Psyllid ID: psy10193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MSTTFRKRPQAPPASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQPAPGRGFGRK
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEccccccccEEEEEEcccccEEEEEEEEEcccccccccEEEEEEEEEEcccccEEEEEEEccccccEEEccccccccccHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccEEEEEEccccccccEEEEEEcccccEEEEcccccccccccccEEEEEEEEEEEcccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
msttfrkrpqappaspipiisyvneppvdgtyKFAFETGNGIAVQEQGalknagqkdleaqtaqgqssytspdgtpiqtqwyadetgyhasgahlptpppipdEIAKAIATLPklveenyapnpqpapgrgfgrk
Flexible Loop (DISEMBL)
msttfrkrpqappaspipiisyVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTaqgqssytspdGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVeenyapnpqpapgrgfgrk
Low Complexity Region (SEG)
MSTTFRKRPQappaspipiisYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQPAPGRGFGRK
Disordered region (IsUnstruct)
*****************PIISYVNEPPVDGTYKFAFETGNGIAV***********************************QWYADETGY***********************************************
Disordered Region (DISOPRED)
******************IISYVNEPPVDGTYKFAFETGNGIAV***************AQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIAT************************
Disordered Region (DISEMBL)
*************ASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALK*********************DGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQP*********
Disordered Region (DISPRO)
*STTFRKRPQAPPASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLV*******************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTTFRKRPQAPPASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQPAPGRGFGRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q7M4F3	135	Endocuticle structural gl	N/A	N/A	0.770	0.770	0.561	1e-28
Q7M4F2	139	Endocuticle structural gl	N/A	N/A	0.777	0.755	0.583	6e-23
O02387	143	Larval cuticle protein LC	N/A	N/A	0.792	0.748	0.431	2e-16
O02388	174	Larval cuticle protein LC	N/A	N/A	0.703	0.545	0.447	3e-16
Q7M4F4	184	Endocuticle structural gl	N/A	N/A	0.770	0.565	0.457	4e-16
Q7M4E9	119	Endocuticle structural gl	N/A	N/A	0.696	0.789	0.418	1e-14
P27779	122	Pupal cuticle protein Edg	no	N/A	0.525	0.581	0.432	3e-12
P16369	192	Pupal cuticle protein OS=	no	N/A	0.511	0.359	0.432	8e-12
Q7M4F1	116	Endocuticle structural gl	N/A	N/A	0.785	0.913	0.481	1e-11
P21799	116	Endocuticle structural gl	N/A	N/A	0.785	0.913	0.481	2e-11

>sp|Q7M4F3|CUD2_SCHGR Endocuticle structural glycoprotein SgAbd-2 OS=Schistocerca gregaria PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 79/105 (75%), Gaps = 1/105 (0%)

Query: 11  APPASP-IPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSY 69
           +PPA   +PI+ Y NE   DG+Y ++++TGNGIA QEQG LKN GQ+DLEA+  QG  SY
Sbjct: 13  SPPARQQVPILQYSNEVNPDGSYAYSYQTGNGIAAQEQGYLKNPGQRDLEAENVQGTFSY 72

Query: 70  TSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPK 114
           T+PDGTPI  ++ ADE G+ A GAHLPTPPPIP+ IA+++  + +
Sbjct: 73  TAPDGTPISLRYVADENGFRAEGAHLPTPPPIPEAIARSLEVIAR 117

Component of the abdominal endocuticle.
Schistocerca gregaria (taxid: 7010)

>sp|Q7M4F2|CUD8_SCHGR Endocuticle structural glycoprotein SgAbd-8 OS=Schistocerca gregaria PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 77/108 (71%), Gaps = 3/108 (2%)

Query: 5   FRKRPQ---APPASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQ 61
           FR +PQ   +   SPIPII Y NE   DG+Y +++ETGNGIA  E GAL+N GQKDLEA 
Sbjct: 2   FRPQPQPSYSGNTSPIPIIRYSNEISPDGSYAWSYETGNGIAADESGALENPGQKDLEAM 61

Query: 62  TAQGQSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAI 109
            AQG  SYT+PDG+PI  ++ AD  G+H  GAHLPTPPPIP  I +A+
Sbjct: 62  RAQGSFSYTAPDGSPISVRYVADRDGFHPEGAHLPTPPPIPPAIQRAL 109

Component of the abdominal endocuticle.

Schistocerca gregaria (taxid: 7010)

>sp|O02387|CU17_BOMMO Larval cuticle protein LCP-17 OS=Bombyx mori GN=LCP17 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 9/116 (7%)

Query: 14  ASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPD 73
           A+P+   SY   P  +G ++F +ETGNGI  Q +GA+KN    +  A   +G   YTSPD
Sbjct: 28  AAPVVKSSYDITP--EGHFQFNYETGNGIYAQAEGAVKNV-NSEYPAIEVKGAYKYTSPD 84

Query: 74  GTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATL------PKLVEENYAPN 123
           G PI   + ADE GY   G+HLPTP PIP+ IA+A+A +      P +VE     N
Sbjct: 85  GQPIDLAYVADENGYQPQGSHLPTPHPIPEAIARALAYIEAHPPSPSVVERKVVAN 140

Component of the cuticle of the larva of Bombyx mori.

Bombyx mori (taxid: 7091)

>sp|O02388|CU22_BOMMO Larval cuticle protein LCP-22 OS=Bombyx mori GN=LCP22 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 20  ISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEA-QTAQGQSSYTSPDGTPIQ 78
           + + NE   DG+Y + +ET NGIA QEQG  +N G         AQG  S+TSP+G PI 
Sbjct: 73  VKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPIS 132

Query: 79  TQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPK 114
             + ADE GY  +G  +PT PP+P++IA+A+A + K
Sbjct: 133 VNYVADENGYQPTGNAIPTSPPVPEQIARALAYIAK 168

Component of the cuticle of the larva of Bombyx mori.

Bombyx mori (taxid: 7091)

>sp|Q7M4F4|CUD1_SCHGR Endocuticle structural glycoprotein SgAbd-1 OS=Schistocerca gregaria PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 62/105 (59%), Gaps = 1/105 (0%)

Query: 6   RKRPQAPPASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQG 65
           R  PQA       II    +   DG+Y++ +ET NGIA  E GALK A   + +   AQG
Sbjct: 64  RTIPQASSDGHWIIIKQAKDQANDGSYRWNYETENGIAADETGALK-AIAPNEDGTAAQG 122

Query: 66  QSSYTSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIA 110
             SYT+PDGTPI+  + ADE G+ A G H P  PPIP+ I +A+A
Sbjct: 123 FYSYTAPDGTPIRVTYTADENGFQAQGDHFPVGPPIPEAIQRALA 167

Component of the abdominal endocuticle.

Schistocerca gregaria (taxid: 7010)

>sp|Q7M4E9|CUD3_SCHGR Endocuticle structural glycoprotein SgAbd-3 OS=Schistocerca gregaria PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 4/98 (4%)

Query: 19  IISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAG----QKDLEAQTAQGQSSYTSPDG 74
           I+S  N+   DG+Y+++FET +G    ++GALK         D   +  +G  SYT   G
Sbjct: 14  IVSATNDVNFDGSYRYSFETSDGQRASQEGALKQVSAPGPDGDTLGEAVRGDFSYTDDAG 73

Query: 75  TPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATL 112
                Q+ ADE GY   GAHLPTPPPIP+ I KA+A +
Sbjct: 74  NQFAIQYTADENGYVPQGAHLPTPPPIPEAIQKALAYI 111

Component of the abdominal endocuticle.

Schistocerca gregaria (taxid: 7010)

>sp|P27779|CUP7_DROME Pupal cuticle protein Edg-78E OS=Drosophila melanogaster GN=Edg78E PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 10/81 (12%)

Query: 29  DGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88
           +G Y++A+ET NGI +QE G           A  A+G  +Y SP+G  I   + ADE GY
Sbjct: 36  EGNYQYAYETSNGIQIQEAG----------NANGARGAVAYVSPEGEHISLTYTADEEGY 85

Query: 89  HASGAHLPTPPPIPDEIAKAI 109
           H  G HLPTPPP+P  + +A+
Sbjct: 86  HPVGDHLPTPPPVPAYVLRAL 106

Component of the cuticle of the pupa of fruit fly.

Drosophila melanogaster (taxid: 7227)

>sp|P16369|CUPP_DROPS Pupal cuticle protein OS=Drosophila pseudoobscura pseudoobscura GN=Pcp PE=2 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 12/81 (14%)

Query: 29  DGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88
           DG Y++A+ET NGI+  ++G         L   + QG SSYTSP+G+ I   + ADETGY
Sbjct: 45  DGNYRYAYETSNGISATQEG---------LGGVSVQGGSSYTSPEGSVISVSYVADETGY 95

Query: 89  HASGAHLPTPPPIPDEIAKAI 109
           H  G H+   P +PD I +A+
Sbjct: 96  HPVGDHI---PKVPDYILRAL 113

Component of the cuticle of the pupa of fruit fly.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q7M4F1|CUD4_SCHGR Endocuticle structural glycoprotein SgAbd-4 OS=Schistocerca gregaria PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 62/108 (57%), Gaps = 2/108 (1%)

Query: 10  QAPPASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDL-EAQTAQGQSS 68
           QAPP   IPIIS       DG+Y++ +ETGNGI   E G LK   + D  +   AQG  S
Sbjct: 1   QAPPDKVIPIISQNEVRNPDGSYQWNYETGNGIKADETGTLKKGSKPDEGDFIVAQGSFS 60

Query: 69  YTSPDGTPIQTQWYA-DETGYHASGAHLPTPPPIPDEIAKAIATLPKL 115
           YT PDGT    Q+ A DE G+   GAH PTPPPIP  I +A+  L  L
Sbjct: 61  YTGPDGTAYSVQYQADDENGFVPQGAHFPTPPPIPPAIQRALDYLATL 108

Component of the abdominal endocuticle.

Schistocerca gregaria (taxid: 7010)

>sp|P21799|CUD4_LOCMI Endocuticle structural glycoprotein ABD-4 OS=Locusta migratoria PE=1 SV=3

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 62/108 (57%), Gaps = 2/108 (1%)

Query: 10  QAPPASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDL-EAQTAQGQSS 68
           QAP    IPIIS       DG+Y++ +ETGNGI   E G LK   + D  +   AQG  S
Sbjct: 1   QAPSDKVIPIISQNEVRNPDGSYQWNYETGNGIKADETGTLKKGSKPDEGDFIVAQGSFS 60

Query: 69  YTSPDGTPIQTQWYA-DETGYHASGAHLPTPPPIPDEIAKAIATLPKL 115
           YT PDGT  Q Q+ A DE G+   GAH PTPPPIP  I +A+  L  L
Sbjct: 61  YTGPDGTAYQVQYSADDENGFVPQGAHFPTPPPIPPAIQRALDYLATL 108

Component of the soft endocuticle of migratory locust.

Locusta migratoria (taxid: 7004)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
47605413	135	RecName: Full=Endocuticle structural gly	0.770	0.770	0.561	7e-27
389608145	145	cuticular protein PxutCPR32 [Papilio xut	0.688	0.641	0.634	1e-26
357623617	144	cuticular protein RR-1 motif 32 [Danaus	0.688	0.645	0.634	4e-26
290563462	154	cuticular protein RR-1 motif 32 precurso	0.688	0.603	0.602	4e-25
354549523	154	cuticular protein RR-1 motif 32 [Anthera	0.688	0.603	0.612	6e-25
312378093	158	hypothetical protein AND_10432 [Anophele	0.703	0.601	0.536	1e-22
91083861	164	PREDICTED: similar to cuticular protein	0.725	0.597	0.540	3e-22
166947671	145	putative cuticle protein CP5 [Leptinotar	0.792	0.737	0.512	3e-22
312378095	190	hypothetical protein AND_10431 [Anophele	0.844	0.6	0.466	5e-22
58388110	156	AGAP006012-PA [Anopheles gambiae str. PE	0.725	0.628	0.510	7e-22

>gi|47605413|sp|Q7M4F3.1|CUD2_SCHGR RecName: Full=Endocuticle structural glycoprotein SgAbd-2

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 79/105 (75%), Gaps = 1/105 (0%)

Query: 11  APPASP-IPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSY 69
           +PPA   +PI+ Y NE   DG+Y ++++TGNGIA QEQG LKN GQ+DLEA+  QG  SY
Sbjct: 13  SPPARQQVPILQYSNEVNPDGSYAYSYQTGNGIAAQEQGYLKNPGQRDLEAENVQGTFSY 72

Query: 70  TSPDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPK 114
           T+PDGTPI  ++ ADE G+ A GAHLPTPPPIP+ IA+++  + +
Sbjct: 73  TAPDGTPISLRYVADENGFRAEGAHLPTPPPIPEAIARSLEVIAR 117

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608145|dbj|BAM17684.1| cuticular protein PxutCPR32 [Papilio xuthus]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 70/93 (75%)

Query: 17  IPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTP 76
           IPI+    E   DGTY++++ETGNGIA QEQG LKNAG KD EAQ AQG  SYTSP+G P
Sbjct: 32  IPILRQTQEVNFDGTYQYSYETGNGIAAQEQGYLKNAGVKDAEAQVAQGSYSYTSPEGIP 91

Query: 77  IQTQWYADETGYHASGAHLPTPPPIPDEIAKAI 109
           I   + ADE G+ A GAHLPTPPPIP+ IA+A+
Sbjct: 92  IAVSYIADENGFRAEGAHLPTPPPIPEAIARAL 124

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623617|gb|EHJ74702.1| cuticular protein RR-1 motif 32 [Danaus plexippus]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 70/93 (75%)

Query: 17  IPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTP 76
           IPI+    E   DG+Y F++ETGNGI  QEQG LKN G KD EAQ AQG  SYTSP+G P
Sbjct: 33  IPILRQNQEINPDGSYSFSYETGNGINAQEQGYLKNPGIKDAEAQVAQGSFSYTSPEGIP 92

Query: 77  IQTQWYADETGYHASGAHLPTPPPIPDEIAKAI 109
           I  ++YADETG+HA GAHLP PPPIP+ IA+A+
Sbjct: 93  INVKYYADETGFHAEGAHLPVPPPIPEAIARAL 125

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290563462|ref|NP_001166719.1| cuticular protein RR-1 motif 32 precursor [Bombyx mori] gi|223671166|tpd|FAA00535.1| TPA: putative cuticle protein [Bombyx mori]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 69/93 (74%)

Query: 17  IPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTP 76
           IPI+S   +   DG+Y+F++ETGNGIA QEQG LKNAG KD EAQ AQG  +YTSP+G P
Sbjct: 32  IPILSQSQDVNFDGSYQFSYETGNGIAAQEQGYLKNAGAKDAEAQVAQGSFTYTSPEGIP 91

Query: 77  IQTQWYADETGYHASGAHLPTPPPIPDEIAKAI 109
           I   + ADE G+   GAHLPTPPPIP+ I +A+
Sbjct: 92  ISVSYVADENGFRPEGAHLPTPPPIPEAILRAL 124

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|354549523|gb|AER27818.1| cuticular protein RR-1 motif 32 [Antheraea yamamai]

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%)

Query: 17  IPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTP 76
           IPII    E  VDG+Y++++ETGNGIA QEQG LKN G KD EAQ AQG  SYTSP+G P
Sbjct: 33  IPIIKQTQEINVDGSYQYSYETGNGIAAQEQGYLKNPGIKDAEAQVAQGSFSYTSPEGVP 92

Query: 77  IQTQWYADETGYHASGAHLPTPPPIPDEIAKAI 109
           +   + ADE G+ A GAHLPTPPPIP+ I +A+
Sbjct: 93  VVLTYTADENGFRAEGAHLPTPPPIPEAILRAL 125

Source: Antheraea yamamai

Species: Antheraea yamamai

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378093|gb|EFR24758.1| hypothetical protein AND_10432 [Anopheles darlingi]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 65/95 (68%)

Query: 16  PIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGT 75
           PIPI+   +    DG+YKFA+E+GNGIA QE+G +KNAG KD E Q A G  SYT P G 
Sbjct: 38  PIPIVHSESYSSHDGSYKFAYESGNGIAAQEEGFVKNAGNKDHEVQVAHGSYSYTDPHGV 97

Query: 76  PIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIA 110
           P+   + ADE G+ A G+H+PTPPP+P E+  A A
Sbjct: 98  PVSISYVADENGFQAKGSHIPTPPPVPQELIDAYA 132

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083861|ref|XP_974125.1| PREDICTED: similar to cuticular protein 80, RR-1 family (AGAP009878-PA) [Tribolium castaneum] gi|270006758|gb|EFA03206.1| hypothetical protein TcasGA2_TC013126 [Tribolium castaneum]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 69/98 (70%)

Query: 17  IPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTP 76
           IPI+S  NE   DG++ +++ TG+G   Q QG LKNAG KD EA+  QG  SYT+PDGTP
Sbjct: 37  IPIVSETNEINPDGSFSYSYATGDGQQAQAQGYLKNAGVKDQEAEVIQGSYSYTAPDGTP 96

Query: 77  IQTQWYADETGYHASGAHLPTPPPIPDEIAKAIATLPK 114
           I   + ADE G+ A GAHLPTPPPIP+ I K++A + +
Sbjct: 97  ITITYIADENGFRAEGAHLPTPPPIPEAIQKSLALIAQ 134

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|166947671|gb|ABZ04122.1| putative cuticle protein CP5 [Leptinotarsa decemlineata]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 75/117 (64%), Gaps = 10/117 (8%)

Query: 16  PIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGT 75
           PIPIIS   E  +DG+Y+ ++ETGNGI  QEQG L+NAG KD E +  QG   YT+PDG+
Sbjct: 24  PIPIISQDREVNIDGSYRSSYETGNGIFAQEQGVLRNAGVKDAETENVQGGFRYTAPDGS 83

Query: 76  PIQTQWYADETGYHASGAHLP-------TPPPIPDEIAKAI---ATLPKLVEENYAP 122
           PIQ  + ADE G+HA G HLP       TPPPIP  I +++   A  P+  EE  AP
Sbjct: 84  PIQVTYTADENGFHAQGDHLPVPPIDDKTPPPIPVAILRSLEYNAAHPEEDEERPAP 140

Source: Leptinotarsa decemlineata

Species: Leptinotarsa decemlineata

Genus: Leptinotarsa

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378095|gb|EFR24759.1| hypothetical protein AND_10431 [Anopheles darlingi]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 73/120 (60%), Gaps = 6/120 (5%)

Query: 12  PPASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTS 71
           P   PIPI+   +    DG+YKF +E+ NGIA QEQG +KN G KD E Q A G  SYT 
Sbjct: 64  PTGKPIPIVHSESISNHDGSYKFGYESANGIAAQEQGFVKNGGSKDHEVQVAHGSFSYTD 123

Query: 72  PDGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAI---ATLPKLVE---ENYAPNPQ 125
           P G P+   + ADE G+ A G+H+PTPPP+P E+  A    A+ P+  E   ++Y P PQ
Sbjct: 124 PHGHPVSVSYVADENGFQAKGSHIPTPPPVPKELIDAYAKAASQPQHHEPEPQHYVPQPQ 183

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58388110|ref|XP_316045.2| AGAP006012-PA [Anopheles gambiae str. PEST] gi|55238815|gb|EAA11695.3| AGAP006012-PA [Anopheles gambiae str. PEST]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 64/98 (65%)

Query: 13  PASPIPIISYVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSP 72
           PA  IPI+   +    DG+YKFA+E+GNGI  QE+G +KNAG KD E Q A G  SYT P
Sbjct: 33  PAKQIPIVHSESYSSHDGSYKFAYESGNGITAQEEGFVKNAGSKDHEVQVAHGSYSYTDP 92

Query: 73  DGTPIQTQWYADETGYHASGAHLPTPPPIPDEIAKAIA 110
            G P+   + ADE G+   G+H+PTPPP+P E+  A A
Sbjct: 93  HGVPVSLSYVADENGFQVQGSHVPTPPPVPKELVDAYA 130

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
FB|FBgn0050045	144	Cpr49Aa "Cuticular protein 49A	0.740	0.694	0.514	1.6e-22
FB|FBgn0035686	239	Cpr65Az "Cuticular protein 65A	0.622	0.351	0.559	3e-21
FB|FBgn0033603	610	Cpr47Ef "Cuticular protein 47E	0.822	0.181	0.448	1.4e-19
FB|FBgn0036110	122	Cpr67Fb "Cuticular protein 67F	0.592	0.655	0.516	1.6e-17
FB|FBgn0033597	135	Cpr47Ea "Cuticular protein 47E	0.533	0.533	0.534	2.5e-17
FB|FBgn0033731	190	Cpr49Ah "Cuticular protein 49A	0.829	0.589	0.401	1.8e-16
FB|FBgn0033728	134	Cpr49Ae "Cuticular protein 49A	0.659	0.664	0.483	3.7e-16
FB|FBgn0037068	140	Cpr78Cb "Cuticular protein 78C	0.637	0.614	0.427	5.4e-15
FB|FBgn0035737	127	Cpr65Ec "Cuticular protein 65E	0.585	0.622	0.443	3e-14
FB|FBgn0037069	119	Cpr78Cc "Cuticular protein 78C	0.570	0.647	0.436	3e-14

FB|FBgn0050045 Cpr49Aa "Cuticular protein 49Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 55/107 (51%), Positives = 66/107 (61%)

Query:    29 DGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88
             DG+YK+ +ETGNGI  +E+G LKN G  D   Q AQG  SYTSP+G PI+  + ADE G+
Sbjct:    43 DGSYKYLYETGNGINAEEEGYLKNPGT-DNAGQVAQGSFSYTSPEGIPIRITYLADENGF 101

Query:    89 HASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNPQPAPGRGFGRK 135
                G HLPTPPPIP  I KA+A L         P PQ  PG GF  +
Sbjct:   102 QPQGDHLPTPPPIPPAIQKALAYLATA-----PPPPQEQPG-GFNNR 142

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

FB|FBgn0035686 Cpr65Az "Cuticular protein 65Az" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 47/84 (55%), Positives = 58/84 (69%)

Query:    29 DGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88
             DG+Y + +ETGNGI  +E G LKNAG +  EAQTA+G  SYTSP+G  I   + ADE G+
Sbjct:   126 DGSYMYEYETGNGIKAEEMGYLKNAGVEGAEAQTAEGSFSYTSPEGQEISLTYIADENGF 185

Query:    89 HASGAHLPTPPPIPDEIAKAIATL 112
                G HLPTPPPIP EI +A+  L
Sbjct:   186 QPQGDHLPTPPPIPIEIQEALDKL 209

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

FB|FBgn0033603 Cpr47Ef "Cuticular protein 47Ef" [Drosophila melanogaster (taxid:7227)]

 Score = 242 (90.2 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 52/116 (44%), Positives = 72/116 (62%)

Query:    22 YVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQW 81
             +VNE   DG Y+F++ETGNGI  QE+G +KN G ++ E  +  G  SYT+P+G  ++  +
Sbjct:   137 FVNENDGDGNYRFSYETGNGIKAQEEGTVKNKGSEN-EIPSVMGSYSYTNPEGELVEIMY 195

Query:    82 YADETGYHASGAHLPTPPPIPDEIAKAIAT--LPKLVEENYAPNP--QPAPGRGFG 133
              ADE G+  SG  LPTPPPIP+ IAK++A   +  L    Y+  P  Q A G G G
Sbjct:   196 TADENGFVPSGNALPTPPPIPEAIAKSLAAQGISILPGGGYSGGPGGQGAGGGGGG 251

GO:0008010 "structural constituent of chitin-based larval cuticle" evidence=ISS

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

FB|FBgn0036110 Cpr67Fb "Cuticular protein 67Fb" [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/89 (51%), Positives = 55/89 (61%)

Query:    22 YVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQW 81
             Y NE   DG+Y + + T NGI  QE G     G +      A G  SY +PDGTPIQ ++
Sbjct:    29 YRNEIKPDGSYSWEYGTSNGIDAQESGV---GGVQ------AAGSVSYAAPDGTPIQLEY 79

Query:    82 YADETGYHASGAHLPTPPPIPDEIAKAIA 110
              ADE GY  +GAHLPTPPPIPD I KA+A
Sbjct:    80 TADENGYRPTGAHLPTPPPIPDYILKALA 108

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

GO:0032504 "multicellular organism reproduction" evidence=IEP

GO:0005615 "extracellular space" evidence=IDA

FB|FBgn0033597 Cpr47Ea "Cuticular protein 47Ea" [Drosophila melanogaster (taxid:7227)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 39/73 (53%), Positives = 48/73 (65%)

Query:    29 DGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88
             DG+Y++ +ET NGI   E G LKN G + +EAQ  QG  SYT PDG      + ADE GY
Sbjct:    53 DGSYQYNYETSNGIRADEAGYLKNPGSQ-IEAQVMQGSYSYTGPDGVVYTITYIADENGY 111

Query:    89 HASGAHLPTPPPI 101
              A GAH+PTPPP+
Sbjct:   112 RAEGAHIPTPPPV 124

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

FB|FBgn0033731 Cpr49Ah "Cuticular protein 49Ah" [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 47/117 (40%), Positives = 62/117 (52%)

Query:    22 YVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQW 81
             Y  E   DG+YK  +ETGN I  +E G LK+            GQ SY SP+GT +  Q+
Sbjct:    56 YNKEQSDDGSYKTEYETGNSIIHEETGFLKDFDTNPNGVLVQHGQYSYQSPEGTLVNVQY 115

Query:    82 YADETGYHASGAHLPTPPPIPDEIAKAIATLP---KLVEENYAPNPQPAPGRGFGRK 135
              ADE G+ A+G H+PTPP IP+EI K +  +    KL +E      +  P   F RK
Sbjct:   116 TADENGFRATGDHIPTPPAIPEEIQKGLDQIYAGIKLQQERLEQRAKTDPD--FARK 170

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0033728 Cpr49Ae "Cuticular protein 49Ae" [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 45/93 (48%), Positives = 55/93 (59%)

Query:    25 EPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDL-EAQTAQGQSSYTSPDGTPIQTQWYA 83
             EP  DG+Y +A+ET NGI  +E G LK A   D  +   A+G  SYTSP+G  I   + A
Sbjct:    38 EP--DGSYNYAYETANGIKAEETGTLKKATSPDSSDVIIARGSVSYTSPEGNLITLNYSA 95

Query:    84 D-ETGYHASGAHLPTPPPIPDEIAKAIATLPKL 115
             D E G+   G HLPTPPPIP  I KA+  L  L
Sbjct:    96 DDENGFQPQGDHLPTPPPIPPAIQKALDYLLSL 128

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

FB|FBgn0037068 Cpr78Cb "Cuticular protein 78Cb" [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 41/96 (42%), Positives = 56/96 (58%)

Query:    29 DGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88
             +G +K+AF+T NGI VQ  G+        LE     G  SYTSP+G PI+T++ ADE G+
Sbjct:    52 EGVFKYAFKTSNGIDVQAAGS-------PLETI---GIYSYTSPEGVPIETRYIADELGF 101

Query:    89 HASGAHLPTPPPIPDEIAKAIATLPKLVEENYAPNP 124
             H  G HLP PPP PD I +++  +    E+    NP
Sbjct:   102 HVVGRHLPQPPPTPDYILRSLEYIRTHTEDGNLKNP 137

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

FB|FBgn0035737 Cpr65Ec "Cuticular protein 65Ec" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 39/88 (44%), Positives = 52/88 (59%)

Query:    22 YVNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQW 81
             Y ++   DG+Y + ++T NGIA QE G     G        A G ++Y +PDG  IQ  +
Sbjct:    31 YKSDLKEDGSYAYQYQTSNGIAGQESGV----G-----GYYASGSNAYYAPDGQLIQLTY 81

Query:    82 YADETGYHASGAHLPTPPPIPDEIAKAI 109
              AD  GYH +GAHLPTPPPIP  I K++
Sbjct:    82 TADSNGYHPAGAHLPTPPPIPASILKSL 109

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

FB|FBgn0037069 Cpr78Cc "Cuticular protein 78Cc" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 38/87 (43%), Positives = 48/87 (55%)

Query:    23 VNEPPVDGTYKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWY 82
             VN    +G Y++AFET NGI  QE G +              G SSY SP+G PI   + 
Sbjct:    33 VNPADAEGNYQYAFETSNGIQAQEAGNVNGIS----------GSSSYISPEGVPISLTYV 82

Query:    83 ADETGYHASGAHLPTPPPIPDEIAKAI 109
             ADE G+   G HLPT PPIP+ I +A+
Sbjct:    83 ADENGFQPQGDHLPTAPPIPEAILRAL 109

GO:0008010 "structural constituent of chitin-based larval cuticle" evidence=ISS

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	135
pfam00379	51	pfam00379, Chitin_bind_4, Insect cuticle protein	4e-11

>gnl|CDD|215886 pfam00379, Chitin_bind_4, Insect cuticle protein

 Score = 53.8 bits (130), Expect = 4e-11
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 32 YKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY 88
          Y F +ET +G   +E    ++ G         +G  SY  PDG      + ADE G+
Sbjct: 1  YSFGYETSDGKTQEEGRGTEDDGG------VVKGSYSYVDPDGKLRTVTYVADENGF 51

Many insect cuticular proteins include a 35-36 amino acid motif known as the R&R consensus. The extensive conservation of this region led to the suggestion that it functions to bind chitin. Provocatively, it has no sequence similarity to the well-known cysteine-containing chitin-binding domain found in chitinases and some peritrophic membrane proteins. Chitin binding has been shown experimentally for this region. Thus arthropods have two distinct classes of chitin binding proteins, those with the chitin-binding domain found in lectins, chitinases and peritrophic membranes (cysCBD) and those with the cuticular protein chitin-binding domain (non-cysCBD). Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PF00379	52	Chitin_bind_4: Insect cuticle protein; InterPro: I	99.71
PF06004	50	DUF903: Bacterial protein of unknown function (DUF	88.34

>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin

Probab=99.71  E-value=4e-17  Score=103.43  Aligned_cols=52  Identities=37%  Similarity=0.700  Sum_probs=46.3

Q ss_pred             eeeEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEEEEeCCCCc
Q psy10193         32 YKFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQWYADETGY   88 (135)
Q Consensus        32 Y~f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~YtADenGf   88 (135)
                      |+|+|+++|| .++|.+.   .++ ++..++|+|+|+|++|||+.++|+|+||++||
T Consensus         1 Y~f~Y~~~dg-~~~e~~~---~~~-~~~~~~v~GsY~y~~pdG~~~~V~Y~Ad~~Gf   52 (52)
T PF00379_consen    1 YSFGYETSDG-SRQEEGR---PET-EDEGGVVRGSYSYIDPDGQTRTVTYVADENGF   52 (52)
T ss_pred             CeeEeEcCCC-CEEEEEE---ccc-CCCCCEEEEEEEEECCCCCEEEEEEECCCCCC
Confidence            7899999999 8888877   222 56778999999999999999999999999998

The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle

>PF06004 DUF903: Bacterial protein of unknown function (DUF903); InterPro: IPR010305 This family consists of several small bacterial proteins several of which are classified as putative lipoproteins

Probab=88.34  E-value=1.4  Score=27.90  Aligned_cols=39  Identities=28%  Similarity=0.449  Sum_probs=28.4

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||......|..+-.        .-.|.|+|.+.+|+.+.|+
T Consensus         2 yvi~t~dG~~i~t~gkP~~D--------~~tG~~~y~D~~G~~~qIn   40 (50)
T PF06004_consen    2 YVITTNDGRTIVTDGKPKYD--------KDTGMYSYTDADGKEQQIN   40 (50)
T ss_dssp             EEEEETTSEEEEESSEEEEE--------TTTTEEEEEBTTS-EEEEE
T ss_pred             cEEEeCCCcEEEeCCCcccc--------CCCCcEEEECCCCCEEEEc
Confidence            34467788877777766532        3589999999999998875

The function of this family is unknown.; PDB: 2RB6_B 3BDU_F 2RA2_F 2RD1_C 3FIF_H 2JN0_A 2K57_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
2rd1_A	62	Putative outer membrane lipoprotein; X-RAY, NESG,	87.96
2k57_A	61	Putative lipoprotein; structural genomics, PSI-2,	86.92
3bdu_A	62	Putative lipoprotein; X_RAY, NESG, Q6D8G1, structu	85.96
2rb6_A	61	Uncharacterized protein; NESG, Q8EI81_sheon, struc	85.85
2jn0_A	61	Hypothetical lipoprotein YGDR; solution structure,	83.19
2ra2_A	64	Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8,	82.17

>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6

Probab=87.96  E-value=1.2  Score=28.52  Aligned_cols=39  Identities=26%  Similarity=0.450  Sum_probs=29.9

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||..-...|.++-.        .-.|.|+|.+.+|+.+.|+
T Consensus         5 yvitt~DG~~IvT~gKP~~D--------~dTGm~sY~D~~G~~~qIn   43 (62)
T 2rd1_A            5 YVMTTKNGQTIVTQGKPQLD--------KETGMTSYTDQEGNQREIN   43 (62)
T ss_dssp             EEEEETTSCEEEEESCCEEE--------TTTTEEEEECTTSCEEEEE
T ss_pred             eEEEeCCCcEEEcCCCccee--------CCCCCEEEEcCCCCEEEEc
Confidence            44567888888777776532        3489999999999998875

>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6

Probab=86.92  E-value=1.2  Score=28.38  Aligned_cols=39  Identities=15%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||..-...|.++-.        .-.|.|+|.|.+|+.+.|+
T Consensus         5 yvitt~DG~~IvT~gKP~~D--------~dTGmysY~D~~G~~~qIn   43 (61)
T 2k57_A            5 TVITLNDGREIQAVDTPKYD--------EESGFYEFKQLDGKQTRIN   43 (61)
T ss_dssp             EEEEESSSCEEEESSCCEEC--------TTTCEEEEEBTTSCEEEEE
T ss_pred             eEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence            34467788877777666532        3489999999999998874

>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6

Probab=85.96  E-value=1.1  Score=28.67  Aligned_cols=39  Identities=26%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||..-...|.++-.        .-.|.|+|.|.+|+.+.|+
T Consensus         5 yvitt~DG~~IvT~gKP~~D--------~dTGmysY~D~~G~~~qIn   43 (62)
T 3bdu_A            5 YVLHTNDGRTIVAEGKPKVD--------DETGMISYTDAYGQQQQIN   43 (62)
T ss_dssp             EEEEETTSCEEEEESCCEEC--------TTTSSEEEEBTTSCEEEEC
T ss_pred             eEEEECCCcEEEcCCCccee--------CCCCCEEEEcCCCCEEEEc
Confidence            44567888888777776532        3489999999999998764

>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6

Probab=85.85  E-value=1.5  Score=27.95  Aligned_cols=39  Identities=18%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||..-...|.++-.        .-.|.|+|.|.+|+.+.|+
T Consensus         5 yvitT~DG~~IvT~GKP~~D--------~dTGm~sY~D~~G~~~qIn   43 (61)
T 2rb6_A            5 YIMSTKDGKMITSDSKPKLD--------KTTGMYLYYDEDGREVMIK   43 (61)
T ss_dssp             EEEEETTSCEEEESSCCEEE--------TTTTEEEEECTTSCEEEEE
T ss_pred             EEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence            34467788877766665521        3489999999999998875

>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A

Probab=83.19  E-value=1.6  Score=27.91  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=27.7

Q ss_pred             EEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         35 AFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        35 ~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      --.+.||..-...|.++-.        .-.|.|+|.|.+|+.+.|+
T Consensus         6 vitT~DG~~IvT~GKP~~D--------~dTGm~sY~D~~G~~~qIn   43 (61)
T 2jn0_A            6 VMATKDGRMILTDGKPEID--------DDTGLVSYHDQQGNAMQIN   43 (61)
T ss_dssp             EEEETTSCEEEBCCCCEEE--------TTTTEEEEEBTTSCEEEEE
T ss_pred             EEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence            3457778776666655421        3589999999999998875

>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6

Probab=82.17  E-value=1.4  Score=28.34  Aligned_cols=39  Identities=21%  Similarity=0.429  Sum_probs=28.0

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||..-...|..+-.        .-.|.|+|.|.+|+.+.|+
T Consensus         6 yVitt~DG~~IvT~GKP~~D--------~dTGm~sY~D~~G~~~qIn   44 (64)
T 2ra2_A            6 YVMHTNDGRSIVTDGKPQTD--------NDTGMISYKDANGNKQQIN   44 (64)
T ss_dssp             EEEEETTSCEEECSSCCEEC--------TTTCSEEEECTTSCEEEEC
T ss_pred             EEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence            44467788876666655421        3589999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d2rd1a1	52	Putative outer membrane lipoprotein STM1585 {Salmo	86.8
d2rb6a1	52	Uncharacterized protein SO0963 {Shewanella oneiden	84.79
d2ra2a1	53	Uncharacterized protein YgdI {Salmonella typhimuri	84.49
d2jn0a1	50	Hypothetical lipoprotein YgdR {Escherichia coli [T	83.39
d3bdua1	53	Uncharacterized protein ECA1013 {Erwinia carotovor	82.19

>d2rd1a1 b.38.1.6 (A:22-73) Putative outer membrane lipoprotein STM1585 {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: YgdI/YgdR-like
domain: Putative outer membrane lipoprotein STM1585
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.80  E-value=0.8  Score=26.96  Aligned_cols=39  Identities=26%  Similarity=0.450  Sum_probs=29.7

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||......|..+-.        .-.|-|+|.+.+|+...++
T Consensus         3 yvm~t~dGr~I~t~gKP~~D--------~dTGm~sY~d~~G~~~qIN   41 (52)
T d2rd1a1           3 YVMTTKNGQTIVTQGKPQLD--------KETGMTSYTDQEGNQREIN   41 (52)
T ss_dssp             EEEEETTSCEEEEESCCEEE--------TTTTEEEEECTTSCEEEEE
T ss_pred             eEEEeCCCcEEEcCCCcccc--------CCCCCEEEEcCCCCEEEeC
Confidence            45567888887777766532        2489999999999988764

>d2rb6a1 b.38.1.6 (A:25-76) Uncharacterized protein SO0963 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: YgdI/YgdR-like
domain: Uncharacterized protein SO0963
species: Shewanella oneidensis [TaxId: 70863]

Probab=84.79  E-value=0.99  Score=26.49  Aligned_cols=40  Identities=18%  Similarity=0.323  Sum_probs=30.0

Q ss_pred             eeEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         33 KFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        33 ~f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      .|--.+.||......|..+-.        .-.|.|+|.+.+|+...++
T Consensus         3 ~yvm~t~dG~~i~T~gKP~~D--------~dtG~~~y~d~~G~~~~In   42 (52)
T d2rb6a1           3 QYIMSTKDGKMITSDSKPKLD--------KTTGMYLYYDEDGREVMIK   42 (52)
T ss_dssp             EEEEEETTSCEEEESSCCEEE--------TTTTEEEEECTTSCEEEEE
T ss_pred             ceEEEeCCCcEEEeCCCcccc--------CCCCcEEEECCCCCEEEEc
Confidence            344567888887777766532        3489999999999988764

>d2ra2a1 b.38.1.6 (A:4-56) Uncharacterized protein YgdI {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: YgdI/YgdR-like
domain: Uncharacterized protein YgdI
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.49  E-value=0.51  Score=27.95  Aligned_cols=39  Identities=21%  Similarity=0.429  Sum_probs=29.2

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||......|..+-.        .-.|-|||.+.+|+...++
T Consensus         3 yvm~t~DG~~IvT~gKP~~D--------~dTG~~sY~d~~G~~~qIn   41 (53)
T d2ra2a1           3 YVMHTNDGRSIVTDGKPQTD--------NDTGMISYKDANGNKQQIN   41 (53)
T ss_dssp             EEEEETTSCEEECSSCCEEC--------TTTCSEEEECTTSCEEEEC
T ss_pred             eEEEecCCcEEEeCCCcccc--------CCCCCEEEEcCCCCEEEec
Confidence            44577888887777766532        2489999999999988763

>d2jn0a1 b.38.1.6 (A:4-53) Hypothetical lipoprotein YgdR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: YgdI/YgdR-like
domain: Hypothetical lipoprotein YgdR
species: Escherichia coli [TaxId: 562]

Probab=83.39  E-value=0.77  Score=26.82  Aligned_cols=39  Identities=21%  Similarity=0.390  Sum_probs=28.2

Q ss_pred             eEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         34 FAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        34 f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      |--.+.||......|..+-.        .-.|-|+|.+.+|+...++
T Consensus         2 yvm~t~dG~~I~T~gKP~~D--------~dTGm~~Y~d~~G~~~qIN   40 (50)
T d2jn0a1           2 YVMATKDGRMILTDGKPEID--------DDTGLVSYHDQQGNAMQIN   40 (50)
T ss_dssp             CEEEETTSCEEEBCCCCEEE--------TTTTEEEEEBTTSCEEEEE
T ss_pred             ceEEcCCCCEEEeCCCcccc--------CCCCCEEEEcCCCCEEEEc
Confidence            33467788777666665532        2489999999999988764

>d3bdua1 b.38.1.6 (A:2-54) Uncharacterized protein ECA1013 {Erwinia carotovora [TaxId: 554]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: YgdI/YgdR-like
domain: Uncharacterized protein ECA1013
species: Erwinia carotovora [TaxId: 554]

Probab=82.19  E-value=1.1  Score=26.41  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             eeEEEcCCCceEEEeeeeecCCccccccceeeeEEEEECCCCcEEEEE
Q psy10193         33 KFAFETGNGIAVQEQGALKNAGQKDLEAQTAQGQSSYTSPDGTPIQTQ   80 (135)
Q Consensus        33 ~f~Ye~~dG~~~~E~G~~k~~G~~~~~~~~v~GsYsy~~pDG~~~~V~   80 (135)
                      .|--.+.||......|..+-.        .-.|.|+|.+.+|+...++
T Consensus         3 ~yv~~t~dG~~i~T~gKP~~D--------~dtG~~~y~d~~G~~~qIn   42 (53)
T d3bdua1           3 NYVLHTNDGRTIVAEGKPKVD--------DETGMISYTDAYGQQQQIN   42 (53)
T ss_dssp             EEEEEETTSCEEEEESCCEEC--------TTTSSEEEEBTTSCEEEEC
T ss_pred             ceEEEecCCcEEEeCCCceec--------CCCCcEEEECCCCCEEEEc
Confidence            345578888888888776632        2489999999999988763