444444444344444444444433322   222333334 24455566778888888898888643     


Q ss_pred             hhHHHHHHHHhHHhHHHHHHHhhcchHHHHHH---HHHHHHHhhhhchhhhhhhccchh-HHHHHHHh
Q psy10147        113 TVRRLMTSIGLIGPAVFLIFFCAVDNLLFAVI---ISMGLSAFNSAGFLASHADIAPNH-AGVTFAIS  176 (179)
Q Consensus       113 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~gi~  176 (179)
                          .....+.+...+....+...++.+..+.   +.....+...+...+...|..|++ +|++.|+.
T Consensus       290 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (417)
T d1pv7a_         290 ----NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred             ----cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHH
Confidence                3344455555555555555665555444   222233445667788899998865 99988864