Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value
Query 108
pfam03006 207
pfam03006, HlyIII, Haemolysin-III related
2e-05
>gnl|CDD|217315 pfam03006, HlyIII, Haemolysin-III related
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Score = 40.7 bits (96), Expect = 2e-05
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 1 MILQIPRLNIHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISG 60
++L++ L ++ ++++ G++P H + +GG L ++ +
Sbjct: 119 ILLKLFWLKRFRWLRTVLYLLMGWLGIIPIKHLILALGGGG-------LVLLVLGGVLYT 171
Query: 61 LAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLA 96
L + Y RFP G D G SHQ +H FVVL
Sbjct: 172 LGAIFYALRFP-----GPFDIWGHSHQIFHLFVVLG 202
Members of this family are integral membrane proteins. This family includes a protein with hemolytic activity from Bacillus cereus. It has been proposed that YOL002c encodes a Saccharomyces cerevisiae protein that plays a key role in metabolic pathways that regulate lipid and phosphate metabolism. In eukaryotes, members are seven-transmembrane pass molecules found to encode functional receptors with a broad range of apparent ligand specificities, including progestin and adipoQ receptors, and hence have been named PAQR proteins. The mammalian members include progesterone binding proteins. Unlike the case with GPCR receptor proteins, the evolutionary ancestry of the members of this family can be traced back to the Archaea. Length = 207
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
108
KOG0748|consensus 286
99.97
PF03006 222
HlyIII: Haemolysin-III related; InterPro: IPR00425
99.95
TIGR01065 204
hlyIII channel protein, hemolysin III family. This
99.78
PRK15087 219
hemolysin; Provisional
99.71
COG1272 226
Predicted membrane protein, hemolysin III homolog
99.67
KOG4243|consensus 298
97.78
PF05875 262
Ceramidase: Ceramidase; InterPro: IPR008901 This e
88.67
>KOG0748|consensus
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Probab=99.97 E-value=4.5e-31 Score=200.09 Aligned_cols=103 Identities=31% Similarity=0.470 Sum_probs=93.0
Q ss_pred ccccccCCC--chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccc
Q psy10148 3 LQIPRLNIH--PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVD 80 (108)
Q Consensus 3 ~~~p~f~~~--r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD 80 (108)
.+.|||++| |..|+.+|+.+|.++++|++|++....|.+ +.++..+.+...++++|.+|+++|++|+||||+|||||
T Consensus 164 ~l~~~~~~~~~r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~-~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD 242 (286)
T KOG0748|consen 164 SLSDKFRTPKRRPLRAGVFLLLGLSGILPLLHRLILFGGRG-PEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFD 242 (286)
T ss_pred echhhhCCccchhhHHHHHHHHHHhhccHhhhheeeecCCc-cceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccc
Confidence 457888776 799999999999999999999998765543 44567789999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHh
Q psy10148 81 YIGSSHQWWHFFVVLALYYWHNTGIK 106 (108)
Q Consensus 81 ~~g~SHqifHi~v~~g~~~h~~~~~~ 106 (108)
++||||||||++|++|++.|+.+++.
T Consensus 243 ~~G~SHQifHv~vv~~a~~~~~a~~~ 268 (286)
T KOG0748|consen 243 IWGHSHQIFHVLVVLAALFHLEAVLL 268 (286)
T ss_pred eeCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins
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Probab=99.95 E-value=1.9e-28 Score=176.90 Aligned_cols=93 Identities=33% Similarity=0.547 Sum_probs=82.0
Q ss_pred cccCCC--chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCC
Q psy10148 6 PRLNIH--PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIG 83 (108)
Q Consensus 6 p~f~~~--r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g 83 (108)
++++++ |..|+..|+++|+++++|+.|+.....+.+++. . +...+.++++|++|+++|++|+||||.||+||++|
T Consensus 128 ~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~--~-~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g 204 (222)
T PF03006_consen 128 PCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPD--P-LWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWG 204 (222)
T ss_pred hhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccccchH--H-HHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCC
Confidence 344433 899999999999999999999876555555443 4 78899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHH
Q psy10148 84 SSHQWWHFFVVLALYYWH 101 (108)
Q Consensus 84 ~SHqifHi~v~~g~~~h~ 101 (108)
||||+||++|++|+.+||
T Consensus 205 ~sHqi~Hi~v~~~~~~h~ 222 (222)
T PF03006_consen 205 HSHQIWHIFVVLAALCHY 222 (222)
T ss_pred ccHHHHHHHHHHHHHHHC
Confidence 999999999999999996
This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
>TIGR01065 hlyIII channel protein, hemolysin III family
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Probab=99.78 E-value=9.9e-19 Score=126.81 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=69.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCCCchHHHH
Q psy10148 11 HPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWH 90 (108)
Q Consensus 11 ~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g~SHqifH 90 (108)
+|++|+.+|+++||+++.|+-+... . . +...+.+.+.+++.|++|+++|++|+|||+.| ||+||
T Consensus 123 ~r~~r~~~y~~~G~~~v~~~~~~~~-~--~----~~~~~~~l~~gg~~Y~~G~~fY~~~~p~~~~~---------H~iwH 186 (204)
T TIGR01065 123 PRWLSLFLYLIMGWLVVLVIKPLYH-N--L----PGAGFSLLAAGGLLYTVGAIFYALKWPIPFTY---------HAIWH 186 (204)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHH-h--C----CHHHHHHHHHHhHHHHcchHheeecCCCCCCc---------ChHHH
Confidence 4899999999999998777654321 1 1 23457888999999999999999999999744 99999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy10148 91 FFVVLALYYWHNTGIKYI 108 (108)
Q Consensus 91 i~v~~g~~~h~~~~~~~~ 108 (108)
++|++|+.+|+.+++.|+
T Consensus 187 ~fV~~g~~~h~~~i~~~~ 204 (204)
T TIGR01065 187 LFVLGASACHFVAILFYV 204 (204)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 999999999999999875
This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
>PRK15087 hemolysin; Provisional
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Probab=99.71 E-value=7.8e-17 Score=118.24 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhc-CCccccCCccccCCCchHH
Q psy10148 10 IHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITR-FPECFFTGKVDYIGSSHQW 88 (108)
Q Consensus 10 ~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~-~PEr~~PG~FD~~g~SHqi 88 (108)
++|++|+..|++|||++++|+.+..... +...+.+++.+|++|++|++||+.| +|| |||+
T Consensus 136 ~~r~l~~~~Yl~mGw~~v~~~~~l~~~~-------~~~~l~~l~~GG~~Y~~G~~fY~~~~~p~------------~H~I 196 (219)
T PRK15087 136 RFKVLSLVTYLAMGWLSLIVIYQLAIKL-------AIGGVTLLAVGGVVYSLGVIFYVCKRIPY------------NHAI 196 (219)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHhHHHHhhHHHHccCCCCC------------chhH
Confidence 3589999999999999999998876421 2345788899999999999999995 676 7999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy10148 89 WHFFVVLALYYWHNTGIKYI 108 (108)
Q Consensus 89 fHi~v~~g~~~h~~~~~~~~ 108 (108)
||+||++|+.+|+.+++.|+
T Consensus 197 wH~fVl~ga~~H~~ai~~~~ 216 (219)
T PRK15087 197 WHGFVLGGSVCHFLAIYLYV 216 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998774
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
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Probab=99.67 E-value=7.3e-17 Score=118.96 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=72.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCCCchHH
Q psy10148 9 NIHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQW 88 (108)
Q Consensus 9 ~~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g~SHqi 88 (108)
+++|++|+.+|++|||+++.|+-+... .. +...+.++..+|++|++|++||+.|+ |.+++|||+
T Consensus 140 ~~~r~ls~~~yl~mGw~~v~~~~~l~~-~l------~~~~~~~l~~GGv~YsvG~ifY~~~~---------~~~~~~H~i 203 (226)
T COG1272 140 KRFRKLSLVLYLAMGWLGLIVIKPLIA-KL------GLIGLVLLALGGVLYSVGAIFYVLRI---------DRIPYSHAI 203 (226)
T ss_pred CcCceeeehhhHHHHHHHHHHHHHHHH-hC------chHHHHHHHHHhHHheeeeEEEEEee---------ccCCchHHH
Confidence 456999999999999998888766654 22 23568889999999999999999998 567899999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy10148 89 WHFFVVLALYYWHNTGIKYI 108 (108)
Q Consensus 89 fHi~v~~g~~~h~~~~~~~~ 108 (108)
||+||+.|+.+||.+++.|+
T Consensus 204 wH~fVv~ga~~Hf~ai~~~~ 223 (226)
T COG1272 204 WHLFVVGGAACHFIAILFYV 223 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998763
>KOG4243|consensus
Back Show alignment and domain information
Probab=97.78 E-value=5.4e-07 Score=67.12 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccCCccccCCCchHHHHH
Q psy10148 12 PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHF 91 (108)
Q Consensus 12 r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~~~PEr~~PG~FD~~g~SHqifHi 91 (108)
+.+.+.+|+.||.. |-+-.. ......++.++..+|.+|.+|.+|+.+.=- +--.|.|||+
T Consensus 212 K~lEt~~Ylvmg~g---Palvv~-------sm~~~~Gl~~l~~GG~~Y~lGvvFFK~DG~----------ipfAHAIWHL 271 (298)
T KOG4243|consen 212 KVLETFFYLVMGFG---PALVVT-------SMNNTDGLQELATGGLFYCLGVVFFKSDGI----------IPFAHAIWHL 271 (298)
T ss_pred HHHHHHHHHHHhcC---ceEEEE-------EeCCchhHHHHHhCCEEEEEEEEEEecCCc----------eehHHHHHHH
Confidence 56777777777764 221111 011245577788899999999999876521 1126999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy10148 92 FVVLALYYWHNTGIKYI 108 (108)
Q Consensus 92 ~v~~g~~~h~~~~~~~~ 108 (108)
||++|+-+||-|++.|+
T Consensus 272 FV~l~A~cHyYAi~~~L 288 (298)
T KOG4243|consen 272 FVALAAGCHYYAIWKYL 288 (298)
T ss_pred HHHHHcchhHHHHHHHH
Confidence 99999999999999875
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases
Back Show alignment and domain information
Probab=88.67 E-value=8.1 Score=28.67 Aligned_cols=51 Identities=14% Similarity=0.282 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhcCC--ccccCCc------cccCCCchHHHHHHHHHHHHHHHHH
Q psy10148 53 MGMYGISGLAFLIYITRFP--ECFFTGK------VDYIGSSHQWWHFFVVLALYYWHNT 103 (108)
Q Consensus 53 ~~~~~~y~~G~~~Y~~~~P--Er~~PG~------FD~~g~SHqifHi~v~~g~~~h~~~ 103 (108)
..+.+.+.+|.++-..... +.+...+ ..+.-+-|-+||+++.+|++.....
T Consensus 175 ~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~ 233 (262)
T PF05875_consen 175 LFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVF 233 (262)
T ss_pred HHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556666677666665532 1111111 2222347999999999999987754
Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Homologous Structure Domains