Psyllid ID: psy10208
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 143 | 2.2.26 [Sep-21-2011] | |||||||
| Q9V7Y2 | 545 | Sphingosine-1-phosphate l | yes | N/A | 0.986 | 0.258 | 0.602 | 4e-48 | |
| Q5R4G0 | 568 | Sphingosine-1-phosphate l | yes | N/A | 0.958 | 0.241 | 0.430 | 6e-32 | |
| O95470 | 568 | Sphingosine-1-phosphate l | yes | N/A | 0.958 | 0.241 | 0.430 | 6e-32 | |
| Q8R0X7 | 568 | Sphingosine-1-phosphate l | yes | N/A | 0.958 | 0.241 | 0.437 | 2e-31 | |
| Q8CHN6 | 568 | Sphingosine-1-phosphate l | yes | N/A | 0.958 | 0.241 | 0.430 | 9e-31 | |
| Q9C509 | 544 | Sphingosine-1-phosphate l | yes | N/A | 0.930 | 0.244 | 0.333 | 3e-21 | |
| Q52RG7 | 539 | Sphingosine-1-phosphate l | yes | N/A | 0.923 | 0.244 | 0.313 | 3e-19 | |
| Q54RV9 | 528 | Sphingosine-1-phosphate l | yes | N/A | 0.951 | 0.257 | 0.330 | 2e-18 | |
| Q9Y194 | 552 | Sphingosine-1-phosphate l | no | N/A | 0.958 | 0.248 | 0.307 | 3e-14 | |
| Q5ZTI6 | 601 | Probable sphingosine-1-ph | yes | N/A | 0.972 | 0.231 | 0.303 | 6e-14 |
| >sp|Q9V7Y2|SGPL_DROME Sphingosine-1-phosphate lyase OS=Drosophila melanogaster GN=Sply PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 110/141 (78%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ T+ I++T +YIE+ +R +DG+FIFG PATSVIALGS+VF I+RLS L K GWN N
Sbjct: 405 YLEATKRIVDTARYIERGVRDIDGIFIFGKPATSVIALGSNVFDIFRLSDSLCKLGWNLN 464
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQFP GIH+C+T MHTQPGVADKFI+DVR A IM++PG + G MA+YG + SIPDR
Sbjct: 465 ALQFPSGIHLCVTDMHTQPGVADKFIADVRSCTAEIMKDPGQPVVGKMALYGMAQSIPDR 524
Query: 123 SIIGDFTRYYIDATYYTPDSK 143
S+IG+ TR ++ + YYTP K
Sbjct: 525 SVIGEVTRLFLHSMYYTPSQK 545
|
Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Sphingolipid catabolism is required for normal development including viability, reproduction and muscle development. Drosophila melanogaster (taxid: 7227) EC: 4EC: .EC: 1EC: .EC: 2EC: .EC: 2EC: 7 |
| >sp|Q5R4G0|SGPL1_PONAB Sphingosine-1-phosphate lyase 1 OS=Pongo abelii GN=SGPL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ G+F+FG P SVIALGS F IYRLS+ + +GWN N
Sbjct: 416 YVEATKQIIKTARFLKSELENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +H + VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 QLQFPPSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
+++ + + ++D+ Y T
Sbjct: 536 NMVAELSSVFLDSLYST 552
|
Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis. Pongo abelii (taxid: 9601) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
| >sp|O95470|SGPL1_HUMAN Sphingosine-1-phosphate lyase 1 OS=Homo sapiens GN=SGPL1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ G+F+FG P SVIALGS F IYRLS+ + +GWN N
Sbjct: 416 YVEATKQIIKTARFLKSELENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +H + VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 QLQFPPSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
+++ + + ++D+ Y T
Sbjct: 536 NMVAELSSVFLDSLYST 552
|
Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
| >sp|Q8R0X7|SGPL1_MOUSE Sphingosine-1-phosphate lyase 1 OS=Mus musculus GN=Sgpl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ +FIFG P SVIALGS+ F IYRLS+ ++ +GWN N
Sbjct: 416 YVEATKQIIKTARFLKSELENIKNIFIFGDPQLSVIALGSNDFDIYRLSNMMSAKGWNFN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +HT+ VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 YLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQATIDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
++ + + ++D Y T
Sbjct: 536 KLVAEISSVFLDCLYTT 552
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Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
| >sp|Q8CHN6|SGPL1_RAT Sphingosine-1-phosphate lyase 1 OS=Rattus norvegicus GN=Sgpl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ +FI G P SVIALGS+ F IYRLS+ ++ +GWN N
Sbjct: 416 YVEATKQIIKTARFLKSELENIKNIFILGDPQLSVIALGSNDFDIYRLSNMMSAKGWNFN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +HT+ VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 YLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQATIDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
++ + + ++D+ Y T
Sbjct: 536 KMVAEISSVFLDSLYST 552
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Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
| >sp|Q9C509|SGPL_ARATH Sphingosine-1-phosphate lyase OS=Arabidopsis thaliana GN=At1g27980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ T I+E K +E+ +R + LF+ G P +++A GS I+ ++ ++ +GW+ N
Sbjct: 412 YLQNTSKIMEASKRLEEGVREIHELFVIGKPDMTIVAFGSKALDIFEVNDIMSSKGWHLN 471
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQ P IHICIT H V D F+ D+RE + + NPG G+ +YG + +PDR
Sbjct: 472 ALQRPNSIHICITLQHVP--VVDDFLRDLREAVETVKANPGPITGGLAPIYGAAGKMPDR 529
Query: 123 SIIGDFTRYYIDATY 137
++ + ++D+ Y
Sbjct: 530 GMVNELLVSFMDSQY 544
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Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
| >sp|Q52RG7|SGPL_ORYSJ Sphingosine-1-phosphate lyase OS=Oryza sativa subsp. japonica GN=SPL PE=2 SV=2 | Back alignment and function description |
|---|
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ T I+E K I++ + + GLF+ G P +V+A GSD I+ ++ ++ +GW+ N
Sbjct: 407 YMENTGHIMEVSKKIQRGIEDIPGLFVIGKPDMTVVAFGSDSVDIFEVNDIMSSKGWHLN 466
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQ P +HIC+T HT + ++F+ D+++ + + NPG G +YG + +PDR
Sbjct: 467 ALQRPNSLHICVTLQHTV--IYEEFLKDLKDSVDTVKANPGPISGGRAPIYGAAGKMPDR 524
Query: 123 SIIGDFTRYYIDAT 136
++ + ++DA+
Sbjct: 525 GMVRELLVEFMDAS 538
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Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis. Oryza sativa subsp. japonica (taxid: 39947) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
| >sp|Q54RV9|SGPL_DICDI Sphingosine-1-phosphate lyase OS=Dictyostelium discoideum GN=sglA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 83/142 (58%), Gaps = 6/142 (4%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
++ + ++ET K I K L+S++G+ I G P V+A D +I+ ++ ++K+GW+ N
Sbjct: 387 FLEKAKGVMETTKKIIKGLQSINGVKIIGDPKAMVVAFTCD--NIFYVNDYMSKKGWHLN 444
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPG-LQLEGVMAMYGKSHSIPD 121
+LQ P +H+C+T G+ FI D+++ + ++ N G L +G +YG +HS+PD
Sbjct: 445 ALQRPNSLHVCVTAKMI--GMESLFIEDLKDSIKLVKDNSGSLPKDGTAPIYGSAHSVPD 502
Query: 122 RSIIGDFTRYYIDATYYTPDSK 143
R ++G +ID TPD K
Sbjct: 503 REMVGTILSDFID-ELITPDYK 523
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Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine (By similarity). Sphingosine-1-phosphate (S1P) probably acts intracellularly as a second messenger perhaps by promoting cell proliferation; the absence of S1P lyase increases its concentration. This leads to increased lateral pseudopod formation as well as defects in the efficiency of chemotaxis (PubMed:15476260). Overexpression of S1P lyase causes decreased growth rates, entry into stationary phase at lower cell density and increased sensitivity to the antitumor agents cisplatin and carboplatin; these effects are more pronounced in cells that express more enzyme (PubMed:15190000). Dictyostelium discoideum (taxid: 44689) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
| >sp|Q9Y194|SGPL_CAEEL Sphingosine-1-phosphate lyase OS=Caenorhabditis elegans GN=spl-1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV I++ + + +++ + + +G S++A + +IY +S + K GWN N
Sbjct: 410 YVRRCAQIVKHTRMLAEKIEKIKWIKPYGKSDVSLVAFSGNGVNIYEVSDKMMKLGWNLN 469
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVR---EELAIIMQNPGLQLEGVMAMYGKSHSI 119
+LQ P IHIC+T V + F D+ EELA + G+ AMYG + +
Sbjct: 470 TLQNPAAIHICLTINQANEEVVNAFAVDLEKICEELAAKGEQKADS--GMAAMYGMAAQV 527
Query: 120 PDRSIIGDFTRYYIDATYYTPDS 142
P +S++ + YIDATY P S
Sbjct: 528 P-KSVVDEVIALYIDATYSAPPS 549
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Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine (By similarity). Essential for normal development, growth and reproduction. Caenorhabditis elegans (taxid: 6239) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
| >sp|Q5ZTI6|SGPL_LEGPH Probable sphingosine-1-phosphate lyase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg2176 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 16/155 (10%)
Query: 3 YVNTTRSIIETVKYIEKELRSM---------DGLFIFGTPATSVIALGSDVFHIYRLSSG 53
Y +SII I+KEL ++ + ++++G P S++ S+ + + ++
Sbjct: 423 YQEIAKSIITLRNAIQKELTTLLEEGNGLTSEDIYVYGNPQWSILGFRSNTCNAHFIADE 482
Query: 54 LNKRGWNTNSLQFPVGIHICITHMHTQ-PGVADKFISDVREELAIIMQN--PGLQLEGVM 110
L KRGW N LQ P G H+C+TH+HT G +FI D+RE + I ++N PG + G +
Sbjct: 483 LEKRGWKLNLLQNPDGFHLCLTHVHTLVKGFETQFIKDLREAV-IDVKNYPPGKKPSGNV 541
Query: 111 AMYGKSHSIP---DRSIIGDFTRYYIDATYYTPDS 142
+YG +P R I + + ++ T +P S
Sbjct: 542 KVYGAVGMMPIELQREICKQYQKARLNYTSASPGS 576
|
Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine (By similarity). Possibly implicated in influencing the macrophage autophagy pathway. Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624) EC: 4 EC: . EC: 1 EC: . EC: 2 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 143 | ||||||
| 350403974 | 552 | PREDICTED: sphingosine-1-phosphate lyase | 0.986 | 0.255 | 0.624 | 6e-50 | |
| 340725243 | 552 | PREDICTED: LOW QUALITY PROTEIN: sphingos | 0.986 | 0.255 | 0.624 | 7e-50 | |
| 383857355 | 548 | PREDICTED: sphingosine-1-phosphate lyase | 0.979 | 0.255 | 0.614 | 1e-49 | |
| 91076782 | 543 | PREDICTED: similar to sphingosine phosph | 0.979 | 0.257 | 0.65 | 2e-49 | |
| 322784374 | 500 | hypothetical protein SINV_04217 [Solenop | 0.965 | 0.276 | 0.623 | 6e-49 | |
| 328712953 | 541 | PREDICTED: sphingosine-1-phosphate lyase | 0.965 | 0.255 | 0.623 | 8e-49 | |
| 307205249 | 540 | Sphingosine-1-phosphate lyase [Harpegnat | 0.986 | 0.261 | 0.602 | 2e-48 | |
| 307181867 | 522 | Sphingosine-1-phosphate lyase [Camponotu | 0.993 | 0.272 | 0.591 | 3e-48 | |
| 157135111 | 538 | sphingosine phosphate lyase [Aedes aegyp | 0.979 | 0.260 | 0.592 | 5e-48 | |
| 66524811 | 549 | PREDICTED: sphingosine-1-phosphate lyase | 0.986 | 0.256 | 0.588 | 9e-48 |
| >gi|350403974|ref|XP_003486967.1| PREDICTED: sphingosine-1-phosphate lyase-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 116/141 (82%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ +TR IIET KYIE+ LR +DG+FIFGTPATSVIALGS+ FHIY+LS LN RGWN N
Sbjct: 403 YLESTRKIIETTKYIEQRLRKLDGIFIFGTPATSVIALGSNDFHIYKLSEALNVRGWNLN 462
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQFP GIH+C+T++HTQ GVAD+F++DV EL+II++NP ++G A+YG S SIPDR
Sbjct: 463 TLQFPCGIHLCVTYVHTQLGVADQFLNDVETELSIILKNPEAPVDGKFAIYGMSQSIPDR 522
Query: 123 SIIGDFTRYYIDATYYTPDSK 143
SI+GDF + ++D+ Y+TP +K
Sbjct: 523 SIVGDFAKCFLDSIYFTPGNK 543
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340725243|ref|XP_003400982.1| PREDICTED: LOW QUALITY PROTEIN: sphingosine-1-phosphate lyase-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 117/141 (82%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ +T+ IIET KYIE+ LR +DG+FIFGTPATSVIALGS+ FHIY+LS LN RGWN N
Sbjct: 403 YLESTKKIIETTKYIEQRLRILDGIFIFGTPATSVIALGSNDFHIYKLSEALNVRGWNLN 462
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQFP GIH+C+T++HTQ GVAD+F+SDV EL+II++NP ++G +A+YG S SIPDR
Sbjct: 463 TLQFPCGIHLCVTYVHTQLGVADQFLSDVETELSIILKNPEAPVDGKLAIYGMSQSIPDR 522
Query: 123 SIIGDFTRYYIDATYYTPDSK 143
SI+GDF + ++D+ Y+TP +K
Sbjct: 523 SIVGDFAKCFLDSIYFTPGNK 543
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857355|ref|XP_003704170.1| PREDICTED: sphingosine-1-phosphate lyase-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 86/140 (61%), Positives = 113/140 (80%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ T+ II+T +YIE+ LR MDG+FIFGTPATSVIA+GS+ FHIY+LS LN +GWN N
Sbjct: 400 YLEATKKIIDTTRYIEQRLRKMDGIFIFGTPATSVIAMGSNDFHIYKLSEALNAKGWNLN 459
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQFP GIHIC+T++HTQPGVAD+F+SDV EL + +QNP +EG +A+YG S SIPDR
Sbjct: 460 TLQFPSGIHICVTYVHTQPGVADQFLSDVEAELHVALQNPKSPVEGSLAIYGMSQSIPDR 519
Query: 123 SIIGDFTRYYIDATYYTPDS 142
SI+GDF + ++DA Y+ P +
Sbjct: 520 SIVGDFVKCFLDAMYFAPKN 539
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076782|ref|XP_967792.1| PREDICTED: similar to sphingosine phosphate lyase isoform 1 [Tribolium castaneum] gi|270001960|gb|EEZ98407.1| hypothetical protein TcasGA2_TC000875 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 110/140 (78%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV TR II T +YIEK LR M G+FIFG PATSVIALGS+ FHIYRL S LNK GWN N
Sbjct: 403 YVQATRDIIHTTRYIEKGLRRMKGIFIFGQPATSVIALGSNDFHIYRLGSALNKLGWNLN 462
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP GIHIC+THMHTQ GVADKF++DV+ LA I++ P + +EG MA+YG + S+PDR
Sbjct: 463 VLQFPSGIHICVTHMHTQQGVADKFLNDVQNSLAEILKEPDVPVEGKMAIYGVAQSVPDR 522
Query: 123 SIIGDFTRYYIDATYYTPDS 142
SI+ DFTR ++D+ YYTP +
Sbjct: 523 SIVTDFTRLFLDSMYYTPKT 542
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322784374|gb|EFZ11345.1| hypothetical protein SINV_04217 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 112/138 (81%)
Query: 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNT 61
YV +T+ IIET +YIE +LR+MDG+FIFG PATSV+A+GS FHIYRLS L+ +GWN
Sbjct: 356 EYVRSTKRIIETTRYIEHKLRTMDGIFIFGAPATSVVAIGSKDFHIYRLSEALSDKGWNL 415
Query: 62 NSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPD 121
N+LQFP GIHICITH+HT+PGVAD+F+ DVR EL IIM+ P ++G +AMYG S SIPD
Sbjct: 416 NTLQFPCGIHICITHVHTEPGVADQFLEDVRTELKIIMETPDTPVQGKLAMYGMSQSIPD 475
Query: 122 RSIIGDFTRYYIDATYYT 139
RS++GD T+ ++D+ Y+T
Sbjct: 476 RSVVGDLTKGFLDSMYFT 493
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328712953|ref|XP_001943099.2| PREDICTED: sphingosine-1-phosphate lyase-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 113/138 (81%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ +T+ +++T +IE++LRSM G+FIFG P TSVIA+GSD F+IYRLS LN RGWN N
Sbjct: 403 YITSTKEVMDTKIFIEEQLRSMKGIFIFGKPTTSVIAIGSDDFNIYRLSDALNSRGWNLN 462
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQFP+GIHICITH+HT+PGVA FI D+R+EL I++ P ++L G MAMYG S ++PDR
Sbjct: 463 TLQFPIGIHICITHLHTKPGVASLFIEDLRQELIEILKTPNVELTGKMAMYGMSATLPDR 522
Query: 123 SIIGDFTRYYIDATYYTP 140
+I+GD TRY+IDA YYTP
Sbjct: 523 TIVGDITRYFIDAMYYTP 540
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307205249|gb|EFN83629.1| Sphingosine-1-phosphate lyase [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 114/141 (80%)
Query: 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNT 61
+YV +T+ II+T YIEK LR +DG+FIFG+P TSVIALGS+ F+IYRLS LN +GWN
Sbjct: 400 AYVESTKKIIDTTTYIEKRLRKLDGIFIFGSPVTSVIALGSNQFNIYRLSEALNFKGWNL 459
Query: 62 NSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPD 121
N+LQFP GIHICITH+HT+PGVA++F+ DV L I+++P ++EG +AMYG S +IPD
Sbjct: 460 NTLQFPCGIHICITHIHTEPGVAERFLQDVECALKEILKDPQSEVEGKLAMYGMSQNIPD 519
Query: 122 RSIIGDFTRYYIDATYYTPDS 142
R+++GDFTRY++D YYT D+
Sbjct: 520 RTVVGDFTRYFLDTMYYTGDN 540
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307181867|gb|EFN69307.1| Sphingosine-1-phosphate lyase [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 113/142 (79%)
Query: 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNT 61
+Y+ +T+ IIET +YIE+ LR MDG+F+FG PATSVIA+GS+ FHIYRLS L+ +GWN
Sbjct: 380 NYIESTKKIIETTRYIERNLREMDGIFVFGKPATSVIAIGSNEFHIYRLSEALSAKGWNL 439
Query: 62 NSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPD 121
N LQFP G+H+C+THMHTQ GVAD+F+ DV+ EL I++ +EG +AMYG S SIPD
Sbjct: 440 NPLQFPPGVHLCVTHMHTQSGVADQFLKDVKSELNTILETRTTLVEGKLAMYGMSQSIPD 499
Query: 122 RSIIGDFTRYYIDATYYTPDSK 143
RS++GDFTR ++D+ YYT +S+
Sbjct: 500 RSVVGDFTRCFLDSMYYTRESE 521
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157135111|ref|XP_001656538.1| sphingosine phosphate lyase [Aedes aegypti] gi|108881322|gb|EAT45547.1| AAEL003188-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 83/140 (59%), Positives = 114/140 (81%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T +YIE +LR +D +++FGTPATSV+A+GS F I+RLS+ LN GWN N
Sbjct: 398 YVEATKRIIDTARYIEAQLRKVDSIYVFGTPATSVVAIGSKDFDIFRLSAELNSLGWNLN 457
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
SLQFP GIHIC+T+MHTQ G+ADKF++DVR ++A++M+NP +EG MA+YG + ++PDR
Sbjct: 458 SLQFPSGIHICVTYMHTQDGIADKFVNDVRTKVALVMKNPEKPVEGKMAIYGVAQAVPDR 517
Query: 123 SIIGDFTRYYIDATYYTPDS 142
+IGDFT+ +ID+ YYTPDS
Sbjct: 518 EVIGDFTKCFIDSMYYTPDS 537
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66524811|ref|XP_623988.1| PREDICTED: sphingosine-1-phosphate lyase [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 114/141 (80%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ +T+ II+T +YIE+ LR + G+FIFGTPATSVIALGS+ FHIY+LS LN +GWN N
Sbjct: 401 YLESTKKIIKTTRYIEQRLRKLKGIFIFGTPATSVIALGSNDFHIYKLSEALNAKGWNLN 460
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQFP GIH+C+T++HTQ GVAD+F+SDV EL I++NP +EG A+YG S SIPDR
Sbjct: 461 TLQFPCGIHLCVTYVHTQSGVADQFLSDVETELEEILKNPETPVEGKFAIYGMSQSIPDR 520
Query: 123 SIIGDFTRYYIDATYYTPDSK 143
SI+GDF + ++D+ Y+TP+++
Sbjct: 521 SIVGDFAKCFLDSMYFTPENE 541
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 143 | ||||||
| FB|FBgn0010591 | 545 | Sply "Sphingosine-1-phosphate | 0.986 | 0.258 | 0.602 | 3.1e-44 | |
| ZFIN|ZDB-GENE-070410-24 | 572 | sgpl1 "sphingosine-1-phosphate | 0.958 | 0.239 | 0.518 | 4.9e-37 | |
| UNIPROTKB|F1NMD8 | 560 | ASCC1 "Uncharacterized protein | 0.958 | 0.244 | 0.481 | 6.1e-34 | |
| UNIPROTKB|O95470 | 568 | SGPL1 "Sphingosine-1-phosphate | 0.958 | 0.241 | 0.430 | 3.7e-29 | |
| UNIPROTKB|A5D788 | 568 | SGPL1 "Uncharacterized protein | 0.958 | 0.241 | 0.423 | 6.1e-29 | |
| MGI|MGI:1261415 | 568 | Sgpl1 "sphingosine phosphate l | 0.958 | 0.241 | 0.437 | 7.9e-29 | |
| UNIPROTKB|E2RME9 | 568 | SGPL1 "Uncharacterized protein | 0.958 | 0.241 | 0.423 | 1.3e-28 | |
| UNIPROTKB|F1SUB2 | 568 | SGPL1 "Uncharacterized protein | 0.958 | 0.241 | 0.416 | 2.2e-28 | |
| RGD|628599 | 568 | Sgpl1 "sphingosine-1-phosphate | 0.958 | 0.241 | 0.430 | 3.6e-28 | |
| UNIPROTKB|Q8CHN6 | 568 | Sgpl1 "Sphingosine-1-phosphate | 0.958 | 0.241 | 0.430 | 3.6e-28 |
| FB|FBgn0010591 Sply "Sphingosine-1-phosphate lyase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 85/141 (60%), Positives = 110/141 (78%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y+ T+ I++T +YIE+ +R +DG+FIFG PATSVIALGS+VF I+RLS L K GWN N
Sbjct: 405 YLEATKRIVDTARYIERGVRDIDGIFIFGKPATSVIALGSNVFDIFRLSDSLCKLGWNLN 464
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQFP GIH+C+T MHTQPGVADKFI+DVR A IM++PG + G MA+YG + SIPDR
Sbjct: 465 ALQFPSGIHLCVTDMHTQPGVADKFIADVRSCTAEIMKDPGQPVVGKMALYGMAQSIPDR 524
Query: 123 SIIGDFTRYYIDATYYTPDSK 143
S+IG+ TR ++ + YYTP K
Sbjct: 525 SVIGEVTRLFLHSMYYTPSQK 545
|
|
| ZFIN|ZDB-GENE-070410-24 sgpl1 "sphingosine-1-phosphate lyase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 71/137 (51%), Positives = 103/137 (75%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV TR ++ET + I+ +R +DG+F+FG P SV+ALGSD F I+RLS+ L +GWN N
Sbjct: 412 YVEATRKVVETTRKIKTGIRKIDGVFVFGDPEVSVVALGSDDFDIFRLSNALTSKGWNLN 471
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
+LQFP IHIC+T +HTQ GVA++FISDV++E+AIIM+NP + G+ A+YG + SIPDR
Sbjct: 472 TLQFPSSIHICVTMLHTQSGVAEQFISDVKKEVAIIMKNPKEKTTGMGAIYGMAQSIPDR 531
Query: 123 SIIGDFTRYYIDATYYT 139
S++ + ++ ++D Y T
Sbjct: 532 SMVTEVSQGFLDCLYST 548
|
|
| UNIPROTKB|F1NMD8 ASCC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 6.1e-34, P = 6.1e-34
Identities = 66/137 (48%), Positives = 96/137 (70%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T +++E ELR +D +FIFG P SV+++GSD F IYRLS+ L +GWN N
Sbjct: 408 YVEATKRIIKTARFLESELRKIDSIFIFGKPEVSVLSIGSDTFDIYRLSNLLAAKGWNLN 467
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH+CIT +HT+ GVA++F+ DV++ + IM N + G+ A+YG + SIPDR
Sbjct: 468 ILQFPPSIHLCITQLHTKSGVAEQFLKDVKDSIEDIMNNLNAKTTGMGAIYGMAQSIPDR 527
Query: 123 SIIGDFTRYYIDATYYT 139
S++ + + Y+D Y T
Sbjct: 528 SLVAEISLAYLDGLYST 544
|
|
| UNIPROTKB|O95470 SGPL1 "Sphingosine-1-phosphate lyase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 3.7e-29, P = 3.7e-29
Identities = 59/137 (43%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ G+F+FG P SVIALGS F IYRLS+ + +GWN N
Sbjct: 416 YVEATKQIIKTARFLKSELENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +H + VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 QLQFPPSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
+++ + + ++D+ Y T
Sbjct: 536 NMVAELSSVFLDSLYST 552
|
|
| UNIPROTKB|A5D788 SGPL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 6.1e-29, P = 6.1e-29
Identities = 58/137 (42%), Positives = 93/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ G+F+FG P SVIALGS F IYRL + +N +GWN N
Sbjct: 416 YVEATKQIIKTTRFLKSELENIKGIFVFGNPQLSVIALGSRDFDIYRLFNLMNAKGWNLN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP +H CIT +HT+ VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 QLQFPPSLHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQATIDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
+++ + + ++D+ + T
Sbjct: 536 NLVAELSSVFLDSLFST 552
|
|
| MGI|MGI:1261415 Sgpl1 "sphingosine phosphate lyase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 7.9e-29, P = 7.9e-29
Identities = 60/137 (43%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ +FIFG P SVIALGS+ F IYRLS+ ++ +GWN N
Sbjct: 416 YVEATKQIIKTARFLKSELENIKNIFIFGDPQLSVIALGSNDFDIYRLSNMMSAKGWNFN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +HT+ VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 YLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQATIDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
++ + + ++D Y T
Sbjct: 536 KLVAEISSVFLDCLYTT 552
|
|
| UNIPROTKB|E2RME9 SGPL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 1.3e-28, P = 1.3e-28
Identities = 58/137 (42%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ G+F+FG P SVIALGS F IYRL + + +GWN N
Sbjct: 416 YVEATKQIIKTTRFLKSELETIKGIFVFGNPQLSVIALGSRDFDIYRLFNLMTAKGWNLN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +HT+ VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 QLQFPPSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
+++ + + ++D+ + T
Sbjct: 536 NLVAELSSVFLDSLFST 552
|
|
| UNIPROTKB|F1SUB2 SGPL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 322 (118.4 bits), Expect = 2.2e-28, P = 2.2e-28
Identities = 57/137 (41%), Positives = 93/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ G+F+FG P SVIALGS F I+RL + + +GWN N
Sbjct: 416 YVEATKQIIKTTRFLKAELENIKGIFVFGNPQLSVIALGSRDFDIFRLFNLMTAKGWNLN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +HT+ VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 QLQFPPSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQATIDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
+++ + + +++D+ + T
Sbjct: 536 NLVAELSSFFLDSLFST 552
|
|
| RGD|628599 Sgpl1 "sphingosine-1-phosphate lyase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 3.6e-28, P = 3.6e-28
Identities = 59/137 (43%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ +FI G P SVIALGS+ F IYRLS+ ++ +GWN N
Sbjct: 416 YVEATKQIIKTARFLKSELENIKNIFILGDPQLSVIALGSNDFDIYRLSNMMSAKGWNFN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +HT+ VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 YLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQATIDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
++ + + ++D+ Y T
Sbjct: 536 KMVAEISSVFLDSLYST 552
|
|
| UNIPROTKB|Q8CHN6 Sgpl1 "Sphingosine-1-phosphate lyase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 3.6e-28, P = 3.6e-28
Identities = 59/137 (43%), Positives = 92/137 (67%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
YV T+ II+T ++++ EL ++ +FI G P SVIALGS+ F IYRLS+ ++ +GWN N
Sbjct: 416 YVEATKQIIKTARFLKSELENIKNIFILGDPQLSVIALGSNDFDIYRLSNMMSAKGWNFN 475
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
LQFP IH CIT +HT+ VA +F+ D+RE + IM+NP + G+ A+YG + + DR
Sbjct: 476 YLQFPRSIHFCITLVHTRKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQATIDR 535
Query: 123 SIIGDFTRYYIDATYYT 139
++ + + ++D+ Y T
Sbjct: 536 KMVAEISSVFLDSLYST 552
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9V7Y2 | SGPL_DROME | 4, ., 1, ., 2, ., 2, 7 | 0.6028 | 0.9860 | 0.2587 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 143 | |||
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 5e-12 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 0.001 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-12
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL---GSDVFH--IYRLSSGLNKR 57
Y I++ KY+ + +R+ G + G P S++ S Y LS LN+R
Sbjct: 246 YGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNER 305
Query: 58 G-WNTNSLQF--PVGIHICITHMHTQPGVADKFISDVRE 93
G W+ + P + +T+ T AD + D+
Sbjct: 306 GGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 10 IIETVKYIEKELRSMDGLFIFGTPATSVIA--LGSDVFHIYRLSSGLNKRGWNTNSLQFP 67
+E +Y+ +EL + + P ++A L D + LS L++RGW + P
Sbjct: 347 TLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQVPAQLLP 406
Query: 68 VGIHICITHMHTQPGVADKFISDVREELA 96
G+ I + H KFI
Sbjct: 407 KGLAI-VFGTHVTGRQGLKFIVANLLITD 434
|
Length = 460 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 143 | |||
| KOG1383|consensus | 491 | 100.0 | ||
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.62 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.46 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.43 | |
| PLN02263 | 470 | serine decarboxylase | 99.42 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.29 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.91 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 98.87 | |
| PLN02880 | 490 | tyrosine decarboxylase | 98.73 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 98.69 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 98.62 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 98.56 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 98.55 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 98.51 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 98.42 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 98.26 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 98.23 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 98.09 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 98.08 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 98.04 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 97.89 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 97.86 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 97.79 | |
| PLN02721 | 353 | threonine aldolase | 97.72 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 97.72 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 97.71 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 97.62 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 97.62 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 97.61 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 97.61 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 97.57 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 97.49 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 97.37 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 97.37 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 97.34 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 97.23 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 97.22 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 97.2 | |
| PLN02822 | 481 | serine palmitoyltransferase | 97.19 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 97.17 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 97.12 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 97.11 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 97.03 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 96.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 96.94 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 96.94 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 96.9 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 96.83 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 96.83 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 96.8 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 96.79 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 96.79 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 96.77 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 96.77 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 96.72 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 96.71 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 96.69 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 96.56 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 96.53 | |
| KOG0628|consensus | 511 | 96.52 | ||
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 96.51 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 96.5 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.47 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 96.44 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 96.37 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 96.35 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 96.35 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 96.34 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 96.29 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 96.24 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 96.23 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 96.19 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 96.11 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 96.06 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 95.99 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 95.99 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 95.91 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 95.9 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 95.82 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 95.81 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 95.73 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 95.7 | |
| KOG0629|consensus | 510 | 95.68 | ||
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 95.5 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 95.49 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 95.43 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 95.41 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 95.33 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 95.33 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 95.27 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 95.27 | |
| PLN02452 | 365 | phosphoserine transaminase | 95.25 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 95.2 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 95.13 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 95.13 | |
| KOG1359|consensus | 417 | 95.1 | ||
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 95.08 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 94.95 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 94.86 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 94.79 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 94.72 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 94.68 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 94.31 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 94.31 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 94.27 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 94.23 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 94.12 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 93.94 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 93.92 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 93.89 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 93.87 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 93.77 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 93.68 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 93.59 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 93.54 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 93.39 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 93.36 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 93.19 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 93.14 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 93.04 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 92.93 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 92.88 | |
| PLN02651 | 364 | cysteine desulfurase | 92.82 | |
| KOG1357|consensus | 519 | 92.57 | ||
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 92.46 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 92.23 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 92.04 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 91.9 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 91.78 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 91.72 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 91.65 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 91.64 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 91.5 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 91.48 | |
| PRK07682 | 378 | hypothetical protein; Validated | 91.45 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 91.36 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 91.34 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 91.32 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 91.17 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 90.94 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 90.82 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 90.68 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 90.56 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 90.38 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 90.08 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 90.06 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 90.06 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 89.98 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 89.84 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 89.78 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 89.63 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 89.6 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 89.23 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 89.17 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 89.05 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 88.93 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 88.92 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 88.88 | |
| KOG2467|consensus | 477 | 88.85 | ||
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 88.52 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 88.51 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 88.48 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 88.37 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 88.11 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 88.11 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 87.6 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 87.56 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 87.53 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 87.3 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 86.95 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 86.85 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 86.79 | |
| KOG2040|consensus | 1001 | 86.46 | ||
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 86.46 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 85.94 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 85.71 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 85.7 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 85.61 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 85.26 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 85.12 | |
| PF13991 | 73 | BssS: BssS protein family | 85.12 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 85.06 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 85.02 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 84.83 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 84.77 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 84.7 | |
| PRK12301 | 84 | bssS biofilm formation regulatory protein BssS; Re | 84.64 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 84.58 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 84.33 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 84.33 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 84.24 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 84.17 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 84.09 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 83.92 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 83.84 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 83.77 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 83.72 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 83.65 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 83.57 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 83.53 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 83.11 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 83.01 | |
| PRK07678 | 451 | aminotransferase; Validated | 82.78 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 82.54 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 82.35 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 82.26 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 81.84 | |
| PRK07324 | 373 | transaminase; Validated | 81.73 | |
| PRK08175 | 395 | aminotransferase; Validated | 81.43 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 81.4 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 81.26 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 81.2 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 80.95 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 80.77 | |
| COG3870 | 109 | Uncharacterized protein conserved in bacteria [Fun | 80.37 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 80.17 |
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=252.97 Aligned_cols=140 Identities=34% Similarity=0.692 Sum_probs=136.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
|||++.+++|+++++.|+++|+++++|.++|+|.+++++|.+..+|+|+++|.|+++||++|++|+|+++||||++.|++
T Consensus 350 eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~ 429 (491)
T KOG1383|consen 350 EGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAR 429 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccchhhhhHHHHhcCcCccccCCCCceEEEEEeeecc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCCChhhHHhhhccCCCcchHHHHHHHHHHhhcCCCC
Q psy10208 81 PGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDRSIIGDFTRYYIDATYYTPD 141 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~~~p~~~~~~~a~~Yg~~~~ipd~~~v~~~~~~~~d~~y~~~~ 141 (143)
++++++|+.|+++++++++.+|.....+++++||+++++|||++++|++.-|+|++|+ ++
T Consensus 430 ~~~A~~~v~Di~~~~~el~~~p~~~~~~~~a~yg~a~~~~~~~~~~e~~~~~~d~~y~-~~ 489 (491)
T KOG1383|consen 430 EDVADRFVADIRKVVEELKSLPESKTHGMAAIYGLAQKTPDRSVVDELIVGFLDSVYT-TT 489 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCcccchhhhhhcCCchhhHHHHHHHHHHhhhc-CC
Confidence 9999999999999999999999998888899999999999999999999999999999 54
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=126.63 Aligned_cols=97 Identities=20% Similarity=0.447 Sum_probs=88.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecC-----CCCHHHHHHHHhhcCceecCCCCCCe-----
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSD-----VFHIYRLSSGLNKRGWNTNSLQFPVG----- 69 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~-----~~~i~~l~d~L~~rGW~v~~~~~P~~----- 69 (143)
+||+++.+++++.++++.++|+++|+|+++++ |.+++|||+.+ +.|..+++++|+++||.++.++.|..
T Consensus 322 ~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~ 401 (431)
T TIGR01788 322 EGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIV 401 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeE
Confidence 59999999999999999999999999999997 89999999976 37889999999999999999999864
Q ss_pred -eeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 70 -IHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 70 -ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+|+++++ |++++++++|++||++++.++
T Consensus 402 ~lR~~~~~-~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 402 VMRIVVRE-GFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred EEEEEecC-CCCHHHHHHHHHHHHHHHHhh
Confidence 5888864 777899999999999999876
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-13 Score=114.12 Aligned_cols=83 Identities=12% Similarity=0.219 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+||++.+++++++|+++.++|++. |++++.+|..++|+|+++. .+.+. +||+|+..+ ..+|++||+ |++
T Consensus 291 ~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~------~~~~~-~~w~l~~~~--~~~hi~vm~-~~~ 359 (374)
T PLN03032 291 RGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPM------DEAFI-KKWQLACEG--DIAHVVVMP-NVT 359 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCC------cHhHh-heeeecccC--CEEEEEECC-CCC
Confidence 599999999999999999999997 9999999999999999874 22233 799999866 489999996 677
Q ss_pred hhHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREE 94 (143)
Q Consensus 81 ~~~~~~fl~Dl~~a 94 (143)
++++|+|++||++.
T Consensus 360 ~~~id~fi~dl~~~ 373 (374)
T PLN03032 360 VEKLDEFVEELVEV 373 (374)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999863
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-13 Score=110.68 Aligned_cols=84 Identities=13% Similarity=0.258 Sum_probs=73.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+||.++++++++.++++.++|++. |++++++|.+++|+|+++. +.+. +||+++..+ ..+|++||+ |++
T Consensus 288 ~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f~~~~-------~~~~-~~w~l~~~~--~~~hi~~~~-~~~ 355 (380)
T PRK02769 288 KGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVFPCPS-------ERIW-KKWHLATSG--NQAHIITMP-HHN 355 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEEcCCC-------HHHH-hCeeEcccC--CEEEEEECC-CCC
Confidence 599999999999999999999996 9999999999999998764 2232 899999887 489999997 666
Q ss_pred hhHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELA 96 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~ 96 (143)
++.+|+|++||++...
T Consensus 356 ~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 356 KQQIDSLIDELIFDLK 371 (380)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7888999999999865
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-13 Score=113.24 Aligned_cols=87 Identities=13% Similarity=0.211 Sum_probs=75.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+||++.+++++++|+++.++|+++ |++++++|..++|+|+++. +.+..|||+++..+. .+|++||+ |++
T Consensus 358 ~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~-------~~~~~~gW~L~~~~~--~~Hivvmp-hv~ 426 (470)
T PLN02263 358 RGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPK-------DEEFVRRWQLACQGN--IAHVVVMP-SVT 426 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCc-------hHHhhcceEEccCCC--cEEEEEcC-CCC
Confidence 599999999999999999999998 8999999999999998753 333569999998664 59999996 667
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELAII 98 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~ 98 (143)
++++|+|++||++.-...
T Consensus 427 ~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 427 IEKLDYFLKELVEKRSTW 444 (470)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 899999999999997643
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-12 Score=107.39 Aligned_cols=88 Identities=23% Similarity=0.422 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CC-HHHHHHHHhhcCceecCCCCCCeeeEEEEecc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FH-IYRLSSGLNKRGWNTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~-i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h 78 (143)
|||+++++++++++++|+++|++.+.|+++++|.+|+|||+.++ .+ .++..+.++++||+++.++.|.++++.++. |
T Consensus 338 eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~-~ 416 (460)
T COG0076 338 EGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGT-H 416 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcccchhchHHHHHhcCceeecccCCccceeeeee-E
Confidence 69999999999999999999999988999999999999999854 33 889999999999999999999988866553 5
Q ss_pred cChhHHHHHHH
Q psy10208 79 TQPGVADKFIS 89 (143)
Q Consensus 79 ~~~~~~~~fl~ 89 (143)
+.......|..
T Consensus 417 ~~~~~~~~~~~ 427 (460)
T COG0076 417 VTGRQGLKFIV 427 (460)
T ss_pred Eeeeeeehhhc
Confidence 54344444433
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-09 Score=90.13 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=83.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC--CC---H----HHHHHHHhhcCceecCCCC---CC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV--FH---I----YRLSSGLNKRGWNTNSLQF---PV 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~--~~---i----~~l~d~L~~rGW~v~~~~~---P~ 68 (143)
+||++.++++++.|+++.+.|++.|+|+++.+|.+++|||+..+ .+ . ..|.++|.+.|=.+-+++. -.
T Consensus 424 ~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~ 503 (539)
T PLN02590 424 ENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKF 503 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEE
Confidence 59999999999999999999999999999999999999999642 11 1 3667777778865555443 24
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.+|+||+.+.+++++++.+++.|.+...++-.+
T Consensus 504 ~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~ 536 (539)
T PLN02590 504 VLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRN 536 (539)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999987776654
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=82.90 Aligned_cols=94 Identities=24% Similarity=0.439 Sum_probs=80.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-----CCHHHHHHHHhhc-CceecCCCC--CCeeeE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-----FHIYRLSSGLNKR-GWNTNSLQF--PVGIHI 72 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-----~~i~~l~d~L~~r-GW~v~~~~~--P~~ihi 72 (143)
+||.++.+++.+.++++.++|+++++++++++|+.++|+|...+ .+-.++.++|.++ ||.++.... +..+|+
T Consensus 244 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRi 323 (345)
T cd06450 244 DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRF 323 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEE
Confidence 47899999999999999999999999999998999999998754 4567899999998 798876543 457899
Q ss_pred EEEecccChhHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
+++..+++.+.+++|++.|+++
T Consensus 324 s~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 324 VVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred EecCCCCCHHHHHHHHHHHHhC
Confidence 9997776789999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.73 E-value=9e-08 Score=82.90 Aligned_cols=100 Identities=11% Similarity=-0.010 Sum_probs=81.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC--CC---HH----HHHHHHhhcCceecCCC---CCC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV--FH---IY----RLSSGLNKRGWNTNSLQ---FPV 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~--~~---i~----~l~d~L~~rGW~v~~~~---~P~ 68 (143)
+||++.++++++.|+++++.|++.++|+++.+|++++|||+..+ .+ .. .+.++|.+.|-..-+.+ ...
T Consensus 376 ~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~ 455 (490)
T PLN02880 376 ENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKY 455 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEE
Confidence 58999999999999999999999999999999999999999642 12 12 35566666686555443 234
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+|++++.++++.++++.+++.|++..+++..
T Consensus 456 ~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~ 487 (490)
T PLN02880 456 VLRFAVGAPLTEERHVTAAWKVLQDEASKLLG 487 (490)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999998877644
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-07 Score=74.67 Aligned_cols=91 Identities=19% Similarity=0.396 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+||.+..+++.+.++++.++|+++ |++++..|..++|+|..+ +-.++.++|.++||.+.....|..+|+++++ +++
T Consensus 279 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~--~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~-~~t 354 (371)
T PRK13520 279 EGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDP--NPDEVREKLRERGWRVSVTRCPEALRIVCMP-HVT 354 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecC--CHHHHHHHHHHCCceeccCCCCCEEEEEEEC-CCC
Confidence 478889999999999999999998 999666788899999765 5678999999999999887767789999886 667
Q ss_pred hhHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREEL 95 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai 95 (143)
++.++.|++.|++++
T Consensus 355 ~edi~~~~~~l~~~~ 369 (371)
T PRK13520 355 REHIENFLEDLKEVK 369 (371)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999998764
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=81.39 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=71.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC-----------------C--HH----HHHHHHhhc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF-----------------H--IY----RLSSGLNKR 57 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~-----------------~--i~----~l~d~L~~r 57 (143)
+||.++.+++++.++++.+.|++.|+|+++++|.+++|||+..+- + +. .+.++|++.
T Consensus 396 ~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~ 475 (522)
T TIGR03799 396 KGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREA 475 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 599999999999999999999999999999999999999995321 1 12 556777777
Q ss_pred CceecCC-CC--------C-CeeeEEEEecccChhHHHHHHHHH
Q psy10208 58 GWNTNSL-QF--------P-VGIHICITHMHTQPGVADKFISDV 91 (143)
Q Consensus 58 GW~v~~~-~~--------P-~~ihi~v~~~h~~~~~~~~fl~Dl 91 (143)
|=.+-+. +. + ..+|+|++++.++.+.++..+++=
T Consensus 476 G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~ 519 (522)
T TIGR03799 476 GKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQ 519 (522)
T ss_pred CCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHh
Confidence 8544332 22 1 358999999999988888777653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.1e-07 Score=76.94 Aligned_cols=101 Identities=16% Similarity=0.275 Sum_probs=79.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cCceeEEEEec-----CCCCHHHHHHHHhhcCceecCCCCCC----ee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFG-TPATSVIALGS-----DVFHIYRLSSGLNKRGWNTNSLQFPV----GI 70 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p~l~vVaf~~-----~~~~i~~l~d~L~~rGW~v~~~~~P~----~i 70 (143)
+|++++++++++.+++++++|+++ +++.. .|.++.+.|+. ++.+..++.++|.++||++.....|. .+
T Consensus 345 ~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l 422 (481)
T PRK04366 345 EGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEAL 422 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeE
Confidence 589999999999999999999997 44433 35555566654 34688999999999999988555443 47
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHcCCCC
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQNPGL 104 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~ 104 (143)
+++++..+ +++.+|.|++.|+++.+++.++|..
T Consensus 423 ~is~~e~~-t~edid~l~~~l~~i~~~~~~~~~~ 455 (481)
T PRK04366 423 MIEPTETE-SKETLDAFIAAMKQIAEEAKENPEL 455 (481)
T ss_pred EEcccCCC-CHHHHHHHHHHHHHHHHHHHhCcHh
Confidence 77777634 4789999999999999999998743
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=98.55 E-value=9e-07 Score=72.45 Aligned_cols=89 Identities=21% Similarity=0.442 Sum_probs=75.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|+.++.+++.+.+++|+++|+++ |++.+.+|..++|+|..++ ..++.++|.++||.+.....|..+|++++. +.+
T Consensus 284 ~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~--~~~v~~~L~~~gi~v~~~~~~~~iRis~~~-~~t 359 (373)
T TIGR03812 284 EGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVDD--PEEVRKKLRDRGWYVSVTRCPKALRIVVMP-HVT 359 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeCC--HHHHHHHHHHCCceeccCCCCCEEEEEEEC-CCC
Confidence 377889999999999999999998 6766667888999998764 458999999999999877667789999986 566
Q ss_pred hhHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVRE 93 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ 93 (143)
++.++.|++.|++
T Consensus 360 ~edid~l~~~L~~ 372 (373)
T TIGR03812 360 REHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHHhh
Confidence 7899999998875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=71.14 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----------CCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----------PVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----------P~~i 70 (143)
|+.++.+++.+.++++.++|++++|+++++.|..++++|..++.+-.++.+.|.++|..+..... +..+
T Consensus 293 g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~i 372 (401)
T PRK10874 293 DINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTL 372 (401)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEE
Confidence 67778888899999999999999999999888888999987777778999999999999876442 3579
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+++...+ +++.++.|++-|+++++.+
T Consensus 373 RiS~~~~n-t~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 373 RASFAPYN-TQSDVDALVNAVDRALELL 399 (401)
T ss_pred EEEecccC-CHHHHHHHHHHHHHHHHHh
Confidence 99998644 6789999999999987754
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.8e-06 Score=68.71 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----------CCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----------PVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----------P~~i 70 (143)
|+.++.+++.+.++++.++|++++|+++.+.|..++++|..++.+-.++.+.|.++|+.+..... +..+
T Consensus 290 g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~i 369 (398)
T TIGR03392 290 DIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTL 369 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEE
Confidence 67788889999999999999999999999888888999987777778999999999999976432 4579
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+++.. ..+.+.++.|++-|+++++.+
T Consensus 370 RvS~~~-~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 370 RASFAP-YNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred EEEeec-cCCHHHHHHHHHHHHHHHHHh
Confidence 999986 456789999999999887654
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=65.35 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----------C
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----------F 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----------~ 66 (143)
|..++.+++.+.++++.++|++++|+++++.+ ..++++|..++.+-.++.+.|+++|+.+.... .
T Consensus 292 g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~ 371 (403)
T TIGR01979 292 GLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGV 371 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCC
Confidence 56778899999999999999999999998753 36789998776777889999999999886421 2
Q ss_pred CCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 67 PVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 67 P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+..+|+++.. ..+++.++.|++-|+++++.+
T Consensus 372 ~~~iRiS~~~-~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 372 PATCRASFYI-YNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred CCEEEEEecc-CCCHHHHHHHHHHHHHHHHHh
Confidence 5578998874 446789999999999887764
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-05 Score=65.60 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC------ceeEEEEecCCCCHHHHHHHHhhc-CceecCCC---------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP------ATSVIALGSDVFHIYRLSSGLNKR-GWNTNSLQ--------- 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------~l~vVaf~~~~~~i~~l~d~L~~r-GW~v~~~~--------- 65 (143)
|..++.+++.+.++++.++|++++|+++++++ ..++|+|..++.+..++.+.|.++ |..+....
T Consensus 306 g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~ 385 (424)
T PLN02855 306 GMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRY 385 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHH
Confidence 77788899999999999999999999999753 257999998777888999999887 99877532
Q ss_pred --CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 66 --FPVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 66 --~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.+..+|+++.. ..+.+.++.|++-|++++..++..
T Consensus 386 ~g~~~~iRiS~~~-ynt~~di~~l~~~l~~~~~~~~~~ 422 (424)
T PLN02855 386 LGVNASARASLYF-YNTKEEVDAFIHALKDTIAFFSSF 422 (424)
T ss_pred hCCCCeEEEEecc-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 24578998864 456799999999999999887653
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.1e-05 Score=62.73 Aligned_cols=88 Identities=13% Similarity=0.209 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----------CCC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----------FPV 68 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----------~P~ 68 (143)
|+.++.+++.+.++++.++|++++|++++.++ ..++++|..+..+-.++.+.|.++||.+.... .+.
T Consensus 272 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~ 351 (373)
T cd06453 272 GMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPG 351 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCC
Confidence 67788888999999999999999999998653 56789998777777899999999999886421 245
Q ss_pred eeeEEEEecccChhHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISD 90 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~D 90 (143)
.+|+++...+ +.+.+++|++-
T Consensus 352 ~iRis~~~~~-t~~di~~~~~~ 372 (373)
T cd06453 352 TVRASFGLYN-TEEEIDALVEA 372 (373)
T ss_pred eEEEEecCCC-CHHHHHHHHhh
Confidence 7999998544 46788888764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.9e-05 Score=63.69 Aligned_cols=94 Identities=15% Similarity=0.286 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----------C
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----------P 67 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----------P 67 (143)
|..++.+...+.+.++.++|+++|+++++|.+ ..++|+|..++.+-.+++..|.++|=.+.+... +
T Consensus 297 g~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~ 376 (405)
T COG0520 297 GMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVD 376 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCC
Confidence 67889999999999999999999999999986 699999999999999999999999933333222 2
Q ss_pred CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 68 VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 68 ~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
..+|+++..-+ +.+.+|.|++=|+++.+
T Consensus 377 ~~iR~S~~~YN-t~edid~l~~aL~~~~~ 404 (405)
T COG0520 377 ATIRASLHLYN-TEEDVDRLLEALKKALA 404 (405)
T ss_pred CceEEEEeecC-CHHHHHHHHHHHHHHhh
Confidence 23888887655 47899999998888754
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=61.19 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----------~P~~ 69 (143)
|+.++.+++.+.++++.++|++++|++++++ +..++|+|..++.+-.++...|.++|+.+..-. .|..
T Consensus 298 g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~ 377 (406)
T PRK09295 298 GLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAM 377 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCE
Confidence 7778888999999999999999999999985 347899998877777889999999999886432 2456
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+|+++.. ..+.+.+|.|++-|+++..
T Consensus 378 iRiS~~~-ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 378 CRASLAM-YNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred EEEEccC-CCCHHHHHHHHHHHHHHHH
Confidence 8998874 4567899999998887643
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=59.86 Aligned_cols=87 Identities=10% Similarity=0.176 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCC-----------C--
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSL-----------Q-- 65 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~-----------~-- 65 (143)
..++.+++.+.++++.++|+++++++++++ +..+++.|..++.+..++.++|.++|-.+... .
T Consensus 292 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~ 371 (397)
T TIGR01976 292 FQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLN 371 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCC
Confidence 456677788899999999999988999875 36889999877777889999999999888653 1
Q ss_pred -CCCeeeEEEEecccChhHHHHHHHH
Q psy10208 66 -FPVGIHICITHMHTQPGVADKFISD 90 (143)
Q Consensus 66 -~P~~ihi~v~~~h~~~~~~~~fl~D 90 (143)
....+|++++. +.+++.++.|++-
T Consensus 372 ~~~~~iRis~~~-~~t~~di~~l~~~ 396 (397)
T TIGR01976 372 DEGGVVRVGLAH-YNTAEEVDRLLEA 396 (397)
T ss_pred CCCCeEEEEeec-cCCHHHHHHHHHh
Confidence 12469999986 4456778888763
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0002 Score=60.61 Aligned_cols=93 Identities=13% Similarity=0.241 Sum_probs=70.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcC----ceecCCC--CCCeeeEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRG----WNTNSLQ--FPVGIHICI 74 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rG----W~v~~~~--~P~~ihi~v 74 (143)
+|+.++.+++.+.++++.++|++++|++++..+....+++..+ .+..++.++|.++| |.+...- .+..+|+++
T Consensus 348 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~-~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~ 426 (447)
T PRK00451 348 EGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLP-KPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCV 426 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecC-CCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEec
Confidence 3788999999999999999999999999985555555555532 36789999999984 4444321 235788888
Q ss_pred EecccChhHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+.. .+++.+++|++.|++.+
T Consensus 427 ~~~-~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 427 TEK-RTKEDIDALVAALGEVL 446 (447)
T ss_pred CCC-CCHHHHHHHHHHHHHHh
Confidence 753 45789999999998753
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=57.32 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc--C--ceeEEEEecCCCCHHHHHHHHhhc-CceecCC------------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT--P--ATSVIALGSDVFHIYRLSSGLNKR-GWNTNSL------------ 64 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p--~l~vVaf~~~~~~i~~l~d~L~~r-GW~v~~~------------ 64 (143)
|+.++.+++.+.++++.++|++++|++++++ | ..++++|..++++..++.+.|.++ |-.+..-
T Consensus 267 g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g 346 (376)
T TIGR01977 267 GIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIG 346 (376)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhC
Confidence 6778889999999999999999999999874 2 478999998878888999999987 6444321
Q ss_pred -CCCCeeeEEEEecccChhHHHHHHHHHHH
Q psy10208 65 -QFPVGIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 65 -~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
..+..+|++++. +.+.+.++.|++-|++
T Consensus 347 ~~~~~~iRis~~~-~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 347 TFATGTIRLSLGY-FNTEEEIEKLLEALSE 375 (376)
T ss_pred CCCCCeEEEecCC-CCCHHHHHHHHHHHhh
Confidence 134579999875 5667888888887764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00059 Score=55.24 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeE-eccCceeEEEEecCC---CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFI-FGTPATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~v-lg~p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
.++..+.++++.+.|++++|+++ +..|..+.+.|+... .+...+.++|.++|+.+... .+..+|+++.. ..+++
T Consensus 260 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~-~~~~lR~~~~~-~~~~~ 337 (353)
T PLN02721 260 LEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPG-NSSRIRVVTHH-QISDS 337 (353)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcEEecC-CCceEEEEecC-cCCHH
Confidence 34445678899999999999976 677777888887643 57789999999999998765 35678998864 44578
Q ss_pred HHHHHHHHHHHHHHH
Q psy10208 83 VADKFISDVREELAI 97 (143)
Q Consensus 83 ~~~~fl~Dl~~ai~~ 97 (143)
.+++|++-|++++..
T Consensus 338 ~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 338 DVQYTLSCFQQAALT 352 (353)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999887653
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00037 Score=56.76 Aligned_cols=92 Identities=14% Similarity=0.060 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--eeEEE-EecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--TSVIA-LGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~vVa-f~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~ 73 (143)
|+.++.+++.+.++++.++|+++ |++++++|. .+.++ +..+ ..+..++++.|.++ |+.+.... .|..+|++
T Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis 334 (356)
T cd06451 256 GLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIG 334 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEe
Confidence 67788899999999999999998 899987542 44443 4443 56888999999998 99886532 34578999
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
++. +.+++.+++|++=|++++
T Consensus 335 ~~~-~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 335 HMG-EATREDVLGVLSALEEAL 355 (356)
T ss_pred cCC-CCCHHHHHHHHHHHHHHh
Confidence 886 455789999999888865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00019 Score=59.37 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC---CCCHHHHHHHHhhcCceecCCC--CCCeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD---VFHIYRLSSGLNKRGWNTNSLQ--FPVGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~--~P~~ihi~v~ 75 (143)
+|+.++.+++.+.++++.++|+++++......+..++|+|..+ +.+..+++++|.++|+.+.... .+..+|++..
T Consensus 304 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~ 383 (398)
T cd00613 304 EGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPT 383 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcC
Confidence 3778889999999999999999997665444566677777765 3456789999999999887642 4567899886
Q ss_pred ecccChhHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISD 90 (143)
Q Consensus 76 ~~h~~~~~~~~fl~D 90 (143)
. ..+++.+|+|++-
T Consensus 384 ~-~~t~edid~~~~~ 397 (398)
T cd00613 384 E-TETKEELDALLEA 397 (398)
T ss_pred C-CCCHHHHHHHHHh
Confidence 5 4456788888764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00072 Score=57.30 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---------CCCeee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---------FPVGIH 71 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---------~P~~ih 71 (143)
.+..+++.+++++|+++|+++ ||.++. ++.+-.|.|.+...+...+.++|++.|..++..+ .|..+|
T Consensus 285 ~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR 363 (416)
T PRK13034 285 KTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIR 363 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeE
Confidence 345688999999999999998 999875 2334445566667788899999999999887632 244688
Q ss_pred EEEEe----cccChhHHHHHHHHHHHHHH
Q psy10208 72 ICITH----MHTQPGVADKFISDVREELA 96 (143)
Q Consensus 72 i~v~~----~h~~~~~~~~fl~Dl~~ai~ 96 (143)
++++. .| +++.++++++-|++++.
T Consensus 364 ~~~~~~t~~~~-~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 364 IGTPAGTTRGF-GEAEFREIANWILDVLD 391 (416)
T ss_pred eCcHHHHhCCC-CHHHHHHHHHHHHHHHh
Confidence 87664 23 35788888888888866
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00095 Score=55.17 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ce-eEEEEecCCCCHHHHHHHHhhcCceecCCC-C-------------
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP--AT-SVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F------------- 66 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l-~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~------------- 66 (143)
.++.+++...++++.++|++++|+++++++ .. ++++|..++.+-.++...|.++|-.+..-. |
T Consensus 258 ~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~ 337 (382)
T TIGR03403 258 DFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVA 337 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHH
Confidence 344456677888999999999999999864 33 477888777788888989999998887411 0
Q ss_pred --------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 67 --------PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 67 --------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
...+|++++. .++.+.+|.|++-|+++++.++.
T Consensus 338 ~g~~~~~~~~~iR~s~~~-~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 338 IGADKELAHTAIRLSLSR-FTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred cCCChHHhCeeEEEECCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 1468999986 55678999999999999888775
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=55.34 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCC--------CCCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSL--------QFPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~--------~~P~~i 70 (143)
|+.++.+++.+++++|.++|++. |+++++. +...+|.|...+.+-..+...|+++|..++.. ..|+++
T Consensus 300 ~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~v 378 (452)
T PTZ00094 300 EWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGV 378 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeE
Confidence 67788899999999999999986 9999852 34567778877888889999999999998743 235678
Q ss_pred eEEEEeccc---ChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHT---QPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h~---~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+......+ +++.++.+++-|++++...
T Consensus 379 Ris~~~~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 379 RLGTPALTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred EECCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 888743221 2688999999888888764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=54.34 Aligned_cols=92 Identities=8% Similarity=0.119 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ceeE-EEEecCC---CCHHHHHHHHhhcCceecCCCC--CCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATSV-IALGSDV---FHIYRLSSGLNKRGWNTNSLQF--PVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~v-Vaf~~~~---~~i~~l~d~L~~rGW~v~~~~~--P~~ihi~ 73 (143)
|+.++.+++.+.+.++.++|+++ |++++.++ ..|+ ++|..++ ++..++.+.|+++|..+..... +..+|++
T Consensus 261 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~ 339 (363)
T TIGR02326 261 GVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIG 339 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEe
Confidence 57888899999999999999998 88887654 4454 4566543 6778899999999999866543 4578998
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
.+. +.+.+.++.|++-|++++
T Consensus 340 ~~~-~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 340 NIG-EVDAADITRLLTAIGKAM 360 (363)
T ss_pred cCC-CCCHHHHHHHHHHHHHHh
Confidence 764 456789999999888765
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0011 Score=55.59 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhC----CCeeEeccC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSM----DGLFIFGTP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i----~g~~vlg~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~ 73 (143)
|..++.+++.+.++++.++++++ +|+++++.. ..++|+|..+ .+..++...|.++|=.+. ...+..+|++
T Consensus 306 g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~~~~~~~~L~~~gi~v~-~~~~~~iRiS 383 (406)
T TIGR01814 306 GMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VPGKAVFQALIKRGVIGD-KREPSVIRVA 383 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CCHHHHHHHHHHCCEEEe-ccCCCeEEEe
Confidence 56778888999999999999886 469998752 2468899877 677899999999987654 3335679998
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+++.+.+.+.++.|++-|++++
T Consensus 384 ~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 384 PVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred chhccCCHHHHHHHHHHHHHHh
Confidence 8755667899999999888764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0019 Score=53.17 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCeeEeccCc--ee-EEEEecCCCCHHHHHHHHhhcCceecCCC--------------
Q psy10208 4 VNTTRSIIETVKYIEKELRS-MDGLFIFGTPA--TS-VIALGSDVFHIYRLSSGLNKRGWNTNSLQ-------------- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~--l~-vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-------------- 65 (143)
.++.+++.+.++++.++|++ ++++++.+++. .| +++|..+..+-.++...|.++|=.+..-.
T Consensus 254 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~ 333 (379)
T TIGR03402 254 EEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLR 333 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHH
Confidence 44556777788899999986 99999998642 33 77777666778899999999997765421
Q ss_pred --------CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 66 --------FPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 66 --------~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+.++|+++.. .++++.++.|++-|+++++.++.
T Consensus 334 ~lg~~~~~~~~~vR~S~~~-~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 334 AMGVPHTAAHGSIRFSLSR-YNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HcCCChhhcCceEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 13579999975 45679999999999999887765
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0024 Score=51.52 Aligned_cols=90 Identities=9% Similarity=0.155 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--ee-EEEEecCC---CCHHHHHHHHhhcCceecCCCC--CCeeeEEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--TS-VIALGSDV---FHIYRLSSGLNKRGWNTNSLQF--PVGIHICI 74 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~-vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~--P~~ihi~v 74 (143)
+.+..++..+.++++.+.|+++ |++++.++. .+ +++|..++ .+..++.++|.++|..+..... ...+|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~ 335 (355)
T TIGR03301 257 VPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGT 335 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEec
Confidence 6777888889999999999998 888776542 33 45666543 5667899999999999866432 35788887
Q ss_pred EecccChhHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREE 94 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~a 94 (143)
+. +.+.+.++.|++-|+++
T Consensus 336 ~~-~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 336 IG-EIDAADIERLLEAIKDA 354 (355)
T ss_pred CC-CCCHHHHHHHHHHHHhh
Confidence 64 45678999999988765
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.003 Score=51.77 Aligned_cols=95 Identities=7% Similarity=0.150 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--ee-EEEEecC---CCCHHHHHHHHhhcCceecCCCC--CCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--TS-VIALGSD---VFHIYRLSSGLNKRGWNTNSLQF--PVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~-vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~~--P~~ihi~ 73 (143)
|+.++.+++.+.++++.++|+++ |++++.++. .| +++|... .+|..++.++|.++|..+..... +..+|++
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis 340 (368)
T PRK13479 262 GVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIG 340 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEe
Confidence 46777889999999999999998 898876542 23 4667653 25778899999999999965432 3478887
Q ss_pred EEecccChhHHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+. +.+++.++.|++-|+++++.+
T Consensus 341 ~~~-~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 341 CIG-DVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred cCC-CCCHHHHHHHHHHHHHHHHHc
Confidence 654 445789999999999887654
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0029 Score=52.59 Aligned_cols=94 Identities=9% Similarity=-0.043 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc------CceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT------PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~------p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi 72 (143)
|...+.++....++++.++++++++++++.. +..++|+|. +++|..++.+.|+++|-.+.... .+..+|+
T Consensus 258 g~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~-~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRi 336 (361)
T TIGR01366 258 GLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV-DDIDAATVAKILRANGIVDTEPYRKLGRNQLRV 336 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC-CccCHHHHHHHHHHCCCeeccCccccCCCcEEE
Confidence 5777788899999999999999987887642 234678884 77899999999999997764431 1346899
Q ss_pred EEEecccChhHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.++. +++.+.++.|++-|+++++.
T Consensus 337 s~~~-~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 337 AMFP-AIDPDDVEALTECVDWVVER 360 (361)
T ss_pred EcCC-CCCHHHHHHHHHHHHHHHhh
Confidence 9986 66789999999999987664
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0036 Score=54.28 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
|+.++.+++.+++++|+++|++. ||++++. ..+.+|.|+..+++-.++...|.+.|..++.-. .|+++
T Consensus 311 ~~~~~~~~~~~na~~L~~~L~~~-G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~gi 389 (475)
T PLN03226 311 EFKAYQKQVKANAAALANRLMSK-GYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGV 389 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCc
Confidence 67888999999999999999995 9999963 467777777777787789999999998887643 47788
Q ss_pred eE----EEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 71 HI----CITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi----~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+ ..++.+. ++.++++.+=|.++++..
T Consensus 390 RiGt~~lt~~g~~-~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 390 RIGTPAMTSRGLV-EKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred ccCcHHHHHCCCC-HHHHHHHHHHHHHHHHHh
Confidence 88 4444443 466777777777777654
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0051 Score=51.68 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhhC--C-------CeeEeccCceeEEEEecCCC----------CHHHHHHHHhhcCceecC--
Q psy10208 5 NTTRSIIETVKYIEKELRSM--D-------GLFIFGTPATSVIALGSDVF----------HIYRLSSGLNKRGWNTNS-- 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i--~-------g~~vlg~p~l~vVaf~~~~~----------~i~~l~d~L~~rGW~v~~-- 63 (143)
+..+++.+.+++++++|++. + ++.+.+++..|++++...+. -...+.+.|.++|+.+..
T Consensus 262 ~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~ 341 (392)
T PLN03227 262 QLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTG 341 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecc
Confidence 45667788899999999863 1 22233445667777764321 125888999999998843
Q ss_pred -------CCCC-CeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 64 -------LQFP-VGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 64 -------~~~P-~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+..| ..+|++++..|+ ++.++++++-|+++++.+.
T Consensus 342 ~~~~~~~~~~P~~~iR~~~~~~~t-~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 342 GHVKKFLQLVPPPCLRVVANASHT-REDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred cccCCcCCCCCCceEEEEecCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 1234 467999998776 6899999999999987763
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.006 Score=50.88 Aligned_cols=97 Identities=7% Similarity=-0.016 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-C---ceeEEEEecCC----CCHHHHHHHHhhcCceecCCC---CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-P---ATSVIALGSDV----FHIYRLSSGLNKRGWNTNSLQ---FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p---~l~vVaf~~~~----~~i~~l~d~L~~rGW~v~~~~---~P~~i 70 (143)
|..++.++....++++.+++++++++++++. | ..++++|..++ .+ .++...|.++|..+..-. .+..+
T Consensus 269 G~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~-~~~~~~l~~~~i~v~~g~~~~~~~~v 347 (378)
T PRK03080 269 GLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVD-AAAVAKLLRENGAVDIEPYRDAPNGL 347 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHH-HHHHHHHHHcCCeeccccccCCCCcE
Confidence 6778888899999999999999988888752 3 23589998654 33 345666766777665422 24679
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
|++++. ..+.+.++.|++-|+++++.++.
T Consensus 348 Ris~~~-~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 348 RIWCGP-TVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred EEecCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 999774 66789999999999998887764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.005 Score=53.28 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC------C---HHHHHHHHh-hcCceecCCC--------
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF------H---IYRLSSGLN-KRGWNTNSLQ-------- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~------~---i~~l~d~L~-~rGW~v~~~~-------- 65 (143)
.+..+++.+.++++.++|++++|+.+...+..|++-+..++. + ..+++++|- ++|..+....
T Consensus 367 ~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~ 446 (481)
T PLN02822 367 PSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCR 446 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCC
Confidence 456778889999999999999899887666677766544321 2 357899985 8898887432
Q ss_pred CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 66 FPVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 66 ~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.|+.+|++++..|+ .+.++++++-|++++..+-
T Consensus 447 ~~~~lRi~is~~~t-~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 447 LPVGIRLFVSAGHT-ESDILKASESLKRVAASVL 479 (481)
T ss_pred CCCcEEEEECCCCC-HHHHHHHHHHHHHHHHHHh
Confidence 14579999998775 6899999999998887654
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0045 Score=51.03 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEe--cc--Ccee-EEEEecCCCCHHHHHHHHhhcCceecCCC-------C-----
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIF--GT--PATS-VIALGSDVFHIYRLSSGLNKRGWNTNSLQ-------F----- 66 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vl--g~--p~l~-vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-------~----- 66 (143)
.++.+++.+.++++.++|+++ |+++. ++ +.+| +++|..+.++-.++...|.++|-.+.... .
T Consensus 256 ~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~ 334 (381)
T PRK02948 256 QEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTM 334 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHH
Confidence 456678888999999999998 55544 22 2344 77888777777888889999999887422 0
Q ss_pred ----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 67 ----------PVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 67 ----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
...+|++++.- .+++.++.|++-|+++++.+-
T Consensus 335 ~~~~~~~~~~~~~lRis~~~~-~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 335 LAIGKTYEEAKQFVRFSFGQQ-TTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred HHcCCChHHhCceEEEEcCCC-CCHHHHHHHHHHHHHHHHHHh
Confidence 24699998864 457899999999998876543
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0087 Score=49.68 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cC--ce-eEEEEecCCCCH-HHHHHHHhhcCceecCCC-CCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG-TP--AT-SVIALGSDVFHI-YRLSSGLNKRGWNTNSLQ-FPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p--~l-~vVaf~~~~~~i-~~l~d~L~~rGW~v~~~~-~P~~ihi~v~ 75 (143)
|..++.++..+.++++.++|++++||+... +| .. +|++|..++..+ .++-..+.++|-...... .+..+|+++.
T Consensus 248 G~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~ 327 (349)
T TIGR01364 248 GVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRSVGGMRASIY 327 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCccccCeeEEECc
Confidence 688999999999999999999999887764 23 23 679998764322 455567778997555544 3567999997
Q ss_pred ecccChhHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai 95 (143)
. ..+.+.++.|++-|++..
T Consensus 328 ~-~nt~edid~l~~al~~~~ 346 (349)
T TIGR01364 328 N-AMPLEGVQALVDFMKEFQ 346 (349)
T ss_pred C-CCCHHHHHHHHHHHHHHH
Confidence 5 556789999999888753
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0054 Score=51.21 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecC--CCCCC--eeeEEEEecc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNS--LQFPV--GIHICITHMH 78 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~--~~~P~--~ihi~v~~~h 78 (143)
|+.....--+.|++|++++++.+|+++..+|+.|.|=+..+. ...+.++..||.... .-.+. -+|++.. .-
T Consensus 250 ~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~----~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts-~a 324 (342)
T COG2008 250 WRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPE----SAIEALRLAGALFYRGVLIGAHGEIVRFVTS-WA 324 (342)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECCh----HHHHHHHhhchhheeeeeccCCCceEEEEee-cc
Confidence 444444444459999999999999999999999998776654 223889999998887 33443 4888655 56
Q ss_pred cChhHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREEL 95 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai 95 (143)
++++.+++|+..+++.+
T Consensus 325 ~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 325 TSEEDVDELVAAIKALL 341 (342)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 77899999999998764
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.011 Score=48.86 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEec--cCceeEEEEecCCC---------CHHHHHHHHhhcCceecCCCCCCeeeEEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFG--TPATSVIALGSDVF---------HIYRLSSGLNKRGWNTNSLQFPVGIHICIT 75 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg--~p~l~vVaf~~~~~---------~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~ 75 (143)
.++..+.+++++++|+++ ||++++ ++..++|.|..+.. +...+.+.|.++|-.......+..+|++++
T Consensus 270 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~~~~iRis~~ 348 (370)
T TIGR02539 270 WDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQTKYFKLSVY 348 (370)
T ss_pred HHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCcceEEEEEec
Confidence 345567788999999998 899864 45778887765432 224689999999975222223446888885
Q ss_pred ecccChhHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.| +++.++++++-|++..++
T Consensus 349 -~~-t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 349 -GL-TKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred -CC-CHHHHHHHHHHHHHHHHh
Confidence 45 578999999999887654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=55.51 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=73.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecC------CCCHHHHHHHHhhcCceecCCCCCC--
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSD------VFHIYRLSSGLNKRGWNTNSLQFPV-- 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~------~~~i~~l~d~L~~rGW~v~~~~~P~-- 68 (143)
+|++++++..+.+|+||+++|++ +++++.+ +...=++|+.+ +.+.-+++.+|.++|.+-+....|.
T Consensus 762 ~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g 839 (939)
T TIGR00461 762 EGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPG 839 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCC
Confidence 58999999999999999999987 6788765 33444666554 3678899999999999988866553
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+=+++|-. .+.+.+|+|++-|.++-+++++
T Consensus 840 ~lmiepTE~-eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 840 TLMVEPTES-ESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred eEEEEeecc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 333445542 2468899999988877777765
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0079 Score=52.20 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhcCceecCCCC---C---CeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQF---P---VGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~---P---~~ihi~v~~ 76 (143)
.+..+++.+.++++.++|+++ |+.+.++...|++.+.. ...+..+++++|.++|-.+..... | ..+|+++..
T Consensus 368 ~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa 446 (489)
T PLN02483 368 AQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISA 446 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCC
Confidence 345667888999999999998 88888765445555432 223566899999999977754322 2 357999987
Q ss_pred cccChhHHHHHHHHHHHHHHHHHc
Q psy10208 77 MHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.|+ .+.+++.++-|+++.+.+.-
T Consensus 447 ~~t-~edId~~l~~L~~~~~~~~~ 469 (489)
T PLN02483 447 SHS-REDLIKALEVISEVGDLVGI 469 (489)
T ss_pred CCC-HHHHHHHHHHHHHHHHHhCc
Confidence 665 68899999999988876653
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.007 Score=52.92 Aligned_cols=96 Identities=11% Similarity=0.152 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cCceeEEEEecC--CCCHHHHHHHHhhcCceecCCCC---------CCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG-TPATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQF---------PVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~~---------P~~ 69 (143)
+|++.++++++++++|+++|.+. ||.+++ ..+.++|.+... ..+...+++.|.+.|..++.-.. +..
T Consensus 336 ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~sr 414 (493)
T PRK13580 336 EFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSG 414 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCce
Confidence 46778999999999999999998 999873 223344444333 33445788899999999986432 345
Q ss_pred eeEEEEeccc---ChhHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHT---QPGVADKFISDVREELAII 98 (143)
Q Consensus 70 ihi~v~~~h~---~~~~~~~fl~Dl~~ai~~~ 98 (143)
+||.++..|+ +.+.++.+++-|.++++..
T Consensus 415 LRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 415 IRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred EEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 8998876444 3567777777777776644
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.014 Score=54.82 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=74.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc--Cc--eeEEEEec----CCCCHHHHHHHHhhcCceecCCCCC--Cee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT--PA--TSVIALGS----DVFHIYRLSSGLNKRGWNTNSLQFP--VGI 70 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~--l~vVaf~~----~~~~i~~l~d~L~~rGW~v~~~~~P--~~i 70 (143)
+|.+++++.++.+|.|++++|++..++...+. |. -.++.++. .+.+..+++++|.++|.+.+....| ..+
T Consensus 802 ~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~l 881 (993)
T PLN02414 802 EGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTL 881 (993)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEE
Confidence 58899999999999999999988444444333 31 23455541 1377889999999999988876544 467
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+++.+-... .+.+|+|++-|+.+.+++++
T Consensus 882 miepTE~~s-keelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 882 MIEPTESES-KAELDRFCDALISIREEIAD 910 (993)
T ss_pred EEEeeeeCC-HHHHHHHHHHHHHHHHHHHH
Confidence 777776544 68899999999998888876
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.022 Score=46.73 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCC---------CHHHHHHHHhhcCceecCCCCCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVF---------HIYRLSSGLNKRGWNTNSLQFPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~---------~i~~l~d~L~~rGW~v~~~~~P~~ihi~v 74 (143)
..++..+.+++++++|++++|++++++ ...|++.|....+ +-+++.+.|.++|-..........+|+++
T Consensus 262 ~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~ 341 (361)
T cd06452 262 RWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLST 341 (361)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEe
Confidence 344445677899999999999999853 4567787776432 12358899999997753222223456655
Q ss_pred EecccChhHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREE 94 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~a 94 (143)
+ .+ +++..+.|++-|+++
T Consensus 342 ~-g~-~~e~~~~l~~al~~~ 359 (361)
T cd06452 342 Y-GL-TWEQVEYVVDAFKEI 359 (361)
T ss_pred c-CC-CHHHHHHHHHHHHHH
Confidence 3 34 467888888887765
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=49.31 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCC------CCCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQ------FPVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~------~P~~ihi~v~~~ 77 (143)
+..+++.+.++++.++|+++ |+++.+. .+++.+.... .+...+.+.|.++|..++... .+..+||++...
T Consensus 303 ~~~~~l~~~~~~l~~~L~~~-g~~v~~~--~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~ 379 (407)
T PRK07179 303 DRRARLHANARFLREGLSEL-GYNIRSE--SQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNAD 379 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCCC--CCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCC
Confidence 45677888899999999998 8887743 3567665432 245678899999998744321 134689999865
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+ .+.++++++-|++++++.
T Consensus 380 ~t-~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 380 LT-ASDLDRVLEVCREARDEV 399 (407)
T ss_pred CC-HHHHHHHHHHHHHHHHhh
Confidence 54 688999999888876653
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0095 Score=49.02 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F---------- 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~---------- 66 (143)
|..++.+++.+.++++.++|++++++++++. ...++++|..++.+..++...|+++|=.+.... +
T Consensus 272 g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~ 351 (371)
T PF00266_consen 272 GIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGM 351 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHT
T ss_pred ccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCC
Confidence 5677888999999999999999999999882 246889998888999999999999998877622 2
Q ss_pred CCeeeEEEEecccChhHHHHH
Q psy10208 67 PVGIHICITHMHTQPGVADKF 87 (143)
Q Consensus 67 P~~ihi~v~~~h~~~~~~~~f 87 (143)
..++|+++.. ..+.+.+++|
T Consensus 352 ~~~iRvS~~~-~nt~~dv~~l 371 (371)
T PF00266_consen 352 GGVIRVSLHY-YNTEEDVDRL 371 (371)
T ss_dssp TTEEEEE-GT-TSSHHHHHHH
T ss_pred CCEEEEeccC-CCCHHHHhhC
Confidence 2689999754 4456666665
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=48.46 Aligned_cols=93 Identities=9% Similarity=-0.070 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ce-eEEEEecCCC-CHHHHHHHHhhcCceecCCCC-CCeeeEEEEe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP--AT-SVIALGSDVF-HIYRLSSGLNKRGWNTNSLQF-PVGIHICITH 76 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l-~vVaf~~~~~-~i~~l~d~L~~rGW~v~~~~~-P~~ihi~v~~ 76 (143)
|..++.++..+.++++.++|++++.+..+.+| .. ++++|..++. +..++-+.+.++|-+...... +..+|+++..
T Consensus 259 G~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~ 338 (360)
T PRK05355 259 GVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYN 338 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCC
Confidence 68899999999999999999999744444432 23 5799987653 334555677889988755543 5679999975
Q ss_pred cccChhHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREEL 95 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai 95 (143)
..+.+.++.|++-|++..
T Consensus 339 -~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 339 -AMPLEGVQALVDFMKEFE 356 (360)
T ss_pred -CCCHHHHHHHHHHHHHHH
Confidence 555789999999888854
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.027 Score=45.78 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCC---CeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFP---VGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P---~~ihi~v~~~h~ 79 (143)
+.+..+++.+.++.+.+.|+++ |+.+. .+..+.+.+..++.+..++++.|.++|+.+.....| ..+|+++.
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---- 335 (353)
T PRK05387 262 FEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---- 335 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC----
Confidence 4566777888899999999998 78754 445566666666678889999999999998654333 45788775
Q ss_pred ChhHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREEL 95 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai 95 (143)
+.+.++.+++-|++++
T Consensus 336 ~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 336 TDEEMEALVDALKEIL 351 (353)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 2467888888888764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=55.22 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|-+++++++...+.+++++|++ .|+++..++....|.|+.. .+..++.++|.++|.++... .+..++++++--+ +
T Consensus 350 ~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~-~~~~~i~~~l~~~gi~~~~~-~~~~l~is~~e~~-t 425 (954)
T PRK05367 350 EGLKAIARRVHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVG-GDAAAVLARALAAGINLRRV-DDDHVGISLDETT-T 425 (954)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCC-CCHHHHHHHHHHCCceeccc-cCCEEEEEecccC-C
Confidence 47889999999999999999988 5999988877788888764 37889999999999998543 2557899998644 4
Q ss_pred hhHHHHHHHHHH
Q psy10208 81 PGVADKFISDVR 92 (143)
Q Consensus 81 ~~~~~~fl~Dl~ 92 (143)
++.++.|++-+.
T Consensus 426 ~~did~l~~~l~ 437 (954)
T PRK05367 426 REDLAALLAVFG 437 (954)
T ss_pred HHHHHHHHHHHc
Confidence 678888888776
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=54.66 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|-++++++++..|.+|+++|++ .|++++.+|-+..|.++....+..++.+++.++|.++... ....+.++++-.++
T Consensus 338 ~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~~-~~~~i~~s~~E~~t- 414 (939)
T TIGR00461 338 KGLKNIARRIHSLTSILANGLEN-DPHELINKTWFDTLTVKVGNGISSELLKAAEEFNINLRAV-DTTTVGIALDETTT- 414 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCccceEEEEeCCCCHHHHHHHHHHCCCeeeec-CCCEEEEEeecCCC-
Confidence 47899999999999999999999 5999998876667766654346788999999999997752 23468899998665
Q ss_pred hhHHHHHHHHHH
Q psy10208 81 PGVADKFISDVR 92 (143)
Q Consensus 81 ~~~~~~fl~Dl~ 92 (143)
++.++.|++-+.
T Consensus 415 ~~di~~l~~~~~ 426 (939)
T TIGR00461 415 KADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHHhc
Confidence 566777776663
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=48.91 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHh-hcCceecCCCCC------CeeeEEEEecc
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLN-KRGWNTNSLQFP------VGIHICITHMH 78 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~-~rGW~v~~~~~P------~~ihi~v~~~h 78 (143)
.+++.+.++++.++|+++ |+++++ +..+++.|.... .+..+++++|. ++|+.+.....| ..+|+++...|
T Consensus 302 ~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~ 379 (407)
T PRK09064 302 RERHQERAAKLKAALDAA-GIPVMP-NESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFH 379 (407)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCC
Confidence 466788999999999997 788765 445666665432 34567888886 569998764433 34788887555
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAII 98 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+ .+.++.|++-|++++..+
T Consensus 380 t-~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 380 T-DEMIDHLVEALVEVWARL 398 (407)
T ss_pred C-HHHHHHHHHHHHHHHHHc
Confidence 4 689999999999887654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=54.89 Aligned_cols=87 Identities=10% Similarity=0.138 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
.|-+++++++...+.+++++|++. |+++.++|....|+|+.+ +-.++.++|.++|-.+.... ...++++++..++
T Consensus 378 ~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~~~~~f~~vt~~~~--~~~~v~~~L~~~gI~l~~~~-~~~lrvs~~e~~T- 452 (993)
T PLN02414 378 EGLKTIAQRVHGLAGVFAAGLKKL-GFQVQSLPFFDTVKVKCS--DADAIADAAAKVGINLRVVD-ANTVTVSFDETTT- 452 (993)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc-CCccCCCCCcCeEEEecC--CHHHHHHHHHHCCCeeEEec-CCeEEEEeeccCC-
Confidence 377899999999999999999885 899998887889999875 35789999999999877654 3468999987554
Q ss_pred hhHHHHHHHHHH
Q psy10208 81 PGVADKFISDVR 92 (143)
Q Consensus 81 ~~~~~~fl~Dl~ 92 (143)
++.++.|++-|.
T Consensus 453 ~edId~L~~~l~ 464 (993)
T PLN02414 453 LEDVDKLFKVFA 464 (993)
T ss_pred HHHHHHHHHHHc
Confidence 677888887665
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.024 Score=46.88 Aligned_cols=92 Identities=7% Similarity=-0.029 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCee-EeccC--ce-eEEEEecCCCCH-HHHHHHHhhcCceecCCCC-CCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLF-IFGTP--AT-SVIALGSDVFHI-YRLSSGLNKRGWNTNSLQF-PVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~-vlg~p--~l-~vVaf~~~~~~i-~~l~d~L~~rGW~v~~~~~-P~~ihi~v~ 75 (143)
|..++.++..+.++++.++|+++||+. ...+| .. ++++|..++..+ .++.+.+.++|-+.+.... +..+|+++.
T Consensus 256 g~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~ 335 (355)
T cd00611 256 GVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSVGGIRASIY 335 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCcccCeEEEEcc
Confidence 688999999999999999999999874 22222 34 569999776411 4444567779987555433 567999997
Q ss_pred ecccChhHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREE 94 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~a 94 (143)
. ..+.+.++.|++-|++.
T Consensus 336 ~-~nt~edi~~l~~al~~~ 353 (355)
T cd00611 336 N-ALSLEGVQALADFMKEF 353 (355)
T ss_pred C-CCCHHHHHHHHHHHHHH
Confidence 5 44578899998877764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.03 Score=52.60 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEec--c--Cc--eeEEEEec-C---CCCHHHHHHHHhhcCceecCCCCC--C
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFG--T--PA--TSVIALGS-D---VFHIYRLSSGLNKRGWNTNSLQFP--V 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg--~--p~--l~vVaf~~-~---~~~i~~l~d~L~~rGW~v~~~~~P--~ 68 (143)
+|++++++.++.+|+|++++|++. +++.. . +. -.++.|.. + +.+.-+++++|.+.|.+.+....| .
T Consensus 770 ~Glr~~a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~ 847 (954)
T PRK05367 770 EGLRQATEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAG 847 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCC
Confidence 589999999999999999999874 44432 1 22 24444431 1 356789999999999999885554 4
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+.|+++-. .+.+.+|+|++-|+.+.+++.+
T Consensus 848 ~l~i~ptE~-~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 848 TLMVEPTES-ESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred EEEEEeeec-CCHHHHHHHHHHHHHHHHHHHH
Confidence 567777653 3478999999999888888776
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.03 Score=45.38 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC----CCeeeEEEEecc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF----PVGIHICITHMH 78 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~----P~~ihi~v~~~h 78 (143)
+.+..+...+.++.+.+.|++++|+++. .+..+.+.|..+. +-.++.+.|.++|+.+..... +..+|+++.
T Consensus 259 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~-~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~--- 333 (346)
T TIGR01141 259 IEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR-DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG--- 333 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC-CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---
Confidence 4566777888899999999999899864 3445677776655 778899999999998865432 567888754
Q ss_pred cChhHHHHHHHHH
Q psy10208 79 TQPGVADKFISDV 91 (143)
Q Consensus 79 ~~~~~~~~fl~Dl 91 (143)
+++.+++|++.|
T Consensus 334 -~~~~i~~~~~~l 345 (346)
T TIGR01141 334 -TREENDRFLAAL 345 (346)
T ss_pred -CHHHHHHHHHHh
Confidence 346777777655
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.036 Score=48.12 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCH--HHHHHHHhhcCc-eecCCCCC--CeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHI--YRLSSGLNKRGW-NTNSLQFP--VGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i--~~l~d~L~~rGW-~v~~~~~P--~~ihi~v~ 75 (143)
+|.++.+++-.+.++.+..-+.+-+-||+..+..+.+|||+.++-|- -.|..+++.+|= ++.....- --+|++|.
T Consensus 370 e~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~ 449 (511)
T KOG0628|consen 370 ENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVC 449 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEec
Confidence 46778888889999999999999999999999999999999875443 467788888774 33332222 24799999
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.+.++.++++.=.+-+.++.+.+...
T Consensus 450 s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 450 SPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888888886654
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.025 Score=47.16 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHh-hcCceecCCCC---C---CeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLN-KRGWNTNSLQF---P---VGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~-~rGW~v~~~~~---P---~~ihi~v~~~ 77 (143)
+.++..+.++++.++|+++ |+.++.+ ..+++.+.... .+..++.++|. ++|..+..... | ..+|++++..
T Consensus 300 ~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~ 377 (402)
T TIGR01821 300 LRRAHQENVKRLKNLLEAL-GIPVIPN-PSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPA 377 (402)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCCC-CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCC
Confidence 3445567889999999998 7887653 45566654332 23467888886 56988866432 2 3588888765
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+ ++.+++|++-|+++++++
T Consensus 378 ~t-~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 378 HT-DKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CC-HHHHHHHHHHHHHHHHHc
Confidence 55 689999999999987664
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.024 Score=45.81 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----ceeEEEEecC---CCCHHHHHHHHhhcCceecC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-----ATSVIALGSD---VFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----~l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~ 63 (143)
+.++.++..++++++.++|++++|+++++.+ ..++++|..+ ..+-.++.+.|+++|..+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~ 298 (352)
T cd00616 230 LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRV 298 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeee
Confidence 4456677788999999999999999998753 3467888765 57889999999999986553
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.035 Score=47.96 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=79.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----eeEEEEe----cCCCCHHHHHHHHhhcCceecCCCCCCeee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----TSVIALG----SDVFHIYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----l~vVaf~----~~~~~i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
+|-+++.+.-+=+|.||+++|+. .|+++-.+. -+|+.-+ ..++...|++.+|-..|+|-|+..+|.-++
T Consensus 341 ~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~ 418 (496)
T COG1003 341 DGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVA 418 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCccccc
Confidence 57889999999999999999997 577765543 2455444 237899999999999999999999995554
Q ss_pred --EEEEeccc-ChhHHHHHHHHHHHHHHHHHcCCCC
Q psy10208 72 --ICITHMHT-QPGVADKFISDVREELAIIMQNPGL 104 (143)
Q Consensus 72 --i~v~~~h~-~~~~~~~fl~Dl~~ai~~~~~~p~~ 104 (143)
++|-|--+ +.+-+|+|++-|.++.++.++.|..
T Consensus 419 ~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~~~ 454 (496)
T COG1003 419 GTLMIEPTESESKEELDRFIDAMIAIREEADAVPAG 454 (496)
T ss_pred cceeecCCCCCCHHHHHHHHHHHHHHHHHHHhccCC
Confidence 55544222 3577999999999999999998743
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.042 Score=43.65 Aligned_cols=88 Identities=7% Similarity=-0.070 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC-CHHHHHHHHhhcCceecCCC-----CCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF-HIYRLSSGLNKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~-~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
++.+..+.+.+.++++.+.|++++...+...+....+.|..... +...+.+.|.+.|..+.... .+..+|+++.
T Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~ 335 (350)
T cd00609 256 HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFA 335 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEee
Confidence 57788889999999999999998665543334445555665443 55577888888898887764 4567899887
Q ss_pred ecccChhHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVR 92 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~ 92 (143)
.. .+.++.|++-|+
T Consensus 336 ~~---~~~i~~~~~al~ 349 (350)
T cd00609 336 TP---EEELEEALERLA 349 (350)
T ss_pred CC---HHHHHHHHHHhh
Confidence 64 467777766543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.071 Score=44.42 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCC---------HHHHHHHHhhcCceecCCCCCCeeeEEEEe
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFH---------IYRLSSGLNKRGWNTNSLQFPVGIHICITH 76 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~---------i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~ 76 (143)
++..+.+++++++|++++||+++++ ...|+++|....++ -+.+.+.|+++|=..... ....++.+.+.
T Consensus 283 ~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~-~~~~i~ri~~~ 361 (387)
T PRK09331 283 DEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP-GATKEFKLSTY 361 (387)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEcc-CCceEEEEEec
Confidence 3456789999999999999999964 34667777644321 245889999998763221 12223333333
Q ss_pred cccChhHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.| +++.++.+++=|+++.++
T Consensus 362 g~-t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 362 GL-TWEQVEYVADAFKEIAEK 381 (387)
T ss_pred cC-CHHHHHHHHHHHHHHHHh
Confidence 44 468888888888877554
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.026 Score=47.23 Aligned_cols=88 Identities=14% Similarity=0.218 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhh-cCceecCCCC---C---CeeeEEEEeccc
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNK-RGWNTNSLQF---P---VGIHICITHMHT 79 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~-rGW~v~~~~~---P---~~ihi~v~~~h~ 79 (143)
++..+.++++.++|+++ |++++ .+..+++.+...+ .+..++.++|.+ +|+.+..... | ..+|+++...|+
T Consensus 302 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t 379 (406)
T PRK13393 302 ERHQDRVARLRARLDKA-GIPHL-PNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHT 379 (406)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcC-CCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCC
Confidence 34567788999999987 77765 3445555554322 345678888887 5999876432 3 347888865454
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
++.+++|++-|+++++.+
T Consensus 380 -~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 380 -DADIEHLVQALSEIWARL 397 (406)
T ss_pred -HHHHHHHHHHHHHHHHhc
Confidence 688999999998886553
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.03 Score=47.04 Aligned_cols=91 Identities=10% Similarity=0.088 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc------------eeEEEEecC-CCCHHHHHHHHhhcC--ceecCCC---
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA------------TSVIALGSD-VFHIYRLSSGLNKRG--WNTNSLQ--- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~------------l~vVaf~~~-~~~i~~l~d~L~~rG--W~v~~~~--- 65 (143)
....++-.++++++++.|++.|+++.+..|. .++|+|..+ ..+..++.+.|+..+ +.+....
T Consensus 259 ~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv 338 (389)
T PRK05968 259 PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLV 338 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCcee
Confidence 4566777888999999999999998887663 249999875 556788889987644 2211110
Q ss_pred --------------------C-CCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 66 --------------------F-PVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 66 --------------------~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
. +.-+|++|-- +..+.+++||+.+++.++
T Consensus 339 ~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl-----E~~~dl~~dl~~al~~~~ 388 (389)
T PRK05968 339 VPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL-----EGTEALWADLEQALAAAS 388 (389)
T ss_pred eeCcccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHHhh
Confidence 1 1235666642 789999999999998654
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.085 Score=43.56 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhCCCeeEecc-CceeEEEEec--CCCCHHHHHHHHhhcCceecCCC------CCCeeeEEEEecccCh
Q psy10208 11 IETVKYIEKELRSMDGLFIFGT-PATSVIALGS--DVFHIYRLSSGLNKRGWNTNSLQ------FPVGIHICITHMHTQP 81 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~~------~P~~ihi~v~~~h~~~ 81 (143)
-+..+.+.+.|++++|+.+... +..+.+.+.. ..+|..++.++|.++|+.+.... .+..+|+++.. +.
T Consensus 284 ~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~---~~ 360 (380)
T PRK06225 284 FKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI---PR 360 (380)
T ss_pred HHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC---CH
Confidence 3446667888888878654322 3444544443 24688899999999999876531 23468888753 35
Q ss_pred hHHHHHHHHHHHHHHHHHc
Q psy10208 82 GVADKFISDVREELAIIMQ 100 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.++++++.|+++++.++.
T Consensus 361 e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 361 EQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 8999999999999998874
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.06 Score=44.23 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCC---Ce-eeEEEEe-cc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFP---VG-IHICITH-MH 78 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P---~~-ihi~v~~-~h 78 (143)
+..+++.+.++++.++|+++ |+++.. |..+++.+.... .+..++.+.|.++|+.++....| .+ .++.+++ .+
T Consensus 285 ~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~ 362 (385)
T TIGR01825 285 ELMERLWDNTRFFKAGLGKL-GYDTGG-SETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAE 362 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCC
Confidence 45677788899999999987 888653 444566655332 23467889998899988654332 12 2343333 24
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAII 98 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+.+.++++++-|+++++++
T Consensus 363 ~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 363 HTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 56789999999999887653
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.063 Score=44.90 Aligned_cols=94 Identities=10% Similarity=0.155 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecC--CCCHHHHHHHHhhcCceecCCC---------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQ---------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~---------~P~~ 69 (143)
|+.+..++..++++++.++|+++ |+++..+ +..+++.+..+ .++-.++.+.|+++|..+.... .|.+
T Consensus 280 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~ 358 (416)
T PRK00011 280 EFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSG 358 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCc
Confidence 45677888999999999999997 8887642 34466665543 4567789999999999886321 2445
Q ss_pred eeEEEEec---ccChhHHHHHHHHHHHHHH
Q psy10208 70 IHICITHM---HTQPGVADKFISDVREELA 96 (143)
Q Consensus 70 ihi~v~~~---h~~~~~~~~fl~Dl~~ai~ 96 (143)
+|+..+.. ..+.+.++.+++-|++++.
T Consensus 359 ~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~ 388 (416)
T PRK00011 359 IRIGTPAITTRGFKEAEMKEIAELIADVLD 388 (416)
T ss_pred eEecCHHHhhcCcCHHHHHHHHHHHHHHHh
Confidence 77744321 1235778888777776644
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.026 Score=49.17 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cCCCCHHHHHHHHhhcCceecCCCCC---Ce---eeEEEEecc
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SDVFHIYRLSSGLNKRGWNTNSLQFP---VG---IHICITHMH 78 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~~~~i~~l~d~L~~rGW~v~~~~~P---~~---ihi~v~~~h 78 (143)
..+++.++.+++.+. . |+.+ + .||+.+. .+......++++|.++|+++++...| .+ +||+++..|
T Consensus 372 ~r~~L~~n~~~fr~~---~-G~~~-~---sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~H 443 (476)
T PLN02955 372 RRKAIWERVKEFKAL---S-GVDI-S---SPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAH 443 (476)
T ss_pred HHHHHHHHHHHHHHh---c-CCCC-C---CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCC
Confidence 345667777777763 2 5553 3 4455443 23445678899999999999875543 33 899999988
Q ss_pred cChhHHHHHHHHHHHHHHHHHc
Q psy10208 79 TQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+ .+.++.+++-|.++.+.+..
T Consensus 444 t-~edId~lv~~L~~~~~~~~~ 464 (476)
T PLN02955 444 T-TEDVKKLITALSSCLDFDNT 464 (476)
T ss_pred C-HHHHHHHHHHHHHHHhhhcc
Confidence 7 57899999999888665543
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.049 Score=44.94 Aligned_cols=92 Identities=13% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCC------CeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFP------VGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~~ 76 (143)
.+..+++.+.++++.++|+++ |+++.+ |..+++.|...+ .+..++.+.|.++|-.+.....| ..+|+++..
T Consensus 292 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~ 369 (393)
T TIGR01822 292 NELRDRLWANTRYFRERMEAA-GFDIKP-ADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISA 369 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECC
Confidence 345667788889999999887 887653 344566665432 45578999999999777643332 236777776
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.| +.+.++++++-|+++.+++
T Consensus 370 ~~-t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 370 AH-TEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred CC-CHHHHHHHHHHHHHHHHHh
Confidence 44 4688999999888876543
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.14 Score=43.00 Aligned_cols=96 Identities=10% Similarity=-0.062 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-Cc--e-eEEEEec-CCCCHHHHHHHHh-hcCceecCCCC---CCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PA--T-SVIALGS-DVFHIYRLSSGLN-KRGWNTNSLQF---PVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~--l-~vVaf~~-~~~~i~~l~d~L~-~rGW~v~~~~~---P~~ihi 72 (143)
|..++.++..+.++++.++|+++ |++++++ +. . .+++|.. +.++..++...|. ++|-.+..-+. ...+||
T Consensus 270 G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Ri 348 (401)
T PLN02409 270 GLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRI 348 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEE
Confidence 67778888999999999999998 8999984 22 3 4566765 4678788887775 56766665543 457999
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..|. ..+++.+..+++-|.+++..+.
T Consensus 349 g~~g-~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 349 GHLG-NVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred cCCC-CCCHHHHHHHHHHHHHHHHHcC
Confidence 9987 4567888999999999877655
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=41.56 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
+..++..+.++++.++|+++ |+++. +|+.+.+-++.++.+-.++.+.|+++|+.+... | .+|++.+. .++++..
T Consensus 247 ~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~~--~-~~rl~~~~-r~t~e~~ 320 (333)
T PRK10534 247 ARLQEDHDNAAWLAEQLREA-GADVM-RQDTNMLFVRVGEEQAAALGEYMRERNVLINAS--P-IVRLVTHL-DVSREQL 320 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccC-CCCceEEEEECCchhHHHHHHHHHHcCeeecCC--c-eEEEEEEe-CCCHHHH
Confidence 34455566778999999998 88754 567887777654335568889999999999643 2 36776653 3467889
Q ss_pred HHHHHHHHHH
Q psy10208 85 DKFISDVREE 94 (143)
Q Consensus 85 ~~fl~Dl~~a 94 (143)
++|++-|++.
T Consensus 321 ~~~~~~l~~~ 330 (333)
T PRK10534 321 AEVVAHWRAF 330 (333)
T ss_pred HHHHHHHHHH
Confidence 9998888754
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.1 Score=41.90 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC--CCHHHHHHHHh---hcCceecCCCCCCeeeEEEEe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV--FHIYRLSSGLN---KRGWNTNSLQFPVGIHICITH 76 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~--~~i~~l~d~L~---~rGW~v~~~~~P~~ihi~v~~ 76 (143)
+|.+..+++.+.++++.++|+++ |+. ..++..+++.+..+. .-.-.+.++|. ++|+.+.... +..+|+++..
T Consensus 245 ~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~-~~~lRi~~~~ 321 (338)
T cd06502 245 LWLRRLRHDHEMARRLAEALEEL-GGL-ESEVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWG-EGGVRFVTHW 321 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCC-cccccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecC-CCeEEEEeec
Confidence 57788899999999999999998 554 445777888776532 11124444443 6798876542 2568888864
Q ss_pred cccChhHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVRE 93 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ 93 (143)
+.+++.++++++-+++
T Consensus 322 -~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 322 -DTTEEDVDELLSALKA 337 (338)
T ss_pred -CCCHHHHHHHHHHHhc
Confidence 4456777888776653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.15 Score=41.65 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----CCCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~h 78 (143)
+++.+...+..+++.+.|+++ |+++...+..+.+.++.++ ...+.+.|+++|..+.... .+..+||++..
T Consensus 256 ~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~~--~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~~-- 330 (349)
T PRK07908 256 AADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVPD--AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVRP-- 330 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECCc--HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeCC--
Confidence 345666777788899999998 8887766667777776654 4688899999999886532 25678998852
Q ss_pred cChhHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREEL 95 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai 95 (143)
++..++|++-|++.+
T Consensus 331 --~~~~~~l~~al~~~~ 345 (349)
T PRK07908 331 --RAEVPVLVQALAEIL 345 (349)
T ss_pred --CccHHHHHHHHHHHH
Confidence 468888888887764
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.073 Score=44.54 Aligned_cols=90 Identities=13% Similarity=0.225 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHh-hcCceecCCCCC------CeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLN-KRGWNTNSLQFP------VGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~-~rGW~v~~~~~P------~~ihi~v~~~ 77 (143)
..+++.+.++++.++|+++ |+++. ++..+++.+.. +..+..++.++|. ++|..+.....| ..+|++++..
T Consensus 301 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~ 378 (410)
T PRK13392 301 ERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPL 378 (410)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCC
Confidence 3456778889999999998 88865 45555554432 2234568999985 689988764332 3588988765
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+ .+.++.|++-|+++.+++
T Consensus 379 ~t-~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 379 HD-DEDIDALVAALVAIWDRL 398 (410)
T ss_pred CC-HHHHHHHHHHHHHHHHHc
Confidence 65 578999999998886543
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.078 Score=43.26 Aligned_cols=88 Identities=14% Similarity=0.277 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCC---C---CeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQF---P---VGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~---P---~~ihi~v~~ 76 (143)
.++.+++.+.++++.+.|+++ |+++. .|..+.+.|..+. .+-.++.+.|.++|-.+..... | ..+|+++..
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~ 367 (385)
T PRK05958 290 PERRERLAALIARLRAGLRAL-GFQLM-DSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTA 367 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecC
Confidence 356678888899999999987 67754 4677788887643 4556899999999998865322 2 357777743
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
..+.+.++.+++-|+++
T Consensus 368 -~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 368 -AHTEADIDRLLEALAEA 384 (385)
T ss_pred -CCCHHHHHHHHHHHHhc
Confidence 34567888888877654
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=41.41 Aligned_cols=89 Identities=18% Similarity=0.370 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCC------CCeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQF------PVGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~------P~~ihi~v~~ 76 (143)
.++.+++.+.++++.++|+++ |+++++++...++++... ..+..++.+.|.++|=.+..... ...+|+++..
T Consensus 253 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~ 331 (349)
T cd06454 253 PERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSA 331 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeC
Confidence 456778888999999999998 888887765545555432 34567899999998866643211 3468888864
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
+.+.+.++++++-|+++
T Consensus 332 -~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 332 -AHTKEDIDRLLEALKEV 348 (349)
T ss_pred -CCCHHHHHHHHHHHHHh
Confidence 45567888888877653
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.014 Score=52.19 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhC------CCeeE--eccCceeEEEEec
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSM------DGLFI--FGTPATSVIALGS 42 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i------~g~~v--lg~p~l~vVaf~~ 42 (143)
+||.++.++++++|+++.+.|+++ +.|++ +.+|++++|||+-
T Consensus 452 ~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~ 501 (608)
T TIGR03811 452 TGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVF 501 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEE
Confidence 599999999999999999999984 55776 7889999999984
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.18 Score=41.41 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVAD 85 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~ 85 (143)
..+.+.+..+++.+.|+++ |+++... +.+.|-..+ +..++.+.|.++|..+-....+..+||++.. +++..+
T Consensus 250 ~~~~~~~~r~~l~~~L~~~-g~~~~~~---~~f~~~~~~-~~~~l~~~l~~~GI~vr~~~~~~~lRisi~~---~~~e~~ 321 (339)
T PRK06959 250 MRERLAADGARLAALLRAH-GFAVHAT---PLFSWTDDP-RAAALHAALARRGIWTRYFAPPPSVRFGLPA---DEAEWQ 321 (339)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCccCc---ceEEEEeCC-CHHHHHHHHHhCCeEEEECCCCCeEEEECCC---CHHHHH
Confidence 3455666788899999998 7776532 233332212 5678999999999999766666788888742 235788
Q ss_pred HHHHHHHHHHHHHHc
Q psy10208 86 KFISDVREELAIIMQ 100 (143)
Q Consensus 86 ~fl~Dl~~ai~~~~~ 100 (143)
.|++-|++.++.+..
T Consensus 322 ~l~~al~~~~~~~~~ 336 (339)
T PRK06959 322 RLEDALAECVPTLAA 336 (339)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999888877764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.13 Score=48.25 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC------ceeEEEEe-c---CCCCHHHHHHHHhhcCceecCCCC--CCeee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP------ATSVIALG-S---DVFHIYRLSSGLNKRGWNTNSLQF--PVGIH 71 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------~l~vVaf~-~---~~~~i~~l~d~L~~rGW~v~~~~~--P~~ih 71 (143)
++.++.++.+++|++++|++ ++.+..+| .-.++.+. . .+.+..+++++|.++|.+.+.... +..++
T Consensus 774 k~aa~~ailnAnYla~rL~~--~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~Lm 851 (954)
T PRK12566 774 ADASEVAILSANYLANQLGG--AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLM 851 (954)
T ss_pred HHHHHHHHHHHHHHHHHhHh--hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEE
Confidence 45566678899999999987 45555443 11233322 1 136778999999999998887544 44678
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++.+-.+. .+.+|+|++-|+.+.+++++
T Consensus 852 IepTE~es-keEIDrf~eAL~~I~~e~~~ 879 (954)
T PRK12566 852 VEPTESES-KAELDRFVEAMLSIRAEIGK 879 (954)
T ss_pred EEeeeeCC-HHHHHHHHHHHHHHHHHHHH
Confidence 88876554 68899999999888877654
|
|
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.043 Score=47.39 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=70.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEec-----C------CCC--HH----HHHHHHhhcCcee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGS-----D------VFH--IY----RLSSGLNKRGWNT 61 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~-----~------~~~--i~----~l~d~L~~rGW~v 61 (143)
.||.+.+.+++++|+|+.+.|++-+|++.+.+ |+...|||=- + ..+ +. .+-.+|-++|=..
T Consensus 390 ~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~M 469 (510)
T KOG0629|consen 390 QGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTM 469 (510)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhcccee
Confidence 59999999999999999999999999998765 7877788731 1 111 11 3447788888877
Q ss_pred cCCC----CCCeeeEEEEecccChhHHHHHHHHHHHH
Q psy10208 62 NSLQ----FPVGIHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 62 ~~~~----~P~~ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
-.|| .|.-.|++++++-.+...++=+++.+...
T Consensus 470 i~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 470 IGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred eEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 6665 36667999998877777777777766543
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.3 Score=40.16 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
.+..+++.+..+.+.+.|++. |+.+. .|+.+.+.|... .+...+.+.|.++|+.+.....|..+|+++.. .+.
T Consensus 278 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~----~~~ 350 (368)
T PRK03317 278 LASVAALRAERDRVVAWLREL-GLRVA-PSDANFVLFGRF-ADRHAVWQGLLDRGVLIRDVGIPGWLRVTIGT----PEE 350 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEeC-CCCCcEEEEecc-CCHHHHHHHHHHCCEEEEeCCCCCeEEEecCC----HHH
Confidence 344566667777888889887 77654 466666666332 25678899999999999877667788888752 356
Q ss_pred HHHHHHHHHHHHH
Q psy10208 84 ADKFISDVREELA 96 (143)
Q Consensus 84 ~~~fl~Dl~~ai~ 96 (143)
++.|++-|+++++
T Consensus 351 ~~~~~~~l~~~~~ 363 (368)
T PRK03317 351 NDAFLAALAEVLA 363 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888877754
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.16 Score=41.73 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC----CCCeeeEEEEecccC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ----FPVGIHICITHMHTQ 80 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~----~P~~ihi~v~~~h~~ 80 (143)
+..+.+.+.++++.+.|++++|++.+.++..+-+-++.. +..++.+.|.++|+.+.... .+..+|+++. +
T Consensus 266 ~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~--~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~----~ 339 (351)
T PRK01688 266 ERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT--ASSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG----T 339 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--CHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC----C
Confidence 344566677889999999998886555666655555543 45789999999999886542 2456777775 2
Q ss_pred hhHHHHHHHHH
Q psy10208 81 PGVADKFISDV 91 (143)
Q Consensus 81 ~~~~~~fl~Dl 91 (143)
++..+.|++-|
T Consensus 340 ~~e~~~l~~al 350 (351)
T PRK01688 340 REECQRVIDAL 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 46777777654
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.2 Score=41.84 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--cee---EEEEecCCCCHHHHHHHHhh----cCce-----------ec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATS---VIALGSDVFHIYRLSSGLNK----RGWN-----------TN 62 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~---vVaf~~~~~~i~~l~d~L~~----rGW~-----------v~ 62 (143)
..++.++....++++.++|++++++++++++ ..| +|+|.. .+-.++...|+. .|=+ +.
T Consensus 261 ~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~--~~~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~ 338 (402)
T TIGR02006 261 MAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNY--VEGESLIMALKDLAVSSGSACTSASLEPSYVLR 338 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeC--cCHHHHHHhcCCEEEechhhcCCCCCCccHHHH
Confidence 4556677888999999999999999998764 232 577763 233355555532 1111 11
Q ss_pred CCCC-----CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SLQF-----PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~~~-----P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.... ...+|+++.. .++.+.+|.|++-|+++++.++.
T Consensus 339 ~lg~~~~~~~~~vR~S~~~-~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 339 ALGINDELAHSSIRFTIGR-FTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred HcCCChhhcCceEEEEecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 1111 2568999975 46689999999999999888764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.35 Score=41.37 Aligned_cols=98 Identities=14% Similarity=0.263 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCC---------CCCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL---------QFPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~---------~~P~~ 69 (143)
||++-+++++++|+.|++.+.+. ||++++ |.++-+|-+++++++--+..+.|.+-|-.++.- ..|.+
T Consensus 281 ~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSG 359 (413)
T COG0112 281 EFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSG 359 (413)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCcc
Confidence 78999999999999999999995 999995 467777777766777788888888888777653 23678
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
|||-. +..|++++=+.=.+.+.+.+..+-.+
T Consensus 360 IRiGt-pa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 360 IRIGT-PAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred ceecc-HHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 89855 45666555444444444444444444
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.17 Score=42.02 Aligned_cols=92 Identities=9% Similarity=0.090 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
..+++.+..+++.++|+++ ++.++++ ...+++.+..+.-+...+.++|.++|..+... .+..+|++....+ +++.
T Consensus 304 ~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~p~~~~-t~~~ 380 (398)
T PRK03244 304 LLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAPVAKAVEAAAREAGFLVNAV-APDVIRLAPPLII-TDAQ 380 (398)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEeccHHHHHHHHHHHCCeEEeec-CCCEEEEECCCcC-CHHH
Confidence 3456666788899999987 3433332 12334444433224567889999999888653 3567888775434 5789
Q ss_pred HHHHHHHHHHHHHHHHc
Q psy10208 84 ADKFISDVREELAIIMQ 100 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~~~~ 100 (143)
++.+++-|++++..++.
T Consensus 381 i~~~~~~l~~~l~~~~~ 397 (398)
T PRK03244 381 VDAFVAALPAILDAAAA 397 (398)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999887653
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.44 Score=39.05 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-CCCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-VFHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-~~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
++..+++.+..+.+.+.|++++|+++.. |+-..+.| ..+ ..+..++++.| +++|..+.... .+..+|+++.
T Consensus 285 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~ 363 (382)
T PRK06108 285 AELVARLRRSRDHLVDALRALPGVEVAK-PDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFA 363 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec
Confidence 4556677778888999999988888654 54444443 443 34677899987 56898874421 2456888887
Q ss_pred ecccChhHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai 95 (143)
. +.+.+++.++.|++++
T Consensus 364 ~---~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 364 R---DPARLDEAVERLRRFL 380 (382)
T ss_pred C---CHHHHHHHHHHHHHHH
Confidence 5 4577777787777654
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.23 Score=41.27 Aligned_cols=84 Identities=13% Similarity=0.072 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhCCCeeEeccC-------ceeEEEEec--CCCCHHHHHHHHhhcCceecCC--CCCC-eeeEEEEe
Q psy10208 9 SIIETVKYIEKELRSMDGLFIFGTP-------ATSVIALGS--DVFHIYRLSSGLNKRGWNTNSL--QFPV-GIHICITH 76 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~i~g~~vlg~p-------~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~--~~P~-~ihi~v~~ 76 (143)
+..+.+.++.++|++++|+++...+ ..+.|.|.. .+++-.++++.|+++|=.+.+- ..+. .+++...
T Consensus 267 ~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~- 345 (363)
T TIGR01437 267 EMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPR- 345 (363)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEee-
Confidence 3445677899999999999988532 135677876 3678899999999888444332 2233 3444443
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
..+++.++.+++-|+++
T Consensus 346 -~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 346 -SVTGGQLDIIVERIREI 362 (363)
T ss_pred -cCCHHHHHHHHHHHHHh
Confidence 45567788887777664
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.21 Score=46.07 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCC------CeeEeccC--------ceeEEEEecCCCC-----HHHHHHHHhhcCceec
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMD------GLFIFGTP--------ATSVIALGSDVFH-----IYRLSSGLNKRGWNTN 62 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~------g~~vlg~p--------~l~vVaf~~~~~~-----i~~l~d~L~~rGW~v~ 62 (143)
|..++.+.+.+.++++.++|++++ +++++|.+ ..|+|+|...+.+ ..+++..+.++|=.+-
T Consensus 337 g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR 416 (805)
T PLN02724 337 TISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLR 416 (805)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEe
Confidence 667888999999999999999997 58999853 5799999865433 3445544455665552
Q ss_pred CC-------------------------------------CCC-CeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 63 SL-------------------------------------QFP-VGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 63 ~~-------------------------------------~~P-~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+- ..| ..+|+++..-+ +.+.++.|++=|++..
T Consensus 417 ~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~yn-t~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 417 TGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMS-TFEDCQKFIDFIISSF 486 (805)
T ss_pred eccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccC-CHHHHHHHHHHHHHHh
Confidence 21 114 56888887644 4688999998888874
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.27 Score=41.26 Aligned_cols=91 Identities=8% Similarity=0.068 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEe-ccC---ceeEEEEecCCC-CHHHHHHHHhhcCceecC-CCCCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIF-GTP---ATSVIALGSDVF-HIYRLSSGLNKRGWNTNS-LQFPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vl-g~p---~l~vVaf~~~~~-~i~~l~d~L~~rGW~v~~-~~~P~~ihi~v~ 75 (143)
|..++.++..+.+++|.++|++++||... .+| ..++|+|+.++. +..++.+.++++|-..-. +..-.++|+++.
T Consensus 263 Gl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~y 342 (365)
T PLN02452 263 GLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIY 342 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCccccCceEEECc
Confidence 78889999999999999999999888322 222 346899997543 445788999999986544 444457999998
Q ss_pred ecccChhHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVRE 93 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ 93 (143)
+.. ..+.++.|++-+++
T Consensus 343 na~-~~~~v~~L~~~m~~ 359 (365)
T PLN02452 343 NAM-PLAGVEKLVAFMKD 359 (365)
T ss_pred CCC-CHHHHHHHHHHHHH
Confidence 644 45666666655544
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.25 Score=40.82 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCC--CeeeEEEEecccChhH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFP--VGIHICITHMHTQPGV 83 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P--~~ihi~v~~~h~~~~~ 83 (143)
..+++.+.++++.++++.... .+..| |..+..+-..+.+.|.++|..+.....| +.+|+++...| +++.
T Consensus 266 ~~~~l~~l~~~l~~~l~~~~~-----~~~~~---i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~-t~ed 336 (370)
T PRK05937 266 ARKQLFRLKEYFAQKFSSAAP-----GCVQP---IFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFN-TEDE 336 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCC-----CCEEE---EEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCC-CHHH
Confidence 345566667777776654210 11123 3334444568899999999988754333 46999997644 5789
Q ss_pred HHHHHHHHHHHHHHHHcC
Q psy10208 84 ADKFISDVREELAIIMQN 101 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~~~~~ 101 (143)
++.|++-|+++++.+.++
T Consensus 337 id~l~~~L~~~~~~~~~~ 354 (370)
T PRK05937 337 VDILVSVLATYLEKYQKN 354 (370)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999998887665
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.28 Score=40.25 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCC------CCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQF------PVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~------P~~ihi~v~~~ 77 (143)
+..++..+.++++.+.|+++ |+++.. |..+.+.+... ..+-.++.++|.++|..+..... +..+|+++...
T Consensus 297 ~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~ 374 (397)
T PRK06939 297 ELRDRLWENARYFREGMTAA-GFTLGP-GEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAA 374 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCC
Confidence 44566777888899999987 677653 44445544432 24557899999999988764322 23477776543
Q ss_pred ccChhHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAI 97 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+ +.+.++++++-|+++++.
T Consensus 375 ~-~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 375 H-TKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred C-CHHHHHHHHHHHHHHHHH
Confidence 3 468899999988887654
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.39 Score=39.22 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEeccc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHT 79 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~ 79 (143)
.++.+...+..+.+.+.|++. |+.+. .+..+.+.+.. +..+-.++++.|.++|..+.... .|..+|+++.
T Consensus 275 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---- 348 (367)
T PRK02731 275 EKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---- 348 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC----
Confidence 344455556677788888888 77765 45667777776 35688899999999998886643 2456888875
Q ss_pred ChhHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELA 96 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~ 96 (143)
+.+-++.|++-|+++++
T Consensus 349 ~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 349 TEEENRRFLAALKEFLA 365 (367)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 23677888888877653
|
|
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.22 Score=41.46 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCC---CCe---eeEEEEe
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF---PVG---IHICITH 76 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~---P~~---ihi~v~~ 76 (143)
+..+..-.+++++++..+.- ||.+.|. |..||+- ...+ -....+|.|-++|.+|-.... |++ +|+.++.
T Consensus 316 ~~i~~~~a~~qrfr~~me~a-GftIsg~~hPI~pv~l-Gda~-lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSA 392 (417)
T KOG1359|consen 316 KEIQSRQANTQRFREFMEAA-GFTISGASHPICPVML-GDAR-LASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISA 392 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CceecCCCCCccceec-ccHH-HHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEeh
Confidence 45566677888999998886 9999985 6667653 2211 234778999999999866544 443 7888888
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.|+ ++.+|++++-+.++-...
T Consensus 393 aHt-~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 393 AHT-EEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred hcC-HHHHHHHHHHHHHHHHhh
Confidence 887 478888888777765544
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.36 Score=39.38 Aligned_cols=85 Identities=14% Similarity=0.282 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----CCCeeeEEEEec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHM 77 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~ 77 (143)
+.+..+++.+.++++.+.|++++|+.+. .+..+.+.|+.+ +...+.+.|.++|+.+.... .+..+|+++..
T Consensus 266 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~- 341 (356)
T PRK04870 266 LDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP--DAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVGT- 341 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCCC-
Confidence 4456677778888899999999898754 445556666654 56788999999999885432 24568888763
Q ss_pred ccChhHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREE 94 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~a 94 (143)
.+..+.|++-|+++
T Consensus 342 ---~~~~~~l~~al~~~ 355 (356)
T PRK04870 342 ---PEENAQFLAALKAA 355 (356)
T ss_pred ---HHHHHHHHHHHHHh
Confidence 36788888777654
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.35 Score=40.03 Aligned_cols=92 Identities=13% Similarity=0.208 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeEEEEecC--CCCHHHHHHHHhhcCceecCCC---------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQ---------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~---------~P~~ 69 (143)
++.+..+++.+.++++.+.|++. |+.++..| ..+.+.+..+ ..+...+.+.|.++|=.+.... .+.+
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~ 354 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSG 354 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCe
Confidence 45677788999999999999998 89887543 4555555543 4556677788898897775321 2346
Q ss_pred eeEEEEecc---cChhHHHHHHHHHHHH
Q psy10208 70 IHICITHMH---TQPGVADKFISDVREE 94 (143)
Q Consensus 70 ihi~v~~~h---~~~~~~~~fl~Dl~~a 94 (143)
+|++.+..+ .+.+.++.+++-|+++
T Consensus 355 lRi~~~~~~~~~~~~~di~~~~~~l~~~ 382 (402)
T cd00378 355 IRIGTPAMTTRGMGEEEMEEIADFIARA 382 (402)
T ss_pred eEecCHHHHHhCCCHHHHHHHHHHHHHH
Confidence 888776533 1235556665555554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.23 Score=39.95 Aligned_cols=84 Identities=12% Similarity=0.279 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCC------CCCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQ------FPVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~------~P~~ihi~v~~~ 77 (143)
+..+++.+..+++.++|+++ ++++. .+..+.+.|..+. .+-.++.++|.++|..+.... .+..+|+++...
T Consensus 269 ~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~ 346 (360)
T TIGR00858 269 WRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAA 346 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCC
Confidence 45677888899999999997 67765 4556677776543 456789999999998885321 123688888753
Q ss_pred ccChhHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDV 91 (143)
Q Consensus 78 h~~~~~~~~fl~Dl 91 (143)
+ +.+.++.|++-|
T Consensus 347 ~-~~~~i~~~l~~l 359 (360)
T TIGR00858 347 H-TPGDIDRLAEAL 359 (360)
T ss_pred C-CHHHHHHHHHhh
Confidence 3 356777777644
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.45 Score=40.56 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCeeEeccC--ce-eEEEEecCCCCHHHHHHHHhhcCceecCCC---------------
Q psy10208 5 NTTRSIIETVKYIEKELRSM-DGLFIFGTP--AT-SVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------------- 65 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i-~g~~vlg~p--~l-~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------------- 65 (143)
....++.....+|.++|.+. |++.+-|++ .+ +++.|+-+++.--.+.-.|...|-.+++-.
T Consensus 260 ~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~A 339 (386)
T COG1104 260 EENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRA 339 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccccCCCCCccHHHHH
Confidence 44566778889999999865 999999874 23 355566577777788888888999887741
Q ss_pred -------CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 66 -------FPVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 66 -------~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
...++|+++.+ .++++.++.|++-++++++.++..
T Consensus 340 mG~~~e~a~~siR~S~g~-~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 340 MGISEELAHGSIRFSLGR-FTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred cCCChHHhCccEEEEcCC-CCCHHHHHHHHHHHHHHHHHHhhh
Confidence 13568999997 556899999999999999999874
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.52 Score=38.95 Aligned_cols=89 Identities=15% Similarity=0.224 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
|.+..++..+..+.+.+.|++++++.+. .+..+-+-++.+ ..+..++.+.|.++|..+.. .+..+||++.. .
T Consensus 283 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~--~~~~lRls~~~----~ 355 (374)
T PRK02610 283 LLAAIPEILQERDRLYQALQELPQLRVW-PSAANFLYLRLSQDAALAALHQALKAQGTLVRH--TGGGLRITIGT----P 355 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEeC-CCcceEEEEeCCCCCCHHHHHHHHHHCCEEEEe--CCCeEEEeCCC----H
Confidence 4556677777788888899988888754 333333334433 46788999999999998863 35678998863 2
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELAII 98 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~ 98 (143)
+..+++++-|++++..+
T Consensus 356 ~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 356 EENQRTLERLQAALTQL 372 (374)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34588888887776544
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.073 Score=45.88 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+|.+++++.++.+|+|++++|+++.++.+-+.+-.--|....+...+.++.++....|-.+.. ....++-+|++-.++
T Consensus 341 ~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~~~~~~l~~~~~~~gl~~~~-~~~~~~li~~TE~~t- 418 (429)
T PF02347_consen 341 EGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKDKEVEELLKRGIEGGLNLRY-PDDGALLICVTETRT- 418 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS-HHHHHHHHTT----EEEGG-G-SSEEEEE--TT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCcHHHHHHHHHHHhcCCCccc-cCCCeEEEEccCCCC-
Confidence 589999999999999999999998555544434333333333334455577777777733322 223467788887665
Q ss_pred hhHHHHHHH
Q psy10208 81 PGVADKFIS 89 (143)
Q Consensus 81 ~~~~~~fl~ 89 (143)
++.+|.|++
T Consensus 419 ~edid~lv~ 427 (429)
T PF02347_consen 419 KEDIDRLVE 427 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 577888775
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.9 Score=37.88 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEecc-----CceeEEEEecCCCCHHHHHHHHhhcC----ceecC----------
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGT-----PATSVIALGSDVFHIYRLSSGLNKRG----WNTNS---------- 63 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-----p~l~vVaf~~~~~~i~~l~d~L~~rG----W~v~~---------- 63 (143)
..++.++....++++.++|++++++++.++ |....++|...+ -.++...|++.| -+...
T Consensus 263 ~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~ 340 (404)
T PRK14012 263 MATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE--GESLIMALKDLAVSSGSACTSASLEPSYVLR 340 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC--HHHHHHhCCCeEEEchhhhCCCCCCCCHHHH
Confidence 445667778899999999999999998765 233457776532 235666665422 11100
Q ss_pred -C-----CCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 64 -L-----QFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 64 -~-----~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
. ..+..+|+++.. .++++.++.+++-|+++++.++.
T Consensus 341 ~~~~~~~~~~~~iRls~~~-~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 341 ALGLNDELAHSSIRFSLGR-FTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred HcCCChhhcCceEEEEecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 113568998875 46789999999999999888764
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.38 Score=40.68 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCC----CHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVF----HIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~----~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
..+++.+..+++.++|+++.++..+++ ..-.+++|...+- ..-.+...|.++|..+.... ..+|++... ..
T Consensus 328 ~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~lR~~p~l-~~ 404 (423)
T PRK05964 328 VLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLG--NTIYLMPPY-II 404 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEecC--CEEEEeCCc-cc
Confidence 456777788889998887754444443 2223444443221 14578899999998886532 345554432 34
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.+|.+++=|+++++++
T Consensus 405 t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 405 TAEELDRITDAIVEVADEL 423 (423)
T ss_pred CHHHHHHHHHHHHHHHhhC
Confidence 5789999999999988763
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.21 Score=42.68 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
.|++-+++++++|+.|++.|.+. ||++++. -++-+|-.+..+++-......|.+-|-.++... .|.++
T Consensus 297 ~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGl 375 (399)
T PF00464_consen 297 EFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGL 375 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEE
Confidence 47899999999999999999997 9999964 344445455557888899999999999887532 24689
Q ss_pred eEEEEecccChhHHH
Q psy10208 71 HICITHMHTQPGVAD 85 (143)
Q Consensus 71 hi~v~~~h~~~~~~~ 85 (143)
||-... .|++++-+
T Consensus 376 RlGT~~-lT~rG~~e 389 (399)
T PF00464_consen 376 RLGTPA-LTRRGMKE 389 (399)
T ss_dssp EEESHH-HHHTT--H
T ss_pred EECCHH-HHhCCCCH
Confidence 997653 55555554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.87 Score=37.27 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChhH
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPGV 83 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~ 83 (143)
.+.+.+.++++.+.|++++++++. .|..+-+-++.+ +..++.+.|.++|..+.... .+..+|+++.. .+.
T Consensus 269 ~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~--~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~~----~e~ 341 (354)
T PRK04635 269 VLDLNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFD--DVDAVFKALWDAGIVARAYKDPRLANCIRFSFSN----RAE 341 (354)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeCC----HHH
Confidence 445566678899999999777765 454444444333 45678899999999886543 34578888752 467
Q ss_pred HHHHHHHHHH
Q psy10208 84 ADKFISDVRE 93 (143)
Q Consensus 84 ~~~fl~Dl~~ 93 (143)
.+.|++-|++
T Consensus 342 ~~~l~~al~~ 351 (354)
T PRK04635 342 TDKLIGLIRN 351 (354)
T ss_pred HHHHHHHHHH
Confidence 8888877754
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.4 Score=36.63 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ec-CCCCHHHHHHHHh-hcCceecCCC-C----CCeeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GS-DVFHIYRLSSGLN-KRGWNTNSLQ-F----PVGIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~-~~~~i~~l~d~L~-~rGW~v~~~~-~----P~~ihi~v~ 75 (143)
.+..+.+.+.++.+.+.|++++++..+..|+...+.| +. .++|-.+++++|. ++|+.+.... + ...+|+++.
T Consensus 286 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~ 365 (389)
T PRK05957 286 QQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG 365 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe
Confidence 5556667778888999999988754455676555554 32 3678889999986 5899887642 1 235888885
Q ss_pred ecccChhHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
. .+.+.+++.++-|.+.++.+
T Consensus 366 ~--~~~~~l~~~~~~l~~~~~~~ 386 (389)
T PRK05957 366 A--LQKATAKEGIERLVQGLKTI 386 (389)
T ss_pred c--CCHHHHHHHHHHHHHHHHhh
Confidence 3 23466777777777766553
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.88 Score=37.74 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
+..+...+..+++.+.++++ |+++. .|+.+-+-+... +-..+.+.|.++|+.+-. +|.++||++.. .+..
T Consensus 273 ~~~~~~~~~r~~~~~~l~~~-g~~~~-~~~~nf~~~~~~--~~~~~~~~l~~~GI~Vr~--~~~~iRis~~~----~~~~ 342 (366)
T PRK01533 273 EIVRVNTEGLRQYESFCKEN-EIPFY-QSQTNFIFLPVE--NGGEIYEACAHAGFIIRP--FPNGVRITVGT----REQN 342 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccC-CCcCcEEEEeCC--CHHHHHHHHHHCCcEEcc--CCCceEEeCCC----HHHH
Confidence 33455566677777888887 67643 456655545443 456889999999999986 47889998875 3788
Q ss_pred HHHHHHHHHHHHHHHc
Q psy10208 85 DKFISDVREELAIIMQ 100 (143)
Q Consensus 85 ~~fl~Dl~~ai~~~~~ 100 (143)
+.|++-|++.++..+.
T Consensus 343 ~~l~~al~~~~~~~~~ 358 (366)
T PRK01533 343 EGVISVLQQHFENKKR 358 (366)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999877654443
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.1 Score=37.01 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC----CCCeeeEEEEecccC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ----FPVGIHICITHMHTQ 80 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~----~P~~ihi~v~~~h~~ 80 (143)
+..+++.+.++.+.+.|++++|+..+..+..+-+-++.+ +..++.+.|.++|+.+.... .+..+||++..
T Consensus 273 ~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~--~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~~---- 346 (364)
T PRK04781 273 RRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD--DAEAAFQALLAAGVVVRDQRAAPRLSDALRITLGT---- 346 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCCC----
Confidence 345556677788999999998875444455444445443 45688899999999886543 24568888763
Q ss_pred hhHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREE 94 (143)
Q Consensus 81 ~~~~~~fl~Dl~~a 94 (143)
.+..+.|++=|++.
T Consensus 347 ~~~~~~l~~al~~~ 360 (364)
T PRK04781 347 PEQNDRVLAALQRT 360 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 35677777766653
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.77 Score=37.51 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
.+..+.+.+..+++.+.|+++ |+++. .|+.+-+-+.....+-.++.++|.++|..+.. ++..+||++... +.
T Consensus 252 ~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~--~~~~~Risi~~~----~~ 323 (335)
T PRK14808 252 EERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFIFMEKEEKERLLEHLRAKNIAVRS--FREGVRITIGKR----EE 323 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEEC-CCCCeEEEEeCCCccHHHHHHHHHHCCeEEEE--CCCCeEEecCCH----HH
Confidence 445566677778888999998 77754 46666665555545667899999999998874 457899998764 45
Q ss_pred HHHHHHHHH
Q psy10208 84 ADKFISDVR 92 (143)
Q Consensus 84 ~~~fl~Dl~ 92 (143)
.+.|++-|+
T Consensus 324 ~~~~~~~l~ 332 (335)
T PRK14808 324 NDMILKELE 332 (335)
T ss_pred HHHHHHHHH
Confidence 667776654
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.51 Score=39.50 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------ceeEEEEecCC--CCHHHHHHHHhhcC--ceecCC----C
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTP-----------ATSVIALGSDV--FHIYRLSSGLNKRG--WNTNSL----Q 65 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------~l~vVaf~~~~--~~i~~l~d~L~~rG--W~v~~~----~ 65 (143)
...++..++++++++.|+++|+++.+--| .-.+|+|..++ .+...+.++|+..+ +.+... .
T Consensus 259 ~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~ 338 (386)
T PRK06767 259 VRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQ 338 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCcccc
Confidence 45677889999999999999999976544 23689998753 36778889998654 222111 1
Q ss_pred CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 66 FP--------------------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 66 ~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.| .-+|++|- -|..+.+++||..+++.
T Consensus 339 ~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-----lE~~~dl~~dl~~al~~ 385 (386)
T PRK06767 339 HPATMTHAAIPAELRQEMGIYDNLIRLSVG-----LESWEDIVSDLEQALKK 385 (386)
T ss_pred CCCccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence 11 12455554 37899999999999863
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.47 Score=39.22 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-eeEec--cCceeEEEEecCC---------CCHHHHHHHHhhcCceecCCCCCCeeeEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDG-LFIFG--TPATSVIALGSDV---------FHIYRLSSGLNKRGWNTNSLQFPVGIHIC 73 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g-~~vlg--~p~l~vVaf~~~~---------~~i~~l~d~L~~rGW~v~~~~~P~~ihi~ 73 (143)
+.+++.+.++++.++++++.. +.++. .+.-++++|.... .+...+.+.|.++|..+.... +..+|++
T Consensus 314 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~-~~~lR~~ 392 (413)
T cd00610 314 LLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG-GNVIRLL 392 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC-CCEEEEE
Confidence 445666778888888877632 12222 2344566655422 356788999999998887654 5668888
Q ss_pred EEecccChhHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~a 94 (143)
++..|+ ++.++++++-|+++
T Consensus 393 ~~~~~t-~~~i~~~~~~l~~~ 412 (413)
T cd00610 393 PPLIIT-EEEIDEGLDALDEA 412 (413)
T ss_pred CCCcCC-HHHHHHHHHHHHHh
Confidence 876554 67888888888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.3 Score=36.19 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC----CCCeeeEEEEeccc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ----FPVGIHICITHMHT 79 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~----~P~~ihi~v~~~h~ 79 (143)
.+..+.+.+..+++.+.+++++|+.+. .|..+-+-++.. +...+.+.|.++|..+.... .+..+||++..
T Consensus 262 ~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~--~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~--- 335 (351)
T PRK14807 262 KERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFK--DADYVYQGLLERGILVRDFSKVEGLEGALRITVSS--- 335 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcC--CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCC---
Confidence 455566777788899999988898764 455544434433 46788999999999885532 24568888874
Q ss_pred ChhHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREE 94 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~a 94 (143)
.+..+.|++=|++.
T Consensus 336 -~~~~~~l~~~l~~~ 349 (351)
T PRK14807 336 -CEANDYLINGLKEL 349 (351)
T ss_pred -HHHHHHHHHHHHHh
Confidence 25677887777664
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.97 Score=39.08 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCC-CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMD-GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~-g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+|-+++++++...+.+|+++|+++. |++++.+.-+.-+.++.+.--.-.+..+-...|..+...- +..+-++++..++
T Consensus 355 ~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~-~~~~~ia~tEt~t 433 (450)
T COG0403 355 QGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEVAEALLAAAIAGGINLRRVD-ADTVLIALTETTT 433 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecchhHHHHHHHHHHhcCCceeeec-CCceEEEeecccC
Confidence 4889999999999999999999764 7999988777788887654112233444445676665432 3356688887444
Q ss_pred ChhHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREE 94 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~a 94 (143)
++.++.|++-+...
T Consensus 434 -~~~i~~l~~~~~~~ 447 (450)
T COG0403 434 -KEDIDALVAAFGGV 447 (450)
T ss_pred -HHHHHHHHHHHhhh
Confidence 67888888766543
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.6 Score=36.25 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCC---CCeeeEEEEeccc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQF---PVGIHICITHMHT 79 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~---P~~ihi~v~~~h~ 79 (143)
++..+.+.+..+++.+.|++++++.+ ..+..+.+-|..+ ..+-.++.+.|.++|..+..... +..+||++..
T Consensus 290 ~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~~--- 365 (380)
T PLN03026 290 EDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVGK--- 365 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecCC---
Confidence 34456667778889999999966654 3455666666654 46778999999999998865432 3468888762
Q ss_pred ChhHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVRE 93 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ 93 (143)
.+..+.|++-|++
T Consensus 366 -~~~~~~l~~al~~ 378 (380)
T PLN03026 366 -PEHTDALMEALKQ 378 (380)
T ss_pred -HHHHHHHHHHHHH
Confidence 3566777766654
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.7 Score=35.23 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEEeccc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICITHMHT 79 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~~~h~ 79 (143)
+..+...+..+++.+.|+++ |+++...|..+-+-++.+ +..++.+.|.++|..+.... + +..+||++..
T Consensus 243 ~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~--~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~~--- 316 (332)
T PRK06425 243 HSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP--DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIRR--- 316 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC--CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCC---
Confidence 34455556677888999998 788766676666666554 56789999999998775442 2 3468888864
Q ss_pred ChhHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREEL 95 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai 95 (143)
++..+.|++-|++.+
T Consensus 317 -~~~~~~l~~al~~~~ 331 (332)
T PRK06425 317 -RSFNIKLVNALRNFL 331 (332)
T ss_pred -HHHHHHHHHHHHHHh
Confidence 367888888887653
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.4 Score=37.28 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-C---ceeEEEEec--CCC-----C-----HHHHHHHHhhcCceecCCC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-P---ATSVIALGS--DVF-----H-----IYRLSSGLNKRGWNTNSLQ 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p---~l~vVaf~~--~~~-----~-----i~~l~d~L~~rGW~v~~~~ 65 (143)
|-.++-++-.+.++.+++++++++.++++.+ + .-.+++|+. .++ | ..++-..|+++|-.+..-+
T Consensus 260 Gle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~ 339 (374)
T TIGR01365 260 GLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGS 339 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccc
Confidence 5677778888899999999999955888763 2 333455553 223 3 5788999999998887544
Q ss_pred C---CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 66 F---PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 66 ~---P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
. +..+||..|. .++.+.++.+++-|.-+.
T Consensus 340 ~~~~~~~fRIg~~G-~i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 340 YRDAPSGLRIWCGA-TVEKSDLECLCPWLDWAF 371 (374)
T ss_pred cccCCCceEEecCC-cCCHHHHHHHHHHHHHHH
Confidence 3 4568998886 555677777777665543
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.3 Score=37.72 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecC-CCCH-HHHHHHHhhcCceecCCCCCC---eeeE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSD-VFHI-YRLSSGLNKRGWNTNSLQFPV---GIHI 72 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~-~~~i-~~l~d~L~~rGW~v~~~~~P~---~ihi 72 (143)
||..++-++=..++++++++++++ ||++++++ .-+|.+|..+ ++|- ......+++.|-.+..-+.|- -+||
T Consensus 261 EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRI 339 (383)
T COG0075 261 EGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRI 339 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEE
Confidence 466777777788999999999999 99999965 3356667764 4552 233344455688888877654 4799
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
-.|- .++...+...+.-|.+++.++..
T Consensus 340 GhMG-~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 340 GHMG-NVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred ecCc-cCCHHHHHHHHHHHHHHHHHcCC
Confidence 8886 77778888888888888877765
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.4 Score=36.74 Aligned_cols=86 Identities=7% Similarity=0.021 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEecc------C-----------ceeEEEEecCCCCHHHHHHHHhhcCc-----eec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGT------P-----------ATSVIALGSDVFHIYRLSSGLNKRGW-----NTN 62 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~------p-----------~l~vVaf~~~~~~i~~l~d~L~~rGW-----~v~ 62 (143)
..+++..++++.+++.|++.|.++-+.- | --.+|+|..+ +..++...|+..+. .+.
T Consensus 245 ~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--~~~~~~~~~~~l~~~~~~~s~G 322 (366)
T PRK07582 245 LRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--DAAAAERFVAASRLVVAATSFG 322 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--CHHHHHHHHHhCCcceecccCC
Confidence 4567778999999999999998875542 3 2458999875 34455555554432 221
Q ss_pred CC----C--------CC-CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 63 SL----Q--------FP-VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 63 ~~----~--------~P-~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. . .| .-+|++|- . +..+.+++||+++++.
T Consensus 323 ~~~sl~~~~~~~~~~~~~~liR~svG---l--E~~~dli~dl~~al~~ 365 (366)
T PRK07582 323 GVHTSADRRARWGDAVPEGFVRLSCG---I--EDTDDLVADLERALDA 365 (366)
T ss_pred CccchhhhHHHcCCCCCCCeEEEEec---c--CCHHHHHHHHHHHHhh
Confidence 11 0 12 23676664 2 6789999999999865
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.8 Score=35.88 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCC--CCCCeeeEEEEecccChhHH
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL--QFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~--~~P~~ihi~v~~~h~~~~~~ 84 (143)
.+.+.+..+++.+.|++. |+++. .|+.+.+.+..+ .|-.++.+.|.++|+.+... ..|..+|+++.. ++..
T Consensus 285 ~~~~~~~r~~l~~~L~~~-g~~~~-~~~~~f~~~~~~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~~----~~~~ 357 (370)
T PRK09105 285 RAENAAVREDTIAWLKKK-GYKCT-PSQANCFMVDVK-RPAKAVADAMAKQGVFIGRSWPIWPNWVRVTVGS----EEEM 357 (370)
T ss_pred HHHHHHHHHHHHHHHHHC-CCCcC-CCCCcEEEEeCC-CCHHHHHHHHHHCCcEEecCCCCCCCeEEEEcCC----HHHH
Confidence 345566778888999987 77754 466666656543 46678999999999988322 135678888762 4567
Q ss_pred HHHHHHHHHHH
Q psy10208 85 DKFISDVREEL 95 (143)
Q Consensus 85 ~~fl~Dl~~ai 95 (143)
+.|++-|++.+
T Consensus 358 ~~l~~al~~~~ 368 (370)
T PRK09105 358 AAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHHHh
Confidence 88888777653
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.6 Score=35.45 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=43.4
Q ss_pred eeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 27 LFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 27 ~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+++. .+..+.+.+..+..+-.++++.|.++|..+.... + +..+|+++. +.+.+++|++-|++++
T Consensus 292 ~~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~----~~~~~~~l~~~L~~il 360 (361)
T PRK00950 292 FKVY-PSEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG----TFEENERFLEILKEIV 360 (361)
T ss_pred eeEC-CCcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC----CHHHHHHHHHHHHHHh
Confidence 4443 3455666666666788899999999998885422 2 345788875 2356788888777654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.5 Score=34.85 Aligned_cols=90 Identities=19% Similarity=0.148 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec--CCCCHHHHHHHHhhcCceec-CC--CCCCeeeEEEEeccc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS--DVFHIYRLSSGLNKRGWNTN-SL--QFPVGIHICITHMHT 79 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~-~~--~~P~~ihi~v~~~h~ 79 (143)
+..+.+.+..+++.+.|++. |+... .+..+.+-+.. +..+...+.++|.++|..+- .. ..+..+|+++.
T Consensus 274 ~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---- 347 (369)
T PRK08153 274 EVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---- 347 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC----
Confidence 34455556677788888876 66643 34444554443 23456788999999999883 22 12346788775
Q ss_pred ChhHHHHHHHHHHHHHHHHHc
Q psy10208 80 QPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.+..+.|++=|++++...++
T Consensus 348 ~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 348 PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 358899999999988775543
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.68 Score=38.01 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCeeEecc--Cc--e-eEEEEecCCCCHHHHHHHHhh
Q psy10208 4 VNTTRSIIETVKYIEKELRS-MDGLFIFGT--PA--T-SVIALGSDVFHIYRLSSGLNK 56 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~--p~--l-~vVaf~~~~~~i~~l~d~L~~ 56 (143)
.++.+++.+.++++.++|++ ++|++++++ |. . ++++|..++.+-.++...|.+
T Consensus 258 ~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~ 316 (364)
T PLN02651 258 DYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKE 316 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCC
Confidence 56677888899999999985 789999994 33 3 499998888888899999975
|
|
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.41 Score=41.74 Aligned_cols=87 Identities=17% Similarity=0.335 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecCCCCHHHHHHHHhhcCcee--cCCCCCC----eeeEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSDVFHIYRLSSGLNKRGWNT--NSLQFPV----GIHICI 74 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~~~~i~~l~d~L~~rGW~v--~~~~~P~----~ihi~v 74 (143)
++..+++.+++++++..+++. ||.+.|+-+ +|+.-+.-.. +-.++++|-+++--+ ..++.++ -.|+|+
T Consensus 404 ~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~k--~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~ 480 (519)
T KOG1357|consen 404 RQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPAK--IVAFSREMLERNIGVVVVGFPATPLLESRARFCL 480 (519)
T ss_pred HHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCccc--ccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhh
Confidence 677888999999999999997 999999744 4444333233 345677777765544 4344433 148999
Q ss_pred EecccChhHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREE 94 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~a 94 (143)
.-.|+ .++.+..++-+.+.
T Consensus 481 Sa~ht-~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 481 SASHT-KEDLDRALEVIDRV 499 (519)
T ss_pred ccccc-HHHHHHHHHHHhhh
Confidence 87776 46777666654443
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=2.6 Score=34.90 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC--CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEE
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD--VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~--~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
+..+...+..+.+.+.|++++|+++. .|+-+.+.| +.+ .++-.++.+.|. +.|..+.... .+..+|+++.
T Consensus 293 ~~~~~~~~~~~~~~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 371 (391)
T PRK08361 293 EMRKEYNERRKLVLKRLKEMPHIKVF-EPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA 371 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeec-CCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec
Confidence 33444455666788999998887754 455554444 433 467888998885 5799886532 2457899887
Q ss_pred ecccChhHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
. ..+.+++-++.|++.++
T Consensus 372 ~---~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 372 T---SKEKLIEAMERMEKALE 389 (391)
T ss_pred C---CHHHHHHHHHHHHHHHh
Confidence 4 23566666666666553
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.7 Score=34.16 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
+..+.+.+..+++.+.|+++ |++..+ ....+.|-... +..++.+.|.++|+.+.....|..+||++.. +.+..
T Consensus 243 ~~~~~~~~~r~~l~~~L~~~-~~~~~~--~~~~f~~~~~~-~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~---~~~~~ 315 (330)
T PRK05664 243 RQRERLLAASQRLAALLRRH-GLTPAG--GCALFQWVRTE-DAAALHEFLARRGILTRLFEQPASLRFGLPA---DEADW 315 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcccC--CcceEEEEecC-CHHHHHHHHHHCCeEEEECCCCCeEEEECCC---CHHHH
Confidence 34455566788899999987 665322 22233332222 5678899999999999876667788998873 22456
Q ss_pred HHHHHHHHHH
Q psy10208 85 DKFISDVREE 94 (143)
Q Consensus 85 ~~fl~Dl~~a 94 (143)
++|++=|++.
T Consensus 316 ~~l~~al~~~ 325 (330)
T PRK05664 316 ARLDQALLAY 325 (330)
T ss_pred HHHHHHHHHH
Confidence 6666555544
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.7 Score=37.12 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc-Ch
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT-QP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~-~~ 81 (143)
..+++.+..++|.++|+++.++..+++ -..+++++... ..+.-.+.+.|.++|-.+.... -.+.++|+.+ ++
T Consensus 334 ~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~g----~~l~~~Ppl~it~ 409 (429)
T PRK06173 334 WQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPFG----KLVYIMPPFIISP 409 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEecC----CEEEEeCCccCCH
Confidence 345667788889999987645554544 23334444332 2345688999999997775432 2566777765 68
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELAII 98 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~ 98 (143)
+.++++++-|++++..+
T Consensus 410 ~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 410 DELSQLTSGLLRVLKQE 426 (429)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999998764
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.3 Score=36.28 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEe-c--cCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIF-G--TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vl-g--~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
..+++.+.+++++++++++ +.... . .+..+.+.|..+. +..++.++|.++|..+... .+..+|+++...+ +.+
T Consensus 291 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~-~~~~lRi~~~~~~-t~~ 366 (379)
T TIGR00707 291 LLENVKEKGDYFKERLEEL-GKNYPNKEVRGKGLMLGIELEA-PCKDIVKKALEKGLLVNCA-GPKVLRFLPPLII-TKE 366 (379)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhCCCCccccCceEEEEEecC-cHHHHHHHHHHCCcEEeeC-CCCEEEEECCCcC-CHH
Confidence 3455666778888888765 33221 1 1233345554322 3568899999999988753 2456888765434 467
Q ss_pred HHHHHHHHHHHH
Q psy10208 83 VADKFISDVREE 94 (143)
Q Consensus 83 ~~~~fl~Dl~~a 94 (143)
.++++++-|+++
T Consensus 367 ~i~~~~~~l~~~ 378 (379)
T TIGR00707 367 EIDEAVSALEEA 378 (379)
T ss_pred HHHHHHHHHHHh
Confidence 888888888765
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.93 Score=36.70 Aligned_cols=84 Identities=12% Similarity=0.134 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhc-CceecCCC---CCCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~v~~~h 78 (143)
.+..+.+.+..+++.+.|++. |+.+...+ .+.+.|.. +..+-.++.++|.++ |..+.... .+..+|+++ . +
T Consensus 275 ~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a-~ 350 (363)
T PF00155_consen 275 EELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-A-S 350 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-G-C
T ss_pred ccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-c-c
Confidence 456777888899999999998 99988766 55565543 322567899999998 98775522 366799998 3 4
Q ss_pred cChhHHHHHHHHH
Q psy10208 79 TQPGVADKFISDV 91 (143)
Q Consensus 79 ~~~~~~~~fl~Dl 91 (143)
.+++.++++++-|
T Consensus 351 ~~~e~~~~~~~~l 363 (363)
T PF00155_consen 351 HSEEDLEEALERL 363 (363)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhC
Confidence 4567787777643
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=4.7 Score=33.78 Aligned_cols=91 Identities=10% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC--CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD--VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICI 74 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~--~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v 74 (143)
.+..+...+.++.+.+.|++++|+++. .|+-..+.| +.+ ..+..++.++|. +.|..+.... .+..+||++
T Consensus 304 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~ 382 (405)
T PRK06207 304 KDRIARHQAIRDDLLRVLRGVEGVFVR-APQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNF 382 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceec-CCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEe
Confidence 344555666677788889888887754 454333433 333 356788999996 6898876543 245789998
Q ss_pred EecccChhHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. ..+.+++=++-|+++++..
T Consensus 383 ~~---~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 383 SQ---DHAAAVAAAERIAQLIERY 403 (405)
T ss_pred cC---CHHHHHHHHHHHHHHHHHh
Confidence 74 2456666666676666544
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=4.6 Score=33.58 Aligned_cols=83 Identities=7% Similarity=-0.004 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChhHHH
Q psy10208 10 IIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPGVAD 85 (143)
Q Consensus 10 ~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~~~ 85 (143)
..+..+.+.+.|+++ |+++. .|.-..+.| +.+..|..++.+.|.+.|+.+.... .+..+||++. + .++.++
T Consensus 305 ~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~-~~~~~~ 379 (394)
T PRK06836 305 YKRNRDLLYDGLTEL-GFECV-KPQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--V-DTETIE 379 (394)
T ss_pred HHHHHHHHHHHHHhC-CCEee-cCCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--C-CHHHHH
Confidence 345566777888887 67654 344344444 3334577888999999999886653 3567999987 2 468888
Q ss_pred HHHHHHHHHHHH
Q psy10208 86 KFISDVREELAI 97 (143)
Q Consensus 86 ~fl~Dl~~ai~~ 97 (143)
+.++-|+++++.
T Consensus 380 ~~i~~l~~~l~~ 391 (394)
T PRK06836 380 RSLPAFEKLAKE 391 (394)
T ss_pred HHHHHHHHHHHH
Confidence 888888888753
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=91.64 E-value=3.6 Score=34.28 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC-----C-CHHHHHHHHhhcCceecCCC-----CCCeeeEEEE
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV-----F-HIYRLSSGLNKRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~-----~-~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
+.+.+..+.+.+.|++++|+++. .|+-..+.| +.+. . +...+.+.+.++|+.+.... .+..+|+++.
T Consensus 304 ~~~~~~r~~~~~~L~~~~~~~~~-~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~ 382 (404)
T PRK09265 304 GRLYEQRDRAWELLNAIPGVSCV-KPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL 382 (404)
T ss_pred HHHHHHHHHHHHHHhcCCCCccc-CCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC
Confidence 35666677788889888887654 455444444 3221 1 23346788899999885542 2456888884
Q ss_pred ecccChhHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+.+.+++.++.|++++...
T Consensus 383 ---~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 383 ---PRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred ---CCHHHHHHHHHHHHHHHHHh
Confidence 34578888888888877643
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.9 Score=35.93 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEec----cCceeEEEEecCC--CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFG----TPATSVIALGSDV--FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg----~p~l~vVaf~~~~--~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
.++..+.+.++.++|++++ ..+++ ...+..|-|..+. .+..++...|.++|=.+... .+..+|++.+. .++
T Consensus 309 ~~~~~~~~~~~~~~L~~l~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-~~~~lRi~p~l-~~t 385 (401)
T TIGR01885 309 AENAEKLGEIFRDQLKKLP-KPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPT-HGNIIRLAPPL-VIT 385 (401)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEec-CCCEEEEeCCc-cCC
Confidence 3456667889999999883 34433 2333333344332 35678999999999776432 24567776643 445
Q ss_pred hhHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREEL 95 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai 95 (143)
++.++++++-|++++
T Consensus 386 ~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 386 EEQLDEGLEIIKKVI 400 (401)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788999998888765
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=4 Score=34.40 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-C-------CCHHHHHHHHhhcC-cee-cCCCCCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-V-------FHIYRLSSGLNKRG-WNT-NSLQFPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-~-------~~i~~l~d~L~~rG-W~v-~~~~~P~~ihi~v 74 (143)
..+...+.++++.+.|++. |+.+. .|+...+.| ..+ . .+..++++.|.++| +.+ +...++..+||++
T Consensus 305 ~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~ 382 (410)
T PRK06290 305 IREKYSRRLDKLVKILNEV-GFKAE-MPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSV 382 (410)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCeec-CCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEE
Confidence 4455566777888999987 77654 455555555 332 1 36778999998874 544 3333445799999
Q ss_pred EecccChhHHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.-...+++-.++|++-|++++..|.
T Consensus 383 ~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 383 TFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred EcccccccchhHHHHHHHHHHhhcc
Confidence 8555567889999999998877653
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.45 E-value=4.2 Score=33.40 Aligned_cols=88 Identities=9% Similarity=0.001 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec---CCCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEEe
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS---DVFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICITH 76 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~---~~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~~ 76 (143)
..+...+.++++.+.|+++ |+++. .|+...+.|-. ...+-.++++.|. ++|+.+.... .+..+||++..
T Consensus 281 ~~~~~~~~~~~~~~~L~~~-~~~~~-~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~ 358 (378)
T PRK07682 281 MRDSYRKRRNFFVTSFNEI-GLTCH-VPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT 358 (378)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCccC-CCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC
Confidence 3444566777888999988 77643 46555555542 2467788998875 7899887532 24578999874
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+.+.+++.++-|++.++.+
T Consensus 359 ---~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 359 ---SLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred ---CHHHHHHHHHHHHHHHhhc
Confidence 3578888888888877644
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.92 Score=37.67 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeEEEEecCCC-CHHHHHHHHh--hcCceecCCC----CC---------
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSVIALGSDVF-HIYRLSSGLN--KRGWNTNSLQ----FP--------- 67 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~vVaf~~~~~-~i~~l~d~L~--~rGW~v~~~~----~P--------- 67 (143)
...++..++++.+++.|++.|++..+..| .-.+++|..+.. ....+.+.|+ ..++.+.... .|
T Consensus 249 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~ 328 (366)
T PRK08247 249 LRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIP 328 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCC
Confidence 45567788999999999999999866566 778999975431 1223444443 2233221110 11
Q ss_pred -----------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 68 -----------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 68 -----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.-+|++|- -+.++.+++||+.|++.+
T Consensus 329 ~~~r~~~gi~~~~~R~svG-----lE~~~dl~~dl~~al~~~ 365 (366)
T PRK08247 329 EEIRIANGVCNRLLRFSVG-----IENVEDLIADLKQAFKQV 365 (366)
T ss_pred HHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhhc
Confidence 12344443 378999999999998753
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=3.5 Score=34.65 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEecc------C-----------ceeEEEEecCCCCHHHHHHHHhhcCc-----eec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGT------P-----------ATSVIALGSDVFHIYRLSSGLNKRGW-----NTN 62 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~------p-----------~l~vVaf~~~~~~i~~l~d~L~~rGW-----~v~ 62 (143)
..+++..+++..+++.|++.|.+.-+-- | ..++|+|..++ ..++..-+...+. .+.
T Consensus 251 ~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~--~~~~~~f~~~l~l~~~~~s~G 328 (390)
T PRK08064 251 VRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS--EEAVRQFVSHVKLPVFAVSLG 328 (390)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC--HHHHHHHHHhCCcceEcccCC
Confidence 5667778888888888888765532211 1 23589998754 2344444443332 222
Q ss_pred CC-------------C----------C-CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 63 SL-------------Q----------F-PVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 63 ~~-------------~----------~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.. . . +.-+|++|-- +..+.+++||.++++.+++-|
T Consensus 329 ~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGl-----e~~~dli~dl~~Al~~~~~~~ 387 (390)
T PRK08064 329 AVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGL-----ENVDDLIADFEQALSYVEEPV 387 (390)
T ss_pred CCcceeECCcccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhcccCC
Confidence 00 0 1 1235666643 689999999999999875544
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.8 Score=36.40 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
...++..++++++++.|++.|+++-+--|. -.+|+|..++ -....+.+.|+- .|+.+..
T Consensus 258 ~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~ 337 (391)
T TIGR01328 258 IRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGD 337 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCC
Confidence 456777889999999999999887654342 3489998752 235666677763 3554432
Q ss_pred CC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 64 LQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 64 ~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. .| .-+|++|-- |.++.+++||+.|++.
T Consensus 338 ~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al~~ 390 (391)
T TIGR01328 338 AETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL-----EDADDLIADLKQALDA 390 (391)
T ss_pred CcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHHHhh
Confidence 21 01 124555542 7899999999999874
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=2.6 Score=35.10 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=37.6
Q ss_pred CHHHHHHHHhhcCceecCCCCC------CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 46 HIYRLSSGLNKRGWNTNSLQFP------VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 46 ~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+...+.++|.++|+.+.....| ..+|+++.. +.+++.+++|++-|+++++
T Consensus 343 ~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~-~~t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 343 TAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRA-SHTNDEIKRLCSLLKEILD 398 (402)
T ss_pred HHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCc-cCCHHHHHHHHHHHHHHHH
Confidence 4567899999999998765332 357888764 3457899999999988764
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.94 E-value=5.3 Score=32.64 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEEecccCh
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICITHMHTQP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~~~h~~~ 81 (143)
.+.+.+.++++.+.|++++|+.+. .|..+-+-++.. .+-.++.+.|.++|..+.... + +..+||++.. .
T Consensus 266 ~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~----~ 339 (356)
T PRK08056 266 WQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCE-RPDIDLQRALLTQRILIRSCANYPGLDSRYYRVAIRS----A 339 (356)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcC-CChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEcC----H
Confidence 455667778889999999888754 455544444433 234678999999999876543 1 3468888763 3
Q ss_pred hHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREE 94 (143)
Q Consensus 82 ~~~~~fl~Dl~~a 94 (143)
+..+.|++-|++.
T Consensus 340 ~~~~~l~~~l~~~ 352 (356)
T PRK08056 340 AENERLLAALRNV 352 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 5677888777764
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=4.1 Score=33.02 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
+.+..++..+..+.+.+.|++. |+.+. .+..+.+-+.. +.+..++.+.|.+.|..+.... +.++||++.. .+
T Consensus 265 ~~~~~~~~~~~r~~~~~~L~~~-~~~~~-~~~g~~i~i~l-~~~~~~~~~~l~~~gI~v~~~~-~~~iRi~~~~----~~ 336 (352)
T PRK03321 265 LLERVDAVVAERDRVRAALRAA-GWTVP-PSQANFVWLPL-GERTADFAAAAAEAGVVVRPFA-GEGVRVTIGA----PE 336 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCCCEEEEeC-CCCHHHHHHHHHHCCEEEEccC-CCcEEEeeCC----HH
Confidence 3445566677777888999887 66643 34445444444 2357789999999999987642 4569998853 36
Q ss_pred HHHHHHHHHHHHH
Q psy10208 83 VADKFISDVREEL 95 (143)
Q Consensus 83 ~~~~fl~Dl~~ai 95 (143)
..+.|++-|+++.
T Consensus 337 ~~~~~~~al~~~~ 349 (352)
T PRK03321 337 ENDAFLRAARAWR 349 (352)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888777654
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=8.4 Score=31.71 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCCCCHHHHHHHHhh------cCceecCCC----C----CCee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDVFHIYRLSSGLNK------RGWNTNSLQ----F----PVGI 70 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L~~------rGW~v~~~~----~----P~~i 70 (143)
..+...+..+.+.+.|++++|+.+ ..|+...+.| +.+..+..++++.|.+ .|..+.... . +..+
T Consensus 290 ~~~~~~~~~~~l~~~L~~~~~~~~-~~p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~i 368 (397)
T PRK07568 290 VREEYKKRRDILYEELNKIPGVVC-EKPKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEI 368 (397)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcee-cCCCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeE
Confidence 344556677788899998887764 3455544443 4433366778888754 587766521 1 2468
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
|+++.. ..+..++.++-|+++++...
T Consensus 369 Rls~~~---~~~~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 369 RIAYVL---NEEDLKRAMEILKEALEKYN 394 (397)
T ss_pred EEEEeC---CHHHHHHHHHHHHHHHHHhh
Confidence 888762 34788888888888876544
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=90.56 E-value=7 Score=32.57 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC------CCHHHHHHHH-hhcCceecCCC---CCCeeeEEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV------FHIYRLSSGL-NKRGWNTNSLQ---FPVGIHICIT 75 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~------~~i~~l~d~L-~~rGW~v~~~~---~P~~ihi~v~ 75 (143)
..+.+.+..+.+.+.|+.++|+.+......+-+-++.+. .|-.++++.| ++.|-.+.... .+..+|+++.
T Consensus 303 ~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~ 382 (403)
T TIGR01265 303 KISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITIT 382 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEec
Confidence 445566677788899998888875443333333333321 2677888885 67899876543 3667999997
Q ss_pred ecccChhHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. .+.+++-++-|++.++
T Consensus 383 ~~---~~~l~~~l~~l~~~~~ 400 (403)
T TIGR01265 383 VP---ESMLEEACSRIKEFCE 400 (403)
T ss_pred CC---HHHHHHHHHHHHHHHH
Confidence 42 3566666666665553
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=5.5 Score=32.76 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC-C-----CHHHHHHHH-hhcCceecCCC-C--CCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV-F-----HIYRLSSGL-NKRGWNTNSLQ-F--PVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~-~-----~i~~l~d~L-~~rGW~v~~~~-~--P~~ihi~v 74 (143)
..+...+.++.+.+.|++++|+.+.. |+...+.| .... . +-.++.+.| ++.|..+.... + +..+|+++
T Consensus 293 ~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~ 371 (393)
T PRK05764 293 MRQAFEERRDLMVDGLNEIPGLECPK-PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSY 371 (393)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcccC-CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEe
Confidence 34445566778899999998888765 54433333 2221 1 236777776 56799875432 2 46789988
Q ss_pred EecccChhHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. ..+.+++.++-|++++.+
T Consensus 372 ~~---~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 372 AT---SLEDLEEGLERIERFLES 391 (393)
T ss_pred cC---CHHHHHHHHHHHHHHHHh
Confidence 63 357888888888877654
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.8 Score=38.83 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
.|++-+++++++|+.|++.|.+. ||++++. -++-+|-.+..+++=......|.+-|=.++... .|.++
T Consensus 432 efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGi 510 (586)
T PLN02271 432 EYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGV 510 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcc
Confidence 47889999999999999999997 9999853 345455454445566788889998898887653 35678
Q ss_pred eEEEEecccChhH
Q psy10208 71 HICITHMHTQPGV 83 (143)
Q Consensus 71 hi~v~~~h~~~~~ 83 (143)
||-.. ..|++++
T Consensus 511 RiGT~-alT~rG~ 522 (586)
T PLN02271 511 RIGTP-AMTSRGC 522 (586)
T ss_pred cccCH-HHHhcCC
Confidence 88553 3444433
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=7.8 Score=31.99 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhC----CCeeEeccCceeEEE--Eec-CCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 10 IIETVKYIEKELRSM----DGLFIFGTPATSVIA--LGS-DVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 10 ~~~~a~~l~~~i~~i----~g~~vlg~p~l~vVa--f~~-~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
.-+..+++.++|+++ +.+..+ .+.-.+++ |.. +..+..++.++|.++|-.+... .+..+|++.+. ..+++
T Consensus 304 ~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~-~~~~lRi~~~~-~~~~~ 380 (400)
T PTZ00125 304 AQRLGEVFRDGLKELLKKSPWVKEI-RGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPT-HDNIIRFAPPL-VITKE 380 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEE-ecccEEEEEEEccCcchHHHHHHHHHHHCCeEEeec-CCCEEEEECCc-cCCHH
Confidence 334566677777664 222111 23333333 332 2345678899999999777532 34557776543 34578
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q psy10208 83 VADKFISDVREELAIIMQN 101 (143)
Q Consensus 83 ~~~~fl~Dl~~ai~~~~~~ 101 (143)
.++++++-|++++..+..+
T Consensus 381 ~i~~~l~~l~~~l~~~~~~ 399 (400)
T PTZ00125 381 QLDQALEIIKKVLKSFDSN 399 (400)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887655
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.06 E-value=4.8 Score=32.91 Aligned_cols=81 Identities=7% Similarity=0.036 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----CCCeeeEEEEecccCh
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHMHTQP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~h~~~ 81 (143)
.+...+..+.+.+.|++. |+.+. .|+.+.+.|-....+..++.+.|.++|..+.... .+..+||++.. .+
T Consensus 278 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~ 352 (364)
T PRK07865 278 RERYARRRAVLRPALEAA-GFRVD-HSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA---TD 352 (364)
T ss_pred HHHHHHHHHHHHHHHHHc-CCccc-CCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC---CH
Confidence 344455667778888886 77644 4554554443324466788999999999885532 35578998863 24
Q ss_pred hHHHHHHHHHH
Q psy10208 82 GVADKFISDVR 92 (143)
Q Consensus 82 ~~~~~fl~Dl~ 92 (143)
+.++++++.|+
T Consensus 353 ~~~~~~~~~l~ 363 (364)
T PRK07865 353 ERIAAAVERLA 363 (364)
T ss_pred HHHHHHHHHhh
Confidence 66666666553
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=89.98 E-value=6.8 Score=32.04 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEEecccCh
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICITHMHTQP 81 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~~~h~~~ 81 (143)
+.+.+..+.+.+.|++++|+.+.. +..+-+-++... +..++.++| ++.|+.+.... .+..+||++...
T Consensus 270 ~~~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~~~~~-~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~---- 343 (360)
T PRK07392 270 AWLPPAREALFQGLASLPGLTPLP-SAANFLLVQSQG-SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTE---- 343 (360)
T ss_pred HHHHHHHHHHHHHHHhCCCcEECC-CCCCEEEEEcCC-CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCH----
Confidence 345556777889999998988754 444444344332 567788775 67899886543 134688888742
Q ss_pred hHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREE 94 (143)
Q Consensus 82 ~~~~~fl~Dl~~a 94 (143)
...+.|.+-|++.
T Consensus 344 ~~~~~l~~al~~~ 356 (360)
T PRK07392 344 AENQRLLEALAAI 356 (360)
T ss_pred HHHHHHHHHHHHH
Confidence 2345555555443
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=3.3 Score=39.29 Aligned_cols=76 Identities=7% Similarity=0.023 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+|-++++++++..|.+|+++|++ .|+++..+|-+.-|.+.... +..++..+-.++|-++-... ...+.+++...++
T Consensus 352 ~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~~~-~~~~~~~~a~~~~~n~r~~~-~~~~~~s~de~~~ 427 (954)
T PRK12566 352 EGLKRIAQRVHRLTAILAAGLEA-KGIKRLNRHFFDTLTLEVGG-AQAAIIESAEAARINLRILG-RGRLGVSLDETCD 427 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCccceEEEEccC-CHHHHHHHHHHCCCeeEEeC-CCeEEEEeCCCCC
Confidence 58899999999999999999999 69999988766666665431 35567777777888877653 3346667765443
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=5.3 Score=33.60 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTN 62 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~ 62 (143)
...+++..++++.|++.|++.|.++-+.-|. -.+|+|..++ .....+.+.|+- .|+.+.
T Consensus 249 ~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G 328 (386)
T PRK08045 249 VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLG 328 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCC
Confidence 3467888999999999999998886553221 2489998753 224566677763 343332
Q ss_pred CCC-------------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SLQ-------------F-----------PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~~-------------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
... . +.-+|++|-- |.++.+++||.+|++...+
T Consensus 329 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al~~~~~ 385 (386)
T PRK08045 329 GVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI-----EDGEDLIADLENGFRAANK 385 (386)
T ss_pred CCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHHHHHhhc
Confidence 210 0 1234666542 7899999999999986643
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.7 Score=35.28 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecCCCCHHHHHHHHhhcCcee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSDVFHIYRLSSGLNKRGWNT 61 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~~~~i~~l~d~L~~rGW~v 61 (143)
-.++.+++.+.++++.++|++ +|++++++|. .++++|..++.+..++...|++ |-.+
T Consensus 259 ~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~i~v 318 (353)
T TIGR03235 259 AQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDGVNSEALIVNLRA-DAAV 318 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCCcCHHHHHHHHhC-CeEE
Confidence 346678888899999999988 6999998653 3478888777888899999976 5444
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=7.5 Score=32.07 Aligned_cols=86 Identities=8% Similarity=0.174 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCcee-EEEEecC----CCCHHHHHHHH-hhcCceecCCC-------CCCeee
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATS-VIALGSD----VFHIYRLSSGL-NKRGWNTNSLQ-------FPVGIH 71 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~-vVaf~~~----~~~i~~l~d~L-~~rGW~v~~~~-------~P~~ih 71 (143)
+..+...+..+.+.+.|++. |+++. .|+-. .+.+... ..+..++++.| +++|+.+.... .+..+|
T Consensus 286 ~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iR 363 (387)
T PRK08912 286 GMRADLARSRDRLAAGLRRI-GFPVL-PSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVR 363 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccc-CCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEE
Confidence 34455667777888999988 77765 34433 3333433 25777889887 56899876532 135689
Q ss_pred EEEEecccChhHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+++... .+.+++-++-|++++
T Consensus 364 l~~~~~---~~~l~~~l~rl~~~l 384 (387)
T PRK08912 364 FCFAKR---DATLDEAVERLAAAR 384 (387)
T ss_pred EEEeCC---HHHHHHHHHHHHHHH
Confidence 998842 356666666666544
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=4 Score=34.26 Aligned_cols=94 Identities=7% Similarity=0.027 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEeccCc--eeEEEEecCC-C--CHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGTPA--TSVIALGSDV-F--HIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~p~--l~vVaf~~~~-~--~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+.++..+..+++.++|+++. .+.+++++. -..+.+.... + ....+.+.|.++|-.+... .|+.+|++....+
T Consensus 304 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-g~~~lRl~p~~~~- 381 (406)
T PRK12381 304 MLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA-GPNVVRFAPALNI- 381 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC-CCCEEEEeCCccC-
Confidence 44566677888888888762 233344431 1233443221 1 2457788999999777532 3456777665434
Q ss_pred ChhHHHHHHHHHHHHHHHHHcC
Q psy10208 80 QPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+++.++++++-|++++..+.+.
T Consensus 382 t~~~i~~~~~~l~~~l~~~~~~ 403 (406)
T PRK12381 382 SEEEITTGLDRFARACERFVSR 403 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999877654
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=89.17 E-value=6.3 Score=32.24 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----CCeeeEEEEecccC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----PVGIHICITHMHTQ 80 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----P~~ihi~v~~~h~~ 80 (143)
..+...+..+++.+.|++. |+.+ ..|+-+.+.|...+.+..++.+.|.++|+.+..... +..+||++.. +
T Consensus 271 ~~~~~~~~~~~~~~~L~~~-g~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~---~ 345 (357)
T TIGR03539 271 QKARYAARRAQLKPALEKA-GFRI-DHSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA---T 345 (357)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCC-cCCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC---C
Confidence 3344456667788888886 6664 456666666655444677899999999998876431 3468888863 2
Q ss_pred hhHHHHHHH
Q psy10208 81 PGVADKFIS 89 (143)
Q Consensus 81 ~~~~~~fl~ 89 (143)
.+.+++.++
T Consensus 346 ~~~i~~~~~ 354 (357)
T TIGR03539 346 DERIAAAVA 354 (357)
T ss_pred HHHHHHHHH
Confidence 344444443
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=89.05 E-value=9.6 Score=31.61 Aligned_cols=88 Identities=9% Similarity=0.110 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-C--CCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEEe
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-V--FHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICITH 76 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-~--~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~~ 76 (143)
.+...+.++++.+.|++. |+.+. .|+-..+.| +.+ . .+-.++.++| .++|+.+.... .+..+|+++..
T Consensus 293 ~~~~~~~~~~~~~~l~~~-~~~~~-~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~ 370 (391)
T PRK07309 293 KKEYIKRRDYIIEKMTDL-GFKII-KPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA 370 (391)
T ss_pred HHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 344455667788888887 67654 455444444 332 2 2556788764 57899886543 14578998874
Q ss_pred cccChhHHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..+.+++.++.|++++++++
T Consensus 371 ---~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 371 ---SMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred ---CHHHHHHHHHHHHHHHHhhc
Confidence 24688888888888876553
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=4.6 Score=33.22 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhhC-CCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 7 TRSIIETVKYIEKELRSM-DGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i-~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
.+++.+..+++.+++.++ ..+..+.+ +....+.+.. ..+..++..+|.++|..+.... +..+|++....+ +++.
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~-~~~~~~~~~~l~~~Gv~v~~~~-~~~lRi~~~~~~-~~~~ 380 (396)
T PRK02627 304 LENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIEL-DRPAAEIVKKALEKGLLINVTG-DNVLRLLPPLII-SKEE 380 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEe-cCcHHHHHHHHHHCCeEEeecC-CCEEEEECCccc-CHHH
Confidence 445555666677766654 11211211 2223444443 2356789999999998886532 345777654333 4689
Q ss_pred HHHHHHHHHHHHHHH
Q psy10208 84 ADKFISDVREELAII 98 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~~ 98 (143)
++++++-|+++++.+
T Consensus 381 i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 381 IDEAVDRLEEVLKEL 395 (396)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998887653
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=88.92 E-value=10 Score=31.49 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC---CCHHHH-HHHHhhcCceecCCC-C----CCeeeEEE
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV---FHIYRL-SSGLNKRGWNTNSLQ-F----PVGIHICI 74 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~---~~i~~l-~d~L~~rGW~v~~~~-~----P~~ihi~v 74 (143)
+..+.+.+..+.+.+.|++++|+++ ..|..+.+.| ..+. .+-.++ ...|.++|..+.... + +..+||++
T Consensus 296 ~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~ 374 (398)
T PRK08363 296 EYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF 374 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEe-cCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe
Confidence 4455667777888899999888774 4577777777 3332 233444 455789999875432 1 34688888
Q ss_pred EecccChhHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. ..+..++.++-|++.+..
T Consensus 375 ~~---~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 375 LP---PVEILEEAMDRFEEFMRE 394 (398)
T ss_pred cC---CHHHHHHHHHHHHHHHHH
Confidence 53 235666677777666543
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.88 E-value=7.6 Score=31.56 Aligned_cols=80 Identities=25% Similarity=0.300 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCC---CCCCeeeEEEEecccChhHH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL---QFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~---~~P~~ihi~v~~~h~~~~~~ 84 (143)
+...+..+.+.+.+++. |+.+. .+..+.+.+.. ..+-.++.+.|.++|..+... ..+..+||++.. .+..
T Consensus 276 ~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~-~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~----~~~~ 348 (359)
T PRK03158 276 EKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDT-GRDANELFEALLKKGYIVRSGAALGFPTGVRITIGL----KEQN 348 (359)
T ss_pred HHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEEC-CCCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecCC----HHHH
Confidence 33445566677888887 77764 34444444433 346678999999999877663 235678888762 4678
Q ss_pred HHHHHHHHHH
Q psy10208 85 DKFISDVREE 94 (143)
Q Consensus 85 ~~fl~Dl~~a 94 (143)
+.|++-|++.
T Consensus 349 ~~l~~al~~~ 358 (359)
T PRK03158 349 DKIIELLKEL 358 (359)
T ss_pred HHHHHHHHHh
Confidence 8888877664
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=88.85 E-value=4.5 Score=34.80 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
.|++-+++++.+++.|+++|.+. |++++. |-++-+|-.+..++|=-.+...+..-+-.++.-+ .|.++
T Consensus 318 efk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGi 396 (477)
T KOG2467|consen 318 EFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGI 396 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCce
Confidence 48889999999999999999998 999984 3567677777777776666666666666555543 37788
Q ss_pred eEEEEecccChhH
Q psy10208 71 HICITHMHTQPGV 83 (143)
Q Consensus 71 hi~v~~~h~~~~~ 83 (143)
||- +|..++++.
T Consensus 397 RiG-tPAmTsRG~ 408 (477)
T KOG2467|consen 397 RIG-TPAMTSRGF 408 (477)
T ss_pred ecc-chhhcccCc
Confidence 983 456665443
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=5.9 Score=34.02 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecC----CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSD----VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~----~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~ 77 (143)
+.++..+..+++.++|+++.++..+++ .-+..+-|... ......+.++|.++|..+... ...+++ +|+
T Consensus 347 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~--~~~lr~--~Pp 422 (445)
T PRK09221 347 LFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT--GDTIAL--SPP 422 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec--CCEEEE--ECC
Confidence 456677778888888888744433333 22333444432 112457889999999877532 233444 444
Q ss_pred c-cChhHHHHHHHHHHHHHHHH
Q psy10208 78 H-TQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h-~~~~~~~~fl~Dl~~ai~~~ 98 (143)
. .+++.++++++-|++++.++
T Consensus 423 l~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 423 LIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh
Confidence 3 35789999999999998765
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=88.51 E-value=6.1 Score=32.77 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEE--ecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIAL--GSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf--~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
..++..+.++++.++|++++ +..+++ +.-.++.| ..+..+..++++.|.++|=.+... .+..+|++... ..++
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~-~~~~lR~~p~~-~~t~ 385 (401)
T PRK00854 309 MIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDT-HDHTIRLAPPL-VITR 385 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecC-CCCEEEEeCCc-ccCH
Confidence 34566667888889998873 333322 33334444 333345678999999999776431 23456776543 3356
Q ss_pred hHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREEL 95 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai 95 (143)
+.++++++-|++++
T Consensus 386 e~i~~~i~~l~~~l 399 (401)
T PRK00854 386 EQVDWALEQIAKVL 399 (401)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999888775
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=8.3 Score=31.73 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhhC----CCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 6 TTRSIIETVKYIEKELRSM----DGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i----~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
..+++.+..+++++.+.++ +.+.-+.. .-..+.+.. ..+...+.+++.++|+.+... .+..+|++... +.+.
T Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~-~~~~lR~~~~~-~~t~ 361 (375)
T PRK04260 286 FLEQALENGNYLQEQLQKALQDKETVTTVRG-LGYMIGIET-TADLSQLVEAARDKGLIVLTA-GTNVIRLLPPL-TLTK 361 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeEEec-cceEEEEEe-cCcHHHHHHHHHhCCCEEecC-CCCEEEEcCCC-ccCH
Confidence 4455566666666666543 21111111 122333333 235678999999999988543 34568887754 4457
Q ss_pred hHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREE 94 (143)
Q Consensus 82 ~~~~~fl~Dl~~a 94 (143)
+.++++++.|+++
T Consensus 362 ~~i~~~l~~l~~~ 374 (375)
T PRK04260 362 EEIEQGIAILSEV 374 (375)
T ss_pred HHHHHHHHHHHHh
Confidence 8899999888765
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=88.37 E-value=3.9 Score=34.18 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeE--------------eccC---ceeEEEEecCCCC-HHHHHHHHhhcC--ceecCC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFI--------------FGTP---ATSVIALGSDVFH-IYRLSSGLNKRG--WNTNSL 64 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~v--------------lg~p---~l~vVaf~~~~~~-i~~l~d~L~~rG--W~v~~~ 64 (143)
.+.++.-+++..+++.|++.|.+.- .++. ..++|+|...+.+ ..++.+.|+..+ +.+...
T Consensus 244 ~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~ 323 (378)
T TIGR01329 244 IRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSV 323 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCC
Confidence 4556667777778877777665532 2221 2379999886555 678888886543 222111
Q ss_pred -------------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 65 -------------QF-----------PVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 65 -------------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. +.-+|++|-- |.++.+++||+.+++.+
T Consensus 324 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 324 NSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI-----EDVDDLISDLDIAFVTA 376 (378)
T ss_pred CceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhc
Confidence 01 1134565542 78999999999998753
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=3.8 Score=34.49 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhC---CCee-EeccCceeEEEEecCC---CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecc
Q psy10208 6 TTRSIIETVKYIEKELRSM---DGLF-IFGTPATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i---~g~~-vlg~p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h 78 (143)
+.+++.+..++|.++|+++ .++. +-|. ..++++.... -.+...+..+.++|..+... .++.+|+.....|
T Consensus 299 l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG~--Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~-~~~~lR~~p~l~~ 375 (395)
T PRK03715 299 FLEGVRARGEYLKEKLLELSEERGLEGERGE--GLLRALLLGKDIGPQIVEKARDMQPDGLLLNAP-RPNLLRFMPALNV 375 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcCeEEcc--eeEEEEEecCchHHHHHHHHHhccCCCEEEeec-CCCEEEEeCCccc
Confidence 4566677788888888764 1232 2232 3344544322 12233334444459887543 3567888776544
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAII 98 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.++.+++-|+++++.+
T Consensus 376 -t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 376 -TTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred -CHHHHHHHHHHHHHHHHhh
Confidence 5789999999999998764
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=12 Score=30.66 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----CCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----PVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----P~~ihi~v~~~h 78 (143)
.+..+...+..+.+.+.|++++|+.+. .|+.+-+-++.++ --++.+.|.++|..+..... +..+|+++..
T Consensus 264 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~--~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~~-- 338 (354)
T PRK06358 264 KKTIQWIKEEKDFLYNGLSEFKGIKVY-KPSVNFIFFKLEK--PIDLRKELLKKGILIRSCSNYRGLDENYYRVAVKS-- 338 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEc-CCcceEEEEEcCc--hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCC--
Confidence 344555666778889999998887654 5666655555543 35889999999988866421 2458888764
Q ss_pred cChhHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREEL 95 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai 95 (143)
++..+.|++-|+..+
T Consensus 339 --~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 339 --REDNKKLLKALEVIL 353 (354)
T ss_pred --HHHHHHHHHHHHHHh
Confidence 367888888777654
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.60 E-value=4.5 Score=34.50 Aligned_cols=86 Identities=19% Similarity=0.319 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhcCceecCCCCC------CeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQFP------VGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~~~ 77 (143)
+.-++..++++++...++.. |+.+. +...||+.+-. +....-.+++.|.++|-.+.+...| +-+|++++..
T Consensus 294 ~~r~~L~~~~~~~~~~~~~~-~~~~~-~s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ 371 (388)
T COG0156 294 ERRERLQELAAFFRSLLKAL-GLVLL-PSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAA 371 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCccC-CCCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCC
Confidence 34456667777777665554 66653 33444544332 2234668889999999988876443 2389999998
Q ss_pred ccChhHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVRE 93 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ 93 (143)
|+ .+.++.+++-|.+
T Consensus 372 ht-~~~I~~l~~~l~~ 386 (388)
T COG0156 372 HT-EEDIDRLAEALSE 386 (388)
T ss_pred CC-HHHHHHHHHHHHh
Confidence 86 5677777765544
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=5.4 Score=33.62 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC----CCHHHHHHHHhhc--Cce
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV----FHIYRLSSGLNKR--GWN 60 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~----~~i~~l~d~L~~r--GW~ 60 (143)
...+++..++|..|++.|++.|++.-+..|. -.+++|..+. .+...+.+.|+.. |+.
T Consensus 262 ~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s 341 (394)
T PRK07050 262 QVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWS 341 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccc
Confidence 4567778889999999999988877554332 2467887642 3567778888764 454
Q ss_pred ecCCC---CCC---------------eeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 61 TNSLQ---FPV---------------GIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 61 v~~~~---~P~---------------~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+.... .|. -+|++|- -|..+.+++||.++++.+
T Consensus 342 ~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svG-----lE~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 342 WGGACSLAMPYDVASMRTAKWPHRGTLVRLYIG-----LEDEADLIADLEQALEAA 392 (394)
T ss_pred cCCccceEeeCcccccchhhcCCCCCEEEEEeC-----cCCHHHHHHHHHHHHHHh
Confidence 43221 021 2455554 378999999999998765
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=6.1 Score=33.02 Aligned_cols=91 Identities=10% Similarity=0.096 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------------ceeEEEEecCC--CCHHHHHHHHh--hcCcee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-----------------ATSVIALGSDV--FHIYRLSSGLN--KRGWNT 61 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------------~l~vVaf~~~~--~~i~~l~d~L~--~rGW~v 61 (143)
+...++++.++++++++.|++.|.++-+.-| -..+|+|..++ .+..++.+.|+ ..|+.+
T Consensus 240 l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~ 319 (376)
T PRK06460 240 LKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTL 319 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCC
Confidence 3456788999999999999998877654333 14689998752 34667777775 234333
Q ss_pred cCC-------------CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 62 NSL-------------QFP-----------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 62 ~~~-------------~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
... ..+ .-+|++|-- |..+.+++||+.|++.+
T Consensus 320 Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl-----E~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 320 GGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI-----EDVNDLIEDLDRALSTL 375 (376)
T ss_pred CCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhh
Confidence 110 111 125666653 78999999999998754
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=87.30 E-value=7.4 Score=32.40 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVAD 85 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~ 85 (143)
++..+..+++.++|+++ +...+++ +..+.+.+.... +..++.++|.++|=.+... .+..+|++... ..+++.++
T Consensus 310 ~~~~~~~~~l~~~L~~l-~~~~i~~~~~~g~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~-~~~~iRi~p~l-~~t~e~i~ 385 (396)
T PRK04073 310 ERSLELGEYFKEQLKEI-DNPMIKEVRGRGLFIGVELNE-PARPYCEALKEEGLLCKET-HETVIRFAPPL-VITKEELD 385 (396)
T ss_pred HHHHHHHHHHHHHHHhh-cCCcccceecceEEEEEEecc-hHHHHHHHHHHCCeEEecC-CCCEEEEECCc-ccCHHHHH
Confidence 44556688899999887 3333333 344555554432 3568889999999776432 23456776532 33568899
Q ss_pred HHHHHHHHHH
Q psy10208 86 KFISDVREEL 95 (143)
Q Consensus 86 ~fl~Dl~~ai 95 (143)
++++-|++++
T Consensus 386 ~~~~~l~~~l 395 (396)
T PRK04073 386 WAFEKIKAVL 395 (396)
T ss_pred HHHHHHHHHh
Confidence 9988887764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=16 Score=30.09 Aligned_cols=83 Identities=6% Similarity=0.016 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC--CCCHHHHHHHH-hhcCceecCCC-----CCCeeeEEEEeccc
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD--VFHIYRLSSGL-NKRGWNTNSLQ-----FPVGIHICITHMHT 79 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L-~~rGW~v~~~~-----~P~~ihi~v~~~h~ 79 (143)
+.+.+..+.+.+.|++++++.+. .+....+-+..+ +.|..+++++| +++|..+.... ....+|+++...
T Consensus 293 ~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~-- 369 (386)
T PRK07550 293 AEIARRRDAFRAVFARLPGWELL-ASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANA-- 369 (386)
T ss_pred HHHHHHHHHHHHHHHhCCCceeC-CCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecC--
Confidence 44555667788888887777543 223333334443 57888999987 56899886532 234689988742
Q ss_pred ChhHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVRE 93 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ 93 (143)
..+.+++.++.|++
T Consensus 370 ~~~~~~~~~~~l~~ 383 (386)
T PRK07550 370 DVAGIGELVERLRA 383 (386)
T ss_pred CHHHHHHHHHHHHh
Confidence 34555555555543
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=14 Score=32.05 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCC-----C-CHHHHHHHHhhcCceecCCC-----CCCeeeEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDV-----F-HIYRLSSGLNKRGWNTNSLQ-----FPVGIHICI 74 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~-----~-~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v 74 (143)
.++..+..+++.+.|++++|+++ ..|+..-+.| +.+. . +...+.+.|.++|..+.... .+..+|+++
T Consensus 416 ~~~~~~~r~~l~~~L~~~~g~~~-~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~ 494 (517)
T PRK13355 416 GGRVYEQRELVYNALNAIPGISA-VKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVY 494 (517)
T ss_pred HHHHHHHHHHHHHHHhcCCCccc-CCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEe
Confidence 34567778889999999999875 4677777777 3321 1 22334466888998775432 245688888
Q ss_pred EecccChhHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. ..+.+++-++.|++.++.
T Consensus 495 ~~---~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 495 LP---RLEDLEDAMDRLADFFSY 514 (517)
T ss_pred CC---CHHHHHHHHHHHHHHHHH
Confidence 52 346666666777666654
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.79 E-value=14 Score=30.83 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC---------C---CCHHHHHH-HHhhcCceecCCC---CCCe
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD---------V---FHIYRLSS-GLNKRGWNTNSLQ---FPVG 69 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~---------~---~~i~~l~d-~L~~rGW~v~~~~---~P~~ 69 (143)
.+..-+..+.+.+.|++++|+.+. .|+-..+.|- .+ . .|--++.. .++++|+.+.... .+..
T Consensus 297 ~~~~~~~~~~~~~~L~~~~g~~~~-~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~ 375 (402)
T PRK06107 297 VAVYKQRRDYALALLNAIPGLSCL-VPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPY 375 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCe
Confidence 344455666778888888787654 3544444442 11 1 13345554 4567899876542 3567
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+|+++.. ..+.+++.++-|++.++.+
T Consensus 376 iRis~~~---~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 376 FRLSIAT---SLETLEEACARIERAVAAL 401 (402)
T ss_pred EEEEeCC---CHHHHHHHHHHHHHHHHhc
Confidence 8998884 3578888888888877655
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=86.46 E-value=6.1 Score=36.44 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEE--Ee--------cCCCCHHHHHHHHhhcCceecCCCCCCeee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIA--LG--------SDVFHIYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVa--f~--------~~~~~i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
|.+...+--+-+|.|++++|+. +++++-.-....|| |- +.+++.-|++.+|...|+|-|+..-|.+=-
T Consensus 814 GL~~as~~AiLNaNYMakRLe~--hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~gt 891 (1001)
T KOG2040|consen 814 GLKDASKIAILNANYMAKRLES--HYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVAGT 891 (1001)
T ss_pred ccchhhHHHhhhhHHHHHHHhh--ccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccCCc
Confidence 6667778788899999999998 47777654444555 32 236888999999999999999998887766
Q ss_pred EEEEecccC--hhHHHHHHH---HHHHHHHHHHcC
Q psy10208 72 ICITHMHTQ--PGVADKFIS---DVREELAIIMQN 101 (143)
Q Consensus 72 i~v~~~h~~--~~~~~~fl~---Dl~~ai~~~~~~ 101 (143)
++|-| .-+ ..-+|+|.+ -+|+.|.++.+.
T Consensus 892 LMIEP-TESE~k~ElDRfcdAliSIreEI~~ie~G 925 (1001)
T KOG2040|consen 892 LMIEP-TESEDKAELDRFCDALISIREEIAQIEEG 925 (1001)
T ss_pred eEecc-CccccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77764 333 244778877 456666666543
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=5.6 Score=33.87 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC----CCHHHHHHHHhh--cCcee
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV----FHIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~----~~i~~l~d~L~~--rGW~v 61 (143)
-++++..++|..+++.|++.|.++-+.-|. ..+|+|..++ .....+.+.|+- .|+.+
T Consensus 261 lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~Sl 340 (395)
T PRK08114 261 VRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSW 340 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeeccc
Confidence 357788889999999999998877554332 3589998753 224556666653 23322
Q ss_pred cCCC------CC----------------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 62 NSLQ------FP----------------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 62 ~~~~------~P----------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.... .| .-+|++|- -|.++.+++||+.|++.+
T Consensus 341 Gg~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvG-----lEd~~DLi~Dl~~Al~~~ 394 (395)
T PRK08114 341 GGFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIG-----LEDVDDLIADLAAGFARI 394 (395)
T ss_pred CCccceeccCCchhhhccCChhHhcCCCCeEEEEec-----cCCHHHHHHHHHHHHHhh
Confidence 2110 01 12455554 378999999999998754
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=16 Score=30.75 Aligned_cols=87 Identities=16% Similarity=0.286 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCCCCHHHHHHHHhhcCceecCCC-C-----CCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDVFHIYRLSSGLNKRGWNTNSLQ-F-----PVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L~~rGW~v~~~~-~-----P~~ihi~v~~~ 77 (143)
+..+.+.+..+.+.+.|++. |+++. .|.-..+.| ..+. +..++.+.|.+.|-.+.... + +..+||++..
T Consensus 337 ~~~~~~~~~r~~~~~~L~~~-~~~~~-~p~gg~f~~~~l~~-~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~- 412 (431)
T PRK15481 337 QARLFYAQRRQKLARALQQY-GIAIP-SPGDGLNLWLPLDT-DSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST- 412 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccc-cCCCeEEEEEECCC-CHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-
Confidence 34555666677788888887 66643 343334444 3332 56788999999998876632 1 2358888874
Q ss_pred ccChhHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELA 96 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~ 96 (143)
.+.+.++++++-|++++.
T Consensus 413 -~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 413 -LNDAEINRLAADLHQALN 430 (431)
T ss_pred -CChHHHHHHHHHHHHHhc
Confidence 335778888888887753
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=85.71 E-value=8 Score=33.07 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc-C
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT-Q 80 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~-~ 80 (143)
..+++.+..+++.++|+++..+..+++ --+-.|-|.. +.+...+.+.|.++|-.+... +-.+.++|+.+ +
T Consensus 332 ~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~-~~~~~~~~~~l~~~Gl~~~~~----g~~i~~~Ppl~it 406 (428)
T PRK07986 332 WQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTR-PVNMAALQRFFVEQGVWIRPF----GKLIYLMPPYIIL 406 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCC-cccHHHHHHHHHHCCcEEEec----CCEEEEeCCCCCC
Confidence 356666777888888887633434444 1222223332 234568899999999776533 22456666544 6
Q ss_pred hhHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELA 96 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~ 96 (143)
++.++++++-|.++++
T Consensus 407 ~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 407 PEQLQRLTAAVNRAVQ 422 (428)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999998874
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=85.70 E-value=3.2 Score=34.34 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------------ceeEEEEecCC--CCHHHHHHHHhhc--Cceec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP-----------------ATSVIALGSDV--FHIYRLSSGLNKR--GWNTN 62 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------------~l~vVaf~~~~--~~i~~l~d~L~~r--GW~v~ 62 (143)
....++..++++++++.|++.|+++-+.-| ..++|+|..++ .....+.+.|+-- |..+.
T Consensus 237 ~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G 316 (369)
T cd00614 237 PLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLG 316 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCC
Confidence 356778889999999999999887654333 36789998752 3456666776642 33222
Q ss_pred CC-------------CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 63 SL-------------QFP-----------VGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 63 ~~-------------~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
.. ..| .-+|++|- -+.++.+++||+.++
T Consensus 317 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svG-----lE~~~dl~~dl~~al 368 (369)
T cd00614 317 GVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVG-----IEDVEDLIADLEQAL 368 (369)
T ss_pred CCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHhh
Confidence 11 011 12455554 378999999999885
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=85.61 E-value=9.8 Score=31.80 Aligned_cols=91 Identities=7% Similarity=0.015 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEecc--CceeEEEEe--cC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFGT--PATSVIALG--SD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg~--p~l~vVaf~--~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+.++..+..+++.++|+++. .+.++++ +.-.++++. .+ .-+...+...|.++|=.+... .++.+|++....|
T Consensus 300 l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~-g~~~lR~~p~~~~- 377 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA-GPNVVRFAPSLVI- 377 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec-CCCEEEEeCCCCC-
Confidence 45666778888889888863 1333433 222333332 21 113457888999999776542 2445777655444
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.++++++-|++++..+
T Consensus 378 t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 378 SDDDIDEGLARFERAIEQV 396 (397)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5788999999998888654
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.26 E-value=18 Score=30.23 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC-----C-CCHHHHHHHHh-hcCceecCCC---CCCeeeEEEE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD-----V-FHIYRLSSGLN-KRGWNTNSLQ---FPVGIHICIT 75 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~-----~-~~i~~l~d~L~-~rGW~v~~~~---~P~~ihi~v~ 75 (143)
.+.+.+..+.+.+.|++..|+.+. .|+-..+.| +.+ + .+..++.+.|. ++|-.+.... .+..+|+++.
T Consensus 311 ~~~~~~~r~~l~~~L~~~~~~~~~-~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~ 389 (412)
T PTZ00433 311 VAKLEEGAMVLYNHIGECIGLSPT-MPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS 389 (412)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccc-CCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec
Confidence 345556667788888887676643 454333433 332 1 25568888886 5798776543 3668999997
Q ss_pred ecccChhHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. .+.+++-++-|++++...
T Consensus 390 ~~---~e~l~~al~~l~~~~~~~ 409 (412)
T PTZ00433 390 RP---VEVLREAVERIKAFCERH 409 (412)
T ss_pred CC---HHHHHHHHHHHHHHHHHh
Confidence 42 467777777777776644
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.12 E-value=12 Score=31.69 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhCC-CeeEecc----CceeEEEEecCC-----CCHHHHHHHHhhcCceecC-CCCCCeeeEEEE
Q psy10208 7 TRSIIETVKYIEKELRSMD-GLFIFGT----PATSVIALGSDV-----FHIYRLSSGLNKRGWNTNS-LQFPVGIHICIT 75 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~-g~~vlg~----p~l~vVaf~~~~-----~~i~~l~d~L~~rGW~v~~-~~~P~~ihi~v~ 75 (143)
.+++.+..+++.++|+++. .+.++++ +-+--+-|..+. .....+...|.++|=.+.. -+....+|++..
T Consensus 329 ~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~ 408 (433)
T PRK08117 329 LDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPP 408 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCC
Confidence 4555666777888887752 1223333 223234454321 1234677888899954432 222345666554
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
..| +++.++++++-|.++++.+.+
T Consensus 409 ~~~-t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 409 LTV-TKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred ccC-CHHHHHHHHHHHHHHHHHHhc
Confidence 334 578999999999999887643
|
|
| >PF13991 BssS: BssS protein family | Back alignment and domain information |
|---|
Probab=85.12 E-value=2.5 Score=27.83 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC
Q psy10208 81 PGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.+++.+|+.+|.+.|+.+.+..
T Consensus 44 ~e~Ar~Li~~L~~~I~kiE~se 65 (73)
T PF13991_consen 44 TEMARQLISILEAGIDKIESSE 65 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999999999864
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=85.06 E-value=13 Score=32.03 Aligned_cols=93 Identities=10% Similarity=0.037 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC------------------ceeEEEEecCC--CCHHHHHHHHhh--cCce
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP------------------ATSVIALGSDV--FHIYRLSSGLNK--RGWN 60 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------------------~l~vVaf~~~~--~~i~~l~d~L~~--rGW~ 60 (143)
+-..+++..++|..|++.|++.|+++-+--| --.+|+|..++ -....+.+.|+- .++.
T Consensus 296 L~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~s 375 (436)
T PRK07812 296 LSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVAN 375 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecc
Confidence 3456788889999999999999988655333 13589998642 225677777763 2332
Q ss_pred ecC---------C----CCC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 61 TNS---------L----QFP-----------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 61 v~~---------~----~~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+.. . ..| .-+|++|-- |..+.+++||+.+++..++
T Consensus 376 lG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl-----Ed~~dli~dl~~Al~~~~~ 434 (436)
T PRK07812 376 IGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI-----EGIDDILADLEAGFAAAKA 434 (436)
T ss_pred cCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc-----CCHHHHHHHHHHHHHhhhc
Confidence 211 1 011 124555542 7899999999999987765
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=85.02 E-value=8.4 Score=31.76 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-------ceeEEEEec-CCCCHHHHHHHHhhcCceec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-------ATSVIALGS-DVFHIYRLSSGLNKRGWNTN 62 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-------~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~ 62 (143)
+.++.++-.++++++.+.|++++++++...+ ...+|.|.. .+.+-.++.+.|+++|-.+.
T Consensus 257 l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~ 324 (380)
T TIGR03588 257 LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQ 324 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcc
Confidence 4456667788899999999999988866442 223344432 24567899999999886554
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=84.83 E-value=11 Score=32.00 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEec-ccCh
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHM-HTQP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~-h~~~ 81 (143)
.++..+..++|.++|+++.....+++ ..+.-|-|. +..+...+.++|.++|-.+.... -++.+.|+ ..++
T Consensus 336 ~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~-~~~~~~~~~~~l~~~Gv~~~~~~----~~l~~~ppl~~t~ 410 (427)
T TIGR00508 336 QKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMY-KPVNVEELQKKFVEQGVWIRPFG----KLIYVMPPYIITT 410 (427)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEEC-CccCHHHHHHHHHHCCeEEEecC----CEEEEECCCCCCH
Confidence 45667778889999888742222332 222233343 23456788999999997775432 23445554 2346
Q ss_pred hHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELA 96 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~ 96 (143)
+.++++++-+++++.
T Consensus 411 ~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 411 EQLQKLTAALIEALH 425 (427)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999998888875
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.77 E-value=19 Score=30.57 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC-----C-CCHHHHHHHH-hhcCceecCC---CCCCeee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD-----V-FHIYRLSSGL-NKRGWNTNSL---QFPVGIH 71 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~-----~-~~i~~l~d~L-~~rGW~v~~~---~~P~~ih 71 (143)
+++..+...+.++.+.+.|++++|+.....|+-....|- .+ + .|-.+++.+| ++.|..+... ..+..+|
T Consensus 322 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lR 401 (430)
T PLN00145 322 FTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLR 401 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEE
Confidence 345556666777788899999988876555655454442 22 1 2445566544 5678877553 3466799
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
|++.. ..+.+++-++.|++.+..-+
T Consensus 402 is~~~---~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 402 ITFAI---DPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred EEeCC---CHHHHHHHHHHHHHHHHHhc
Confidence 99873 34666666776666665443
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.70 E-value=19 Score=29.56 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChh
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPG 82 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~ 82 (143)
..+...+..+.+.+.|++. |+++. .+..+-+-+.. +.+-.++.+.|.++|..+.... .+..+|+++.. ..
T Consensus 284 ~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~-~~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~~----~~ 356 (371)
T PRK05166 284 GVALALAERERLKKELAEM-GYRIA-PSRANFLFFDA-RRPASAVAEALLRQGVIVKPWKQPGFETFIRVSIGS----PE 356 (371)
T ss_pred HHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeC-CCCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcCC----HH
Confidence 3445566677888999988 77753 34444333332 3356789999999998776543 24568888873 24
Q ss_pred HHHHHHHHHHHH
Q psy10208 83 VADKFISDVREE 94 (143)
Q Consensus 83 ~~~~fl~Dl~~a 94 (143)
..+.|++-|++.
T Consensus 357 ~~~~l~~~l~~i 368 (371)
T PRK05166 357 ENDHFVAALDKV 368 (371)
T ss_pred HHHHHHHHHHHH
Confidence 466777666654
|
|
| >PRK12301 bssS biofilm formation regulatory protein BssS; Reviewed | Back alignment and domain information |
|---|
Probab=84.64 E-value=2.3 Score=28.46 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=42.8
Q ss_pred CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 33 PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 33 p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
|..|||+|.-..+|.|+.. |-+.-..-+..|.|...+..=+.+. +.+++.+|+.+|.+-++.++...
T Consensus 9 qthPvvGWdistvd~YDAm--mirlhyLss~~Q~~e~A~v~~tlwL-TtdvArqlI~iLeagI~kiesse 75 (84)
T PRK12301 9 QTHPLVGWDISTVDSYDAL--MLRLHYQSPNDQEPEGAEVGQTLWL-TTDVARQFISILEAGIAKIESGD 75 (84)
T ss_pred cccccccccccCcccHhhH--HHhhhhcCCCCCCcccccccceEEe-cHHHHHHHHHHHHHHHHHHhccc
Confidence 4568999987777777421 2233333344455555544333322 24899999999999999998753
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=84.58 E-value=7.9 Score=32.45 Aligned_cols=89 Identities=8% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC-CCHHHHHHHHhh--cCceecC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV-FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~-~~i~~l~d~L~~--rGW~v~~ 63 (143)
...+++..++++.+++.|++.|.++-+..|. -++++|..++ .....+.+.|+- .|+.+..
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~~~~~s~G~ 325 (380)
T PRK06176 246 GLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGG 325 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEccCCCC
Confidence 4567788889999999999988887554432 3578888742 234566666653 3443322
Q ss_pred CC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 64 LQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 64 ~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.. .| .-+|++|- -|.++.+++||+.|++.
T Consensus 326 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dli~dl~~Al~~ 378 (380)
T PRK06176 326 VESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG-----IEHEQDLLEDLEQAFAK 378 (380)
T ss_pred CCceeeCCcccccccCCHHHHHhcCCCcCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence 11 01 12455554 37899999999999874
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=84.33 E-value=13 Score=30.15 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----CCeeeEEEEecc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----PVGIHICITHMH 78 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----P~~ihi~v~~~h 78 (143)
.++.+.+.+..+.+.+.|++++++++.+ +..+.+.+..+ +..++.++|.++|..+..... +..+|+++...+
T Consensus 244 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~f~~~~~~--~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~ 320 (330)
T TIGR01140 244 AATRARLAAERARLAALLARLGGLEVVG-GTALFLLVRTP--DAAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDE 320 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceECC-CCCeEEEEEcC--CHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHH
Confidence 4456677778888999999997676643 33333333333 356899999999998866432 246888776422
Q ss_pred cChhHHHHHHHH
Q psy10208 79 TQPGVADKFISD 90 (143)
Q Consensus 79 ~~~~~~~~fl~D 90 (143)
+. +.|+.-
T Consensus 321 ---~~-~~~~~~ 328 (330)
T TIGR01140 321 ---EN-DRLEEA 328 (330)
T ss_pred ---HH-HHHHHh
Confidence 33 666553
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.33 E-value=13 Score=32.07 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCC-----C--C---HHHHHHHHhhcCceecCCCCCCeee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDV-----F--H---IYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~-----~--~---i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
+.+++.+..++|.++|+++..+.++++ --+..|-|..+. + + ...+.+.+.++|=.+... +-.
T Consensus 350 l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----~~~ 425 (466)
T PRK07036 350 LCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL----EHL 425 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec----CCE
Confidence 445666777888888877644434433 334445554321 1 1 235778888999766432 224
Q ss_pred EEEEeccc-ChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHT-QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~h~-~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+.++|+++ +++.++++++-+.++++.+.
T Consensus 426 ~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 426 CVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred EEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 55777764 67899999999988887763
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.24 E-value=21 Score=30.62 Aligned_cols=89 Identities=8% Similarity=0.055 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhC---CC--eeEeccCceeEEEEecCCC-C-----------HHHHHHHHhhcCceecCCCCCCe
Q psy10208 7 TRSIIETVKYIEKELRSM---DG--LFIFGTPATSVIALGSDVF-H-----------IYRLSSGLNKRGWNTNSLQFPVG 69 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i---~g--~~vlg~p~l~vVaf~~~~~-~-----------i~~l~d~L~~rGW~v~~~~~P~~ 69 (143)
.+++.+..++|.++|+++ .| +...+...+.-|-|..+.. | ...+...|.++|-.+.....|.
T Consensus 325 ~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~- 403 (433)
T PRK00615 325 YTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEA- 403 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccc-
Confidence 445555666776665542 12 3334433444555654321 1 2367788889997665443333
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..++..|+ ++.+|.+++-++++++.+-
T Consensus 404 --~~ls~~ht-~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 404 --SFLSSAHS-MENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred --cceecCCC-HHHHHHHHHHHHHHHHHHh
Confidence 25677775 6899999999999988764
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=84.17 E-value=17 Score=31.73 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhh-CCCeeEeccC-ce-eEEE--EecCC-----C--C-HHHHHHHHhhcCceecCCCCCCeeeE
Q psy10208 6 TTRSIIETVKYIEKELRS-MDGLFIFGTP-AT-SVIA--LGSDV-----F--H-IYRLSSGLNKRGWNTNSLQFPVGIHI 72 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~-i~g~~vlg~p-~l-~vVa--f~~~~-----~--~-i~~l~d~L~~rGW~v~~~~~P~~ihi 72 (143)
+.+++.+...+|.++|++ +++...+||- .+ -+.+ +..+. + . -..+.+...++|-.+-+ -+.++
T Consensus 342 l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp----~g~~i 417 (449)
T COG0161 342 LLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRP----LGDVI 417 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEee----cCCEE
Confidence 456677889999999998 6555577773 21 1223 33221 1 1 23556666778865543 36689
Q ss_pred EEEeccc-ChhHHHHHHHHHHHHHHHHHcC
Q psy10208 73 CITHMHT-QPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 73 ~v~~~h~-~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.++|+.+ +++-++++++-++++++...+.
T Consensus 418 ~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 418 YLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred EEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999887 6899999999999999987654
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.09 E-value=17 Score=30.71 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTN 62 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~ 62 (143)
...+++..++++.+++.|++.|.++-+.-|. -.+|+|..++ -....+.+.|+- .|+.+.
T Consensus 260 ~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G 339 (398)
T PRK08249 260 KLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLG 339 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCC
Confidence 3456777899999999999988877543332 3589997642 235566777763 454332
Q ss_pred CCC-------------CC-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SLQ-------------FP-----------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~~-------------~P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
... +| .-+|++|- -|.++.+++||..+++.+++
T Consensus 340 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~~~~ 396 (398)
T PRK08249 340 AVETIYGPARTTSHVENTLEERAALGIPEGLVRISVG-----IEDTEDLIADLEQAFAHLES 396 (398)
T ss_pred CCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHHhhh
Confidence 210 11 12455554 37899999999999987654
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=83.92 E-value=12 Score=31.66 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCce-----------------eEEEEecCC-C-CHHHHHHHHhh--cCcee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPAT-----------------SVIALGSDV-F-HIYRLSSGLNK--RGWNT 61 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l-----------------~vVaf~~~~-~-~i~~l~d~L~~--rGW~v 61 (143)
+.-++++.-++|+.|++.|++.|.++-+--|.+ .+|+|..++ . ....+.+.|+- .|+.+
T Consensus 253 l~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~Sl 332 (386)
T PF01053_consen 253 LPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSL 332 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhc
Confidence 345678888999999999999998885544422 589998764 2 46677788763 45443
Q ss_pred cCCC----C--------------------CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 62 NSLQ----F--------------------PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 62 ~~~~----~--------------------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.... . +.-+|++|-- |..+.+++||+.|++
T Consensus 333 Gg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl-----Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 333 GGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL-----EDPDDLIADLEQALE 386 (386)
T ss_dssp SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S-----S-HHHHHHHHHHHHH
T ss_pred CCcccccccccchhhccCChhhhhccCCCCCeeEEEecc-----CCHHHHHHHHHHhcC
Confidence 3221 1 1235666653 789999999999875
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=83.84 E-value=22 Score=29.46 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-C------CCCHHHHHHHH-hhcCceecCC---CCCCeeeEEE
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-D------VFHIYRLSSGL-NKRGWNTNSL---QFPVGIHICI 74 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~------~~~i~~l~d~L-~~rGW~v~~~---~~P~~ihi~v 74 (143)
..+.+.+..+.+.+.|++++|+... .|+-..+.|-. + ..+-.++.++| ++.|=.+... ..+..+|+++
T Consensus 301 ~~~~~~~~r~~l~~~L~~~~~~~~~-~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~ 379 (401)
T TIGR01264 301 TLSVLESNAMLCYGALAAVPGLRPV-MPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL 379 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccc-CCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE
Confidence 3445555677788999998776643 34433343322 1 13556777776 4788877543 2467899999
Q ss_pred EecccChhHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
... .+.+++-++-|++.++
T Consensus 380 ~~~---~~~l~~~l~rl~~~~~ 398 (401)
T TIGR01264 380 TVP---VVMMEEACSRIQEFCE 398 (401)
T ss_pred cCC---HHHHHHHHHHHHHHHh
Confidence 742 3677777777766654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.77 E-value=11 Score=32.87 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCeeEeccCc----eeEEEEecC----CCC---HHHHHHHHhhcCceecC-CCCCCeee
Q psy10208 5 NTTRSIIETVKYIEKELRSM-DGLFIFGTPA----TSVIALGSD----VFH---IYRLSSGLNKRGWNTNS-LQFPVGIH 71 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i-~g~~vlg~p~----l~vVaf~~~----~~~---i~~l~d~L~~rGW~v~~-~~~P~~ih 71 (143)
++.++..+.-++|.++|+++ ..+..+||.. +--|-|..+ +-+ ...+.+++.++|-.+.. ......+|
T Consensus 341 ~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviR 420 (447)
T COG0160 341 NLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLR 420 (447)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEE
Confidence 35667777788888888764 2455788852 344556542 122 34788999999965544 34566778
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|.- |..++++.+|++++-|.+++.++
T Consensus 421 i~P-PL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 421 ILP-PLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred EeC-CcccCHHHHHHHHHHHHHHHHhh
Confidence 743 45557899999999999998765
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=17 Score=31.49 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhCC-Cee-Ee----ccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-CCCeeeEEEEecc
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLF-IF----GTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-FPVGIHICITHMH 78 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~-vl----g~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~P~~ihi~v~~~h 78 (143)
..+++.+..++|.++|+++. .+. ++ |..-+.-|-|..+. -...+...|.++|-.+.... .+..+|++... .
T Consensus 355 l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~-~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl-~ 432 (459)
T PRK11522 355 LPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE-IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPL-T 432 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCch-HHHHHHHHHHHCCeEEEecCCCCCEEEEECCc-c
Confidence 45667778888888888752 222 23 33223333343321 24578899999997775321 23446665543 3
Q ss_pred cChhHHHHHHHHHHHHHHHHHc
Q psy10208 79 TQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+++.++++++-|.++++.+..
T Consensus 433 ~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 433 LTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999987764
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=83.65 E-value=9.8 Score=31.74 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEec-cCceeEEEEecCC-CCHHHHHHHHhh--cCceecCCC----CC--------
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFG-TPATSVIALGSDV-FHIYRLSSGLNK--RGWNTNSLQ----FP-------- 67 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p~l~vVaf~~~~-~~i~~l~d~L~~--rGW~v~~~~----~P-------- 67 (143)
..+.++..++++.+++.|++.|+++-+- .|.-.+++|...+ -....+.+.|+- .|+.+.... .|
T Consensus 248 ~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~ 327 (364)
T PRK07269 248 SLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADI 327 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccC
Confidence 3466777889999999999998875544 5667789998642 223455555543 344332210 11
Q ss_pred ------------CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 68 ------------VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 68 ------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.-+|++|- -+.++.+++||+++++
T Consensus 328 ~~~~r~~~Gi~~~liRlsvG-----lE~~~dli~dl~~al~ 363 (364)
T PRK07269 328 PAEVRHSYGLTDDLLRLSIG-----IEDARDLIADLKQALE 363 (364)
T ss_pred CHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHhc
Confidence 12455554 3789999999999864
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=83.57 E-value=12 Score=31.92 Aligned_cols=86 Identities=7% Similarity=0.040 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc-Ch
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT-QP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~-~~ 81 (143)
.+++.+..++|.++|+++..+..+++ -.+--|-|.. ..+--.+.+.+.++|-.+... +-.+.++|+.+ ++
T Consensus 330 ~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~-~~~~~~~~~~~~~~Gl~~~~~----g~~l~~~PpL~it~ 404 (422)
T PRK05630 330 RKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQ-PVDMEEATQAAVDHGVWLRPF----GRLVYVMPPYITTS 404 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECC-cccHHHHHHHHHHCCeEEEec----CCEEEEECCccCCH
Confidence 34666777788887776533223333 2222333432 233457888999999776543 22355666544 68
Q ss_pred hHHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELAI 97 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~ 97 (143)
+.++++++-|++++..
T Consensus 405 ~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 405 EQIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999999988753
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.53 E-value=12 Score=32.18 Aligned_cols=89 Identities=11% Similarity=0.040 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC-CCHHHHHHHHhhcC--ceecCC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV-FHIYRLSSGLNKRG--WNTNSL 64 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~-~~i~~l~d~L~~rG--W~v~~~ 64 (143)
-++++..++|+.|++-|++-|.++-+--|. -.+|+|..++ -++..+.+.|+--. -.+...
T Consensus 263 ~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~~~a~SlGgv 342 (396)
T COG0626 263 LRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGV 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCccEEeccCCCc
Confidence 356777888999999999988888665552 4689998766 56777777776432 111110
Q ss_pred ----CC---------C-----------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 65 ----QF---------P-----------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 65 ----~~---------P-----------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. | .-+|++|- -+.++.+++||+.+++.+
T Consensus 343 eSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG-----lEd~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 343 ESLISHPATMTHASIPLEERAKAGITDGLVRLSVG-----LEDVEDLIADLEQALAKA 395 (396)
T ss_pred ccccccccccCcccCCHhHHHhcCCCCCeEEEEec-----CCCHHHHHHHHHHHHHhh
Confidence 11 1 11355443 388999999999998865
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=15 Score=30.96 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
-++++..++|+.|++.|++.|.++-+.-|. -.+|+|..++ -....+.+.|+- .|+.+..
T Consensus 251 lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~ 330 (388)
T PRK08861 251 ARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGG 330 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCC
Confidence 467778889999999999998876543221 2488998752 225566677663 3443322
Q ss_pred CC-------------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 64 LQ-------------F-----------PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 64 ~~-------------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.. . +.-+|++|-- |.++.+++||+.|++.+..
T Consensus 331 ~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl-----E~~~dli~Dl~~al~~~~~ 386 (388)
T PRK08861 331 VESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL-----EDAQDLIADLDQAFAKAAE 386 (388)
T ss_pred CcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHHHHHHHh
Confidence 10 0 1235666643 7899999999999987764
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=83.01 E-value=17 Score=31.09 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhC---CCeeEeccCcee-EEEEecCC------CCHHHHHHHHhhcCc---eecCCCCCC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSM---DGLFIFGTPATS-VIALGSDV------FHIYRLSSGLNKRGW---NTNSLQFPV 68 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i---~g~~vlg~p~l~-vVaf~~~~------~~i~~l~d~L~~rGW---~v~~~~~P~ 68 (143)
||.+..++.++.-.++.+++++. -+-+++..|.-| .++|+.+. -+.+.|...|.+||- .+-....+.
T Consensus 272 g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~ 351 (389)
T PF05889_consen 272 GYGALLKERKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKK 351 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCc
Confidence 78999999999999999998763 144444446433 46677653 357999999988764 211111111
Q ss_pred e---------eeEEE-EecccChhHHHHHHHHHHHHHH
Q psy10208 69 G---------IHICI-THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 69 ~---------ihi~v-~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
. --+++ .-.-++++.+|.|++-|+++++
T Consensus 352 ~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 352 QTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred ccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 1 12333 2234467899999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=82.78 E-value=25 Score=30.16 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCee----EeccCceeEEEEecCC-----CC---HHHHHHHHhhcCceecCC-C-CCC-e
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLF----IFGTPATSVIALGSDV-----FH---IYRLSSGLNKRGWNTNSL-Q-FPV-G 69 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~----vlg~p~l~vVaf~~~~-----~~---i~~l~d~L~~rGW~v~~~-~-~P~-~ 69 (143)
+.+++.+..++|.++|+++ ..+. +-|..-+.-+-|..+. .| ...+...|.++|-.+... + .|. .
T Consensus 341 ~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~ 420 (451)
T PRK07678 341 LIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYN 420 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCC
Confidence 3445566677777777542 2222 2233333334443221 12 357788899999776431 1 122 1
Q ss_pred eeEEEEeccc-ChhHHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHT-QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 70 ihi~v~~~h~-~~~~~~~fl~Dl~~ai~~~~ 99 (143)
-.+.++|+++ +++.++++++-++++++.++
T Consensus 421 ~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (451)
T PRK07678 421 NVLTLSPPLVISSEEIAFIVGTLKTALERIK 451 (451)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 3355666553 57889999999999987653
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=82.54 E-value=10 Score=31.93 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEec------cCc-----------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFG------TPA-----------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg------~p~-----------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
...++..++++.+++.|++.|++.-+. +|+ ..+|+|..++ .....+.+.|+- .++.+..
T Consensus 263 ~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~ 342 (398)
T PRK07504 263 VRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGD 342 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCC
Confidence 455666799999999999998876332 232 4589998742 334566677653 3333322
Q ss_pred CC----CC--------------------CeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 64 LQ----FP--------------------VGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 64 ~~----~P--------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.. .| .-+|++|- -+..+.+++||+.+++.++
T Consensus 343 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~~~ 397 (398)
T PRK07504 343 AKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG-----LEDTDDLIEDLAAALKKVR 397 (398)
T ss_pred CCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhhh
Confidence 10 01 12455554 3789999999999998764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=82.35 E-value=21 Score=30.62 Aligned_cols=90 Identities=10% Similarity=0.004 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecC----CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSD----VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~----~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~ 77 (143)
..++..+..+++.++|+++..+..+++. -+.-+-|... .....++.++|.++|-.+.... ..+|++-..
T Consensus 344 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~--~~lr~~Ppl- 420 (442)
T PRK13360 344 LLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTG--DILALSPPL- 420 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEecC--CEEEEeCCC-
Confidence 3456667788888888876444333332 2222334321 1234678889999997775422 334553322
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+++.+|++++-|+++++++
T Consensus 421 ~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 421 IIEEAQIDELFDILAQALKET 441 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHh
Confidence 235789999999999998654
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.26 E-value=9.2 Score=32.06 Aligned_cols=87 Identities=6% Similarity=-0.000 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhh--cCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNK--RGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~--rGW~v~~ 63 (143)
...++..++++.+++.|++.|+++-+--|. -.+|+|..++ -....+.+.|+- .|+.+..
T Consensus 259 ~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~ 338 (388)
T PRK07811 259 VRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGG 338 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCC
Confidence 456677889999999999999887554332 2489998742 235566677663 4554432
Q ss_pred CC-------------C--------CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 64 LQ-------------F--------PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 64 ~~-------------~--------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. . +.-+|++|- -+..+.+++||..|++
T Consensus 339 ~~sl~~~~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~ 387 (388)
T PRK07811 339 VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVG-----IEDVADLLADLEQALG 387 (388)
T ss_pred CcceEeCCcccCcccCCHhhcCCCCCEEEEEeC-----CCCHHHHHHHHHHHhh
Confidence 11 1 123456554 2789999999999875
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.84 E-value=29 Score=29.00 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---C-CCeeeEEEEeccc
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---F-PVGIHICITHMHT 79 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~-P~~ihi~v~~~h~ 79 (143)
.+..+.+.+.+.++.+++++++ ++-+..+..|=|-+....-....+.+.|.++|-.+=... . +..+||+|...
T Consensus 262 ~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~aNFvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~-- 338 (356)
T COG0079 262 EESVERIREERERLYAALKALG-LFGVFPSQANFVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGTP-- 338 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcEEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCH--
Confidence 4566778889999999999996 553334446666666543115579999999997664442 2 33789988642
Q ss_pred ChhHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELA 96 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~ 96 (143)
+--++|++-|++.+.
T Consensus 339 --een~~ll~AL~~~~~ 353 (356)
T COG0079 339 --EENDRLLAALREVLK 353 (356)
T ss_pred --HHHHHHHHHHHHHHh
Confidence 334999988887754
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=81.73 E-value=28 Score=28.70 Aligned_cols=82 Identities=9% Similarity=-0.018 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhCCCeeEeccCce--eEEEEecCCCCHHHHHHHH-hhcCceecCCC---CCCeeeEEEEecccChhHH
Q psy10208 11 IETVKYIEKELRSMDGLFIFGTPAT--SVIALGSDVFHIYRLSSGL-NKRGWNTNSLQ---FPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 11 ~~~a~~l~~~i~~i~g~~vlg~p~l--~vVaf~~~~~~i~~l~d~L-~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~~ 84 (143)
.+..+.+.+.+++.+++... .|.- -.+.+-....+..+++++| ++.|..+.... .+..+||++.. .++.+
T Consensus 282 ~~~~~~l~~~l~~~~~~~~~-~p~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~---~~~~l 357 (373)
T PRK07324 282 RTNLAILDEWVAKEPRVSYV-KPKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC---DTETL 357 (373)
T ss_pred HHHHHHHHHHHhcCCCceEE-CCCceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecC---CHHHH
Confidence 33456677778887777754 3432 2222222346778899886 57798876643 35678888763 24666
Q ss_pred HHHHHHHHHHHH
Q psy10208 85 DKFISDVREELA 96 (143)
Q Consensus 85 ~~fl~Dl~~ai~ 96 (143)
.+-++-|++.+.
T Consensus 358 ~~~l~rl~~~l~ 369 (373)
T PRK07324 358 KKGLKKLSEFLR 369 (373)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=81.43 E-value=29 Score=28.70 Aligned_cols=87 Identities=7% Similarity=-0.009 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC----CCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEEe
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV----FHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICITH 76 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~----~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~~ 76 (143)
.+...+..+.+.+.|+++ |+.+......+-+-+..+. .+..++.++|. +.|..+.... .+..+||++.
T Consensus 293 ~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~- 370 (395)
T PRK08175 293 AEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI- 370 (395)
T ss_pred HHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-
Confidence 344456667888889888 6765433345555555432 25678888765 6798777642 1346888875
Q ss_pred cccChhHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. ..+.+.+.++.|++.+..
T Consensus 371 -~-~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 371 -E-NRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred -C-CHHHHHHHHHHHHHHHHh
Confidence 2 357777788888777754
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.40 E-value=17 Score=30.66 Aligned_cols=90 Identities=7% Similarity=0.012 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEe-ccC---ceeEEEEecCC-CCHHHHHHHHhhcCc-eecCCCCCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIF-GTP---ATSVIALGSDV-FHIYRLSSGLNKRGW-NTNSLQFPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vl-g~p---~l~vVaf~~~~-~~i~~l~d~L~~rGW-~v~~~~~P~~ihi~v~ 75 (143)
|-.++.++..+.++.|++.|++.+||... .+| ....|+|+..+ .-.-++....+++|- .+..+....++|+++-
T Consensus 262 Gl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~y 341 (364)
T PRK12462 262 GVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLY 341 (364)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcC
Confidence 66777888889999999999999978764 333 35567888543 223466777788996 4566667788999998
Q ss_pred ecccChhHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVR 92 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~ 92 (143)
+.+. .+-++.+++-++
T Consensus 342 na~~-~e~v~~L~~fm~ 357 (364)
T PRK12462 342 NAVS-EQAVSRLCAFLK 357 (364)
T ss_pred CCCC-HHHHHHHHHHHH
Confidence 7665 345555554443
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.26 E-value=28 Score=29.59 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC---CCHHHHHHHHhh--cCceec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV---FHIYRLSSGLNK--RGWNTN 62 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~---~~i~~l~d~L~~--rGW~v~ 62 (143)
-++++..++|+.+++.|++.|.++-+.-|. -.+|+|..+. .....+.+.|+- .|+.+.
T Consensus 258 lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG 337 (394)
T PRK09028 258 VRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWG 337 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccC
Confidence 357778889999999999988876553331 3589998752 234566666652 233221
Q ss_pred CC----CCC----------------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 SL----QFP----------------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ~~----~~P----------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.. ..| .-+|++|- -|..+.+++||..+++.+++
T Consensus 338 ~~~sLv~~p~~~~~~~~~~~~~~~~~liR~svG-----lEd~~dLi~Dl~~Al~~~~~ 390 (394)
T PRK09028 338 GFESLILGVFGINKLRTATNWDFSKPLIRLHIG-----LEDVDDLIADLEAGFERYNA 390 (394)
T ss_pred CCcceeECCCCcCccCchhhhcCCCCeEEEEeC-----cCCHHHHHHHHHHHHHHHHH
Confidence 11 011 12455554 27899999999999988765
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.20 E-value=13 Score=30.55 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhh-CCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 6 TTRSIIETVKYIEKELRS-MDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~-i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
..+++.+..++++++|++ ++++..+.+ +...++.+.... +...+.+.|.++|=.+... .+..+|++... ..+++
T Consensus 288 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~-~~~~~~~~l~~~gv~v~~~-g~~~lRi~p~~-~~~~~ 364 (377)
T PRK02936 288 FLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTE-EVAPVIEQLREEGLLVLSA-GPNVIRLLPPL-VVTKE 364 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecc-hHHHHHHHHHHCCeEEecC-CCCEEEEECCc-ccCHH
Confidence 445666777888888776 333333322 233445554432 2557888999999544322 23456766533 33467
Q ss_pred HHHHHHHHHHHH
Q psy10208 83 VADKFISDVREE 94 (143)
Q Consensus 83 ~~~~fl~Dl~~a 94 (143)
.++++++-|+++
T Consensus 365 ~i~~~i~~l~~~ 376 (377)
T PRK02936 365 ELDQAVYLLKKV 376 (377)
T ss_pred HHHHHHHHHHHh
Confidence 788888777664
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=80.95 E-value=28 Score=28.70 Aligned_cols=87 Identities=9% Similarity=0.039 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhCC-Cee-Eecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 8 RSIIETVKYIEKELRSMD-GLF-IFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~-g~~-vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
+++.+..+++.++++++. .+. ++++ +.-..+.+... .+..+++++|.++|-.+... .+..+|++... ..+++.
T Consensus 298 ~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~-~~~~~~~~~l~~~GV~~~p~-~~~~lR~~p~~-~~~~~~ 374 (389)
T PRK01278 298 DNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCV-VPNRDLVQALRDEGLLTVGA-GDNVVRLLPPL-IITEEE 374 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEe-cCHHHHHHHHHHCCeEEeec-CCCEEEEeCCc-ccCHHH
Confidence 444555666777766531 111 2222 22233333332 24678899999999766432 23456766533 235688
Q ss_pred HHHHHHHHHHHHHH
Q psy10208 84 ADKFISDVREELAI 97 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~ 97 (143)
++++++-|+++++.
T Consensus 375 i~~~l~~l~~~l~~ 388 (389)
T PRK01278 375 IDEALERLERAAES 388 (389)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988888754
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.77 E-value=1.9 Score=35.80 Aligned_cols=53 Identities=15% Similarity=0.382 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhCCCeeEecc-Cc-eeEEEEecCCCCHHHHHHHHhhcCceecC
Q psy10208 9 SIIETVKYIEKELRSMDGLFIFGT-PA-TSVIALGSDVFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~i~g~~vlg~-p~-l~vVaf~~~~~~i~~l~d~L~~rGW~v~~ 63 (143)
.=++.|+|+.+++++|+|++-+|+ |. --++-|..+. .++++..-.++|+.+.-
T Consensus 283 eEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~--f~eIakk~~r~gyFlY~ 337 (382)
T COG1103 283 EEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPV--FHEIAKKHKRKGYFLYE 337 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCch--HHHHHHhCcCCceeeHH
Confidence 346789999999999999999997 63 4567787776 45788887778877754
|
|
| >COG3870 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.37 E-value=11 Score=26.36 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHhhcCceecCCCCCCee----eEEEEecccChhHHHHHHHHHHHHHHHHHcC--CCCCCCChhhHH
Q psy10208 43 DVFHIYRLSSGLNKRGWNTNSLQFPVGI----HICITHMHTQPGVADKFISDVREELAIIMQN--PGLQLEGVMAMY 113 (143)
Q Consensus 43 ~~~~i~~l~d~L~~rGW~v~~~~~P~~i----hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~--p~~~~~~~a~~Y 113 (143)
++.|-.+|.++|+++|+..-.+..-.+. .-+++ .-++++.++.++.-|++.++...+. |....+++|.-|
T Consensus 9 qd~da~~l~~~L~d~~fraTkLAsTGGFlkaGNTTfl-iGved~~vd~~~s~Ike~C~~req~v~~~~~~~~sa~~y 84 (109)
T COG3870 9 QDQDANELEDALTDKNFRATKLASTGGFLKAGNTTFL-IGVEDDRVDALRSLIKENCKSREQLVTPISPMGGSADSY 84 (109)
T ss_pred ecccHHHHHHHHHhCCceeEEeeccCceeecCCeEEE-EecccchhHHHHHHHHHHhhhHhhccCCCCccCCCCCcc
Confidence 3557789999999999987665433322 23444 2456788999999999998877763 333445556555
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.17 E-value=20 Score=29.71 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=48.7
Q ss_pred HHHHHHhhC---CCeeEeccCceeEEEE-ecCCCCHHHHHHHH-hhcCceecCCCCCCeeeEEEEecccChhHHHHHHHH
Q psy10208 16 YIEKELRSM---DGLFIFGTPATSVIAL-GSDVFHIYRLSSGL-NKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISD 90 (143)
Q Consensus 16 ~l~~~i~~i---~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L-~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~D 90 (143)
.+.+.+++. +++.+. .|+-..+.| +.+..|-.++.+.| +++|..+... .+..+|+++... +.+.+++.++-
T Consensus 304 ~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~-~~~~iRi~~~~~--~~~~i~~~~~~ 379 (388)
T PRK08637 304 KTKEVLYDGKYDDAWQAY-PFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIAL-NETDLRIAFSCV--EEEDIPELFDS 379 (388)
T ss_pred HHHHHHHhhCCCCCcccc-cccceEEEEecCChHHHHHHHHHHhhhcceEEEec-cCCceEEEeecC--CHHHHHHHHHH
Confidence 344555554 245543 344445555 44444556788888 4678877532 345699999753 34778888888
Q ss_pred HHHHHHHH
Q psy10208 91 VREELAII 98 (143)
Q Consensus 91 l~~ai~~~ 98 (143)
|++++..+
T Consensus 380 l~~~~~~~ 387 (388)
T PRK08637 380 IYKAIKDL 387 (388)
T ss_pred HHHHHHhc
Confidence 88877654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 143 | ||||
| 3mbb_A | 514 | Crystal Structure Of Stspl - Apo Form, After Treatm | 1e-15 | ||
| 3mau_A | 514 | Crystal Structure Of Stspl In Complex With Phosphoe | 1e-15 | ||
| 3maf_B | 518 | Crystal Structure Of Stspl (Asymmetric Form) Length | 1e-15 | ||
| 3mad_A | 514 | Crystal Structure Of Stspl (Symmetric Form) Length | 1e-15 | ||
| 3maf_A | 518 | Crystal Structure Of Stspl (Asymmetric Form) Length | 1e-15 | ||
| 3mc6_C | 497 | Crystal Structure Of Scdpl1 Length = 497 | 1e-10 | ||
| 3mc6_A | 497 | Crystal Structure Of Scdpl1 Length = 497 | 1e-10 |
| >pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment With Semicarbazide Length = 514 | Back alignment and structure |
|
| >pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With Phosphoethanolamine Length = 514 | Back alignment and structure |
|
| >pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form) Length = 518 | Back alignment and structure |
|
| >pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form) Length = 514 | Back alignment and structure |
|
| >pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form) Length = 518 | Back alignment and structure |
|
| >pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1 Length = 497 | Back alignment and structure |
|
| >pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1 Length = 497 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 7e-39
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
Y++ TR I++ ++ +R++ L I G P VIA+ SD +IY++ + RGW N
Sbjct: 375 YLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASDELNIYQVMEEMAGRGWRLN 433
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDR 122
L P H+ +T HT+PGV D+F++D+++ +A + +P + G+ +YG + + P
Sbjct: 434 GLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPE-KATGMAPVYGMAAAAPPE 492
Query: 123 SIIGDFTRYYIDATYYTPDSK 143
++ +ID Y
Sbjct: 493 -LVRQVLTGFIDLLYEVHHHH 512
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 1e-37
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 3 YVNTTRSIIETVKYIEKELR-SMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNT 61
Y+ + + I+ +K ++ ++ L I G P SVI+ S +I+ LS L+K+GW+
Sbjct: 343 YIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHF 402
Query: 62 NSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNPG--LQLEGVMAMYGKSHSI 119
N+LQ PV +H+ T + V D+ +R + + +G A+YG + S+
Sbjct: 403 NALQKPVALHMAFTRLS--AHVVDEICDILRTTVQELKSESNSKPSPDGTSALYGVAGSV 460
Query: 120 PDRSIIGDFTRYYIDATYYTP 140
+ ++DA Y
Sbjct: 461 KTAGVADKLIVGFLDALYKLG 481
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 5e-25
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 9/133 (6%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIF----GTPATSVIALGSDVFHIYRLSSGLNKRG 58
Y N + E + + + L + I G P + S + +S L + G
Sbjct: 340 YRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYG 399
Query: 59 WNTNSLQF-PVGIHICITHMHTQPGV----ADKFISDVREELAIIMQNPGLQLEGVMAMY 113
W + P HI + + + A++ + D+ + + + + P + +
Sbjct: 400 WIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQ 459
Query: 114 GKSHSIPDRSIIG 126
KS S D ++
Sbjct: 460 EKSESNSDNLMVT 472
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 4e-18
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 16/130 (12%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDG--LFIFGTPATSVIALGS-------DVFHIYRLSSG 53
Y + + Y+ E+ + G P + A+ + +Y LS
Sbjct: 325 YTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSER 384
Query: 54 LNKRGWNTNSLQFP-VGIHICITHMHTQPG----VADKFISDVREELAIIMQNPGLQLEG 108
L RGW + I + + + G A+ + D + L + +P LQ
Sbjct: 385 LRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHPKLQGIA 444
Query: 109 VMAMYGKSHS 118
+ H+
Sbjct: 445 QQNSF--KHT 452
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-17
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN 62
+E Y+ K+L+ P +++A+ + + L RG +
Sbjct: 307 QRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDE--DYKEVCKKLRDRGIYVS 363
Query: 63 SLQFPVGIHICITHMHTQPGVADKFISDVRE 93
+ I + H + D FI +
Sbjct: 364 VCNCVKALRIVVMP-HIKREHIDNFIEILNS 393
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 143 | |||
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.87 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.86 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.32 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.19 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 98.91 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 98.86 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 98.84 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 98.68 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 98.47 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 98.46 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 98.43 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 98.36 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 98.28 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 98.15 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 98.06 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 98.05 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 97.96 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 97.95 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 97.93 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 97.87 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 97.86 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 97.81 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 97.79 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 97.78 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 97.77 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 97.71 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 97.68 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 97.66 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 97.64 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 97.61 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 97.6 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 97.6 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 97.59 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 97.58 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 97.53 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 97.53 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 97.51 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 97.49 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 97.47 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 97.46 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 97.43 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 97.42 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 97.39 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 97.38 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 97.33 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 97.31 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 97.29 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 97.27 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 97.25 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 97.2 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 97.16 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 97.16 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 97.15 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 97.14 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 97.14 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 97.13 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 97.11 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 97.11 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 97.08 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 97.07 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 97.05 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 97.04 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 97.02 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 96.95 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 96.94 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 96.93 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 96.92 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 96.91 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 96.89 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 96.86 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 96.86 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 96.82 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 96.81 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 96.81 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 96.79 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 96.76 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 96.75 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 96.72 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 96.71 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 96.7 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 96.68 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 96.61 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 96.58 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 96.58 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 96.53 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 96.47 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 96.4 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 96.37 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 96.36 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 96.34 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 96.33 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 96.33 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 96.31 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 96.3 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 96.3 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 96.29 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 96.29 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 96.28 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 96.24 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 96.21 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 96.18 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 96.14 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 96.11 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 96.09 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 96.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 95.98 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 95.89 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 95.88 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 95.88 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 95.86 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 95.83 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 95.8 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 95.69 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 95.66 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 95.62 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 95.56 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 95.54 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 95.5 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 95.5 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 95.42 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 95.38 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 95.35 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 95.35 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 95.29 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 95.28 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 95.27 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 95.22 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 95.15 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 95.11 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 95.04 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 95.04 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 94.97 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 94.89 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 94.82 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 94.81 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 94.75 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 94.74 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 94.7 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 94.68 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 94.62 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 94.52 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 94.49 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 94.39 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 94.38 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 94.33 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 94.31 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 94.25 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 94.23 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 94.2 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 94.17 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 94.14 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 94.07 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 94.02 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 93.97 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 93.75 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 93.72 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 93.68 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 93.47 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 93.38 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 93.33 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 93.28 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 93.26 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 93.24 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 93.05 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 93.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 92.61 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 92.51 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 92.38 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 92.28 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 92.14 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 92.02 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 91.97 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 91.69 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 91.62 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 91.6 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 91.49 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 90.68 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 90.62 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 90.52 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 90.36 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 90.34 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 90.06 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 90.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 89.36 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 89.06 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 88.89 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 88.71 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 88.61 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 88.54 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 88.07 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 88.06 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 88.01 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 87.6 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 87.56 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 87.21 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 86.64 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 86.6 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 86.55 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 85.89 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 85.86 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 85.72 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 85.69 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 85.47 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 84.66 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 84.18 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 83.96 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 83.72 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 83.44 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 83.27 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 82.51 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 82.42 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 82.13 |
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=165.25 Aligned_cols=140 Identities=26% Similarity=0.453 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhh-CCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRS-MDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+||.+..+++.+++++++++|++ ++|++++++|..++|+|...+.+.+++.+.|.++||.++..+.|..+|++++ .+
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~--~~ 418 (497)
T 3mc6_A 341 NGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT--RL 418 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe--CC
Confidence 37899999999999999999999 7999999999999999998888999999999999999999888989999998 34
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCCC--CCChhhHHhhhccCCCcchHHHHHHHHHHhhcCCCCC
Q psy10208 80 QPGVADKFISDVREELAIIMQNPGLQ--LEGVMAMYGKSHSIPDRSIIGDFTRYYIDATYYTPDS 142 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~~~p~~~--~~~~a~~Yg~~~~ipd~~~v~~~~~~~~d~~y~~~~~ 142 (143)
+++.+++|+++|+++++.+++++..+ .++.+++||+++++|+++.|++++..|+|++|++||+
T Consensus 419 t~e~i~~~~~~L~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (497)
T 3mc6_A 419 SAHVVDEICDILRTTVQELKSESNSKPSPDGTSALYGVAGSVKTAGVADKLIVGFLDALYKLGPG 483 (497)
T ss_dssp TTCTHHHHHHHHHHHHHHHTCC-----------------------CCTHHHHHHHHHTTCC----
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcCcCCCCCCCCccccccccCCChHHHHHHHHHHHHHHccCCCC
Confidence 57899999999999999999887655 6788999999999999999999999999999999875
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=161.05 Aligned_cols=136 Identities=30% Similarity=0.620 Sum_probs=125.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
||.++.+++.++++++.++|++++|++++++|. .++.|..++.+..++.++|.++||.++...+|..+|+++++.++++
T Consensus 374 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~ 452 (514)
T 3mad_A 374 GYLDATRRILQAADRLKAGVRAIPSLKILGDPL-WVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEP 452 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCS-SEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGST
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCe-EEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCH
Confidence 688999999999999999999999999988774 5899988888999999999999999988888999999999889888
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCChhhHHhhhccCCCcchHHHHHHHHHHhhcCCC
Q psy10208 82 GVADKFISDVREELAIIMQNPGLQLEGVMAMYGKSHSIPDRSIIGDFTRYYIDATYYTP 140 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~~~~p~~~~~~~a~~Yg~~~~ipd~~~v~~~~~~~~d~~y~~~ 140 (143)
+.+++|++.|+++++++++++... +++|++||+++++|| ++|++++..|+|++|.+-
T Consensus 453 e~i~~~l~~L~~~l~~~~~~~~~~-~~~~~~yg~~~~~~~-~~~~~~~~~~~~~~~~~~ 509 (514)
T 3mad_A 453 GVVDRFLADLQDAVAQVRAHPEKA-TGMAPVYGMAAAAPP-ELVRQVLTGFIDLLYEVH 509 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHCTTCC-CTTHHHHHHHHHSCH-HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC-CCceehhhhcccCCH-HHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887665 788999999999999 999999999999999863
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-12 Score=105.93 Aligned_cols=104 Identities=14% Similarity=0.292 Sum_probs=90.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecC---CCCHHHHHHHHhhcCceecCCCCCC------ee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSD---VFHIYRLSSGLNKRGWNTNSLQFPV------GI 70 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~~P~------~i 70 (143)
+||.++.++..+++++|+++|+++++|+++.+ |.+|+|+|+.+ .++.+++.++|+++||.++.++.|. .+
T Consensus 338 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~l 417 (502)
T 3hbx_A 338 EGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVL 417 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEE
Confidence 47899999999999999999999999999987 89999999864 3788999999999999998776663 48
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHcCCCCC
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQNPGLQ 105 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~~ 105 (143)
|++++. .++++.++.|++||+++++.++++|...
T Consensus 418 Risv~~-~~t~edid~li~~L~~~l~~l~~~~~~~ 451 (502)
T 3hbx_A 418 RVVIRE-DFSRTLAERLVIDIEKVMRELDELPSRV 451 (502)
T ss_dssp EEECCT-TCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred EEEeCC-CCCHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999985 4557999999999999999999988654
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-11 Score=97.14 Aligned_cols=103 Identities=17% Similarity=0.331 Sum_probs=87.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEecCC-----CCHHHHHHHHhhcCceecCCCCCC---
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGSDV-----FHIYRLSSGLNKRGWNTNSLQFPV--- 68 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~~~-----~~i~~l~d~L~~rGW~v~~~~~P~--- 68 (143)
+||.++.+++.+.++++.++|++++|++++.+ |..++|+|+.++ +|..++.++|.++||.+..+..|.
T Consensus 323 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~ 402 (452)
T 2dgk_A 323 EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEAT 402 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccC
Confidence 47899999999999999999999999999875 688999998653 577999999999999876654442
Q ss_pred ---eeeEEEEecccChhHHHHHHHHHHHHHHHHHcCCCC
Q psy10208 69 ---GIHICITHMHTQPGVADKFISDVREELAIIMQNPGL 104 (143)
Q Consensus 69 ---~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~~ 104 (143)
.+|++++..+ +++.++.|+++|+++++.++++|..
T Consensus 403 ~~~~lRis~~~~~-t~e~id~li~~l~~~~~~~~~~~~~ 440 (452)
T 2dgk_A 403 DIVVMRIMCRRGF-EMDFAELLLEDYKASLKYLSDHPKL 440 (452)
T ss_dssp TCEEEEEECCTTC-CHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CeEEEEEEecCCC-CHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5899998755 4799999999999999999987643
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-09 Score=89.52 Aligned_cols=100 Identities=11% Similarity=-0.048 Sum_probs=85.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC--CHHHHHHHHhhcCceecCCCC---CCeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF--HIYRLSSGLNKRGWNTNSLQF---PVGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~--~i~~l~d~L~~rGW~v~~~~~---P~~ihi~v~ 75 (143)
+||.++.++..+++++++++|+++|||+++++|.+++|+|+..+. +..++.++|.++|+.+..++. ...+|++++
T Consensus 369 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~ 448 (475)
T 3k40_A 369 ENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAIC 448 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeC
Confidence 488999999999999999999999999999999999999987532 346899999999997655433 235899999
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.++++.+.++.+++-|+++.+++.+
T Consensus 449 ~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 449 SRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 8888899999999999999887653
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.6e-09 Score=85.95 Aligned_cols=102 Identities=8% Similarity=-0.042 Sum_probs=84.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCC--HHHHHHHHhhcCceecCC---CCCCeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFH--IYRLSSGLNKRGWNTNSL---QFPVGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~--i~~l~d~L~~rGW~v~~~---~~P~~ihi~v~ 75 (143)
+||.++.+++.+.++++.++|+++|||+++++|..++|+|+..+.+ -.++.++|.++||.+... ..+..+|++++
T Consensus 372 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~ 451 (486)
T 1js3_A 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAIC 451 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeC
Confidence 4789999999999999999999999999999999999999875432 378999999999875432 22456899988
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.++++.+.++.+++.|+++++.+.+..
T Consensus 452 ~~~~t~~di~~~~~~l~~~~~~~~~~~ 478 (486)
T 1js3_A 452 SRKVESGHVRLAWEHIRGLAAELLAAE 478 (486)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888999999999999998887653
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-09 Score=87.01 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC--CHHHHHHHHhhcCceecCCCC---CCeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF--HIYRLSSGLNKRGWNTNSLQF---PVGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~--~i~~l~d~L~~rGW~v~~~~~---P~~ihi~v~ 75 (143)
+||.++.++..+++++++++|+++|||+++.+|.+++|+|+..+. .-.++.++|.++|+.+..++. ...+|++++
T Consensus 376 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~ 455 (481)
T 4e1o_A 376 KNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVT 455 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeC
Confidence 488999999999999999999999999999999999999987542 246899999999987655432 235899999
Q ss_pred ecccChhHHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..+++++.++.+++-|+++.+++.
T Consensus 456 ~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 456 SQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 888889999999999999887664
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.1e-08 Score=80.81 Aligned_cols=98 Identities=9% Similarity=0.096 Sum_probs=80.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC--CH----HHHHHHHhhcCceecCCCC---CCeee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF--HI----YRLSSGLNKRGWNTNSLQF---PVGIH 71 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~--~i----~~l~d~L~~rGW~v~~~~~---P~~ih 71 (143)
+||.++.+++.+.++++.++|++++||+++++|..++|+|+..+. +. .++.+.|.++|+.+...+. ...+|
T Consensus 390 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lR 469 (497)
T 2qma_A 390 KALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALK 469 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEE
Confidence 378899999999999999999999999999999999999986532 22 3567888999998865432 23589
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++++..++++.++.+++.|+++++++
T Consensus 470 is~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 470 FTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 988666778899999999999987653
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-07 Score=76.97 Aligned_cols=96 Identities=9% Similarity=0.033 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC---------CCH--------HHHHHHHhhcCceecC
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV---------FHI--------YRLSSGLNKRGWNTNS 63 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~---------~~i--------~~l~d~L~~rGW~v~~ 63 (143)
+||.++.+++.+.++++.++|++++||+++++|.++.|+|+..+ .++ ..+.+.|.++|+.+..
T Consensus 397 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~ 476 (515)
T 2jis_A 397 QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIG 476 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999999999999999999988999996421 121 1267888899987643
Q ss_pred CC----CCCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 64 LQ----FPVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 64 ~~----~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
++ .+..+|++++...++++.++.+++.|+++.+
T Consensus 477 ~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 477 YQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp EEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 22 2346899996567788999999999988764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-07 Score=78.67 Aligned_cols=97 Identities=8% Similarity=0.077 Sum_probs=76.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEec--cCceeEEEEecCCCC-----------------HHHHHHHHhhcCcee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFG--TPATSVIALGSDVFH-----------------IYRLSSGLNKRGWNT 61 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg--~p~l~vVaf~~~~~~-----------------i~~l~d~L~~rGW~v 61 (143)
+||.++.+++.+.++++.++|++++||++++ +|..++|+|...+-+ ...+.++|.++|+.+
T Consensus 382 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~ 461 (504)
T 2okj_A 382 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTM 461 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999999999998 689999999752210 246889999999754
Q ss_pred cCC-CC---CCeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 62 NSL-QF---PVGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 62 ~~~-~~---P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
..+ .. +..+|++++...++++.++.+++-|+++.++
T Consensus 462 ~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 462 VGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 332 11 2468999986677889999999999887654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=71.74 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecCCCCHHHHHHHHhhcCcee--cCCC-C-CCeeeEEEEe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSDVFHIYRLSSGLNKRGWNT--NSLQ-F-PVGIHICITH 76 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~~~~i~~l~d~L~~rGW~v--~~~~-~-P~~ihi~v~~ 76 (143)
|+.++.+++.+.++++.++|++++|+++.++ +.+.+|.|+.. .+..++.++|.++||.+ .... + +..+|++++.
T Consensus 341 g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~ 419 (438)
T 1wyu_A 341 GLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP-KDPEAVRRALAERGFHGATPVPREYGENLALFAATE 419 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS-SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC-CCHHHHHHHHHHCCceeccccccccCCCeEEEEecc
Confidence 6888999999999999999999999999886 56677778654 57889999999999998 3222 3 4579999985
Q ss_pred cccChhHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREEL 95 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai 95 (143)
..+++.++.|++.|++++
T Consensus 420 -~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 420 -LHEEEDLLALREALKEVL 437 (438)
T ss_dssp -TCCHHHHHHHHHHHHHHC
T ss_pred -cCCHHHHHHHHHHHHHHh
Confidence 445788899999887753
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.4e-07 Score=76.83 Aligned_cols=100 Identities=9% Similarity=0.087 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEec--cCceeEEEEecCCCC-----------------HHHHHHHHhhcCcee
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFG--TPATSVIALGSDVFH-----------------IYRLSSGLNKRGWNT 61 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg--~p~l~vVaf~~~~~~-----------------i~~l~d~L~~rGW~v 61 (143)
+|+.++.+++.+++++++++|+++|||+++. +|..++|+|+..+.. ...+.++|.++|..+
T Consensus 385 ~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~ 464 (511)
T 3vp6_A 385 VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTM 464 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEE
Confidence 4789999999999999999999999999998 699999999742111 125889999999655
Q ss_pred cCCC-CC---CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 62 NSLQ-FP---VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 62 ~~~~-~P---~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
..++ .+ ..+|++++.+.++.+.++.+++-|++.-+.+-.
T Consensus 465 ~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~~ 507 (511)
T 3vp6_A 465 VGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLHH 507 (511)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC----
T ss_pred EEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4432 22 248999977788888999999988887665543
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.28 E-value=4e-06 Score=66.23 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
+|.+..+++.+.++++.++|+++ |++++.+|..+++.|...+ ..++.+.|.++|+.+.....|..+|+++.. .+++
T Consensus 306 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~-~~~~ 381 (397)
T 3f9t_A 306 GQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDED--YKEVCKKLRDRGIYVSVCNCVKALRIVVMP-HIKR 381 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTT--HHHHHHHHHHTTCBCEECSSSSEEEEECCT-TCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCC--HHHHHHHHHhCCeEEeccCCCCEEEEEEcC-CCCH
Confidence 57788899999999999999999 9999989999999998764 678999999999999888878899999874 4567
Q ss_pred hHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELA 96 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~ 96 (143)
+.++++++.|+++++
T Consensus 382 e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 382 EHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhC
Confidence 899999999988754
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-05 Score=61.59 Aligned_cols=99 Identities=6% Similarity=0.078 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--e-eEEEEecCCCCHHHHHHHHhhcCceecCCCC------------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--T-SVIALGSDVFHIYRLSSGLNKRGWNTNSLQF------------ 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l-~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~------------ 66 (143)
|+.++.++..+.++++.++|++++|+++.+.+. . +++.|..++.+-.++.+.|.++|..+.....
T Consensus 253 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~ 332 (382)
T 4hvk_A 253 EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVL 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHH
Confidence 456778888999999999999999999887542 2 4788877777888999999999998875321
Q ss_pred ----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 67 ----------PVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 67 ----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+..+|+++.. ..+.+.++.+++.|+++++.+++.
T Consensus 333 ~~~g~~~~~~~~~iRl~~~~-~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 333 MACGLKHEEAHGTLLLTLGR-YNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp HHTTCCHHHHHTEEEEECCT-TCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCChhhcCCeEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3568998875 345789999999999999988764
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.6e-06 Score=68.76 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhC----------CCeeEeccC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCCCC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSM----------DGLFIFGTP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFP 67 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i----------~g~~vlg~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P 67 (143)
|+.++.++..+.++++.+.|+++ +|+++++.+ ..+.++|... .+..++.+.|.++|+.+. ...|
T Consensus 353 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~Gi~v~-~~~~ 430 (465)
T 3e9k_A 353 TMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEKRGVVCD-KRNP 430 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTTTEECE-EETT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHCCEEEe-cCCC
Confidence 46778889999999999999986 799998754 2678888765 455688999999999886 3447
Q ss_pred CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 68 VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 68 ~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+|+++++..++.+.+++|++.|+++++..
T Consensus 431 ~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 431 NGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp TEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 7899998666777899999999999987654
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.9e-05 Score=59.94 Aligned_cols=98 Identities=6% Similarity=0.091 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecCCCCHHHHHHHHhhcCceecCCCC------------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF------------ 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~------------ 66 (143)
|+.++.++..+.++++.++|+++||+++.+++. .+++.|...+.+..++.+.|.++|..+.....
T Consensus 253 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~ 332 (382)
T 4eb5_A 253 EWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVL 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHH
Confidence 456778888899999999999999999876532 34677776667888999999999988865421
Q ss_pred ----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 67 ----------PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 67 ----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+..+|+++.. ..+++.++.+++.|+++++.++.
T Consensus 333 ~~~g~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 333 MACGLKHEEAHGTLLLTLGR-YNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp HHTTCCHHHHTTEEEEECCT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCChhccCCeEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3468888753 34578999999999999998876
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=9.2e-05 Score=58.72 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----------~P~~ 69 (143)
|+.++.++..+.++++.++|++++|+++++++ ..++++|..++.+-.++.+.|.++|-.+.... .+..
T Consensus 298 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~ 377 (406)
T 1kmj_A 298 GLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAM 377 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCe
Confidence 45567778888999999999999999988653 67788887666678889999999998775422 2567
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+|+++.. ..+++.++.+++-|+++++.+
T Consensus 378 iRis~~~-~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 378 CRASLAM-YNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp EEEECCT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeec-CCCHHHHHHHHHHHHHHHHhh
Confidence 8998874 335789999999999988765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=58.62 Aligned_cols=98 Identities=11% Similarity=0.182 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----ceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP-----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ----------- 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~----------- 65 (143)
|+.++.++..+.++++.++|++++|++++..+ ..++++|..++.+..++.+.|.++|..+....
T Consensus 302 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g 381 (420)
T 1t3i_A 302 GMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFD 381 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcC
Confidence 46677888889999999999999999988754 36788887666677889999999998886542
Q ss_pred CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 66 FPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 66 ~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+..+|+++.. ..+++.++.+++-|+++++.++.
T Consensus 382 ~~~~iRis~~~-~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 382 ASGSARASLYF-YNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CCCCEEEECCT-TCCHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 15578888874 34578999999999999887644
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00013 Score=57.50 Aligned_cols=98 Identities=16% Similarity=0.068 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCC-CC-CeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-FP-VGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~P-~~ihi~v~ 75 (143)
|+.++.+++.+.++++.++|+++ |+++...+ ...++.|..++.+..++.+.|.++|..+.... .| ..+|+++.
T Consensus 263 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~ 341 (384)
T 3zrp_A 263 GIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHM 341 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEEEEecc
Confidence 56778888999999999999999 99988755 35677888776888999999999998877544 33 56888876
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
. .++++.++.+++.|+++++.++..
T Consensus 342 ~-~~~~e~i~~~~~~l~~~l~~~~~~ 366 (384)
T 3zrp_A 342 G-WVTPNDAIIAISVIERTLRKLGEP 366 (384)
T ss_dssp S-SCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred c-cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 5 356789999999999999988754
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00013 Score=57.94 Aligned_cols=100 Identities=11% Similarity=0.071 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--cee-EEEEecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATS-VIALGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~-vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~ 73 (143)
|+.++.+++.+.++++.++|+++ |++++.++ ..+ ++.|... +.+-.++.+.|.++ |..+.... .+..+|++
T Consensus 280 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~ 358 (393)
T 2huf_A 280 GLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIG 358 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEE
Confidence 46677888899999999999999 89887653 234 7777764 57788999999865 99887543 24578998
Q ss_pred EEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 74 ITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
++..+++++.++++++-|+++++.++...
T Consensus 359 ~~~~~~~~e~i~~~~~~l~~~~~~~~~~~ 387 (393)
T 2huf_A 359 LMGQNATTERVDRVLQVFQEAVAAVKPDV 387 (393)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHHHHHCC--
T ss_pred cccCcCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 86545567889999999999998887654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00014 Score=58.38 Aligned_cols=93 Identities=9% Similarity=0.004 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEec-cC--cee-EEEEec-CCCCHHHHHHHHhhcCceecCCC--C-CCeeeEEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFG-TP--ATS-VIALGS-DVFHIYRLSSGLNKRGWNTNSLQ--F-PVGIHICI 74 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p--~l~-vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~--~-P~~ihi~v 74 (143)
+.++.++..+.++++.++|++++|+++.. +| ..+ +++|.. ++.+-.++.+.|.++|..+.... . +..+|+++
T Consensus 296 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~ 375 (398)
T 2fyf_A 296 LDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAM 375 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEe
Confidence 67788889999999999999999999885 34 456 888876 35788899999999999885421 1 35689998
Q ss_pred EecccChhHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. .++++.++++++-|+++++
T Consensus 376 ~~-~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 376 FP-AVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp CT-TSCHHHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHHHH
Confidence 75 4567899999999988765
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00018 Score=55.80 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ceeEEEEecC-CCCHHHHHHHHhhcCceecCCC---CCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~ 75 (143)
|+.++.+++.+.++++.++|+++ |+++.+++ ...+++|..+ +.+..++.+.|.++|..+.... .+..+|+++.
T Consensus 252 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~ 330 (353)
T 2yrr_A 252 GVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLM 330 (353)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecC
Confidence 56778888999999999999998 99988754 3456677763 6788899999999998886543 2456899886
Q ss_pred ecccChhHHH-HHHHHHHHHHH
Q psy10208 76 HMHTQPGVAD-KFISDVREELA 96 (143)
Q Consensus 76 ~~h~~~~~~~-~fl~Dl~~ai~ 96 (143)
..++. +.++ ++++-|+++++
T Consensus 331 ~~~~~-~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 331 GEGAR-REAYQAFLKALDRALA 351 (353)
T ss_dssp GGGSC-HHHHHHHHHHHHHHHH
T ss_pred ccCCH-HHHHHHHHHHHHHHHh
Confidence 54554 4555 99999988765
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=97.79 E-value=5.6e-05 Score=62.91 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-Cce--eEEEEecCCCCHHHHHHHHhhcCceecCCCCC----CeeeEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PAT--SVIALGSDVFHIYRLSSGLNKRGWNTNSLQFP----VGIHICI 74 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l--~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P----~~ihi~v 74 (143)
|+.+..+++.+.++++.++|+++ |+++..+ +.. .++.| ..+.+..++.++|.++||.++...+| ..+|+++
T Consensus 341 ~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~ 418 (474)
T 1wyu_B 341 GLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-PEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEP 418 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-STTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-CCCCCHHHHHHHHHHCCccccccccccccCCEEEEEe
Confidence 56777899999999999999998 8988443 333 35544 33568899999999999998654443 4688888
Q ss_pred EecccChhHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+. ..+++.+++|++.|++++++
T Consensus 419 ~~-~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 419 TE-TEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CT-TSCHHHHHHHHHHHHHHHTS
T ss_pred ec-CCCHHHHHHHHHHHHHHHHh
Confidence 74 33468999999999988654
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=57.19 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecC-CCCHHHHHHHHhhcCceecCCCC---CCeeeEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQF---PVGIHICI 74 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~---P~~ihi~v 74 (143)
|+.++.++..+.++++.++|+++ |+++...+ ..+++.|..+ +.+..++.+.|.++|..+..... +..+|+++
T Consensus 278 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~ 356 (386)
T 2dr1_A 278 GKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGH 356 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEEC
Confidence 67788899999999999999998 89887643 3567888764 56888999999999998876542 45789888
Q ss_pred EecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 75 THMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.. ..+++.++++++-|+++++.+...|
T Consensus 357 ~~-~~~~~~i~~~~~~l~~~~~~~~~~~ 383 (386)
T 2dr1_A 357 MG-YMKFEDIQEMLDNLREVINELKKQK 383 (386)
T ss_dssp CS-SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 75 4567899999999999998876543
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0002 Score=57.20 Aligned_cols=97 Identities=11% Similarity=-0.006 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~ 73 (143)
|+.++.+++.+.++++.++|+++ |+++.+.+. ..+++|... ..+..++.+.|.++ |..+.... .+..+|++
T Consensus 287 g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~ 365 (416)
T 3isl_A 287 GLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIG 365 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEe
Confidence 56788889999999999999997 999886543 467888874 67888999999887 99887543 34578999
Q ss_pred EEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+...++.++.++++++-|+++++.+.
T Consensus 366 ~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 366 TMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 87656655559999999999988764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00032 Score=54.62 Aligned_cols=94 Identities=14% Similarity=-0.072 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeEEEEecC-CCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHM 77 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~ 77 (143)
+.++.+++.+.++++.++|+++ |+++..++ ..+++.|..+ +.+-.++.+.|.++|..+.... .+..+|+++..
T Consensus 250 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~- 327 (352)
T 1iug_A 250 LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMG- 327 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccc-
Confidence 4567788889999999999998 99987653 4557778765 5788899999999999887654 24578988875
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+++.++++++-|+++++++
T Consensus 328 ~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 328 AYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 345788999999999988766
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00025 Score=55.31 Aligned_cols=92 Identities=14% Similarity=0.248 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-CCeeeEEEEecccC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-PVGIHICITHMHTQ 80 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-P~~ihi~v~~~h~~ 80 (143)
+|.+..++..+.++++.++|++++|+++..++..+.+.+..+ .++.++|.++|..+....+ +..+|+++.. .++
T Consensus 261 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~-~~~ 335 (356)
T 1v72_A 261 LWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----SAMIDALLKAGFGFYHDRWGPNVVRFVTSF-ATT 335 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----HHHHHHHHHTTCBCBCSSSSTTEEEEECCT-TCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC----HHHHHHHHhcCeEEeccccCCCeEEEEecC-CCC
Confidence 356677788889999999999999999887666666666543 2789999999998874333 4678888653 445
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELAII 98 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~ 98 (143)
++.++++++-|+++++..
T Consensus 336 ~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 336 AEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp HHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 788999999888876544
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00038 Score=54.24 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cC---ceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG-TP---ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICI 74 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p---~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v 74 (143)
|+.++.++..+.++++.++|+++||++++. ++ ...++.|...+ +..++.+.|.++|..+.... .+..+|+++
T Consensus 263 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~ 341 (362)
T 3ffr_A 263 SADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM-LPGEINKILEPFDMAVGAGYGSKKETQIRIAN 341 (362)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS-CHHHHHHHHGGGTEEEEECSGGGTTTEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC-CHHHHHHHHHHCCeEEecCccccCCCEEEEEC
Confidence 567788889999999999999999999986 22 35677787666 88999999999999887532 245699998
Q ss_pred EecccChhHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREE 94 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~a 94 (143)
.. ..+++.++++++-|++.
T Consensus 342 ~~-~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 342 FP-AHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp CT-TSCHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHH
Confidence 75 44567888888877764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00035 Score=55.40 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cC---ceeEEEEecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG-TP---ATSVIALGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p---~l~vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi 72 (143)
|+.++.+++.+.++++.++|+++ |+++.. ++ ..+++.|..+ +.+-.++.+.|.++ |..+.... .+..+|+
T Consensus 267 g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi 345 (392)
T 2z9v_A 267 GPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRI 345 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEE
Confidence 56778888899999999999998 899877 32 3567888764 67888999999998 98886543 3557888
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
++.....+++.++++++-|+++++.++
T Consensus 346 ~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 346 GHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp ECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred eCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 864424567899999999999887654
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00056 Score=53.89 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---Cce-eEEEEecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PAT-SVIALGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l-~vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi 72 (143)
|+.++.+++.+.++++.++|+++ |+++... +.. .+++|... ..+..++.+.|.++ |..+.... .+..+|+
T Consensus 284 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi 362 (393)
T 3kgw_A 284 GLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRI 362 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEE
Confidence 56778888999999999999999 8988742 223 45567653 67888999999888 99887643 2456888
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+++...++++.++++++-|+++++.+++.
T Consensus 363 ~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 363 GLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp ECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred EecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 88554557899999999999998876543
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00048 Score=54.81 Aligned_cols=98 Identities=11% Similarity=0.008 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~ 73 (143)
|+.++.+++.+.++++.++|+++ |+++..++. ..+++|..+ +.+..++.+.|.++ |..+.... .+..+|++
T Consensus 287 g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~ 365 (411)
T 3nnk_A 287 GLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIG 365 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEe
Confidence 56778888999999999999998 898876542 567888764 67888999999876 98886432 24568988
Q ss_pred EEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 74 ITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++...++++.++++++-|+++++++..
T Consensus 366 ~~~~~~~~~~i~~~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 366 TMGYNARKDCVMTTLSALEAVLNYLKF 392 (411)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred CccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 865555689999999999999887653
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00024 Score=55.39 Aligned_cols=92 Identities=9% Similarity=0.103 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEecc--Ccee-EEEEecC---CCCHHHHHHHHhhcCceecCCC--CCCeeeEEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGT--PATS-VIALGSD---VFHIYRLSSGLNKRGWNTNSLQ--FPVGIHICI 74 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~-vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~--~P~~ihi~v 74 (143)
+.++.+++.+.++++.++|+++ |++++.+ +..+ ++.|..+ +.+..++.+.|.++|..+.... .+..+|+++
T Consensus 264 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~ 342 (366)
T 1m32_A 264 VAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGN 342 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEEC
T ss_pred HhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEec
Confidence 7788889999999999999998 8888765 2344 6777754 5688899999999998886543 355789888
Q ss_pred EecccChhHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
... .+++.++++++-|+++++
T Consensus 343 ~~~-~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 343 IGE-VYAADITALLTAIRTAMY 363 (366)
T ss_dssp CSS-CCHHHHHHHHHHHHHHCT
T ss_pred CCC-CCHHHHHHHHHHHHHHHH
Confidence 753 356888888888887754
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00054 Score=54.65 Aligned_cols=90 Identities=13% Similarity=0.230 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC--ceeEEEEecCCCCHHHHHHHHhhcCceecCCC------------CCC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP--ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ------------FPV 68 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p--~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~------------~P~ 68 (143)
+.++.+++.+.++++.++|++++|+++.+++ ..++++|...+.+..++.+.|.++|..+.... .+.
T Consensus 301 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~ 380 (406)
T 3cai_A 301 MQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGG 380 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCC
Confidence 5677888889999999999999999987653 46788888766778899999999999886543 125
Q ss_pred eeeEEEEecccChhHHHHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
.+|+++.. ..+++.++.+++-|++
T Consensus 381 ~iRis~~~-~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 381 AVTVGLAH-YSTMAEVDQLVRALAS 404 (406)
T ss_dssp CEEEECCT-TCCHHHHHHHHHHHHT
T ss_pred eEEEEeec-CCCHHHHHHHHHHHHH
Confidence 68888864 3346777777776654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00035 Score=54.89 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecCCCCHHHHHHHHhhcCceecCCC-C-----------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----------- 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----------- 66 (143)
++.+..++..+.++++.++|++ +|+++++++. -+.+.|...+.+-.++.+.|.++|..+.... +
T Consensus 257 ~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~ 335 (384)
T 1eg5_A 257 ELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVL 335 (384)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHH
Confidence 3567778888999999999999 6999887531 2466776666678899999999998887632 1
Q ss_pred ----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 67 ----------PVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 67 ----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
+..+|+++.. ..+++.++++++-|+++++++++.+
T Consensus 336 ~~~g~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~~~~~ 380 (384)
T 1eg5_A 336 DAMGVDRRIAQGAIRISLCK-YNTEEEVDYFLKKIEEILSFLDLTG 380 (384)
T ss_dssp HHTTCCHHHHHHEEEEECCT-TCCHHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCChhhcCCeEEEECCC-CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 1457887753 3567899999999999998876654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00058 Score=53.84 Aligned_cols=90 Identities=10% Similarity=0.202 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEec-CCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+.++.++..+.++++.++|++++|++++++ +..++++|.. ++.+..++.+.|.++|..+.....+..+|+++.. ..
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~-~~ 373 (390)
T 1elu_A 295 AEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHY-IT 373 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCT-TC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEeccc-CC
Confidence 567788889999999999999999998863 4567888876 3567889999999999888765556778998853 34
Q ss_pred ChhHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVRE 93 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ 93 (143)
+++.++++++-|++
T Consensus 374 ~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 374 DEEEINHLLARLAD 387 (390)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 45667776665543
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00057 Score=54.67 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhC-C--CeeEeccC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSM-D--GLFIFGTP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICI 74 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i-~--g~~vlg~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v 74 (143)
|+.++.+++.+.++++.++|+++ | |+++++++ ..+++.|...+ -.++.+.|.++|..+.. ..+..+|+++
T Consensus 302 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~gi~~~~-~~~~~lRis~ 378 (416)
T 1qz9_A 302 DMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--GYAVIQALIDRGVIGDY-REPRIMRFGF 378 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--HHHHHHHHHTTTEECEE-ETTTEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--HHHHHHHHHhCCcEecc-CCCCeEEEeC
Confidence 66788889999999999999986 7 89988753 35778887653 67899999999987642 2356789888
Q ss_pred EecccChhHHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
....++++.++.+++-|+++++...
T Consensus 379 ~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 379 TPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHHHHHhccc
Confidence 6334568999999999999987654
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00062 Score=55.49 Aligned_cols=94 Identities=6% Similarity=-0.027 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCe-eEeccCc--e-eEEEEecCC---CCHHHHHHHHhhcCceecCCC-CCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGL-FIFGTPA--T-SVIALGSDV---FHIYRLSSGLNKRGWNTNSLQ-FPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~-~vlg~p~--l-~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~-~P~~ihi~ 73 (143)
|..++.++..+.++++.++|++++|+ ++.++|. . .+++|..++ ++ .++...|.++|-.+..-. ...++|++
T Consensus 258 G~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS 336 (361)
T 3m5u_A 258 GLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHRILGGIRAS 336 (361)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCTTTCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCCccCeEEEE
Confidence 78899999999999999999999877 6665542 2 489998764 44 478899999998875443 34579999
Q ss_pred EEecccChhHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
++. .++.+.++.|++-|++..+.
T Consensus 337 ~~~-~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 337 IYN-ALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CCT-TSCHHHHHHHHHHHHHHHHH
T ss_pred ccC-CCCHHHHHHHHHHHHHHHHh
Confidence 975 55678999999988887543
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0009 Score=52.55 Aligned_cols=98 Identities=9% Similarity=-0.009 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-------ceeEEEEecCCC-CHHHHHHHHhhcCceecCCC-------
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTP-------ATSVIALGSDVF-HIYRLSSGLNKRGWNTNSLQ------- 65 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-------~l~vVaf~~~~~-~i~~l~d~L~~rGW~v~~~~------- 65 (143)
+++.++.++..+.++++.++|++++|+++.+.+ .+..+.|..... +..++.+.|.++|..+...-
T Consensus 244 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~ 323 (375)
T 2fnu_A 244 KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQ 323 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccch
Confidence 356778888999999999999999999987642 122444543234 67889999999998887321
Q ss_pred ----------CC-------CeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 66 ----------FP-------VGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 66 ----------~P-------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.| ..+|+++.. ..+.+.++.+++-|+++++.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~lRi~~~~-~~t~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 324 LYQQLFNTAPLKSAEDFYHAEISLPCHA-NLNLESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHCCCCCHHHHHHHHHEEEECCCT-TCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhcCCCccCChHHHHHHhCEEEecCCC-CCCHHHHHHHHHHHHHHHHHhc
Confidence 12 347777654 3457899999999998877653
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00095 Score=52.93 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---e-eEEEEecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---T-SVIALGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l-~vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi 72 (143)
|+.++.+++.+.++++.++|+++ |++++..+. . .++.|..+ +.+..++.+.|.++ |..+.... .+..+|+
T Consensus 279 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi 357 (396)
T 2ch1_A 279 GLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRV 357 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEE
Confidence 56678888899999999999998 888876432 1 26777764 67888999999875 98886543 3457899
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+++...++++.++++++-|+++++.++.
T Consensus 358 ~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 358 GIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp ECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred ECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 8864455678899999999999887754
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.001 Score=52.43 Aligned_cols=95 Identities=6% Similarity=-0.050 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCe-eEeccC---ceeEEEEecC-CCCHHHHHHHHhhcCceecC-CCCCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGL-FIFGTP---ATSVIALGSD-VFHIYRLSSGLNKRGWNTNS-LQFPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~-~vlg~p---~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~-~~~P~~ihi~v~ 75 (143)
|+.++.++..+.++++.++|++++++ ++.++| ..++++|..+ ..+..++.+.|.++|-.+.. ...+..+|+++.
T Consensus 260 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~ 339 (362)
T 2c0r_A 260 GLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIY 339 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECC
Confidence 57788899999999999999999656 876542 3457788764 35667899999999986643 233567999997
Q ss_pred ecccChhHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
..+ +++.++.|++.|++.++.
T Consensus 340 ~~~-~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 340 NAV-PYESCEALVQFMEHFKRS 360 (362)
T ss_dssp TTS-CHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHh
Confidence 544 478999999999887654
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0011 Score=54.50 Aligned_cols=95 Identities=9% Similarity=0.057 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec-cC--cee-EEEEecCCCC----H-HHHHHHHhhcCceec-CCCCCCeee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG-TP--ATS-VIALGSDVFH----I-YRLSSGLNKRGWNTN-SLQFPVGIH 71 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg-~p--~l~-vVaf~~~~~~----i-~~l~d~L~~rGW~v~-~~~~P~~ih 71 (143)
|..++.++..+.++++.++|++++|+++.. ++ ..+ +|+|..++++ + ..+.+.|.++|-.+. .+..+.++|
T Consensus 270 G~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iR 349 (377)
T 3e77_A 270 GAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIR 349 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEE
Confidence 688899999999999999999999999753 23 334 6999887643 2 356677778897764 344566899
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+++.. ..+.+.++.|++-|++..+.
T Consensus 350 iS~~~-~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 350 ASLYN-AVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EECCT-TSCHHHHHHHHHHHHHHHHH
T ss_pred EECCC-CCCHHHHHHHHHHHHHHHHH
Confidence 99975 55679999999999887653
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0002 Score=59.29 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=66.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEec--CCCCHHHHHHHHhhcCc---eec-------CC-
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGS--DVFHIYRLSSGLNKRGW---NTN-------SL- 64 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~--~~~~i~~l~d~L~~rGW---~v~-------~~- 64 (143)
+||.++.+++.+.++++.++|++++ |+.++. |. ++|+|.. ++. ..+++++|.++|. .+. ..
T Consensus 346 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~-~~-~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~ 422 (456)
T 2z67_A 346 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLD-VE-SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCY 422 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC-CC-CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCEecC-CC-CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCcccccc
Confidence 3788999999999999999999996 876654 55 8888876 443 4789999999874 443 01
Q ss_pred --CCC-CeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 65 --QFP-VGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 65 --~~P-~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
..| ..+|+++.. .++++.+++|++.|++++
T Consensus 423 ~~~~~~~~vr~s~~~-~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 423 LGTYTHDYIVMNAAI-GVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp SSCCSCCEEEEECCT-TCCHHHHHHHHHHHHTC-
T ss_pred ccccCcchhhhhhhc-CCCHHHHHHHHHHHHHHh
Confidence 112 346666653 456799999999998753
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00063 Score=55.35 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCC------CeeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFP------VGIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~ 75 (143)
.++.+++.+.++++.++|+++ |+++.+++ ..+++.|...+ .+..++.+.|.++|..+.....| ..+|+++.
T Consensus 315 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~ 393 (427)
T 2w8t_A 315 HEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC 393 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeC
Confidence 456778888999999999998 89988666 67788877542 45678999999999888664432 35788887
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHcCCC
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQNPG 103 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~~p~ 103 (143)
..| +++.++.+++-|+++++.+...+.
T Consensus 394 ~~~-t~e~i~~~~~~l~~~l~~~~~~~~ 420 (427)
T 2w8t_A 394 AEH-TPAQIQTVLGMFQAAGRAVGVIGL 420 (427)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhCcccc
Confidence 544 478999999999999988776553
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=53.39 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----e-eEEEEecC-----CCCHHHHHHHHhhc-Cce---ecCCC-
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----T-SVIALGSD-----VFHIYRLSSGLNKR-GWN---TNSLQ- 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----l-~vVaf~~~-----~~~i~~l~d~L~~r-GW~---v~~~~- 65 (143)
++.++.++..++++++.++|++++|+++.+.|. . .+++|..+ +.+-.++.+.|.++ |.. +....
T Consensus 264 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~ 343 (418)
T 2c81_A 264 ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYL 343 (418)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCccccccccc
Confidence 355667777888999999999999999986553 1 36666554 56888999999999 988 65432
Q ss_pred -------------------------------CC-------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 66 -------------------------------FP-------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 66 -------------------------------~P-------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+| ..+|+.+...+.+.+.++.+++-|+++++.+
T Consensus 344 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 344 PVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp CGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 12 2477777653316788999999998887654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0013 Score=52.21 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecC-CCCHHHHHHHHhhc-CceecCCC---CCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSD-VFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~ 73 (143)
|+.++.++..+.++++.++|+++ |+++..++. .+++.|..+ +.+..++.+.|.++ |..+.... .+..+|++
T Consensus 292 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis 370 (393)
T 1vjo_A 292 GLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVG 370 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEe
Confidence 45678888999999999999998 898876432 357777763 56888999999988 99886543 25678988
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+...+++++.++++++-|++++
T Consensus 371 ~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 371 LMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHHHHHHh
Confidence 6555666677899998888764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0026 Score=50.94 Aligned_cols=95 Identities=11% Similarity=0.116 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecCCCCHHHHHHHHhhcCceecCCCC--------------
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-------------- 66 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-------------- 66 (143)
.++.++..+.++++.++|++++|+++.+++. ..++.|.....+-.++.+.|.+ ..+.....
T Consensus 283 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~ 360 (423)
T 3lvm_A 283 ATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRA 360 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHH
Confidence 5667788889999999999999999987653 3477777677788899999987 33332110
Q ss_pred --------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 67 --------PVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 67 --------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+..+|+++.. ..+++.++.+++-|+++++.+++.
T Consensus 361 ~g~~~~~~~~~iRi~~~~-~~t~e~i~~~~~~l~~~~~~~~~~ 402 (423)
T 3lvm_A 361 LGLNDELAHSSIRFSLGR-FTTEEEIDYTIELVRKSIGRLRDL 402 (423)
T ss_dssp HTCCHHHHHTEEEEECCT-TCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCccccCceEEEECCC-CCCHHHHHHHHHHHHHHHHHhhcc
Confidence 2568888874 445789999999999999988764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00061 Score=54.58 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--ee-EEEEecCCCCHHHHHHHHhhcCceecCCCC--------CCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--TS-VIALGSDVFHIYRLSSGLNKRGWNTNSLQF--------PVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~-vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~--------P~~i 70 (143)
|+.++.++..+.++++.++|+++ |+++++++. .+ +++|..+..+ ..+...|.++|..+.+-.. ...+
T Consensus 272 g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~l 349 (379)
T 3ke3_A 272 GFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTERDD-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTF 349 (379)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSCHH-HHSSHHHHHTTCCCEECCCCSSCCCTTCCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCCcc-hHHHHHHHHCCeEEeCCccccccccCcCCEE
Confidence 67788888999999999999999 899887642 44 3445443322 2236788999988765432 3468
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
|++++..+ +++.++++++-|+++++.+.
T Consensus 350 Ris~~~~~-t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 350 RLGLFGLD-KLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp EEECCSHH-HHTCHHHHHHHHHHHHHHHH
T ss_pred EEeCCcCC-CHHHHHHHHHHHHHHHHHhc
Confidence 89887645 57899999999999998876
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0016 Score=51.33 Aligned_cols=86 Identities=9% Similarity=0.147 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----CCeeeEEEEec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----PVGIHICITHM 77 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----P~~ihi~v~~~ 77 (143)
+.+..+++.+.++++.+.|+++||+++. .+..+.+.+..+ +..++.+.|.++|..+..... +..+|+++.
T Consensus 275 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~--~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-- 349 (367)
T 3euc_A 275 LDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP--DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-- 349 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--
Confidence 4677788889999999999999999954 444455556554 778999999999998875432 456888865
Q ss_pred ccChhHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREEL 95 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai 95 (143)
+.+.+++|++-|++++
T Consensus 350 --~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 350 --TPEENAQFLEAFAASL 365 (367)
T ss_dssp --CHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 4678899999888764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0021 Score=51.05 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecC--CCCHHHHHHHHhhcCceecCCC---------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQ---------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~---------~P~~ 69 (143)
++.++.++..+.++++.++|+++ |++++++ +..+.+.|... +.+..++.+.|.++|..+.... .+..
T Consensus 278 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~ 356 (407)
T 2dkj_A 278 EFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSG 356 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCc
Confidence 45678888899999999999999 8998875 35667777654 3578889999999998876532 2446
Q ss_pred eeEEEEec---ccChhHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHM---HTQPGVADKFISDVREELAI 97 (143)
Q Consensus 70 ihi~v~~~---h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+|+++... ..+++.++.+++-|+++++.
T Consensus 357 iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 357 IRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp EEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred eeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 88887542 14578999999999999876
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0028 Score=49.53 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCee-EeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEEe
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLF-IFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICITH 76 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~-vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~~ 76 (143)
..+..+...+.++++.+.|+++|+++ +. .|..+.+.|.....+..++.+.|.++|..+.... + +..+|+++.
T Consensus 265 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~- 342 (361)
T 3ftb_A 265 IEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK- 342 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-
Confidence 45677788889999999999999998 54 4555567777666788899999999999886532 2 456888765
Q ss_pred cccChhHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELA 96 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+.+.++.|++.|++..+
T Consensus 343 ---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 343 ---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHh
Confidence 23566777777776543
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.003 Score=49.61 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~ 79 (143)
..+..+++.+.++++.+.|++++|+++.. +..+.+.+..+. +..++.+.|.++|..+.... .+..+|+++.
T Consensus 274 ~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---- 347 (363)
T 3ffh_A 274 IGECRTSNANGIKQYEAFAKRFEKVKLYP-ANGNFVLIDLGI-EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---- 347 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEECC-CCSSEEEEECSS-CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceECC-CCCeEEEEECCC-CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC----
Confidence 45667778889999999999977999763 444566676654 78899999999999887643 3567888865
Q ss_pred ChhHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREE 94 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~a 94 (143)
+++.++.|++.|+++
T Consensus 348 ~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 348 KEEDNSAVIALLEKL 362 (363)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 467889999988875
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0026 Score=50.42 Aligned_cols=98 Identities=9% Similarity=0.010 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC------ceeEEEEecC----CCCHHHHHHHHhhcCceecCCCCC----
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP------ATSVIALGSD----VFHIYRLSSGLNKRGWNTNSLQFP---- 67 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------~l~vVaf~~~----~~~i~~l~d~L~~rGW~v~~~~~P---- 67 (143)
++.+..++..+.++++.+.|++++ +++.+.| ...++.|..+ +.+..++.+.|.++|..+.....|
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~ 336 (393)
T 1mdo_A 258 KLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQ 336 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccC
Confidence 456677788889999999999986 8876533 2335666655 568889999999999988764322
Q ss_pred -------------C-------eeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 68 -------------V-------GIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 68 -------------~-------~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
. .+|+++.. ..+++.++.+++-|+++++....+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~lRi~~~~-~~t~~~i~~~~~~l~~~~~~~~~~ 389 (393)
T 1mdo_A 337 KYYRERFPTLTLPDTEWNSERICSLPLFP-DMTESDFDRVITALHQIAGQGSHH 389 (393)
T ss_dssp HHHHHHSTTCCCHHHHHHHTTEEEECCCT-TCCHHHHHHHHHHHHHHHC-----
T ss_pred hhhhccCCccCChhHHHHHhCEEEecCCC-CCCHHHHHHHHHHHHHHHhcCCcc
Confidence 1 47777653 346789999999999887766543
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0014 Score=51.54 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHHHHHHHHHH-hhCCCeeEec-cC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCCC----CCeee
Q psy10208 2 SYVNTTRSIIETVKYIEKEL-RSMDGLFIFG-TP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF----PVGIH 71 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i-~~i~g~~vlg-~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~----P~~ih 71 (143)
|+.++.++..+.++++.++| +++ |++++. +| ..+++.|..++ ..++.+.|.++|..+..... +..+|
T Consensus 278 ~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~~~~~~~iR 354 (385)
T 2bkw_A 278 GLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD--PPDVIAFLKSHGVVIAGGIHKDIGPKYIR 354 (385)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC--HHHHHHHHHHTTEECBCCCCTTTGGGEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC--HHHHHHHHHHCCeEEeCCCCcccCCCEEE
Confidence 45667788889999999999 998 899875 32 35678887654 67899999999998876432 34678
Q ss_pred EE-EEec--ccChhHHHHHHHHHHHHHHH
Q psy10208 72 IC-ITHM--HTQPGVADKFISDVREELAI 97 (143)
Q Consensus 72 i~-v~~~--h~~~~~~~~fl~Dl~~ai~~ 97 (143)
++ +... .++++.++++++-|++++++
T Consensus 355 is~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 355 IGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp ECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 87 4321 24678999999999887643
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0018 Score=51.61 Aligned_cols=96 Identities=8% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCC---C---CeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQF---P---VGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~---P---~~ihi~v~~ 76 (143)
.+..+++.+.++++.++|+++ |+++. .+..+++.|..+. .+..++.+.|.++|..+..... | ..+|+++..
T Consensus 299 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~ 376 (401)
T 1fc4_A 299 SELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSA 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCC
Confidence 356777888999999999998 88877 3456677766543 4567899999999998865433 2 247887764
Q ss_pred cccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 77 MHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
..+++.++++++-|++++++++-+|
T Consensus 377 -~~~~~~i~~~~~~l~~~~~~~~~~~ 401 (401)
T 1fc4_A 377 -AHTPEQITRAVEAFTRIGKQLGVIA 401 (401)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 3457899999999999988765443
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0016 Score=51.73 Aligned_cols=93 Identities=6% Similarity=-0.028 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecCCCCHHHHHHHHhhcCceecCCC-------------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ------------- 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~------------- 65 (143)
++.++.++..+.++++.++|+ ++|+++.+++. ..++.|...+.+-.++.+.|. +|..+....
T Consensus 281 ~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~ 358 (400)
T 3vax_A 281 EHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVL 358 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHH
Confidence 456778888899999999999 89999987653 248888877778889999999 998775421
Q ss_pred ----C-----CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 66 ----F-----PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 66 ----~-----P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
. +..+|++++....+++.++++++-|+++++
T Consensus 359 ~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 359 RAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp HTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred HHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 1 367899993234446788888888887754
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0057 Score=49.21 Aligned_cols=91 Identities=11% Similarity=0.113 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEe------cc-CceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-----CCee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIF------GT-PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-----PVGI 70 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vl------g~-p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-----P~~i 70 (143)
+.+..+++.+.++++.++|+++ |+++. .. .....+.+..++.+-.++.+.|.++|..+..... +..+
T Consensus 333 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~i 411 (437)
T 3g0t_A 333 FRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAM 411 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCCCCEE
Confidence 5677888889999999999999 99988 34 3344555555577889999999999998875532 2568
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
|+++. +.+.+.++++++-|+++++
T Consensus 412 Ris~~--~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 412 RICTS--LLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp EEECS--SSCGGGHHHHHHHHHHHHH
T ss_pred EEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 99886 3367899999999988765
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0032 Score=49.87 Aligned_cols=93 Identities=8% Similarity=-0.023 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-------CCCeeeEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-------FPVGIHICI 74 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-------~P~~ihi~v 74 (143)
++.++.+++.+.++++.++|++. |+++........+.+.....+ +...|.++|..+.... .+..+|+++
T Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~ 350 (381)
T 1v2d_A 275 FYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGWD---AFRLVEEARVALIPASAFYLEDPPKDLFRFAF 350 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTCC---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChHh---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEe
Confidence 35567788888999999999996 898876543445556554444 7778889999885431 245688887
Q ss_pred EecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 75 THMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
.. +.+.++++++-|+++++..+..
T Consensus 351 ~~---~~~~i~~~~~~l~~~l~~~r~~ 374 (381)
T 1v2d_A 351 CK---TEEELHLALERLGRVVNSPREA 374 (381)
T ss_dssp CS---CHHHHHHHHHHHHHHC------
T ss_pred CC---CHHHHHHHHHHHHHHHhhcccc
Confidence 63 5788999999999988776654
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0035 Score=49.27 Aligned_cols=93 Identities=6% Similarity=0.024 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeEEEEecCCCCHHHHHHHHhhc-CceecCCC---CCCeeeEEEEe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSVIALGSDVFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHICITH 76 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~vVaf~~~~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi~v~~ 76 (143)
|+.++.++..+.++++.++|+++ |+++..++ ...++.|..++.+-.++.+.|.++ |..+.... .+..+|+++..
T Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~ 353 (376)
T 3f0h_A 275 GADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIG 353 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCC
Confidence 56778888889999999999998 78887653 334555665667888999999998 98876542 34568888864
Q ss_pred cccChhHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELA 96 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.++++.++++++-|+++++
T Consensus 354 -~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 354 -ALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp -SCCHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHH
Confidence 4567899999999988764
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0021 Score=51.07 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecC--CCCHHHHHHHHhhcCceecCCC---------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQ---------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~---------~P~~ 69 (143)
++.++.++..+.++++.++|+++ |++++++ ...+.+.+... +.+..++.+.|.++|..+.... .+..
T Consensus 277 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~ 355 (405)
T 2vi8_A 277 DFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSG 355 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCc
Confidence 45677888899999999999999 8998865 34556666543 4577889999999999886532 2446
Q ss_pred eeEEEEec---ccChhHHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHM---HTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 70 ihi~v~~~---h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+|+++... .++++.++.+++-|+++++.++
T Consensus 356 iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 356 IRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp EEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred eEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 88877631 2457889999999988875443
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0012 Score=52.35 Aligned_cols=94 Identities=11% Similarity=0.165 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCC------CeeeEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFP------VGIHICI 74 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v 74 (143)
+..+..+++.+.++++.++|+++ |+++. .|..+.+.|.... .+..++.+.|.++|..+.....| ..+|+++
T Consensus 296 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~ 373 (399)
T 3tqx_A 296 EGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQM 373 (399)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEe
Confidence 35677788899999999999998 88876 5666777776542 45678999999999988754332 3578877
Q ss_pred EecccChhHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. ..+++.++++++-|+++++++
T Consensus 374 ~~-~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 374 SA-VHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp CT-TCCHHHHHHHHHHHHHHHHHT
T ss_pred ec-CCCHHHHHHHHHHHHHHHHHh
Confidence 64 445789999999999988764
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0053 Score=47.91 Aligned_cols=94 Identities=7% Similarity=-0.044 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCe-eEeccC--cee-EEEEecCC-CCHHHHHHHHhhcCceecCC-CCCCeeeEEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGL-FIFGTP--ATS-VIALGSDV-FHIYRLSSGLNKRGWNTNSL-QFPVGIHICIT 75 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~-~vlg~p--~l~-vVaf~~~~-~~i~~l~d~L~~rGW~v~~~-~~P~~ihi~v~ 75 (143)
|+.++.++..+.++++.+.|++++++ ....+| ..+ ++.|..++ .+..++.+.|.++|..+... ..+..+|+++.
T Consensus 259 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~ 338 (360)
T 1w23_A 259 GAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIY 338 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEec
Confidence 56778888999999999999999766 554233 345 78887653 34567888999999887543 23567999887
Q ss_pred ecccChhHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. .+++.++++++-|+++++
T Consensus 339 ~~-~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 339 NA-VPIDACIALRELMIQFKE 358 (360)
T ss_dssp TT-SCHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHh
Confidence 43 356788888888887754
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0064 Score=48.46 Aligned_cols=94 Identities=5% Similarity=-0.085 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CC-CeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCC-------CCCeeeEE
Q psy10208 4 VNTTRSIIETVKYIEKELRS-MD-GLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQ-------FPVGIHIC 73 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~-i~-g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~-------~P~~ihi~ 73 (143)
.+..+.+.+.++++.+.|++ +| |+++......+.+.+... +.+..++.+.|.++|..+.... .+..+|++
T Consensus 291 ~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis 370 (397)
T 2zyj_A 291 ERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLS 370 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEE
Confidence 34555667788889999987 67 688765444456666654 5678899999999999886532 24568888
Q ss_pred EEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+... +++.++++++-|+++++.+.
T Consensus 371 ~~~~--~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 371 YATL--DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp CSSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC--CHHHHHHHHHHHHHHHHHHH
Confidence 7642 57899999999999887654
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0033 Score=50.11 Aligned_cols=92 Identities=10% Similarity=-0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHhh-CCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhc-CceecCCC-------CCCeeeEEE
Q psy10208 5 NTTRSIIETVKYIEKELRS-MDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKR-GWNTNSLQ-------FPVGIHICI 74 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~r-GW~v~~~~-------~P~~ihi~v 74 (143)
++.+...+.++++.+.|++ ++|+++........+.|... +.+..++.+.|.++ |..+.... .+..+|+++
T Consensus 303 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~ 382 (407)
T 2zc0_A 303 GALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNF 382 (407)
T ss_dssp THHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEe
Confidence 4455667788899999987 68888765444456667653 57888999999998 99886532 245688877
Q ss_pred EecccChhHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
... +++.++++++-|+++++.+
T Consensus 383 ~~~--~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 383 SRP--SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp SSS--CTTHHHHHHHHHHHHHHHH
T ss_pred CCC--CHHHHHHHHHHHHHHHHHH
Confidence 643 5689999999999998765
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0096 Score=47.17 Aligned_cols=95 Identities=9% Similarity=0.008 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEecc-----Cc-eeEEEEecCCC---CHHHHHHHHhhcCceecCCCCCC-----
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGT-----PA-TSVIALGSDVF---HIYRLSSGLNKRGWNTNSLQFPV----- 68 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-----p~-l~vVaf~~~~~---~i~~l~d~L~~rGW~v~~~~~P~----- 68 (143)
+.+..++..+.++++.++|++++|+++.++ +. .+++.|..++. +-.++.+.|.++|..+.....|.
T Consensus 252 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~ 331 (388)
T 1b9h_A 252 LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDA 331 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChH
Confidence 345566777889999999999999998873 22 46777877654 56789999999998886532221
Q ss_pred ---------------------------eeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 69 ---------------------------GIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 69 ---------------------------~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
.+++.+.+.+.+++.++.+++-|+++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 332 FWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 25666655442578889999888887653
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0012 Score=52.64 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-CCHHHHHHHHh-hcCceecCCCC---C---CeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-FHIYRLSSGLN-KRGWNTNSLQF---P---VGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~-~rGW~v~~~~~---P---~~ihi~ 73 (143)
|+.++.+++.+.++++.++|+++ |+++++ |..+++.|.... .+..++.+.|. ++|..+..... | ..+|++
T Consensus 299 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis 376 (401)
T 2bwn_A 299 EGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFT 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEE
Confidence 56788888999999999999998 888775 455678887643 45678999995 78998865432 3 257887
Q ss_pred EEecccChhHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+... .+++.++++++-|+++++.
T Consensus 377 ~~~~-~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 377 PSPV-HDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp CCTT-SCHHHHHHHHHHHHHHC--
T ss_pred eeCC-CCHHHHHHHHHHHHHHHHh
Confidence 7643 3578899999988887654
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0057 Score=48.97 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC------CCCHHHHHHHH-hhcCceecCCC---CCCeee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD------VFHIYRLSSGL-NKRGWNTNSLQ---FPVGIH 71 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~------~~~i~~l~d~L-~~rGW~v~~~~---~P~~ih 71 (143)
++.+..+++.+.++++.+.|+++||+++......+.+.+..+ ..+..++.++| +++|..+.... .+..+|
T Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iR 389 (416)
T 1bw0_A 310 HLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTR 389 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEE
Confidence 355677788889999999999999998765433334444432 14677888888 58998876432 356788
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+++. ++++.+++.++-|+++++..+
T Consensus 390 is~~---~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 390 LTTT---RPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp EECC---SCHHHHHHHHHHHHHHHHHHB
T ss_pred EEec---CCHHHHHHHHHHHHHHHHHhh
Confidence 8884 356788999999988877643
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0096 Score=46.77 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~ 79 (143)
+.+..+++.+.++++.+.|+++ |+++. .+..+.+.|...+.+..++.+.|.++|..+.... .+..+|+++.
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---- 336 (360)
T 3hdo_A 263 LSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---- 336 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC----
Confidence 4567778888999999999998 88875 4555667777777788999999999999887654 3456888875
Q ss_pred ChhHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREE 94 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~a 94 (143)
+.+.+++|++-|++.
T Consensus 337 ~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 337 TREEMEQTLAALKEI 351 (360)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 357788888766654
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0047 Score=51.49 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecCCCCHHHHHHHHhhcCceec----CCC----CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSDVFHIYRLSSGLNKRGWNTN----SLQ----FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~~~~i~~l~d~L~~rGW~v~----~~~----~P~~i 70 (143)
|+.+..+++.++++++.++|+++ |++++... .+.+|.|+..+++-.++.+.|.+.|..++ ... .+..+
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~i 400 (483)
T 1rv3_A 322 EFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGL 400 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceE
Confidence 57888899999999999999998 99988642 45667776556778889999999998887 322 13578
Q ss_pred eEEEEeccc---ChhHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHT---QPGVADKFISDVREELAI 97 (143)
Q Consensus 71 hi~v~~~h~---~~~~~~~fl~Dl~~ai~~ 97 (143)
||++...++ +++.++++++-|++++..
T Consensus 401 Ris~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 401 RLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 988864222 267889999999888775
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0051 Score=48.80 Aligned_cols=94 Identities=10% Similarity=-0.028 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC--CCCHHHHHHHHhh-cCceecCCC-----CCCeeeEEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD--VFHIYRLSSGLNK-RGWNTNSLQ-----FPVGIHICI 74 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~~-rGW~v~~~~-----~P~~ihi~v 74 (143)
+.+..++..+.++++.+.|++++|+++......+.+.+... ..+..++.+.|.+ +|..+.... .+..+|+++
T Consensus 305 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~ 384 (407)
T 3nra_A 305 MEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF 384 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEe
Confidence 45667778888999999999999999875443334433333 4678899999965 698876432 245688887
Q ss_pred EecccChhHHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.. +++.++++++-|+++++.++
T Consensus 385 ~~---~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 385 SQ---DHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp CS---CHHHHHHHHHHHHHHHHHHB
T ss_pred CC---CHHHHHHHHHHHHHHHHHhh
Confidence 62 57899999999999988764
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0073 Score=48.98 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC------CCCHHHHHHHHh-hcCceecCC---CCCCeee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD------VFHIYRLSSGLN-KRGWNTNSL---QFPVGIH 71 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~------~~~i~~l~d~L~-~rGW~v~~~---~~P~~ih 71 (143)
++.+..+++.+.++++.++|+++||++++.......+.+..+ ..+-.++.++|. ++|-.+... ..+..+|
T Consensus 321 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iR 400 (427)
T 3dyd_A 321 FYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIR 400 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEE
Confidence 356677888889999999999999998765433333333322 256778888884 789877543 3466789
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
|++. ++++.++++++-|+++++.++
T Consensus 401 is~~---~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 401 VVIT---VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp EESC---SCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEC---CCHHHHHHHHHHHHHHHHHhh
Confidence 9875 457889999999999887764
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0074 Score=48.73 Aligned_cols=100 Identities=9% Similarity=0.027 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----eeEEEEecC----CCCHHHHHHHHhhcCceecCCCC------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----TSVIALGSD----VFHIYRLSSGLNKRGWNTNSLQF------ 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----l~vVaf~~~----~~~i~~l~d~L~~rGW~v~~~~~------ 66 (143)
++.+..++..++++++.+.|++++|+++..+|. ..++.|..+ +.+..++.+.|.++|..+...-.
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~ 337 (424)
T 2po3_A 258 AFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHEL 337 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccc
Confidence 345667777888899999999999999987542 246666544 46788999999999988865211
Q ss_pred -----------CCeee-----EEEE-ecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 67 -----------PVGIH-----ICIT-HMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 67 -----------P~~ih-----i~v~-~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
|..+| +.+. ....+.+.++.+++-|+++++..+..
T Consensus 338 ~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~~ 389 (424)
T 2po3_A 338 EPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGREL 389 (424)
T ss_dssp TTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHHH
Confidence 11223 4442 23446788999999888887765543
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0083 Score=49.19 Aligned_cols=92 Identities=3% Similarity=-0.100 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCe-eEeccC--ce-eEEEEecC--CCCHHHHHHHHhhcCceecC-CCCCCeeeEEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGL-FIFGTP--AT-SVIALGSD--VFHIYRLSSGLNKRGWNTNS-LQFPVGIHICI 74 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~-~vlg~p--~l-~vVaf~~~--~~~i~~l~d~L~~rGW~v~~-~~~P~~ihi~v 74 (143)
|..++.++..+.++++.++|+++ |+ ...++| .. .+++|..+ .++ ..+...|.++|-.+.. ..+..++|+++
T Consensus 285 G~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~ 362 (386)
T 3qm2_A 285 GVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADNTLD-KVFLEESFAAGLHALKGHRVVGGMRASI 362 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBCCTTTCSEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCcccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEc
Confidence 68888999999999999999999 55 444443 23 48999876 355 5677779999976644 34446799998
Q ss_pred EecccChhHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. .++.+.++.|++-|++..+
T Consensus 363 ~~-~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 363 YN-AMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp CT-TSCHHHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHH
Confidence 75 5567899999998887754
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0018 Score=50.27 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhc-CceecCC--CCCCeeeEEEEecc
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKR-GWNTNSL--QFPVGIHICITHMH 78 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~r-GW~v~~~--~~P~~ihi~v~~~h 78 (143)
++.+..+++.+.++++.++| +.+|+++.+++..+.+.+..+ .++.++|.++ |..+... ..+..+|+++.. .
T Consensus 265 ~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~-~ 338 (359)
T 1svv_A 265 LFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE----NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSW-A 338 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE----HHHHHHHTTTEECEEEEEETTTEEEEEEECCT-T
T ss_pred hHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC----HHHHHHHHHhcCEEEEecccCCCceEEEEccC-c
Confidence 56778889999999999999 567999887666666655433 4788999998 9887321 123457777543 3
Q ss_pred cChhHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAII 98 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+++.++++++-|+++++.+
T Consensus 339 ~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 339 TEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp CCHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 45788999999988876543
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.004 Score=49.31 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC--CCCHHHHHHHHhh-cCceecCCC---CCCeeeEEEEe
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD--VFHIYRLSSGLNK-RGWNTNSLQ---FPVGIHICITH 76 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~~-rGW~v~~~~---~P~~ihi~v~~ 76 (143)
..+..++..+.++++.+.|++++|+++.+......+.+... +.+..++.+.|.+ +|..+.... .+..+|+++.
T Consensus 289 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~- 367 (388)
T 1j32_A 289 VQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA- 367 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec-
Confidence 34566777888999999999999998775432222222222 4577889999976 799886432 2567898875
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+ +++.++++++-|+++++.+
T Consensus 368 -~-~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 368 -T-DLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp -S-CHHHHHHHHHHHHHHHHHH
T ss_pred -C-CHHHHHHHHHHHHHHHHHh
Confidence 3 5688999999999888764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0077 Score=47.80 Aligned_cols=88 Identities=7% Similarity=0.000 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEecccChhHH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~~~~~~ 84 (143)
+...+.++++.+.|+++ |+++........+.+..+..+..++.+.|.++|..+.... .+..+|+++. ++++.+
T Consensus 307 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~e~i 382 (398)
T 3ele_A 307 NAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC---VDREMI 382 (398)
T ss_dssp HHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECC---SCHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEec---CCHHHH
Confidence 45567788899999988 7887654333335556555578899999999999886543 3567888874 467899
Q ss_pred HHHHHHHHHHHHHHH
Q psy10208 85 DKFISDVREELAIIM 99 (143)
Q Consensus 85 ~~fl~Dl~~ai~~~~ 99 (143)
+++++-|+++++.++
T Consensus 383 ~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 383 KHSMPAFEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0098 Score=47.71 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecCCCCHHHHHHHHhhc------CceecCCC--------CC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSDVFHIYRLSSGLNKR------GWNTNSLQ--------FP 67 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~~~~i~~l~d~L~~r------GW~v~~~~--------~P 67 (143)
+.++.+.+.+.++++.+.|+++ |+++...|..+.+.| .....+..++.+.|.++ |..+.... .+
T Consensus 296 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~ 374 (409)
T 2gb3_A 296 FDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 374 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCC
Confidence 4566777888899999999998 888722344333333 44456788999999877 98875431 14
Q ss_pred CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 68 VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 68 ~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
..+|+++. ++++.++++++-|+++++.+++
T Consensus 375 ~~iRis~~---~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 375 KEIRIACV---LEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp SEEEEECC---SCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEeC---CCHHHHHHHHHHHHHHHHHhhh
Confidence 56788765 4578899999999999988764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.012 Score=46.12 Aligned_cols=87 Identities=20% Similarity=0.147 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC--CCeeeEEEEecccC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF--PVGIHICITHMHTQ 80 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~--P~~ihi~v~~~h~~ 80 (143)
..+..++..+.++++.+.|+++ |+++.. +..+.+.+..+..+..++.+.|.++|..+..... +..+|+++. +
T Consensus 276 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~----~ 349 (365)
T 3get_A 276 TEKTLENNFSQMELYKEFAKKH-NIKIID-SYTNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG----T 349 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEECC-CSSSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCEECC-CCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC----C
Confidence 4567778888899999999999 888753 4445566665444788999999999998865432 467888875 4
Q ss_pred hhHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREEL 95 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai 95 (143)
.+.+++|++.|++++
T Consensus 350 ~~~i~~l~~~l~~~l 364 (365)
T 3get_A 350 SYENEKFFTEFDKIL 364 (365)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 578999999998764
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.01 Score=46.80 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
+.+..++..+.++++.+.|++. |+++. .+..+.+.|... .+..++.+.|.++|..+.....+..+|+++. +++
T Consensus 280 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~~~~iRis~~----~~~ 352 (369)
T 3cq5_A 280 TLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDF-SDQHAAWQAFLDRGVLIRDVGIAGHLRTTIG----VPE 352 (369)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECC-SSHHHHHHHHHHTTEECBCCSCTTEEEEECC----CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECC-CCHHHHHHHHHHCCEEEEECCCCCeEEEEeC----CHH
Confidence 3455667778899999999985 88876 455567777654 5778899999999998876544567888875 357
Q ss_pred HHHHHHHHHHHHH
Q psy10208 83 VADKFISDVREEL 95 (143)
Q Consensus 83 ~~~~fl~Dl~~ai 95 (143)
.++.+++-|++++
T Consensus 353 ~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 353 ENDAFLDAAAEII 365 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0072 Score=47.98 Aligned_cols=94 Identities=5% Similarity=-0.109 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCeeEeccCceeEEE-EecC--CCCHHHHHHHHh-hcCceecCCC-----CCCeeeE
Q psy10208 3 YVNTTRSIIETVKYIEKELRS-MDGLFIFGTPATSVIA-LGSD--VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHI 72 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~l~vVa-f~~~--~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi 72 (143)
+.+..+...+.++++.+.|++ +||+++.. |..+.+. +... +.+..++.+.|. ++|..+.... .+..+|+
T Consensus 292 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi 370 (399)
T 1c7n_A 292 LDGCIKVIDKNQRIVKDFFEVNHPEIKAPL-IEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERI 370 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTSBCCC-CSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCeEec-CCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEE
Confidence 345566777889999999998 89988764 4433343 4543 357888999996 7898876532 2456888
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++... ++.++++++-|+++++.+++
T Consensus 371 s~~~~---~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 371 NLAAP---SSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp ECCSC---HHHHHHHHHHHHHHHHHHC-
T ss_pred EeccC---HHHHHHHHHHHHHHHHHHHh
Confidence 88643 57899999999999888764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=45.83 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~ 79 (143)
..+..+++.+.++++.+.|+++ |+++. .+..+.+.+.... +..++.+.|.++|..+. .. .+..+|+++.
T Consensus 262 ~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---- 333 (354)
T 3ly1_A 262 ITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLVV-PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---- 333 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECSS-CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCC-CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC----
Confidence 4566778888999999999988 78776 3444556666554 77899999999999887 33 3457888865
Q ss_pred ChhHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELA 96 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~ 96 (143)
+++.+++|++-|+++++
T Consensus 334 ~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 334 TPQEMQWVADTMREFRK 350 (354)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 35789999999988765
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.007 Score=47.64 Aligned_cols=93 Identities=8% Similarity=0.041 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCeeEeccCceeEEEEecC--CCCHHHHHHHHh-hcCceecCCC---C--CCeeeEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRS-MDGLFIFGTPATSVIALGSD--VFHIYRLSSGLN-KRGWNTNSLQ---F--PVGIHIC 73 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~-~rGW~v~~~~---~--P~~ihi~ 73 (143)
..++.+.+.+.++++.+.|++ +||+++........+.+... +.+..++.+.|. ++|-.+.... . +..+|++
T Consensus 288 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis 367 (391)
T 3dzz_A 288 LRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRIN 367 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE
Confidence 356667778889999999999 89999875433223323332 468889999995 8998886532 1 2567887
Q ss_pred EEecccChhHHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+. + +++.++++++-|+++++.+
T Consensus 368 ~~--~-~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 368 LA--C-PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp CC--S-CHHHHHHHHHHHHHHHHTC
T ss_pred ec--C-CHHHHHHHHHHHHHHHHHh
Confidence 76 3 5688999999999887654
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.026 Score=44.28 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCeeEeccCceeEEEEecC--CCCHHHHHHHHhhc-CceecCC---C--CCCeeeEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRS-MDGLFIFGTPATSVIALGSD--VFHIYRLSSGLNKR-GWNTNSL---Q--FPVGIHICI 74 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~~r-GW~v~~~---~--~P~~ihi~v 74 (143)
.++.+...+.++++.+.|++ +||+++.......++.+..+ +.+..++.+.|.++ |..+... . .+..+|+++
T Consensus 293 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~ 372 (391)
T 4dq6_A 293 ESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINL 372 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEE
Confidence 45667778889999999988 89999875433223224433 56888999999998 9888542 1 235688887
Q ss_pred EecccChhHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai 95 (143)
. ++++.++++++-|++++
T Consensus 373 ~---~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 373 A---CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp C---SCHHHHHHHHHHHHHHH
T ss_pred c---CCHHHHHHHHHHHHHHh
Confidence 6 35678888888887765
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0072 Score=48.38 Aligned_cols=92 Identities=9% Similarity=0.019 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEE-ecC---CCCHHHHHHHHh-hcCceecCCC-C----CCeeeE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL-GSD---VFHIYRLSSGLN-KRGWNTNSLQ-F----PVGIHI 72 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf-~~~---~~~i~~l~d~L~-~rGW~v~~~~-~----P~~ihi 72 (143)
+.++.+.+.+.++++.+.|+++||+++.. |..+.+.| ... +.+..++.+.|. ++|..+.... + +..+|+
T Consensus 302 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRi 380 (406)
T 1xi9_A 302 LKEYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRA 380 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeeec-CCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEE
Confidence 45566778888999999999999998764 44344443 333 457788999986 8998775432 1 457888
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
++. ++++.++++++-|+++++.+
T Consensus 381 s~~---~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 381 VFL---PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp ECC---SCHHHHHHHHHHHHHHHHHC
T ss_pred Eec---CCHHHHHHHHHHHHHHHHHH
Confidence 885 45688999999999887654
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0092 Score=47.43 Aligned_cols=91 Identities=11% Similarity=0.128 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCC------CeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFP------VGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~~~ 77 (143)
+..++..+.++++.+.|+++ |+++. .|..+++.+..+ +.+..++.+.|.++|..+.....+ ..+|+++..
T Consensus 295 ~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~- 371 (398)
T 3a2b_A 295 EHIEKLWKNTDYAKAQLLDH-GFDLG-ATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMA- 371 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBC-SCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCT-
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeC-
Confidence 55677788899999999998 88876 455677777664 345678999999999988764432 458888764
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+++.++++++-|+++++++
T Consensus 372 ~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 372 THTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 245789999999999987654
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0042 Score=49.79 Aligned_cols=95 Identities=19% Similarity=0.083 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc--eeE-EEEecCCCCHHHHHHHHhhcCceecCCC-CC-----------
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPA--TSV-IALGSDVFHIYRLSSGLNKRGWNTNSLQ-FP----------- 67 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~v-Vaf~~~~~~i~~l~d~L~~rGW~v~~~~-~P----------- 67 (143)
+.++.++..++++++.++|++++|+++...|. .++ +.|.....+..++.+.|.++|..+.... .|
T Consensus 273 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~ 352 (399)
T 2oga_A 273 LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEA 352 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccC
Confidence 34556677788999999999999998866553 222 1233223467789999999999886532 11
Q ss_pred --------------CeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 68 --------------VGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 68 --------------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+|+++.. ..+++.++.+++-|+++++.+
T Consensus 353 ~~~~~~p~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 353 PPEGSLPRAESFARQVLSLPIGP-HLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CCTTSCHHHHHHHHHEEEECCST-TCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCChhHHHHHhCEEEccCCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 247776653 446789999999999887654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0053 Score=47.99 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=66.3
Q ss_pred HHHH--HHHHHHHHHHHhhCCCeeEeccC--ceeEEEEecCCCCHHHHHHHHhhcCceecCC--------CCCCeee-EE
Q psy10208 7 TRSI--IETVKYIEKELRSMDGLFIFGTP--ATSVIALGSDVFHIYRLSSGLNKRGWNTNSL--------QFPVGIH-IC 73 (143)
Q Consensus 7 ~~~~--~~~a~~l~~~i~~i~g~~vlg~p--~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~--------~~P~~ih-i~ 73 (143)
.+++ .+.++++.++|+++ |+++.+++ ..+++.|... +..++.+.|.++|..+... ..+..+| ++
T Consensus 269 ~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~ 345 (371)
T 2e7j_A 269 KRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFK 345 (371)
T ss_dssp GGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC--CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEE
Confidence 4456 67889999999998 99988754 4677888654 6678999999999887541 1145789 88
Q ss_pred EEecccChhHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+.....+++.++.+++-|+++++.
T Consensus 346 ~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 346 LSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHHHHHHHh
Confidence 875314578999999999988764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.035 Score=49.25 Aligned_cols=96 Identities=15% Similarity=0.056 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCeeEeccCc---------------------------------------eeE----E
Q psy10208 3 YVNTTRSIIETVKYIEKELRS-MDGLFIFGTPA---------------------------------------TSV----I 38 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~---------------------------------------l~v----V 38 (143)
..+..+++.+.+++++++|++ ++||++++.+. ..+ |
T Consensus 417 g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv 496 (730)
T 1c4k_A 417 GRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKF 496 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEE
T ss_pred hHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEE
Confidence 355678899999999999999 89999876421 112 5
Q ss_pred EEecC------------CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 39 ALGSD------------VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 39 af~~~------------~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.|..+ +++-..+++.|+++|..+... .+..++++++..+ +++.++.|++-|++..+....
T Consensus 497 ~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~-~~~~ir~~~s~g~-t~e~i~~Ll~aL~~i~~~~~~ 568 (730)
T 1c4k_A 497 MLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS-DLNSILFLMTPAE-TPAKMNNLITQLLQLQRLIEE 568 (730)
T ss_dssp EEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-CSSEEEEECCTTC-CHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-CCCeEEEEeCCCC-CHHHHHHHHHHHHHHHHhccc
Confidence 56653 467899999999999888653 3466888887655 578999999999888776653
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.012 Score=46.62 Aligned_cols=92 Identities=11% Similarity=-0.053 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC--CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD--VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICI 74 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v 74 (143)
+.+..+++.+.++++.+.|+++ |+++........+.+... +.+..++.+.|. ++|..+.... .+..+|+++
T Consensus 287 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~ 365 (389)
T 1gd9_A 287 VEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY 365 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe
Confidence 4566777888899999999998 888765332223334443 467889999997 8998876432 145688887
Q ss_pred EecccChhHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. +++.++++++-|+++++..
T Consensus 366 ~~---~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 366 AT---AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp CS---CHHHHHHHHHHHHHHHHHT
T ss_pred cC---CHHHHHHHHHHHHHHHHhc
Confidence 63 5688999999998887653
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0085 Score=46.85 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEe-ccCceeEEEEecCC---CCHHHHHHHHhhcCceecCCCC--CC--eeeEEEEecc
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIF-GTPATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQF--PV--GIHICITHMH 78 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vl-g~p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~--P~--~ihi~v~~~h 78 (143)
.++..+.++++.++|++++|+++. ..+..+.+.+.... .+..++.+.|.++|..+..... |. .+|+++...+
T Consensus 258 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~ 337 (357)
T 3lws_A 258 MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAY 337 (357)
T ss_dssp HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTG
T ss_pred HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchh
Confidence 344577889999999999999985 45667777666543 2356788999999988776532 43 3566665444
Q ss_pred --cChhHHHHHHHHHHHHH
Q psy10208 79 --TQPGVADKFISDVREEL 95 (143)
Q Consensus 79 --~~~~~~~~fl~Dl~~ai 95 (143)
+.++.+++.++.|++++
T Consensus 338 ~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 338 GELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp GGSCHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHHHHhc
Confidence 24566666666666553
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=45.50 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-C----CCeeeEEEEec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F----PVGIHICITHM 77 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~----P~~ihi~v~~~ 77 (143)
..+..+...+.++++.+.|+++||+++.. +..+.+.|.... +..++.+.|.++|..+.... + +..+|+++.
T Consensus 266 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~-~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-- 341 (364)
T 1lc5_A 266 QQATWHWLREEGARFYQALCQLPLLTVYP-GRANYLLLRCER-EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-- 341 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEEEESC-TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEEECCC-cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC--
Confidence 34556667788899999999999998763 555566665432 23467888999999886543 2 456888864
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+.+.+++|++-|+++++.+
T Consensus 342 --~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 342 --SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp --CHHHHHHHHHHHHHHC---
T ss_pred --CHHHHHHHHHHHHHHhhcc
Confidence 2456778888887776554
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.027 Score=44.73 Aligned_cols=95 Identities=7% Similarity=0.091 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEE--EEecCCCCHHHHHHHHhhcCceecCCCC---------CCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVI--ALGSDVFHIYRLSSGLNKRGWNTNSLQF---------PVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vV--af~~~~~~i~~l~d~L~~rGW~v~~~~~---------P~~ 69 (143)
++.+..+++.+.++++.+.|++ .|+++... +..+.+ .+...+.+...+.+.|.++|..+..... +.+
T Consensus 279 ~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~ 357 (417)
T 3n0l_A 279 EWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSG 357 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCe
Confidence 4567788889999999999999 58998763 223333 3433456788999999999998874322 245
Q ss_pred eeEEEEecc---cChhHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMH---TQPGVADKFISDVREELAI 97 (143)
Q Consensus 70 ihi~v~~~h---~~~~~~~~fl~Dl~~ai~~ 97 (143)
+|+.....+ .+++.++++++-|+++++.
T Consensus 358 ~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 358 LRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp EEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred eEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 777654332 2457788888888887654
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.024 Score=44.81 Aligned_cols=91 Identities=9% Similarity=-0.001 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCeeEeccCceeEE-EEecCC--CCHHHHHHHHh-hcCceecCCC-----CCCeeeEE
Q psy10208 4 VNTTRSIIETVKYIEKELRS-MDGLFIFGTPATSVI-ALGSDV--FHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHIC 73 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~l~vV-af~~~~--~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~ 73 (143)
.+..+.+.+.++++.+.|++ +||+++.. |..+.+ .+.... ++..++.+.|. ++|..+.... .+..+|++
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris 367 (390)
T 1d2f_A 289 DALRIYLKDNLTYIADKMNAAFPELNWQI-PQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN 367 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCCCCC-CSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEec-CCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEE
Confidence 44556677788899999998 89988764 443333 344432 57888999998 6898885532 24568888
Q ss_pred EEecccChhHHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+.. .++.+++.++-|+++++++
T Consensus 368 ~~~---~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 368 AGC---PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CCS---CHHHHHHHHHHHHHHHHHH
T ss_pred ecC---CHHHHHHHHHHHHHHHHhh
Confidence 864 2578888888888887654
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.036 Score=44.61 Aligned_cols=88 Identities=8% Similarity=0.061 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCeeEeccCcee-EEEEecCCCCHHHHHHHHhh-cCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELR----SMDGLFIFGTPATS-VIALGSDVFHIYRLSSGLNK-RGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~----~i~g~~vlg~p~l~-vVaf~~~~~~i~~l~d~L~~-rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
..+...+.++++.+.|+ ++ |+++.. |..+ .+.+...+.+..++.+.|.+ +|..+... .+..+|+++.. .
T Consensus 336 ~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~-~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g-~~~~iRis~~~--~ 410 (430)
T 2x5f_A 336 NIQTLKERYEVTKEVVYADQYHS-HWQAYD-FNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIAL-NATDIRIAFSC--V 410 (430)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGTT-TEEECC-CCBSSEEEEEESSSCHHHHHHHHHHHHCEECEEC-SSSEEEEEGGG--S
T ss_pred HHHHHHHHHHHHHHHHHhhCCCC-CceeeC-CCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecC-CCCeEEEEEec--C
Confidence 55666777888999998 55 788764 4333 34444446678899999998 99988754 34568888763 4
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.++++++-|+++++.+
T Consensus 411 ~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 411 EKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp CGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 6788999999999998765
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.027 Score=44.79 Aligned_cols=99 Identities=10% Similarity=0.120 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEec--CCCCHHHHHHHHhhcCceecCCCC---------CCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGS--DVFHIYRLSSGLNKRGWNTNSLQF---------PVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~~~---------P~~ 69 (143)
++.+..+++.+.++++.++|++. |+++... +..+.+.+.. ...+...+.+.|.++|..+..... +..
T Consensus 287 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~ 365 (425)
T 3ecd_A 287 DFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSG 365 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccc
Confidence 45677888889999999999995 8998754 3455665554 256778899999999998873221 235
Q ss_pred eeEEEEeccc---ChhHHHHHHHHHHHHHHHHHcC
Q psy10208 70 IHICITHMHT---QPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 70 ihi~v~~~h~---~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+|++...... +++.++++++-|+++++..+++
T Consensus 366 iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 400 (425)
T 3ecd_A 366 IRLGTPAGTTRGFGAAEFREVGRLILEVFEALRTN 400 (425)
T ss_dssp EEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeccchhheeccCCHHHHHHHHHHHHHHHhccccc
Confidence 7776433221 3688999999999998887543
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=47.29 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHhhC-C---CeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCC-------CCCeeeE
Q psy10208 5 NTTRSIIETVKYIEKELRSM-D---GLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQ-------FPVGIHI 72 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i-~---g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~-------~P~~ihi 72 (143)
+..+...+.++++.+.|++. | |+++......+.+.+... ..+..++.+.|.++|..+.... .+..+|+
T Consensus 315 ~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRi 394 (425)
T 1vp4_A 315 PTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRL 394 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEE
Confidence 44555667788899999874 5 688765444456666654 4566678999999998876421 2456888
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++.. .+++.++++++-|+++++.+.+
T Consensus 395 s~~~--~~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 395 SFCL--PPDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp ECSS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 8764 3578999999999999887764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.02 Score=44.60 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhh-cCceecCCCC-----CCeeeEEEEecc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNK-RGWNTNSLQF-----PVGIHICITHMH 78 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~-rGW~v~~~~~-----P~~ihi~v~~~h 78 (143)
+..++..+.++++.+.|+++||+++.. +..+.+.+..+..+..++.+.|.+ +|-.+..... +..+|+++.
T Consensus 248 ~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--- 323 (350)
T 3fkd_A 248 LPIRKWQRNTVDFITALNRLDGVEVHP-SGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--- 323 (350)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTEEECC-CSSSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEECC-CCCcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---
Confidence 344555688999999999999999853 444455555443378899999998 9998865432 456888875
Q ss_pred cChhHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELA 96 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~ 96 (143)
+.+..++|++-|++..+
T Consensus 324 -~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 324 -RPAQNQLFIKALETFLE 340 (350)
T ss_dssp -CHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 23566677776665543
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.03 Score=45.20 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------------ceeEEEEecCCCCHHHHHHHHhhcCceecCCC-
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP-----------------ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------------~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~- 65 (143)
.+..++..++++++.+.|++.++++++..| ..++++|.. + +-.++...|.+.|..+ +..
T Consensus 280 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~~i~~-~~s~ 356 (412)
T 2cb1_A 280 ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAIRLLK-AANL 356 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHCSSEE-CSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhCCeee-eccc
Confidence 345556678899999999999999966322 245899988 5 7778888888888776 331
Q ss_pred ---------C-------------------CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 66 ---------F-------------------PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 66 ---------~-------------------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+ +..+|+++..- ..++.++++.++++
T Consensus 357 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~-----~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 357 GDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLE-----DPLDLLALFEEALE 410 (412)
T ss_dssp SCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSS-----CHHHHHHHHHHHHH
T ss_pred CCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccC-----CHHHHHHHHHHHHh
Confidence 1 34678887753 44566666666654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.022 Score=48.18 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEE--ecCCCCHHHHHHHHhhcCceecCC--------CCCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIAL--GSDVFHIYRLSSGLNKRGWNTNSL--------QFPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf--~~~~~~i~~l~d~L~~rGW~v~~~--------~~P~~i 70 (143)
++.+..+++.+++++|+++|++. |++++.. .+.+++.+ +..+++-..+.+.|++.|..++.. ..|.++
T Consensus 332 ~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~i 410 (490)
T 2a7v_A 332 MFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGL 410 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCce
Confidence 35677888999999999999997 9999743 23344444 344677788999999999999742 235678
Q ss_pred eEEEEecc---cChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMH---TQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h---~~~~~~~~fl~Dl~~ai~~~ 98 (143)
|+.....+ .+++.++.+++-|.+++...
T Consensus 411 Rig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 411 RLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp EEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 88553222 24567777777777666543
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.023 Score=45.11 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEec--CCCCHHHHHHHHhhcCceecCC---------CCCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGS--DVFHIYRLSSGLNKRGWNTNSL---------QFPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~---------~~P~~ 69 (143)
++.+..+++.+.++++.++|++. |++++.. +..+.+.+.. ...+...+.+.|.++|..+... ..+.+
T Consensus 286 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~ 364 (420)
T 3gbx_A 286 EFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSG 364 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcc
Confidence 45677888999999999999995 8998764 3455555543 3567788999999999988651 22456
Q ss_pred eeEEEEeccc---ChhHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHT---QPGVADKFISDVREELAI 97 (143)
Q Consensus 70 ihi~v~~~h~---~~~~~~~fl~Dl~~ai~~ 97 (143)
+|+++...+. +++.++.+++-|+++++.
T Consensus 365 iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 365 IRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp EEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred eEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 8888765432 356777887777777643
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.043 Score=44.25 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-C------CHHHHHHHHhhc-CceecCC-----CCCCee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-F------HIYRLSSGLNKR-GWNTNSL-----QFPVGI 70 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-~------~i~~l~d~L~~r-GW~v~~~-----~~P~~i 70 (143)
.+..+++.+.++++.+.|+++ |++++.......+.+.... . +..++.++|.++ |..+... ..+..+
T Consensus 328 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~i 406 (435)
T 3piu_A 328 AENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWF 406 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEE
Confidence 345667778888999999998 8887754433455554432 1 345788888766 9988652 235568
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
||++. +.+++.++++++-|+++++.++
T Consensus 407 Ri~~~--~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 407 RVCFA--NLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp EEECS--SSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEee--CCCHHHHHHHHHHHHHHHHHHh
Confidence 88874 3367999999999999988764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.017 Score=47.67 Aligned_cols=86 Identities=9% Similarity=-0.010 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
++.++..+.+++++++ |+++++...-..+.|..++.+-.++.+.|+++|+.+.. ..+..+|++++..++ ++.+
T Consensus 268 ~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~-~g~~~iRi~~~~~~t-~e~i 340 (446)
T 2x3l_A 268 LFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLEL-ADDYQALAILPLWHH-DDTY 340 (446)
T ss_dssp HHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESE-ECSSCEEEECCCCCT-TCCC
T ss_pred HHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEe-cCCCEEEEEeecCCC-HHHH
Confidence 3555555566666555 88888743222466666677888999999999999852 234578998875444 4556
Q ss_pred HHHHHHHHHHHHHH
Q psy10208 85 DKFISDVREELAII 98 (143)
Q Consensus 85 ~~fl~Dl~~ai~~~ 98 (143)
+|++.|+++.+.+
T Consensus 341 -~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 341 -LFDSLLRKIEDMI 353 (446)
T ss_dssp -CHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHhh
Confidence 9999998887654
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.009 Score=46.90 Aligned_cols=95 Identities=14% Similarity=0.009 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCC-eeEeccCce--eE-EEEecCCCCHHHHHHHHhhcCceecCCC------------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDG-LFIFGTPAT--SV-IALGSDVFHIYRLSSGLNKRGWNTNSLQ------------ 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g-~~vlg~p~l--~v-Vaf~~~~~~i~~l~d~L~~rGW~v~~~~------------ 65 (143)
++.+..++..+.++++.++|+++++ +++...+.. ++ +.|.....+..++.+.|+++|..+....
T Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~ 325 (374)
T 3uwc_A 246 QLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKS 325 (374)
T ss_dssp GHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhh
Confidence 4667778888999999999999988 887654421 11 1122122267789999999998776532
Q ss_pred -------CC-------CeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 66 -------FP-------VGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 66 -------~P-------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+| ..+|+.+.. ..+++.++.+++-|++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~lrl~~~~-~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 326 LGYQQGDFPMAEKHGEAVITLPAHP-YLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp GCCCTTSCHHHHHHHHHEEEECCCT-TSCHHHHHHHHHHHHHHHHT
T ss_pred cCCccCCCccHHHHHhCEEEccCCC-CCCHHHHHHHHHHHHHHHHh
Confidence 11 345666654 44578999999999888754
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.03 Score=47.14 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=69.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeE-EEEecC------CCCHHHHHHHHhhcC---ceec-----
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSV-IALGSD------VFHIYRLSSGLNKRG---WNTN----- 62 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~v-Vaf~~~------~~~i~~l~d~L~~rG---W~v~----- 62 (143)
+||.+..+++++.+++++++|++++ |+++++.+..++ .+++.+ .+|+..|.-.+..+| ..+.
T Consensus 314 ~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~ 393 (450)
T 3bc8_A 314 SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV 393 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccc
Confidence 4899999999999999999999999 999999775432 345432 467777877776655 3332
Q ss_pred ---------CCC----CCCeeeEEEE-ecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 63 ---------SLQ----FPVGIHICIT-HMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 63 ---------~~~----~P~~ihi~v~-~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+. +.+.-++++. .+-.+++.++.|++-|+++....++
T Consensus 394 ~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 394 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp EEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 221 1222233332 2234678999999999998777655
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.03 Score=44.48 Aligned_cols=87 Identities=9% Similarity=0.096 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCcee-EEEEecCCCCHHHHHHHHh-hcCceecCCC---CCCeeeEEEEec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATS-VIALGSDVFHIYRLSSGLN-KRGWNTNSLQ---FPVGIHICITHM 77 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~-vVaf~~~~~~i~~l~d~L~-~rGW~v~~~~---~P~~ihi~v~~~ 77 (143)
+.+..+++.+.++++.+.|+++ |+++.. |..+ .+.+... .+..++.++|. ++|..+.... .+..+|+++.
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~-- 369 (389)
T 1o4s_A 295 NSYMVQTFKERKNFVVERLKKM-GVKFVE-PEGAFYLFFKVR-GDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA-- 369 (389)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CSBSSEEEEECS-SCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCeeec-CCcceEEEEeCC-CCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--
Confidence 4567778888999999999998 888765 4333 3333443 57788999997 8998885432 2457888876
Q ss_pred ccChhHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREEL 95 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai 95 (143)
+ +++.++++++-|++++
T Consensus 370 ~-~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 370 T-SIERLTEALDRIEDFL 386 (389)
T ss_dssp S-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 2 5677888888887765
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.096 Score=42.89 Aligned_cols=91 Identities=10% Similarity=-0.018 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHhh-CC-CeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCC-------CCCeeeEEEEe
Q psy10208 7 TRSIIETVKYIEKELRS-MD-GLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQ-------FPVGIHICITH 76 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~-i~-g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~-------~P~~ihi~v~~ 76 (143)
.+...+.++++.+.|++ +| |+++........+.++.+ ..|..++.++|.++|..+.... .+..+|+++..
T Consensus 346 ~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~ 425 (448)
T 3aow_A 346 RKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY 425 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC
Confidence 34444678888899987 67 688764433445555654 5688899999999998775421 24568888763
Q ss_pred cccChhHHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.+++.++++++-|++++++..
T Consensus 426 --~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 426 --VDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp --SCTHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999987654
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.083 Score=41.52 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecC-CCC---CCeeeEEEEecc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNS-LQF---PVGIHICITHMH 78 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~-~~~---P~~ihi~v~~~h 78 (143)
+.+..+++.+.++++.++|++++++.....+..+.+.+... +..++.+.|.++|..+.. ... +..+|+++.
T Consensus 265 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~--- 339 (356)
T 1fg7_A 265 MRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG--- 339 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---
Confidence 35566777888999999999997754444445556666554 677899999999998876 322 346788774
Q ss_pred cChhHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVRE 93 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ 93 (143)
+.+.+++|++-|++
T Consensus 340 -~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 340 -TREESQRVIDALRA 353 (356)
T ss_dssp -CHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHh
Confidence 24667777766553
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.012 Score=45.86 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
+.+..+++.+.++++.+.|+++ |+++. .+..+.+.+..+..+..++.+.|.++|..+.. .+..+|+++.. .+
T Consensus 251 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~--~~~~iRis~~~----~~ 322 (335)
T 1uu1_A 251 FEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKEEKERLLEHLRTKNVAVRS--FREGVRITIGK----RE 322 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCTHHHHHHHHHHHHHTEEEEE--ETTEEEEECCC----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE--CCCeEEEEeCC----HH
Confidence 4567778888899999999988 77754 34445666665544567899999999998876 45678888742 24
Q ss_pred HHHHHHHHHHH
Q psy10208 83 VADKFISDVRE 93 (143)
Q Consensus 83 ~~~~fl~Dl~~ 93 (143)
.++++++-|++
T Consensus 323 ~i~~~~~~l~~ 333 (335)
T 1uu1_A 323 ENDMILRELEV 333 (335)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 46666665554
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.031 Score=43.53 Aligned_cols=88 Identities=8% Similarity=0.052 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEe-ccCceeEEEEecCC---CCHHHHHHHHhhcCceecCCCC---CC--eeeEEEEe
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIF-GTPATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQF---PV--GIHICITH 76 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vl-g~p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~---P~--~ihi~v~~ 76 (143)
..++..+.++++.++|++++|+++. ..+..+.+.+..+. .+..++.+.|.++|..+..... |. .+|+++..
T Consensus 259 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~ 338 (359)
T 3pj0_A 259 KMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGD 338 (359)
T ss_dssp GHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCT
T ss_pred HhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecC
Confidence 3456678889999999999999986 44556666555432 3456889999999998876543 22 35666654
Q ss_pred ccc--ChhHHHHHHHHHHH
Q psy10208 77 MHT--QPGVADKFISDVRE 93 (143)
Q Consensus 77 ~h~--~~~~~~~fl~Dl~~ 93 (143)
.+. +.+.+++.++.|++
T Consensus 339 ~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 339 AFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp TGGGSCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHh
Confidence 443 34555555555544
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.05 Score=43.99 Aligned_cols=90 Identities=10% Similarity=0.038 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhc-CceecCCC-----CCCeeeEEEEec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKR-GWNTNSLQ-----FPVGIHICITHM 77 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~r-GW~v~~~~-----~P~~ihi~v~~~ 77 (143)
.+..+.+.+.++++.++|+++ |+++.+....+.+.+...+.+..++.+.|.++ |..+.... .+..+||++..
T Consensus 344 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~- 421 (449)
T 3qgu_A 344 NAMIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG- 421 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-
Confidence 456677888899999999998 88887654455555555566788899888775 99876432 23568888542
Q ss_pred ccChhHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAI 97 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~ 97 (143)
+++.++++++-|+++++.
T Consensus 422 --~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 422 --SRENILEAVRRFKEAYGK 439 (449)
T ss_dssp --CHHHHHHHHHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHh
Confidence 568888999888887644
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.04 Score=42.68 Aligned_cols=88 Identities=11% Similarity=0.192 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEe-ccCceeEEEEecC--CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIF-GTPATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vl-g~p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
++..+.++++.+.|+++ |+++. .++..+.+.|..+ ..+..++.++|.++|-.+.... +..+|+++.. ..+++.+
T Consensus 256 ~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-~~~iRl~~~~-~~~~e~i 332 (347)
T 1jg8_A 256 KEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVS-DTEIRLVTHK-DVSRNDI 332 (347)
T ss_dssp HHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEE-TTEEEEECCT-TSCHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecCC-CCeEEEEeCC-CCCHHHH
Confidence 34456788999999988 88764 3456667777654 4678899999999998776432 4568887643 4467889
Q ss_pred HHHHHHHHHHHHHH
Q psy10208 85 DKFISDVREELAII 98 (143)
Q Consensus 85 ~~fl~Dl~~ai~~~ 98 (143)
+++++-|+++++.+
T Consensus 333 ~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 333 EEALNIFEKLFRKF 346 (347)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887643
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.022 Score=46.38 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccC------------------ceeEEEEecCC--CCHHHHHHHHhhcCceecCC-
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTP------------------ATSVIALGSDV--FHIYRLSSGLNKRGWNTNSL- 64 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p------------------~l~vVaf~~~~--~~i~~l~d~L~~rGW~v~~~- 64 (143)
..++..++++++.+.|+++|+++.+..| ..++|+|..++ .+...+.++|+..|..++.-
T Consensus 290 r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~ 369 (421)
T 2ctz_A 290 RAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGD 369 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCC
T ss_pred HHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCC
Confidence 4556668999999999999999988533 35689998764 23455666665555433221
Q ss_pred --------------C-----------CCCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 65 --------------Q-----------FPVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 65 --------------~-----------~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
. .+..+|++|.. +.++.+++||++++
T Consensus 370 ~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~-----e~~~~li~~l~~al 420 (421)
T 2ctz_A 370 TRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL-----EHVEDLKAELKEAL 420 (421)
T ss_dssp SSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS-----SCHHHHHHHHHHHT
T ss_pred CCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC-----CCHHHHHHHHHHHh
Confidence 0 12456777653 68999999999875
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.018 Score=45.75 Aligned_cols=91 Identities=11% Similarity=0.107 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc--C-----ceeEEEEecC---CCCHHHHHHHHhhcCceecCCCCC----
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT--P-----ATSVIALGSD---VFHIYRLSSGLNKRGWNTNSLQFP---- 67 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p-----~l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~~~~P---- 67 (143)
++.++.++..+.++++.++|+++ |+++... + ...++.+..+ +.+-.++.+.|.++|..+.....|
T Consensus 266 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~ 344 (391)
T 3dr4_A 266 RVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIM 344 (391)
T ss_dssp THHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccC
Confidence 56777888889999999999999 8888765 2 2123344332 577889999999999988755322
Q ss_pred -------------------CeeeEEEEecccChhHHHHHHHHHHHH
Q psy10208 68 -------------------VGIHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 68 -------------------~~ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
..+++.+.+ ..+.+.++.+++-|+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~lrl~~~~-~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 345 PPYAHLATDDLKIAEACGVDGLNLPTHA-GLTEADIDRVIAALDQV 389 (391)
T ss_dssp GGGGGGCCTTCHHHHHHHHHEEEECCCT-TCCHHHHHHHHHHHHTT
T ss_pred hhhhhcCcCCChHHHHHHhCeEEccCCC-CCCHHHHHHHHHHHHHH
Confidence 124555543 33567777777766654
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.031 Score=44.90 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCC-------CHHHHHHHHhhc-CceecCCC-C----CCee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVF-------HIYRLSSGLNKR-GWNTNSLQ-F----PVGI 70 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~-------~i~~l~d~L~~r-GW~v~~~~-~----P~~i 70 (143)
.+..+.+.+.++++.++|+++ |+++........+.+..... +..++.+.|.++ |-.+.... + +..+
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~i 401 (428)
T 1iay_A 323 RESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWF 401 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEE
Confidence 456677788899999999998 88765432444555554321 345788999876 98876532 1 3468
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
|+++. ..+++.++++++-|++++++
T Consensus 402 Ris~~--~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 402 RVCFA--NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EEECS--SSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEe--cCCHHHHHHHHHHHHHHHhc
Confidence 88885 34678999999999888653
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.026 Score=44.28 Aligned_cols=86 Identities=9% Similarity=-0.021 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeE-EEEecCCCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSV-IALGSDVFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~v-Vaf~~~~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~~ 76 (143)
.+..+.+.+.++++.+.|+++ |+++.. |..+. +.+..+. +..++.+.|. ++|..+.... .+..+|+++.
T Consensus 276 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~- 351 (370)
T 2z61_A 276 NSMIKEFDRRRRLVLKYVKDF-GWEVNN-PIGAYYVFPNIGE-DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA- 351 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCBCCC-CCBTTEECCBCSS-CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCeecC-CCcceEEEEecCC-CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-
Confidence 456677788899999999998 888764 43333 3334444 6788999997 7898876432 1456888876
Q ss_pred cccChhHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREEL 95 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai 95 (143)
+ +++.++++++-|++++
T Consensus 352 -~-~~~~i~~~~~~l~~~l 368 (370)
T 2z61_A 352 -N-SYENIKEGLERIKEFL 368 (370)
T ss_dssp -S-CHHHHHHHHHHHHHHH
T ss_pred -C-CHHHHHHHHHHHHHHH
Confidence 3 5678888888887765
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.043 Score=43.38 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCC--CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 5 NTTRSIIETVKYIEKELRSMD--GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~--g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
+..+++.+.++++.++|++++ .+... .+..+.+.|..+. +..++.+.|.++|..+.... +..+|++++. ..+++
T Consensus 303 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~l~~~l~~~gi~v~~~~-~~~iRi~~~~-~~~~~ 378 (392)
T 3ruy_A 303 KLTERSLQLGEKLVGQLKEIDNPMITEV-RGKGLFIGIELNE-PARPYCEQLKAAGLLCKETH-ENVIRIAPPL-VISEE 378 (392)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCTTEEEE-EEETTEEEEEESS-CSHHHHHHHHTTTEECCCBT-TTEEEECCCT-TCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcc-hHHHHHHHHHHCCcEEecCC-CCEEEEECCC-CCCHH
Confidence 345677788999999999882 23322 2334455665444 66789999999998887432 5678887654 34578
Q ss_pred HHHHHHHHHHHHH
Q psy10208 83 VADKFISDVREEL 95 (143)
Q Consensus 83 ~~~~fl~Dl~~ai 95 (143)
.++++++.|++++
T Consensus 379 ~i~~~~~~l~~~l 391 (392)
T 3ruy_A 379 DLEWAFQKIKAVL 391 (392)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998875
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.06 Score=43.97 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhC----CCeeEeccC-ceeEEEE--ecCCCCHHHHHHHHhhcCceec----CC-----C
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSM----DGLFIFGTP-ATSVIAL--GSDVFHIYRLSSGLNKRGWNTN----SL-----Q 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i----~g~~vlg~p-~l~vVaf--~~~~~~i~~l~d~L~~rGW~v~----~~-----~ 65 (143)
++.+..+++.++++++.+.|++. +|++++..+ ..+.+.+ +..+.+-..+.+.|+++|..+. .. .
T Consensus 299 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~ 378 (447)
T 3h7f_A 299 EFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPM 378 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCC
Confidence 46678888999999999999886 689987632 3333333 3345677788888988998877 22 1
Q ss_pred CCCeeeEEEEecc---cChhHHHHHHHHHHHHHHHH
Q psy10208 66 FPVGIHICITHMH---TQPGVADKFISDVREELAII 98 (143)
Q Consensus 66 ~P~~ihi~v~~~h---~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.|.++|+...... .+++.++++++-|+++++..
T Consensus 379 ~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 379 VTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp --CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred CCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 3556787653322 34567777777777776543
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.045 Score=48.58 Aligned_cols=95 Identities=6% Similarity=0.001 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCC---------eeEeccCce--------------------------------------
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDG---------LFIFGTPAT-------------------------------------- 35 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g---------~~vlg~p~l-------------------------------------- 35 (143)
..+..++.++.+++++++|++++| |++++++.+
T Consensus 443 g~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 522 (755)
T 2vyc_A 443 GLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFK 522 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCccccccccc
Confidence 466788899999999999999988 888775321
Q ss_pred -----------eEEEEecC-----------CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHH
Q psy10208 36 -----------SVIALGSD-----------VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 36 -----------~vVaf~~~-----------~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
..|.|..+ +++-+.+++.|+++|=.+.. ..+..++++++... +++.++.+++-|++
T Consensus 523 ~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~-~~~~~v~~~~~~g~-t~~~~~~l~~al~~ 600 (755)
T 2vyc_A 523 DIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTR-TTDFQIMFLFSMGV-TRGKWGTLVNTLCS 600 (755)
T ss_dssp TCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSE-ECSSEEEEECCTTC-CTTTTHHHHHHHHH
T ss_pred ccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEee-cCCCeEEEEECCCC-CHHHHHHHHHHHHH
Confidence 36677654 46679999999998854432 34667888887644 56888888888887
Q ss_pred HHHHHH
Q psy10208 94 ELAIIM 99 (143)
Q Consensus 94 ai~~~~ 99 (143)
..+...
T Consensus 601 ~~~~~~ 606 (755)
T 2vyc_A 601 FKRHYD 606 (755)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 766554
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.017 Score=45.62 Aligned_cols=88 Identities=8% Similarity=0.163 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCC------CeeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFP------VGIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P------~~ihi~v~~ 76 (143)
.+..+++.+.++++.++|+++ |+++.. +..+++.|..+ ..+..++.+.|.++|..+.....| ..+|+++..
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~ 366 (384)
T 1bs0_A 289 DARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTA 366 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCT
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcC
Confidence 467778888999999999998 788763 44445544432 345678999999999988764432 357777764
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
..+++.++++++-|+++
T Consensus 367 -~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 367 -AHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -TCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhh
Confidence 33467788888777653
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.052 Score=43.35 Aligned_cols=93 Identities=9% Similarity=0.038 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCcee-EEEEecC-CC---CHHHHHHHHh-hcCceecCCC-----CCCeee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATS-VIALGSD-VF---HIYRLSSGLN-KRGWNTNSLQ-----FPVGIH 71 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~-vVaf~~~-~~---~i~~l~d~L~-~rGW~v~~~~-----~P~~ih 71 (143)
+.+..+.+.+.++++.+.|+++ |+++.. |..+ .+.+..+ .+ +..++.+.|. ++|..+.... .+..+|
T Consensus 297 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iR 374 (412)
T 2x5d_A 297 VRDIARQYQQRRDVLVKGLREA-GWMVEN-PKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVR 374 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCCCC-CSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCEecC-CCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEE
Confidence 4566777788899999999988 787653 4433 4445543 45 6788999985 4798886532 145688
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+++.. +++.++++++.|+++++.+..
T Consensus 375 is~~~---~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 375 FALIE---NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp EECCS---CHHHHHHHHHHHHHHHHHTTC
T ss_pred EEecC---CHHHHHHHHHHHHHHHHhcCC
Confidence 88763 568899999999998876544
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.18 Score=40.17 Aligned_cols=84 Identities=10% Similarity=-0.041 Sum_probs=55.8
Q ss_pred HHHHHHHhhCC-CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecC-C--------CCCCeeeEEEEecccChhHH
Q psy10208 15 KYIEKELRSMD-GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNS-L--------QFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 15 ~~l~~~i~~i~-g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~-~--------~~P~~ihi~v~~~h~~~~~~ 84 (143)
+.|.+.+.+++ ++++........+.+..+..+...+.+.|.++|..+.. . ..+..+||++. ..+++.+
T Consensus 324 ~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~--~~~~~~i 401 (423)
T 3ez1_A 324 EVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPT--RPPVEEV 401 (423)
T ss_dssp HHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCS--SSCHHHH
T ss_pred HHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcC--CCCHHHH
Confidence 34445555565 47765433333444444433677899999999998865 2 12456788774 3367899
Q ss_pred HHHHHHHHHHHHHHHc
Q psy10208 85 DKFISDVREELAIIMQ 100 (143)
Q Consensus 85 ~~fl~Dl~~ai~~~~~ 100 (143)
+++++-|+++++.+..
T Consensus 402 ~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 402 RTAMQVVAACIRLATE 417 (423)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.067 Score=42.01 Aligned_cols=87 Identities=14% Similarity=0.003 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCC-----CCCeeeEEEEe
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQ-----FPVGIHICITH 76 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~ 76 (143)
+.+..+...+.++++.+.|+++ +++........+.+..+ ..+..++.+.|.++|..+.... .+..+|+++..
T Consensus 282 ~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~ 359 (376)
T 2dou_A 282 VRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR 359 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC
Confidence 3455667778889999999987 66654322233445543 5677889999999998876432 14568888753
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
+++.++++++-|+++
T Consensus 360 ---~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 360 ---PLEELLEAAKRIREA 374 (376)
T ss_dssp ---CHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHHH
Confidence 456777777777665
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.054 Score=46.30 Aligned_cols=102 Identities=16% Similarity=0.259 Sum_probs=67.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeE-EEEecCCC------CHHHHHHHHhhcC---ceecCC-C-
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSV-IALGSDVF------HIYRLSSGLNKRG---WNTNSL-Q- 65 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~v-Vaf~~~~~------~i~~l~d~L~~rG---W~v~~~-~- 65 (143)
+||+++.+++++++++++++|+++. |-+++..|.-|| +|++.+.+ ++-.+.-.|-.|| =.|-+. +
T Consensus 332 ~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~ 411 (501)
T 3hl2_A 332 NGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSM 411 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCc
Confidence 5999999999999999999999853 567887664333 56666432 4778888886653 333211 1
Q ss_pred -----------------CCC-eeeEEEEecccChhHHHHHHHHHHHHHHHHHcCCC
Q psy10208 66 -----------------FPV-GIHICITHMHTQPGVADKFISDVREELAIIMQNPG 103 (143)
Q Consensus 66 -----------------~P~-~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p~ 103 (143)
.|. -+-+... .-++++.+|.|++-|+++...+++...
T Consensus 412 ~~i~g~~f~~~g~h~~~~~~~yl~~a~a-iG~~~~~v~~~~~~l~~~~~~~~~~~~ 466 (501)
T 3hl2_A 412 QTVSGYTFRGFMSHTNNYPCAYLNAASA-IGMKMQDVDLFIKRLDRCLKAVRKERS 466 (501)
T ss_dssp EEETTEEESSTTTTSSCCSSCEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred eEECCeeecCcccCCCCCCchHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 011 1222222 233578999999999999999987654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.038 Score=44.71 Aligned_cols=91 Identities=5% Similarity=-0.045 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhhC----CCeeEeccCceeEEEEecCC---CCHHHHHHHHhhcCceecCCCCCCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSM----DGLFIFGTPATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i----~g~~vlg~p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~ 77 (143)
+..+++.+.++++.++|+++ +.+..+ .+..+.+.|.... .+..++.+.|.++|..+.... +..+|+++. .
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-~~~iRl~~~-~ 397 (420)
T 2pb2_A 321 EVLQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG-ADVMRFAPS-L 397 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS-TTEEEECCC-T
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC-CCEEEEECC-C
Confidence 45566777888888888775 333221 2333455554332 257889999999998876543 556787753 2
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.++++.++++++.|+++++++
T Consensus 398 ~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 398 VVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998765
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.016 Score=46.03 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeeEec--cCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 6 TTRSIIETVKYIEKELRSMD-GLFIFG--TPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~-g~~vlg--~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
..++..+.++++.++|++++ ++.++. .+..+++.|... ..+..++.+.|.++|..+.... +..+|+++.. ..++
T Consensus 303 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~-~~~iRis~~~-~~~~ 380 (397)
T 2ord_A 303 FLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAG-NNTIRFLPPL-TVEY 380 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-TTEEEECCCT-TCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCC-CCEEEEECCc-CCCH
Confidence 45666778888888887752 233221 233355666543 3567899999999998876542 5678887643 4467
Q ss_pred hHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELA 96 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~ 96 (143)
+.++++++.|+++++
T Consensus 381 e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 381 GEIDLAVETLKKVLQ 395 (397)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999998865
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.067 Score=42.66 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCC------CCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQF------PVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~------P~~ihi~v~~~ 77 (143)
++.+++.+.++++.++|+++ |+++.+ ..+++.+... ..+..++.+.|.++|..+..... +..+|+++..
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~- 383 (409)
T 3kki_A 308 NRRQHLDRMARKLRIGLSQL-GLTIRS--ESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNS- 383 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCCCCC--SSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCT-
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccCC--CCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccC-
Confidence 45667778899999999998 788764 4445555432 23456789999999988754322 2457887764
Q ss_pred ccChhHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAI 97 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~ 97 (143)
..+++.++++++-|+++++.
T Consensus 384 ~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 384 DVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 34578999999999988764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.23 Score=39.77 Aligned_cols=85 Identities=7% Similarity=-0.082 Sum_probs=56.2
Q ss_pred HHHHHHHHH----hhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecC-C--------CCCCeeeEEEEeccc
Q psy10208 13 TVKYIEKEL----RSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNS-L--------QFPVGIHICITHMHT 79 (143)
Q Consensus 13 ~a~~l~~~i----~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~-~--------~~P~~ihi~v~~~h~ 79 (143)
..+.+.+.| .+++++++........+.+..+..+..++.+.|.++|-.+.. . ..+..+|+++.. .
T Consensus 324 ~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~--~ 401 (427)
T 3ppl_A 324 KFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSL--P 401 (427)
T ss_dssp HHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS--S
T ss_pred HHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCC--C
Confidence 334444444 445566665433444455555544678899999999998865 1 134568888743 3
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+++.++++++-|++++..+.
T Consensus 402 ~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 402 PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999987764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.079 Score=42.29 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVAD 85 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~ 85 (143)
..+...+.++++.++|+++ |+++.. |+.+.+.|-.- .+..++.+.|.++|..+... +..+||++. ..+++.++
T Consensus 330 ~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g--~~~iRis~~--~~~~~~i~ 402 (418)
T 3rq1_A 330 YYQLIRDRADIFKQEAAQV-GLPMLP-YRGGFFITIPT-DSANAICEELKKEHIYVIAL--ANGIRIAAC--GIPKCQMT 402 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCCCC-CCSSSEEEEEC-TTHHHHHHHHHHTTEECEEC--SSEEEEEGG--GSCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCC-CCceEEEEcCC-CCHHHHHHHHHhCCEEEecC--CCCeEEEEe--cCCHHHHH
Confidence 3455667778888999988 787653 44444444321 25678899999999988754 467888864 34578999
Q ss_pred HHHHHHHHHHHHHH
Q psy10208 86 KFISDVREELAIIM 99 (143)
Q Consensus 86 ~fl~Dl~~ai~~~~ 99 (143)
++++-|+++++++.
T Consensus 403 ~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 403 GLAEKIYNAMKSLG 416 (418)
T ss_dssp THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.071 Score=40.96 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~ 79 (143)
+.+..+++.+.++++.+.|+++ |+++. .|..+.+.|.... -.++.+.|.++|..+.... .+..+|+++.
T Consensus 247 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---- 318 (337)
T 3p1t_A 247 REAHIAKTLAQRRRVADALRGL-GYRVA-SSEANFVLVENAA--GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---- 318 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBC-CCSSSEEEEECTT--THHHHHHHHHTTEECEEGGGGTCCSEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-cCEEC-CCCCeEEEEEcCC--HHHHHHHHHHCCeEEEECccCCCCCeEEEecC----
Confidence 4566777888899999999998 88764 4556677776543 3578889999999886543 3567888876
Q ss_pred ChhHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREEL 95 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai 95 (143)
+.+.++.|++-|++..
T Consensus 319 ~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 319 REEDNDRLLAALAEYS 334 (337)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 3567888888777653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.09 Score=41.03 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCeeEeccCceeEEEEecC--CCCHHHHHHHHhhc-CceecCCC-----CCCeeeEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRS-MDGLFIFGTPATSVIALGSD--VFHIYRLSSGLNKR-GWNTNSLQ-----FPVGIHIC 73 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~~r-GW~v~~~~-----~P~~ihi~ 73 (143)
+.+..+...+.++++.+.|++ +||+++.......++.+... ..+ .++.+.|.++ |..+.... .+..+|++
T Consensus 276 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris 354 (377)
T 3fdb_A 276 LNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIE-GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLN 354 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCC-SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCCC-HHHHHHHHHhCCEEecCChhccCCCCCEEEEE
Confidence 356677788889999999998 89999875433333334433 233 4566676654 98886432 24568888
Q ss_pred EEecccChhHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
+.. +++.++++++-|+++++
T Consensus 355 ~~~---~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 355 FAT---SREVLEEAIDRMAKAVS 374 (377)
T ss_dssp CCS---CHHHHHHHHHHHHHHHT
T ss_pred eCC---CHHHHHHHHHHHHHHHh
Confidence 762 56788888888888764
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.051 Score=44.42 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCC---CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
..+++.+.++++.++|+++ ++.++++ +..+++.|.... .+..++.+.|.++|..+... .+..+|+++.. ..+
T Consensus 345 ~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~-~~~~iRi~~~~-~~t 421 (439)
T 2oat_A 345 LAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT-HGDIIRFAPPL-VIK 421 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS-SSSEEEECCCT-TCC
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC-CCCEEEEECcc-CCC
Confidence 4566777889999999987 4544332 233455554332 46788999999999888753 24567776643 445
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELAI 97 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~ 97 (143)
++.++++++-|++++++
T Consensus 422 ~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 422 EDELRESIEIINKTILS 438 (439)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78999999999888653
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.094 Score=41.30 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC---CCHHHHHHHHh-hcCceecCCC-------CCCeee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV---FHIYRLSSGLN-KRGWNTNSLQ-------FPVGIH 71 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~---~~i~~l~d~L~-~rGW~v~~~~-------~P~~ih 71 (143)
+.+..+...+.++++.+.|+++ |+++........+.+..+. .+..++.+.|. ++|..+.... .+..+|
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iR 366 (386)
T 1u08_A 288 YLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIR 366 (386)
T ss_dssp HHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEE
Confidence 3456667778899999999998 8887654334466666554 57888999886 6898875421 345688
Q ss_pred EEEEecccChhHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDV 91 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl 91 (143)
+++. + +++.++++++-|
T Consensus 367 is~~--~-~~~~i~~~~~~l 383 (386)
T 1u08_A 367 LCFA--K-KESTLLAAAERL 383 (386)
T ss_dssp EECC--S-CHHHHHHHHHHH
T ss_pred EEEc--C-CHHHHHHHHHHH
Confidence 8875 3 445566655544
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=41.41 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC-------------CCHHHHHHHHh-hcCceecCCC-C-
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV-------------FHIYRLSSGLN-KRGWNTNSLQ-F- 66 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~-------------~~i~~l~d~L~-~rGW~v~~~~-~- 66 (143)
+.++.+...+.++++.+.|+++ |+++........+.+.... .+..++.++|. ++|..+.... +
T Consensus 314 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~ 392 (429)
T 1yiz_A 314 FNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFY 392 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhC
Confidence 3455666777888999999988 8887654334466666443 35678888886 7898876431 1
Q ss_pred --------CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 67 --------PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 67 --------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+..+|+++. + +++.++++++-|++++
T Consensus 393 ~~~~~~~~~~~iRis~~--~-~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 393 SEPNKHLGEDFVRYCFF--K-KDENLQKAAEILRKWK 426 (429)
T ss_dssp CGGGGGGTTTEEEEECC--S-CHHHHHHHHHHHHHHS
T ss_pred CCcccCCCCCeEEEEec--C-CHHHHHHHHHHHHHhc
Confidence 456788775 3 5678888888887764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.071 Score=42.46 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC-CCCHHHHHHHHhh-cCceecCCC-C----CCeeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD-VFHIYRLSSGLNK-RGWNTNSLQ-F----PVGIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~-~~~i~~l~d~L~~-rGW~v~~~~-~----P~~ihi~v~ 75 (143)
.+..+.+.+.++++.+.|+++ |+++.+.+..+.+.+. .+ ..+..++.++|.+ +|..+.... + +..+|+++
T Consensus 295 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~- 372 (400)
T 3asa_A 295 LEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSS- 372 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEe-
Confidence 345667778889999999998 8888764444556666 43 4455567887764 598876532 1 34588874
Q ss_pred ecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 76 HMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
..+++.++++++-|+++++....+
T Consensus 373 --~~~~e~i~~~l~~l~~~~~~~~~~ 396 (400)
T 3asa_A 373 --LGKREDILAACERLQMAPALQSHH 396 (400)
T ss_dssp --CSCHHHHHHHHHHHHC--------
T ss_pred --eCCHHHHHHHHHHHHHHHHhhhhc
Confidence 234688999999999888766554
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.15 Score=40.85 Aligned_cols=89 Identities=7% Similarity=-0.052 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhh-cCceecCCC-----CCCeeeEEEEec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNK-RGWNTNSLQ-----FPVGIHICITHM 77 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~-rGW~v~~~~-----~P~~ihi~v~~~ 77 (143)
.+..+.+.+.++++.+.|+++ |+++.+.+..+.+.+...+.+-.++.+.|.+ .|-.+.... .+..+|+++.
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~-- 408 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAF-- 408 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEec--
Confidence 456677788899999999998 8988865555666666666677788888765 598775432 1346888864
Q ss_pred ccChhHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELA 96 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~ 96 (143)
++++.+++.++-|++..+
T Consensus 409 -~~~e~l~~~l~rl~~~~~ 426 (432)
T 3ei9_A 409 -GHRENILEACRRFKQLYK 426 (432)
T ss_dssp -SCHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHhh
Confidence 245667777766665543
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.15 Score=39.81 Aligned_cols=91 Identities=8% Similarity=-0.026 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc--eeEEEEecCCCCHHHHHHHH-hhcCceecCCC---CCCeeeEEEEecc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA--TSVIALGSDVFHIYRLSSGL-NKRGWNTNSLQ---FPVGIHICITHMH 78 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~vVaf~~~~~~i~~l~d~L-~~rGW~v~~~~---~P~~ihi~v~~~h 78 (143)
+..+...+.++.+.+.|++.+++++..... ...+-+. .+.+..++..+| +++|-.+.... .+..+|+++...
T Consensus 276 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~~- 353 (375)
T 3op7_A 276 RNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIA-VDMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACE- 353 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEEC-CSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCSC-
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcC-CCCCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecCC-
Confidence 344455677888999999999998765432 2233332 356778888887 68898775432 256788887532
Q ss_pred cChhHHHHHHHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.+.++++++-|+++++.++
T Consensus 354 --~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 354 --QETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp --HHHHHHHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHHHHHHHHh
Confidence 3678888888888876543
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.1 Score=41.88 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeE--EEEecCCCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSV--IALGSDVFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~v--Vaf~~~~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v~ 75 (143)
.+..+.+.+..+++.+.|+++|+++++......+ +-|...+.+..++.+.|. +.|-.+.... .+..+|+++.
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~ 402 (421)
T 3l8a_A 323 EELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA 402 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec
Confidence 4566677788899999999888998875433222 223322356678899996 5698886521 2456888765
Q ss_pred ecccChhHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
++++.++++++-|+++++
T Consensus 403 ---~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 403 ---TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ---SCHHHHHHHHHHHHHHC-
T ss_pred ---CCHHHHHHHHHHHHHHHh
Confidence 356888888888887753
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.09 Score=41.54 Aligned_cols=94 Identities=6% Similarity=-0.001 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC-eeEeccC--ceeEEEEecCC---CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDG-LFIFGTP--ATSVIALGSDV---FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMH 78 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g-~~vlg~p--~l~vVaf~~~~---~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h 78 (143)
+..+++.+.++++.++|+++.. +.++.+. ..+.+.|.... .+..++.+.|.++|..+.... +..+|++... .
T Consensus 303 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-~~~iRi~~~~-~ 380 (406)
T 4adb_A 303 EMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG-GNVVRFAPAL-N 380 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESS-TTEEEECCCT-T
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC-CCeEEEECCC-C
Confidence 4566777788888888887521 2222221 22345555432 267899999999998886533 5678886654 4
Q ss_pred cChhHHHHHHHHHHHHHHHHHc
Q psy10208 79 TQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+++.++++++.|+++++.+++
T Consensus 381 ~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 381 VSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999988865
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.56 Score=37.04 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------------ceeEEEEecCCCCHHHHHHHHhhcCceecCC--C
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTP-----------------ATSVIALGSDVFHIYRLSSGLNKRGWNTNSL--Q 65 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------------~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~--~ 65 (143)
+..++..++++++.+.++++++++-..-| ..++++|..++. ..++...|.++|..+... .
T Consensus 250 ~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~g 328 (386)
T 1cs1_A 250 PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAESLG 328 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEcccCC
Confidence 44566778889999999888776543211 267888876542 567888999999877531 0
Q ss_pred ---------------------------CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 66 ---------------------------FPVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 66 ---------------------------~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.+..+|+++.. +..++.+++|.++++.+.
T Consensus 329 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~-----~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 329 GVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI-----EDGEDLIADLENGFRAAN 384 (386)
T ss_dssp SSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS-----SCHHHHHHHHHHHHHHHT
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc-----CCHHHHHHHHHHHHHHhh
Confidence 13457777653 467788888888887764
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.084 Score=43.55 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCce----------------e-EEEEecCC-CCHHHHHHHHhhcCceecCC-
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPAT----------------S-VIALGSDV-FHIYRLSSGLNKRGWNTNSL- 64 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l----------------~-vVaf~~~~-~~i~~l~d~L~~rGW~v~~~- 64 (143)
....++..++++++++.|++.|+++-+.-|.+ . +++|..++ .+...+.+.|+..+=.++..
T Consensus 299 ~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~ 378 (430)
T 3ri6_A 299 ALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHD 378 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCCCCC
Confidence 44567788999999999999999987766664 3 99998763 33445556555332111110
Q ss_pred -------------------------CCCCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 65 -------------------------QFPVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 65 -------------------------~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
..+.-+|++|. .+.++.+++||+.++
T Consensus 379 ~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG-----~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 379 NKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG-----IEEIEDLKEDILQAL 429 (430)
T ss_dssp SSCEEECTGGGC---------CGGGSCTTEEEEECC-----SSCHHHHHHHHHHHH
T ss_pred CCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHhh
Confidence 01233566554 378999999999886
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.25 Score=39.40 Aligned_cols=98 Identities=11% Similarity=0.146 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEe--cc----Ccee-EEEEecCC--CCHHHHHHHHh----hcCceecC-----
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIF--GT----PATS-VIALGSDV--FHIYRLSSGLN----KRGWNTNS----- 63 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vl--g~----p~l~-vVaf~~~~--~~i~~l~d~L~----~rGW~v~~----- 63 (143)
|+.++.++..+.++++.++|++++|+++. ++ ...+ +++|...+ .+-.++.+.+. +.|-.+..
T Consensus 303 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~ 382 (432)
T 3a9z_A 303 NCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDR 382 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCC
Confidence 46677888899999999999997676554 33 1222 66666543 34455555542 22322221
Q ss_pred -------CCC-----CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 64 -------LQF-----PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 64 -------~~~-----P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
... +..+|+++.. .++++.++++++.|+++++.+++
T Consensus 383 ~~~~l~~~g~~~~~~~~~iRis~~~-~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 383 PSPVLLSCGIPVDVARNAVRLSVGR-STTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp CCHHHHHTTCCHHHHTTEEEEECCT-TCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHhcCCCccccCceEEEEcCC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 011 2568888864 44578999999999999887764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.12 Score=41.45 Aligned_cols=89 Identities=7% Similarity=-0.003 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhhC---CCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 6 TTRSIIETVKYIEKELRSM---DGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i---~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
..+++.+.++++.++|+++ +++..+ .+..+++.|... ..+..++.+.|.++|..+... ...+|+++.. ..++
T Consensus 332 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~--~~~iRis~~~-~~t~ 407 (429)
T 1s0a_A 332 WQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPF--GKLIYLMPPY-IILP 407 (429)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESSCBCHHHHHHHHHHTTEECCCB--TTEEEECCCT-TCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEEEECCcccHHHHHHHHHHCCCEEecc--CCEEEEECCC-CCCH
Confidence 3456667788999999876 555422 222335555543 367788999999999888653 3567777543 3457
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELAII 98 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~ 98 (143)
+.++++++-|+++++.+
T Consensus 408 e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 408 QQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88999999998886543
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.074 Score=42.46 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC---CCHHHHHHHHh-hcCceecCC----C---------
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV---FHIYRLSSGLN-KRGWNTNSL----Q--------- 65 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~---~~i~~l~d~L~-~rGW~v~~~----~--------- 65 (143)
+.++.+.+.+.++++.+.|+++ |+++........+.|.... .+..++.++|. ++|..+... .
T Consensus 285 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~ 363 (411)
T 2o0r_A 285 VAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQ 363 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCcccccccc
Confidence 4566777788899999999988 8887653333355555543 56788999886 679887432 1
Q ss_pred ---CCCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 66 ---FPVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 66 ---~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+..+|+++. + +++.++++++-|+++++..
T Consensus 364 ~~~~~~~iRis~~--~-~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 364 ADVWNHLVRFTFC--K-RDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp -CCGGGCEEEECC--S-CHHHHHHHHHHHGGGGC--
T ss_pred ccCCCCeEEEEec--C-CHHHHHHHHHHHHHHHhcc
Confidence 1345888875 3 4577788887777765443
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.15 Score=40.77 Aligned_cols=89 Identities=9% Similarity=-0.020 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeE-EEEecC-CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEEE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSV-IALGSD-VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHICI 74 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~v-Vaf~~~-~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~v 74 (143)
+.++.+.+.+.++++.+.|+++ |+++.. |..+. +.+... .++..++.++|. ++|..+.... .+..+|+++
T Consensus 305 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~ 382 (404)
T 2o1b_A 305 LEEQSNVFKTRRDRFEAMLAKA-DLPFVH-AKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISL 382 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCEEC-CCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCeecC-CCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEE
Confidence 3455566777889999999998 888764 43333 444443 567788999976 6798886532 145688888
Q ss_pred EecccChhHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.. +++.++++++-|+++++
T Consensus 383 ~~---~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 383 AL---DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp CS---CTTHHHHHHHHHHGGGG
T ss_pred cC---CHHHHHHHHHHHHHHHH
Confidence 63 45678888887776653
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.1 Score=41.29 Aligned_cols=87 Identities=10% Similarity=0.018 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec--CCCCHHHHHHHHhhcCceecCCC---CCCeeeEEEEeccc
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS--DVFHIYRLSSGLNKRGWNTNSLQ---FPVGIHICITHMHT 79 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~--~~~~i~~l~d~L~~rGW~v~~~~---~P~~ihi~v~~~h~ 79 (143)
+..+...+.++++.+.|+++ |+++........+.... .+.+..++.+.|.++|..+.... .+..+|+++. +
T Consensus 291 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~---~ 366 (385)
T 1b5p_A 291 MAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA---T 366 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC---S
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec---C
Confidence 45566677788899999988 88876432211111122 24678899999999998875432 2567899876 3
Q ss_pred ChhHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREEL 95 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai 95 (143)
+++.+++.++-|++++
T Consensus 367 ~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 367 SEENLRKALERFARVL 382 (385)
T ss_dssp CHHHHHHHHHHGGGGC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4566677666665543
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.22 Score=39.57 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----ceeEEEEecC----------------------CCCHHHHHHHHh
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-----ATSVIALGSD----------------------VFHIYRLSSGLN 55 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----~l~vVaf~~~----------------------~~~i~~l~d~L~ 55 (143)
+.+..++..+.++++.++|+++ +++.+.+ ...++.|..+ +++..++.+.|.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK 322 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH
Confidence 4566788888999999999987 7776542 2224555543 235678999999
Q ss_pred hcCceecCCCCC-----C------------------eeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 56 KRGWNTNSLQFP-----V------------------GIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 56 ~rGW~v~~~~~P-----~------------------~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
++|..+.....| . ++.+.+ ....+.+.++.|++-|+++++
T Consensus 323 ~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 323 NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPS-GTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECC-CTTCCHHHHHHHHHHHHHHHC
T ss_pred HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccC-CCCCCHHHHHHHHHHHHHHHh
Confidence 999877655322 1 112222 223457888888888877643
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.42 Score=37.76 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhh-CC--CeeEeccCceeEEEEecC--CCCHHHHHHHHhhcCceecCCC-C-----------CCeee
Q psy10208 9 SIIETVKYIEKELRS-MD--GLFIFGTPATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQ-F-----------PVGIH 71 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~-i~--g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~-~-----------P~~ih 71 (143)
...+..+.+.+.|++ ++ |+++........+.+... +.+..++.+.|.++|-.+.... + +..+|
T Consensus 310 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iR 389 (417)
T 3g7q_A 310 FYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMR 389 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEE
T ss_pred HHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEE
Confidence 344566677777766 55 466654433334444443 4688899999999998776421 1 34578
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+++. + +++.++++++-|+++++.+.+
T Consensus 390 is~~--~-~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 390 MNYV--P-EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp EESC--S-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EEec--C-CHHHHHHHHHHHHHHHHHHHh
Confidence 8775 3 678999999999999887654
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.22 Score=41.36 Aligned_cols=88 Identities=9% Similarity=0.035 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCe-eEecc-----C-----------ceeEEEEecCCC--CHHHHHHHHhhcCceecC--
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGL-FIFGT-----P-----------ATSVIALGSDVF--HIYRLSSGLNKRGWNTNS-- 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~-~vlg~-----p-----------~l~vVaf~~~~~--~i~~l~d~L~~rGW~v~~-- 63 (143)
...++..++++++++.|++.|++ ++... | ..++++|..++- +...+.+.|+..|-.++.
T Consensus 312 ~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~ 391 (445)
T 1qgn_A 312 LRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGG 391 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCC
Confidence 34566778899999999999998 44432 1 357899987641 255666666522221111
Q ss_pred -----------------------CCC-CCeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 64 -----------------------LQF-PVGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 64 -----------------------~~~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
... +..+|++|. .+.++.|++||+++++.
T Consensus 392 ~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG-----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 392 CESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-----VEDFDDLKADILQALDS 444 (445)
T ss_dssp SSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-----SSCHHHHHHHHHHHHHH
T ss_pred CceeeecccccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence 111 346788776 26799999999999864
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.11 Score=40.52 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHH
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVA 84 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~ 84 (143)
+..+++.+.++++.++|++++...+ .+..+.+.|.... +..++.+.|.++|..+... .+..+|+++.. ..+++.+
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~~~~~~~-~~~~~~~~l~~~gi~~~~~-~~~~iRi~~~~-~~~~~~i 364 (375)
T 2eh6_A 290 KLLPHVREVGNYFKEKLKELGKGKV--KGRGLMLGLELER-ECKDYVLKALEKGLLINCT-AGKVLRFLPPL-IIQKEHI 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSEE--EEETTEEEEECSS-CCHHHHHHHHHTTEECEEE-TTTEEEECCCT-TCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc--eEEEEEEEEEEcC-cHHHHHHHHHHCCCEEecC-CCCEEEEECCC-CCCHHHH
Confidence 3556777889999999999854222 2333456665543 4568899999999887643 25678887653 4456788
Q ss_pred HHHHHHHHHH
Q psy10208 85 DKFISDVREE 94 (143)
Q Consensus 85 ~~fl~Dl~~a 94 (143)
+++++-|+++
T Consensus 365 ~~~~~~l~~~ 374 (375)
T 2eh6_A 365 DRAISVLREI 374 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887765
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.48 Score=37.95 Aligned_cols=87 Identities=8% Similarity=-0.044 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhh----CCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecC-CC-C-------CCeeeEEEEecc
Q psy10208 12 ETVKYIEKELRS----MDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNS-LQ-F-------PVGIHICITHMH 78 (143)
Q Consensus 12 ~~a~~l~~~i~~----i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~-~~-~-------P~~ihi~v~~~h 78 (143)
+..+++.+.|++ ++++++........+.+.....+...+.+.|.++|..+.. .. + +..+|+++..
T Consensus 321 ~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-- 398 (422)
T 3d6k_A 321 PKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-- 398 (422)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS--
T ss_pred HHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC--
Confidence 344555555543 5456765432333344444333667888999999998866 22 2 3457777753
Q ss_pred cChhHHHHHHHHHHHHHHHHHc
Q psy10208 79 TQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++++.++++++-|+++++.+..
T Consensus 399 ~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 399 PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999877643
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.16 Score=42.23 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec---C----------CC--CHHHHHHHHhhcCceecCCCC----
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS---D----------VF--HIYRLSSGLNKRGWNTNSLQF---- 66 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~---~----------~~--~i~~l~d~L~~rGW~v~~~~~---- 66 (143)
+.+++.+.++++.++|+++||+++. .|+...+.|-. + +. +...+.+.|+++|-.+.....
T Consensus 385 ~~~~l~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~ 463 (500)
T 3tcm_A 385 ILASLARRAKALEHAFNKLEGITCN-EAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV 463 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTEECC-CCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEe-cCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC
Confidence 3455677788999999999999875 56655566521 1 01 112244677888987764321
Q ss_pred --CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 67 --PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 67 --P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+..+|+++. .+++.++++++-|+++++.+.+
T Consensus 464 ~g~~~iRis~~---~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 464 PGTWHFRCTIL---PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp TTCCBEEEESC---SCTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 224788887 3457899999999998877654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=94.02 E-value=0.12 Score=42.14 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhC-CCeeEecc--CceeEEEEecCC--CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 6 TTRSIIETVKYIEKELRSM-DGLFIFGT--PATSVIALGSDV--FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i-~g~~vlg~--p~l~vVaf~~~~--~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
..+++.+.++++.++|+++ .++.++++ +..+++.|.... .+..++.+.|.++|-.+... .+..+|+++.. ..+
T Consensus 334 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~-~~~~iRi~~~~-~~t 411 (433)
T 1z7d_A 334 LCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV-HDKTIRLTPPL-CIT 411 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE-TTTEEEECCCT-TCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC-CCCEEEEECCc-CCC
Confidence 3556677788888888765 23322221 233445554432 46778999999999877643 24567776643 346
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELAIIM 99 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~ 99 (143)
++.++++++-|+++++.+.
T Consensus 412 ~e~i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 412 KEQLDECTEIIVKTVKFFD 430 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999987764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.49 Score=37.88 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhh-CC--CeeEeccCceeEEEEecC--CCCHHHHHHHHhhcCceecCCCC-------------CCee
Q psy10208 9 SIIETVKYIEKELRS-MD--GLFIFGTPATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQF-------------PVGI 70 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~-i~--g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~~-------------P~~i 70 (143)
...+..+.+.+.|++ ++ ++++........+.+... ..+-.++.+.|.++|-.+..... +..+
T Consensus 336 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~i 415 (444)
T 3if2_A 336 FYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECI 415 (444)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEE
T ss_pred HHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeE
Confidence 334455566666654 55 456554333333333333 57888999999999988764321 1357
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
||++.. +++.++++++-|++++..+.+
T Consensus 416 Ris~~~---~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 416 RMSIAA---DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp EEESSS---CHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeC---CHHHHHHHHHHHHHHHHHHHc
Confidence 777763 678999999999999988765
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.57 Score=36.88 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-ceeE--EEEecC---CCCHHHHHHHHhhcCceecC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP-ATSV--IALGSD---VFHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-~l~v--Vaf~~~---~~~i~~l~d~L~~rGW~v~~ 63 (143)
+.++.++..++++++.++|++++|+++.+.+ ..+. +.+..+ +.+-.++.+.|.++|..+..
T Consensus 268 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~ 334 (390)
T 3b8x_A 268 LPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRP 334 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeee
Confidence 4567778888999999999999999987643 2222 333333 46778999999999987765
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.33 Score=38.92 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhhcCceecCC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNKRGWNTNSL 64 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~rGW~v~~~ 64 (143)
....++..++++++++.|++.|++.-+..|. -.+++|..++ .+...+.+.|+..|-.++.-
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G 342 (392)
T 3qhx_A 263 VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLG 342 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCC
Confidence 4556778889999999999999887664443 3478887654 45567777777665333321
Q ss_pred C-----------------------CCCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 65 Q-----------------------FPVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 65 ~-----------------------~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
. .|..+|++|.. +..+++++||.+++
T Consensus 343 ~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~-----e~~~~~i~~l~~al 391 (392)
T 3qhx_A 343 SVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI-----EDVADLLDDLKQAL 391 (392)
T ss_dssp CSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS-----SCHHHHHHHHHHHH
T ss_pred CCCceeeCcccccccccCHHHcCCCCCeEEEEecc-----CCHHHHHHHHHHHh
Confidence 1 13457777764 57888899998875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.081 Score=42.06 Aligned_cols=86 Identities=8% Similarity=0.045 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+.+..+.+.+.++++.++|++++ ++++.. |....+.|. +++...+...|+++|..+.. ++|+++. +.
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~gv~v~~-----~~Ris~~--~~ 392 (412)
T 1ajs_A 323 VKTMADRILSMRSELRARLEALKTPGTWNHIT-DQIGMFSFT--GLNPKQVEYLINQKHIYLLP-----SGRINMC--GL 392 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH-HCCSSEEEC--CCCHHHHHHHHHTTCEECCT-----TSEEEGG--GC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEc-CCCceEEEe--CCCHHHHHHHHHhCCEEecC-----CcEEEee--eC
Confidence 34566777888899999999985 476543 444445553 33444556667789998863 4788876 33
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.++++++-|+++++++
T Consensus 393 ~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 393 TTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 5688999999999987653
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.23 Score=41.13 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEec--CC-----C-----CHHHHHHHHhhcCceecCCCCCCeee
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGS--DV-----F-----HIYRLSSGLNKRGWNTNSLQFPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~--~~-----~-----~i~~l~d~L~~rGW~v~~~~~P~~ih 71 (143)
..+++.+..+++.++|+++..+..+++ +.-..++|.. +. + ....+.+.|.++|-.+.... ..+|
T Consensus 351 ~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iR 428 (476)
T 3i5t_A 351 IVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG--DLCV 428 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEET--TEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecC--CEEE
Confidence 345666777888888887643322222 2222334332 21 1 14578889999997765422 4466
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
|+.. ..++++.++++++-|+++++.+.+.
T Consensus 429 i~p~-l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 429 ISPP-LIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp ECCC-TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 2446799999999999999888764
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.39 Score=40.88 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
-|++-+++++++|+.|++.|.+. ||+++.. -++-+|-.+..+++=-+..+.|.+-|-.++.-. .|.+|
T Consensus 332 ~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGi 410 (490)
T 3ou5_A 332 MFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGL 410 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCee
Confidence 37889999999999999999997 9999953 456566666667777888899999998776422 25689
Q ss_pred eEEEEecccChh
Q psy10208 71 HICITHMHTQPG 82 (143)
Q Consensus 71 hi~v~~~h~~~~ 82 (143)
||-. +..|+++
T Consensus 411 RiGT-pa~TtRG 421 (490)
T 3ou5_A 411 RLGA-PALTSRQ 421 (490)
T ss_dssp EEES-HHHHHTT
T ss_pred EECC-HHHHhCC
Confidence 9865 3444433
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.39 Score=37.39 Aligned_cols=82 Identities=9% Similarity=-0.019 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-eeEEEEecCCCCHHHHHHHHhh-cCceecCC-------CCCCeeeEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-TSVIALGSDVFHIYRLSSGLNK-RGWNTNSL-------QFPVGIHICI 74 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-l~vVaf~~~~~~i~~l~d~L~~-rGW~v~~~-------~~P~~ihi~v 74 (143)
.+..+.+.+..+++.+.|+ ++. .|. ...+.+... +..++.+.|.+ +|..+... ..+..+|+++
T Consensus 283 ~~~~~~~~~~~~~l~~~l~---~~~---~~~~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~ 354 (376)
T 3ezs_A 283 EFFRNIYANNLKLARKIFK---NTL---IYPYSFYVYLPVQ--NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLAL 354 (376)
T ss_dssp HHHHHHHHHHHHHHHHHST---TCC---CCSBSSEEEEECS--CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhc---CCC---CCCcceEEEEECC--CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEE
Confidence 4555666777777888777 554 333 333444444 67889999987 89888542 2355688887
Q ss_pred EecccChhHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
. + +++.++++++-|+++++
T Consensus 355 ~--~-~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 355 V--Y-DTPLLEKPLEIIETYRE 373 (376)
T ss_dssp C--S-CHHHHHHHHHHHHHHHC
T ss_pred c--C-CHHHHHHHHHHHHHHHH
Confidence 5 3 57899999999988764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.18 Score=41.57 Aligned_cols=90 Identities=9% Similarity=-0.003 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhC---CCeeEeccCceeEEEEec-CCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChh
Q psy10208 7 TRSIIETVKYIEKELRSM---DGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i---~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
.+++.+..+++.++|+++ +++..+ .+...++.|.. +..+..++.++|.++|-.+... ...+|++... ..+++
T Consensus 362 ~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~--~~~lRi~p~~-~~t~e 437 (457)
T 3tfu_A 362 RTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECDRPVDLAVATPAALDRGVWLRPF--RNLVYAMPPY-ICTPA 437 (457)
T ss_dssp HHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEESSCCCHHHHHHHHHHTTEECCCB--TTEEEECCCT-TCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEECCcccHHHHHHHHHHCCeEEEec--CCEEEEECCC-CCCHH
Confidence 455666778888888775 333322 12233444443 2456789999999999766532 2445654322 33678
Q ss_pred HHHHHHHHHHHHHHHHHc
Q psy10208 83 VADKFISDVREELAIIMQ 100 (143)
Q Consensus 83 ~~~~fl~Dl~~ai~~~~~ 100 (143)
.++++++-|+++++++..
T Consensus 438 ei~~~l~~L~~~l~~~~~ 455 (457)
T 3tfu_A 438 EITQITSAMVEVARLVGS 455 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999887654
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.36 Score=37.95 Aligned_cols=93 Identities=5% Similarity=-0.009 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeE-EEEecC--CCCHHHHHHHHhhc-CceecCCC------CCCeeeE
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSV-IALGSD--VFHIYRLSSGLNKR-GWNTNSLQ------FPVGIHI 72 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~v-Vaf~~~--~~~i~~l~d~L~~r-GW~v~~~~------~P~~ihi 72 (143)
..+..+.+.+.++++.+.|+++ |+..+..|..+. +.+... ..+-.++.+.|.++ |-.+.... .+..+|+
T Consensus 281 ~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRi 359 (391)
T 3h14_A 281 LQANLDVYKANRKLMLERLPKA-GFTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRF 359 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEE
Confidence 4566677788889999999988 555444454322 222332 56788999997765 98885421 1346888
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
++.. +++.++++++-|+++++...
T Consensus 360 s~~~---~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 360 SYAR---ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp ECCS---CHHHHHHHHHHHHHHHHHC-
T ss_pred EecC---CHHHHHHHHHHHHHHHHHhc
Confidence 7764 45888999998888876544
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.25 Score=39.23 Aligned_cols=92 Identities=7% Similarity=-0.063 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHhh----CCCeeEeccCceeEEEEecC---------CCCHHHHHHHHhhcCceecCCC-CCCeee
Q psy10208 6 TTRSIIETVKYIEKELRS----MDGLFIFGTPATSVIALGSD---------VFHIYRLSSGLNKRGWNTNSLQ-FPVGIH 71 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~----i~g~~vlg~p~l~vVaf~~~---------~~~i~~l~d~L~~rGW~v~~~~-~P~~ih 71 (143)
..+++.+.++++.+++++ ++.+..+ .|..+.+.|... ..+..++.+.|.++|..+.... .+..+|
T Consensus 320 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iR 398 (426)
T 1sff_A 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLR 398 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEE
Confidence 345666778888888876 3333221 233445555432 1345678999999998876543 356788
Q ss_pred EEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+++.. ..+++.++++++-|+++++.++
T Consensus 399 i~~~~-~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 399 ILVPL-TIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp ECCCT-TCCHHHHHHHHHHHHHHHHHHC
T ss_pred EECCc-cCCHHHHHHHHHHHHHHHHHHh
Confidence 87753 4457899999999999988764
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.56 Score=37.84 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-------cC--CCCHHHHHHHH-hhcCceecC-CC-----------
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-------SD--VFHIYRLSSGL-NKRGWNTNS-LQ----------- 65 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-------~~--~~~i~~l~d~L-~~rGW~v~~-~~----------- 65 (143)
++..+.++++.++|++ +|++++.+.....+.+. .. .++-.++.++| .++|-.+.. ..
T Consensus 326 ~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~ 404 (467)
T 1ax4_A 326 HYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGE 404 (467)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred HHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccccccccc
Confidence 3445678889999988 58887755444455555 21 24567899999 889987754 10
Q ss_pred -CC---CeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 66 -FP---VGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 66 -~P---~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
.| ..+|+++....++.+.++++++-|+++++.++..+
T Consensus 405 ~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~~~~ 445 (467)
T 1ax4_A 405 QKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLK 445 (467)
T ss_dssp BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTCC
T ss_pred ccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhhcCC
Confidence 01 35777765433668899999999999988876543
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.63 Score=37.28 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhh-CCCeeEeccCc-eeEEEEecC-CCCHHH-HHHHHhhcCceecCCC--------CCCeeeEEEE
Q psy10208 8 RSIIETVKYIEKELRS-MDGLFIFGTPA-TSVIALGSD-VFHIYR-LSSGLNKRGWNTNSLQ--------FPVGIHICIT 75 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~-i~g~~vlg~p~-l~vVaf~~~-~~~i~~-l~d~L~~rGW~v~~~~--------~P~~ihi~v~ 75 (143)
+...+.++++.+.|++ ++|+..+..|. ...+.+... ..+..+ +.+.|.++|..+.... ....+|+++.
T Consensus 324 ~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~ 403 (425)
T 2r2n_A 324 DFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFS 403 (425)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeC
Confidence 4445667788888887 67874333443 334444443 244445 5888999998876432 1245788876
Q ss_pred ecccChhHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+++.++++++-|+++++++
T Consensus 404 --~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 404 --SASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp --SCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHh
Confidence 246789999999999887653
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=92.61 E-value=0.11 Score=41.40 Aligned_cols=85 Identities=7% Similarity=0.001 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
+.+..++..+.++++.+.|++++ ++++.. |..+.+.|. +++-..+...++++|..+.. .+||++. +.
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~-----~~Ris~~--~~ 392 (412)
T 1yaa_A 323 MVTMSSRITKMRHALRDHLVKLGTPGNWDHIV-NQCGMFSFT--GLTPQMVKRLEETHAVYLVA-----SGRASIA--GL 392 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHH-HCCSSEEEC--CCCHHHHHHHHHHHCEECCT-----TSEEEGG--GC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCeeeec-cCceEEEee--CCCHHHHHHHHHhCCEEecc-----CcEEEEc--cC
Confidence 34556667778889999999875 477653 444455563 34455676667789998874 5788875 33
Q ss_pred ChhHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAI 97 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~ 97 (143)
+++.++++++-|+++++.
T Consensus 393 ~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 393 NQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp CTTTHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHh
Confidence 568899999999888764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.14 Score=40.20 Aligned_cols=89 Identities=12% Similarity=-0.039 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----eeEEEEecCCCCHHHHHHHHhhcCceecCCC-C---------
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----TSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-F--------- 66 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-~--------- 66 (143)
++.++.++..++++++.+.|++++ +++...+. ..++.+.. .+-.++.+.|.++|..+.... .
T Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~ 321 (373)
T 3frk_A 245 YLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS--EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYK 321 (373)
T ss_dssp THHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE--SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe--CCHHHHHHHHHHCCCCcccCcCCccccChHHH
Confidence 456677888889999999999987 77654332 11222222 257789999999998776432 1
Q ss_pred ---------C-------CeeeEEEEecccChhHHHHHHHHHHHH
Q psy10208 67 ---------P-------VGIHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 67 ---------P-------~~ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
| ..+|+.+.+.+ +.+.++.+++-|++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~lrl~~~~~~-t~~di~~~~~~l~~~ 364 (373)
T 3frk_A 322 DLGFKTGNFPIAEKIANEILSIPIWYGM-KNEEIEYVIDKINAW 364 (373)
T ss_dssp GGCCCTTSSHHHHHHHHHEEEECCCTTC-CHHHHHHHHHHHHTC
T ss_pred hcCCCCCCCHHHHHHHhCEEEccCCCCC-CHHHHHHHHHHHHHH
Confidence 1 34677776544 456666666655544
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.68 Score=37.64 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC------CCHHHHHHHHhhcCce
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV------FHIYRLSSGLNKRGWN 60 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~------~~i~~l~d~L~~rGW~ 60 (143)
....++..++++++++.|++.|++.-+.-|. -.+++|..++ .+...+.+.|+..|-.
T Consensus 278 ~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 357 (414)
T 3ndn_A 278 AIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDIS 357 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEc
Confidence 4556778899999999999999987665554 3478887753 2356677777755422
Q ss_pred ecCC--------------------------CCCCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 61 TNSL--------------------------QFPVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 61 v~~~--------------------------~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
++.- ..+..+|++|.. +..+.+++||+.++
T Consensus 358 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~-----e~~~dli~dl~~al 413 (414)
T 3ndn_A 358 NNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL-----EDTDDLIADIDRAL 413 (414)
T ss_dssp SCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS-----SCHHHHHHHHHHHH
T ss_pred CCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHhh
Confidence 2211 123456777753 67899999999886
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.17 Score=40.88 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCC----C--CHHHHHHHHhhcCceecCCCCCCeeeEEEEec
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDV----F--HIYRLSSGLNKRGWNTNSLQFPVGIHICITHM 77 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~----~--~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~ 77 (143)
..+++.+..+++.++|++++++.++++ +..+++.|.... . +-+++.+.|.++|-.+.... ..+|++...
T Consensus 350 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRis~~~- 426 (449)
T 3a8u_X 350 LVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG--DTLQFGPTF- 426 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET--TEEEECCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC--CEEEEECCC-
Confidence 455667778889999988654443332 233455555432 1 23478999999998776542 556766532
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
..+++.++++++-|+++++.+
T Consensus 427 ~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 427 NSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 446789999999999987653
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.5 Score=37.43 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC----CC----------HHHHHHHH-hhcCceecCCC--
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV----FH----------IYRLSSGL-NKRGWNTNSLQ-- 65 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~----~~----------i~~l~d~L-~~rGW~v~~~~-- 65 (143)
+.+..+.+.+.++++.+.|+++ |+++........+.+.... .+ ..++...| +++|-.+....
T Consensus 306 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f 384 (422)
T 3fvs_A 306 FVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIF 384 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHh
Confidence 3556677788899999999998 8887654333333332211 11 44677764 55797665421
Q ss_pred --------CCCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 66 --------FPVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 66 --------~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.+..+|+++.. +++.++++++-|+++++
T Consensus 385 ~~~~~~~~~~~~iRis~~~---~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 385 YSVPHQKHFDHYIRFCFVK---DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp SCHHHHTTSCSEEEEECCC---CHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHh
Confidence 24568888763 57889999998888765
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.02 E-value=1 Score=37.38 Aligned_cols=92 Identities=9% Similarity=0.004 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEe-cC------------CCCHHH--HHHHHhhcCceecCCC----
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALG-SD------------VFHIYR--LSSGLNKRGWNTNSLQ---- 65 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~-~~------------~~~i~~--l~d~L~~rGW~v~~~~---- 65 (143)
++.+.+.+.++++.+.|+++||+++. .|+...+.|- .+ +.+-.. +.+.|+++|-.+....
T Consensus 383 ~~~~~l~~~~~~l~~~L~~~~g~~~~-~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~ 461 (498)
T 3ihj_A 383 SVLGNLAKKAKLTEDLFNQVPGIHCN-PLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQ 461 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTEECC-CCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEec-CCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC
Confidence 34466778889999999999999865 4555555552 11 233333 4667788897765421
Q ss_pred --CCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 66 --FPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 66 --~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
.+..+|+++. .+++.++++++-|++.++..++
T Consensus 462 ~~~~~~~Ris~~---~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 462 REGTYHFRMTIL---PPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp CTTCCBEEEECC---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 2236888884 2468899999999988877653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.35 Score=39.23 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecC-CCC-----------HHHHHHHHhhcCceecCCCCCCeeeE
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSD-VFH-----------IYRLSSGLNKRGWNTNSLQFPVGIHI 72 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~-~~~-----------i~~l~d~L~~rGW~v~~~~~P~~ihi 72 (143)
.+++.+..++++++|+++.++..+++ +.-+++.|... ..+ ..++++.|.++|-.+... ...+|+
T Consensus 341 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~~~iRi 418 (448)
T 3dod_A 341 VEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL--GDVIAF 418 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE--TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc--CCEEEE
Confidence 44555666777777765433322222 22234444321 111 367899999999776433 355676
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+... ..+++.++++++-|+++++++...
T Consensus 419 ~~~~-~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 419 LPPL-ASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp CCCT-TCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCC-CCCHHHHHHHHHHHHHHHHHHhcc
Confidence 5543 345789999999999999888654
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.76 Score=36.98 Aligned_cols=97 Identities=9% Similarity=0.089 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec----CCCCHHHH-----HHHH-hhcCcee-cCCC--------
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS----DVFHIYRL-----SSGL-NKRGWNT-NSLQ-------- 65 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~----~~~~i~~l-----~d~L-~~rGW~v-~~~~-------- 65 (143)
+..++..+.++++.++|+++ |++++.+.....+.+.. .+.+-.++ +++| .++|-.+ +...
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~ 391 (456)
T 2ez2_A 313 EYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNV 391 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTT
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCcc
Confidence 34455566778899999986 88876544444444432 23333344 6666 6777653 2110
Q ss_pred -----C--CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 66 -----F--PVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 66 -----~--P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
. ...+|+++...+.+++.++++++-|+++++....-+
T Consensus 392 ~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 435 (456)
T 2ez2_A 392 TGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIR 435 (456)
T ss_dssp TCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGGGCC
T ss_pred ccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhhhcC
Confidence 1 245777776432568899999999999987765443
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.57 Score=37.80 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec----CCCC-----HHHHHHHH-hhcCceecC-CC-----CC---
Q psy10208 7 TRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS----DVFH-----IYRLSSGL-NKRGWNTNS-LQ-----FP--- 67 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~----~~~~-----i~~l~d~L-~~rGW~v~~-~~-----~P--- 67 (143)
.++..+.++++.++|+++ |++++ ++....+.|.. ...+ -..+.+.| .++|-.+.. .. .|
T Consensus 327 ~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g 404 (467)
T 2oqx_A 327 LAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTG 404 (467)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTC
T ss_pred HHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccccccccccccccc
Confidence 344567788999999998 88877 43333444442 1223 34568888 889977754 21 02
Q ss_pred -------CeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 68 -------VGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 68 -------~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
..+|+++....++++.++++++-|+++++.++.
T Consensus 405 ~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 444 (467)
T 2oqx_A 405 KQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp SBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred ccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 457776654315678999999999999876654
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.98 Score=35.32 Aligned_cols=86 Identities=13% Similarity=-0.014 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHH-hhcCceecCC-----------CCCCeee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGL-NKRGWNTNSL-----------QFPVGIH 71 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L-~~rGW~v~~~-----------~~P~~ih 71 (143)
.+..+.+.+..+++.+.|+++ +.+........+.+..+..+-.++.++| +++|-.+... ..+..+|
T Consensus 297 ~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iR 374 (396)
T 3jtx_A 297 IDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVR 374 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEE
Confidence 455566777788888888876 3333222233444555556778899988 5579877542 1245688
Q ss_pred EEEEecccChhHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 72 i~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
|++.. +++.++++++-|+++
T Consensus 375 is~~~---~~~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 375 IALVA---DVATCVKAAEDIVSL 394 (396)
T ss_dssp EECCS---CHHHHHHHHHHHHHH
T ss_pred EEEcC---CHHHHHHHHHHHHHH
Confidence 88753 567788888777765
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.47 Score=37.34 Aligned_cols=86 Identities=12% Similarity=0.025 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEec--cCceeEEEEecCCCCHHHHHHHHh-hcCceecCCCCCCeeeEEEEecccChh
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFG--TPATSVIALGSDVFHIYRLSSGLN-KRGWNTNSLQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg--~p~l~vVaf~~~~~~i~~l~d~L~-~rGW~v~~~~~P~~ihi~v~~~h~~~~ 82 (143)
..+++.+.++++.++|++++. .++. .+..+++.|.... +..++.+.|. ++|..+... .+..+|+++.. ..+++
T Consensus 306 ~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~l~~~l~~~~gi~v~~~-~~~~iRi~~~~-~~~~~ 381 (395)
T 1vef_A 306 LWERAAELGPWFMEKLRAIPS-PKIREVRGMGLMVGLELKE-KAAPYIARLEKEHRVLALQA-GPTVIRFLPPL-VIEKE 381 (395)
T ss_dssp THHHHHHHHHHHHHHHHTSCC-TTEEEEEEETTEEEEEESS-CSHHHHHHHHHHHCEECEES-STTEEEECCCT-TCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CceEEEEEEEEEEEEEEcC-hHHHHHHHHHHHCCeEEecC-CCCEEEEeCCC-CCCHH
Confidence 355677788999999998843 2222 2233466665432 3567899998 899888653 25568887653 44578
Q ss_pred HHHHHHHHHHHHH
Q psy10208 83 VADKFISDVREEL 95 (143)
Q Consensus 83 ~~~~fl~Dl~~ai 95 (143)
.++++++-|++++
T Consensus 382 ~i~~~~~~l~~~l 394 (395)
T 1vef_A 382 DLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8889988888764
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=90.62 E-value=0.92 Score=36.69 Aligned_cols=89 Identities=8% Similarity=-0.005 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHhhcCceecC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLNKRGWNTNS 63 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~~rGW~v~~ 63 (143)
+....++..++++++++.|++.|.++-+.-|. -.+++|..++ .....+.+.|+-.+-.++.
T Consensus 264 l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~ 343 (400)
T 3nmy_A 264 LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESL 343 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCC
Confidence 34567788899999999999999888765554 3588888753 2244566666533211110
Q ss_pred ---------------CCC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 64 ---------------LQF-----------PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 64 ---------------~~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
... +.-+|++|.. +.++.+++||+.+++
T Consensus 344 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl-----e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 344 GGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI-----EDLGDLRGDLERALV 397 (400)
T ss_dssp CSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS-----SCHHHHHHHHHHHHC
T ss_pred CCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc-----CCHHHHHHHHHHHHh
Confidence 011 2335666643 688999999999986
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=90.52 E-value=1.3 Score=34.78 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhh----CCCeeEeccCceeEEEEecC-CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 7 TRSIIETVKYIEKELRS----MDGLFIFGTPATSVIALGSD-VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~----i~g~~vlg~p~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
.+++.+..+++.+.|++ ++.+..+ .+..+.+.|... ..+..++.+.|.++|-.+.... +..+|++... .+++
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~iRi~~~~-~~t~ 378 (395)
T 3nx3_A 302 LENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKSVKVAKVIQKCQENALLLISCG-ENDLRFLPPL-ILQK 378 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-TTEEEECCCT-TCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCC-CCEEEEECCC-CCCH
Confidence 34455556666666654 4544332 122334555443 2467889999999998776432 5568887654 3457
Q ss_pred hHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELA 96 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~ 96 (143)
+.++++++-|+++++
T Consensus 379 e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 379 EHIDEMSEKLRKALK 393 (395)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998875
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=2.6 Score=33.47 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccC-----------------ceeEEEEecCCCCHHHHHHHHhhcCceecCC---
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTP-----------------ATSVIALGSDVFHIYRLSSGLNKRGWNTNSL--- 64 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----------------~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~--- 64 (143)
...++..++++.+++.+++.+.++-+--| ..++++|..++ ..++...|.+.|..+...
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~~s~G 334 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLAVSLG 334 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEBSCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEECcCCC
Confidence 34566677888888888887554432111 24688888754 456677777777544221
Q ss_pred --------C-----------------C-CCeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 65 --------Q-----------------F-PVGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 65 --------~-----------------~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
. . +..+|+++.. +..+.+++||+++++
T Consensus 335 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~-----~~~~~li~~l~~al~ 387 (389)
T 3acz_A 335 CVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI-----ENVDDIIADLKQALE 387 (389)
T ss_dssp CSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS-----SCHHHHHHHHHHHHT
T ss_pred CcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc-----CCHHHHHHHHHHHHh
Confidence 0 1 3457777753 478899999999875
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=4.2 Score=32.90 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=39.3
Q ss_pred HHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 47 IYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
..++.+.|.++|-.+.....+..+||+... ..+++.++++++-|+++++++.+
T Consensus 406 ~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~-~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 406 GPQVATALAASGVIGRAMPQGDILGFAPPL-CLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp HHHHHHHHHHTTEECEECSSSCEEEECCCT-TCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCeEEecCCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999777654433567775533 34578999999999999987754
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=90.06 E-value=0.74 Score=37.46 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhhC----CC-eeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 6 TTRSIIETVKYIEKELRSM----DG-LFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i----~g-~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
..+++.+..+++.++|+++ ++ +..+ .+..+.++|.... .+..++.+.|.++|-.+.... +..+|+++.. .+
T Consensus 353 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~~iRi~~~~-~~ 429 (449)
T 2cjg_A 353 LFERAVQHGKYLRARLDELAADFPAVVLDP-RGRGLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPL-TV 429 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-TTEEEECCCT-TC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceeeE-eeccEEEEEEECChHHHHHHHHHHHHCCeEEecCC-CCEEEEECCC-CC
Confidence 3456667788888888764 44 4322 2334456665432 234678999999997776432 4567776543 34
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAII 98 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~ 98 (143)
+++.++++++-|+++++.+
T Consensus 430 t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 430 STAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5789999999999988754
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.46 Score=39.26 Aligned_cols=91 Identities=10% Similarity=0.112 Sum_probs=54.6
Q ss_pred HHHHH-HHHHHHHHHHhhCCCeeEecc--CceeEEEEec--CC-----C--C----HHHHHHHHhhcCceecCCCCCCee
Q psy10208 7 TRSII-ETVKYIEKELRSMDGLFIFGT--PATSVIALGS--DV-----F--H----IYRLSSGLNKRGWNTNSLQFPVGI 70 (143)
Q Consensus 7 ~~~~~-~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~--~~-----~--~----i~~l~d~L~~rGW~v~~~~~P~~i 70 (143)
.+++. +..++++++|+++..+..+++ +..+.++|.. +. + + ...+.+.|.++|-.+.... ..+
T Consensus 348 ~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~i 425 (472)
T 3hmu_A 348 LDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG--DRM 425 (472)
T ss_dssp HHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET--TEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC--CEE
Confidence 44555 566778888776532222221 2223444432 11 1 1 4578899999998776433 456
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
|++... ..+++.++++++-|+++++.+.+
T Consensus 426 Ri~p~~-~~t~e~i~~~l~~l~~~l~~~~~ 454 (472)
T 3hmu_A 426 IISPPL-VITPAEIDEMFVRIRKSLDEAQA 454 (472)
T ss_dssp EECCCT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 665432 34578999999999998876653
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=89.36 E-value=0.71 Score=36.98 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC--CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV--FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~--~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
..+++.+..+++.++|+++ +..+ .+..+.+.|...+ .+-. +.+.|.++|-.+.... +..+|+++.. ..+++.
T Consensus 330 ~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~-~~~lRis~~~-~~t~e~ 403 (419)
T 2eo5_A 330 LLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG-RSAIRVIPPL-VISEEE 403 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET-TTEEEECCCT-TCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC-CCEEEEECCC-CCCHHH
Confidence 4556677788888888886 2211 2334455565421 1234 8889999998776543 4567876643 345789
Q ss_pred HHHHHHHHHHHHHHH
Q psy10208 84 ADKFISDVREELAII 98 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~~ 98 (143)
++++++-|+++++.+
T Consensus 404 i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 404 AKQGLDILKKVIKVV 418 (419)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=5.5 Score=31.75 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEec-------------cC----ceeEEEEecCCCCHHHHHHHHhhcCceecCCC---
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFG-------------TP----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--- 65 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg-------------~p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--- 65 (143)
..++..++++.+.+.+++.+.+.-+- .| ..++++|..++. ..++.+.|.+.|..+....
T Consensus 263 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~i~~~~~s~G~ 341 (404)
T 1e5e_A 263 RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNLKLITLAVSLGG 341 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTCSSSEESSCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-HHHHHHHHHhCCCceeccCCCC
Confidence 34455677888888888775443111 11 267899966541 2345666777775333210
Q ss_pred -------------------------C-CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 66 -------------------------F-PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 66 -------------------------~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
. +..+|+++.. +.+++++++|+++++.+-.
T Consensus 342 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~-----e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 342 CESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI-----EDADELIADFKQGLDALLR 397 (404)
T ss_dssp SSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS-----SCHHHHHHHHHHHHHHHHC
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC-----CCHHHHHHHHHHHHHHHHH
Confidence 1 3457887764 6899999999999876553
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=4.7 Score=31.87 Aligned_cols=89 Identities=10% Similarity=-0.007 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCee--------------Eecc---CceeEEEEecCCCCHHHHHHHHhhcCceecC---
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLF--------------IFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNS--- 63 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~--------------vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~--- 63 (143)
....++..++++.+.+.|+++++++ +.++ ...++++|...+- -.++...+.+.|-....
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~i~~~~~s~ 341 (398)
T 1gc0_A 263 NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG-IGAGRRFMNALQLFSRAVSL 341 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH-HHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC-HHHHHHHHHhCCCceeccCC
Confidence 4456677788888888888876544 2222 1457888876531 22345555555533221
Q ss_pred C---------------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 64 L---------------QF-----------PVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 64 ~---------------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
. .. +..+|+++.. +..++.++|+.++++.+
T Consensus 342 G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~-----~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 342 GDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL-----EDIDDLLADVQQALKAS 397 (398)
T ss_dssp SCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS-----SCHHHHHHHHHHHHHHH
T ss_pred CCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHHHHhc
Confidence 0 01 3568888764 45677777877777654
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=1.3 Score=35.42 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCC--------------CCHHHHHHHHhhcCceecCCCCCC
Q psy10208 6 TTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDV--------------FHIYRLSSGLNKRGWNTNSLQFPV 68 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~--------------~~i~~l~d~L~~rGW~v~~~~~P~ 68 (143)
..+++.+.++++.++|+++. ++.....+.-+++.|.... .+..++.+.|.++|-.+.....+
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~- 404 (434)
T 2epj_A 326 VYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLE- 404 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCC-
Confidence 34566677888888887751 3321112233345554322 12457889999999887654322
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
++.+. ...+++.++++++-|+++++.+.
T Consensus 405 --~~~~~-~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 405 --AVFTG-LPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp --CEECC-TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred --cEEEe-ccCCHHHHHHHHHHHHHHHHHHh
Confidence 44444 34467899999999999987763
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=88.61 E-value=0.74 Score=35.25 Aligned_cols=51 Identities=18% Similarity=0.093 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhC--------------CCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCcee
Q psy10208 9 SIIETVKYIEKELRSM--------------DGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNT 61 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~i--------------~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v 61 (143)
+..++++.+.+.+++. ||+++.+. ...++++|... +..++...|.++|..+
T Consensus 202 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~ 269 (331)
T 1pff_A 202 RAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHVVS 269 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSSSE
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCCce
Confidence 3445556666655543 34444432 13568888765 5678889999999854
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=0.93 Score=36.86 Aligned_cols=51 Identities=8% Similarity=-0.132 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 47 IYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 47 i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
...+.+.|.++|-.+.... ..+||+... .++++.++++++-|+++++.+.+
T Consensus 401 ~~~~~~~l~~~Gv~v~~~g--~~iRi~~~~-~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 401 GTLCRDIFFRNNLIMRACG--DHIVSAPPL-VMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp HHHHHHHHHHTTEECEEET--TEEEECCCT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEecCC--CEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999997665432 556765433 34678999999999999887754
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=88.07 E-value=0.7 Score=37.23 Aligned_cols=88 Identities=9% Similarity=-0.007 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhhC--------------CCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCC-----
Q psy10208 7 TRSIIETVKYIEKELRSM--------------DGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSL----- 64 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i--------------~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~----- 64 (143)
.++..++++.+++.+++. ||+++... ...++++|..++- ..++...|.+.|....+.
T Consensus 267 ~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~l~~~~i~~~~~s~G~~ 345 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-LQHAEIFLKNLKLFTLAESLGGF 345 (403)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHHHHHCSSSEECSCCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-HHHHHHHHHhCCcceEccCCCCc
Confidence 344455555666655544 45554432 1267888876432 245666777777643211
Q ss_pred -------------C----------C-CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 65 -------------Q----------F-PVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 65 -------------~----------~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
. . +..+|++|.. +..+++++||.++++.+.+
T Consensus 346 ~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~-----e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 346 ESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL-----EDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp SCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS-----SCHHHHHHHHHHHHHHHCC
T ss_pred ceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC-----CCHHHHHHHHHHHHHHhhc
Confidence 1 1 3457887764 4678889999999887654
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=2.2 Score=33.76 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=49.9
Q ss_pred HHHHHHHhhC---CCeeEeccCceeEEEEecCCCCHH------HHH-HHHhhcCceecCCC-CC---CeeeEEEEecccC
Q psy10208 15 KYIEKELRSM---DGLFIFGTPATSVIALGSDVFHIY------RLS-SGLNKRGWNTNSLQ-FP---VGIHICITHMHTQ 80 (143)
Q Consensus 15 ~~l~~~i~~i---~g~~vlg~p~l~vVaf~~~~~~i~------~l~-d~L~~rGW~v~~~~-~P---~~ihi~v~~~h~~ 80 (143)
+.|.+.+.++ +|+.+...|.-.++.+.... +.. +++ ..|+++|-.+.... +| ..+||+++.....
T Consensus 275 ~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~ 353 (374)
T 2aeu_A 275 EKLNKELKAIDDNINIVYERTPTGFVIKRVYKD-DTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAE 353 (374)
T ss_dssp HHHHHHHTTTCTTEEEEEEECSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGG
T ss_pred HHHHHhhhhhhhccCcceeeCCceEEEEeeccc-ccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHH
Confidence 3444445554 46666556665555553211 111 144 44567898775532 23 3589988754544
Q ss_pred hhHHHHHHHHHHHHHHHHHc
Q psy10208 81 PGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+..++++++-|+++++++.+
T Consensus 354 ~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 354 RIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp GSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44488999988888887753
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=0.55 Score=36.85 Aligned_cols=82 Identities=9% Similarity=-0.001 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEeccc
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHT 79 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~ 79 (143)
..+..+...+.++++.++|++++ ++++.. |....+.|- +++-..+...|+++|..+.. ++|+++. ++
T Consensus 308 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~l~~~gi~v~~-----~~Ris~~--~~ 377 (394)
T 2ay1_A 308 LEAVRSGMLRLREQLAGELRDLSGSDRFGFVA-EHRGMFSRL--GATPEQVKRIKEEFGIYMVG-----DSRINIA--GL 377 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHH-HCCSSEEEC--CCCHHHHHHHHHHHCEECCT-----TCEEEGG--GC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEc-CCceEEEee--CCCHHHHHHHHHhCCEEecC-----CCeEEee--cC
Confidence 34556666777888888888874 466553 332233342 22335677888899998863 4788865 44
Q ss_pred ChhHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREE 94 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~a 94 (143)
+++.++.+++-|+++
T Consensus 378 ~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 378 NDNTIPILARAIIEV 392 (394)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHc
Confidence 568889998888765
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=87.60 E-value=0.1 Score=41.34 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCCeeEeccCceeEEE-EecC--CCCHHHHHHHHh-hcCceecCCC-----CCCeeeEE
Q psy10208 4 VNTTRSIIETVKYIEKELRS-MDGLFIFGTPATSVIA-LGSD--VFHIYRLSSGLN-KRGWNTNSLQ-----FPVGIHIC 73 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~-i~g~~vlg~p~l~vVa-f~~~--~~~i~~l~d~L~-~rGW~v~~~~-----~P~~ihi~ 73 (143)
.+..+...+.++++.+.|++ +||+++.. |..+.+. +... +.+..++.+.|. ++|..+.... .+..+|++
T Consensus 293 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~ 371 (392)
T 3b1d_A 293 VALKAVLEENIQFAVEYFAQEAPRLKVMK-PQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN 371 (392)
Confidence 44555667778888888988 78887754 4444443 3332 246668889995 7898886532 23457888
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+.. .++.++++++-|++++
T Consensus 372 ~~~---~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 372 IAA---PKSLVEEICKRIVCCL 390 (392)
Confidence 763 2356777777666654
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=0.58 Score=37.57 Aligned_cols=92 Identities=4% Similarity=-0.130 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhh----CCCeeEeccCceeEEEEec---------CCCCHHHHHHHHhhcCceecCCC-CCCeeeE
Q psy10208 7 TRSIIETVKYIEKELRS----MDGLFIFGTPATSVIALGS---------DVFHIYRLSSGLNKRGWNTNSLQ-FPVGIHI 72 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~----i~g~~vlg~p~l~vVaf~~---------~~~~i~~l~d~L~~rGW~v~~~~-~P~~ihi 72 (143)
.+++.+..+++.++|++ .+.+..+ .+.-+.+.|.. +..+..++.+.|.++|-.+.... .+..+|+
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi 400 (439)
T 3dxv_A 322 PAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEF 400 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEE
Confidence 44555666777777765 3444332 12223333322 12335678899999997765433 3466787
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++... .+++.++++++-|+++++++.+
T Consensus 401 ~~~~~-~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 401 TPPLT-ITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp CCCTT-CCHHHHHHHHHHHHHHHHTGGG
T ss_pred ECCCC-CCHHHHHHHHHHHHHHHHHHhc
Confidence 76543 3578999999999999877654
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=0.75 Score=37.93 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhhC----CC-eeEeccCceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 7 TRSIIETVKYIEKELRSM----DG-LFIFGTPATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i----~g-~~vlg~p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
.+++.+.+++|.++|+++ |+ +.-+ .+...+++|.... .+..++..+|.++|-.+.... +..+|+++...+ +
T Consensus 377 ~~~~~~~~~~l~~~L~~l~~~~~~~v~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g-~~~iRi~~~~~~-t 453 (472)
T 1ohv_A 377 LSNAAHAGKVLLTGLLDLQARYPQFISRV-RGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCG-DKSIRFRPTLVF-R 453 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EEETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-TTEEEECCCTTC-C
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEee-cCCceEEEEEeCChhHHHHHHHHHHHCCeEEecCC-CCEEEEECCCCC-C
Confidence 456666778888888765 32 3211 2334466665432 235678999999997765421 456788766434 5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELAII 98 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~~~ 98 (143)
++.++++++-|+++++.+
T Consensus 454 ~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 454 DHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 789999999999887653
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=86.64 E-value=1.2 Score=36.13 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeE--ec-----------cCceeEEEE-ecCCCCHHHHHHHH-hhcCceecCCC----C
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFI--FG-----------TPATSVIAL-GSDVFHIYRLSSGL-NKRGWNTNSLQ----F 66 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~v--lg-----------~p~l~vVaf-~~~~~~i~~l~d~L-~~rGW~v~~~~----~ 66 (143)
..+.+.+..+++.+.|++++|+++ +. .|....+.| ..+. +..++.++| +++|..+.... .
T Consensus 318 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~~ 396 (427)
T 2hox_A 318 GFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEAS 396 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTSC
T ss_pred HHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCCccCCC
Confidence 345666778899999999989886 32 232233343 3332 333456665 57898875422 2
Q ss_pred CCeeeEEEEecccChhHHHHHHHHHHHHH
Q psy10208 67 PVGIHICITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 67 P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
+..+|+++.. +++.++++++-|++.+
T Consensus 397 ~~~~Ris~~~---~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 397 SRYVRLSLIK---TQDDFDQLMYYLKDMV 422 (427)
T ss_dssp TTEEEEECSS---CHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecC---CHHHHHHHHHHHHHHH
Confidence 5578998873 4577888888877765
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=86.60 E-value=0.4 Score=37.62 Aligned_cols=80 Identities=5% Similarity=0.018 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 5 NTTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
+..+.+.+.++++.+.|++++ ++++.. |..+.+.|. +++-..+...|+++|..+.. ++|+++. +.++
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~gv~v~~-----~~Ris~~--~~~~ 382 (396)
T 2q7w_A 313 DMRQRIQRMRQLFVNTLQEKGANRDFSFII-KQNGMFSFS--GLTKEQVLRLREEFGVYAVA-----SGRVNVA--GMTP 382 (396)
T ss_dssp HC-CHHHHHHHHHHHHHHHTTCCSCCTHHH-HCCSSEEEC--CCCHHHHHHHHHHHCEECCT-----TCEEEGG--GCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCCceEEEe--cCCHHHHHHHHHhcCeeecC-----CceEEEe--ecCH
Confidence 445566777888999999885 366543 444444553 23345677788889998863 4788876 3356
Q ss_pred hHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREE 94 (143)
Q Consensus 82 ~~~~~fl~Dl~~a 94 (143)
+.++++++-|+++
T Consensus 383 e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 383 DNMAPLCEAIVAV 395 (396)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8888998888765
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=86.55 E-value=1.6 Score=34.73 Aligned_cols=90 Identities=9% Similarity=-0.090 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhC----CCeeEeccCceeEEEEecC---------CCCHHHHHHHHhhcCceecCCC-CC--Cee
Q psy10208 7 TRSIIETVKYIEKELRSM----DGLFIFGTPATSVIALGSD---------VFHIYRLSSGLNKRGWNTNSLQ-FP--VGI 70 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i----~g~~vlg~p~l~vVaf~~~---------~~~i~~l~d~L~~rGW~v~~~~-~P--~~i 70 (143)
.+++.+..+++.++|+++ +.+..+ .+..+.+.|... ..+..++.+.|.++|-.+.... .. ..+
T Consensus 327 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~l 405 (433)
T 1zod_A 327 VARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVF 405 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEE
Confidence 345556677888888764 443322 222334444321 1335678999999998775533 22 557
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
||++.. ..+++.++++++-|+++++.+
T Consensus 406 Ri~~~~-~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 406 RIAPPL-TVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp EECCCT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCc-CCCHHHHHHHHHHHHHHHHHh
Confidence 776543 345789999999999987654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.89 E-value=2.7 Score=33.84 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCC----------------CCHHHHHHHHh-hcCceecCCC
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDV----------------FHIYRLSSGLN-KRGWNTNSLQ 65 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~----------------~~i~~l~d~L~-~rGW~v~~~~ 65 (143)
+.+..+...+.++++.+.|+++ |+++........+.+.... .+-.++.++|. ++|-.+....
T Consensus 329 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~ 407 (447)
T 3b46_A 329 FEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPT 407 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECch
Confidence 3455667778888999999998 7887643323334444332 35568888886 5898775431
Q ss_pred -C---------CCeeeEEEEecccChhHHHHHHHHHH
Q psy10208 66 -F---------PVGIHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 66 -~---------P~~ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
+ +..+|+++. + +++.+++.++-|+
T Consensus 408 ~f~~~~~~~~~~~~iRls~~--~-~~e~l~~~~~~l~ 441 (447)
T 3b46_A 408 EFYIKEHEKAAENLLRFAVC--K-DDAYLENAVERLK 441 (447)
T ss_dssp GGSCGGGGGGGTTEEEEECC--S-CHHHHHHHHHHGG
T ss_pred HhCCCCccCCCCCEEEEEEe--C-CHHHHHHHHHHHH
Confidence 1 456888875 2 3455555555444
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=85.86 E-value=0.9 Score=37.63 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=41.8
Q ss_pred HhhCCCeeEeccC---ceeEEEEecCCCC-HHHHHHHHhhcCceecCCC-------------------------C-CCee
Q psy10208 21 LRSMDGLFIFGTP---ATSVIALGSDVFH-IYRLSSGLNKRGWNTNSLQ-------------------------F-PVGI 70 (143)
Q Consensus 21 i~~i~g~~vlg~p---~l~vVaf~~~~~~-i~~l~d~L~~rGW~v~~~~-------------------------~-P~~i 70 (143)
|+++|++++.... ..++++|..++.+ ...+.+.|+..|-.++... . +..+
T Consensus 360 L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~i 439 (464)
T 1ibj_A 360 LPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLV 439 (464)
T ss_dssp STTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCE
T ss_pred CCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeE
Confidence 3445566655432 2468888865322 2347777765544332211 1 2357
Q ss_pred eEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 71 HICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 71 hi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
|+++.. +.+++++++|+++++
T Consensus 440 Rlsvg~-----edi~~li~~L~~al~ 460 (464)
T 1ibj_A 440 RISAGI-----EDVDDLISDLDIAFK 460 (464)
T ss_dssp EEECCS-----SCHHHHHHHHHHHHH
T ss_pred EEEeCC-----CCHHHHHHHHHHHHh
Confidence 777653 689999999999875
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.72 E-value=5.6 Score=32.25 Aligned_cols=93 Identities=10% Similarity=0.011 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhh----CCCeeEeccCceeEEEEec--------CCCCHHHHHHHHhhcCceecCC-CCCCeeeEE
Q psy10208 7 TRSIIETVKYIEKELRS----MDGLFIFGTPATSVIALGS--------DVFHIYRLSSGLNKRGWNTNSL-QFPVGIHIC 73 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~----i~g~~vlg~p~l~vVaf~~--------~~~~i~~l~d~L~~rGW~v~~~-~~P~~ihi~ 73 (143)
.+++.+..++++++|++ .+++..+. +.-..+.|.. +..+..++.+.|.++|-.+... ..+..+|++
T Consensus 347 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~ 425 (453)
T 4ffc_A 347 PARARAIEASVTSRLSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLL 425 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEE
Confidence 34445556666666654 45443321 1122333322 1123567889999999766542 334567776
Q ss_pred EEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 74 ITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+.. ..+++.++++++-|+++++++.++
T Consensus 426 ~~~-~~t~e~i~~~l~~l~~~l~~~~~~ 452 (453)
T 4ffc_A 426 PPL-VIGDDLLDEGITALSDIIRAKASH 452 (453)
T ss_dssp CCT-TCCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 654 335789999999999999877543
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=85.69 E-value=3.8 Score=32.61 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHhhC----CCeeEeccCceeEEEEec--CCC------------CHHHHHHHHhhcCceecCCCCC
Q psy10208 6 TTRSIIETVKYIEKELRSM----DGLFIFGTPATSVIALGS--DVF------------HIYRLSSGLNKRGWNTNSLQFP 67 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i----~g~~vlg~p~l~vVaf~~--~~~------------~i~~l~d~L~~rGW~v~~~~~P 67 (143)
..+++.+..+++.++|+++ +....+ .+..+.+.|.. ... +...+.+.|.++|-.+.....
T Consensus 325 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~- 402 (434)
T 3l44_A 325 LYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY- 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC-
Confidence 3455666777777777663 322111 12223344422 211 125688999999977764432
Q ss_pred CeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 68 VGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 68 ~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
..+++ . ...+++.++++++-|+++++.++.+
T Consensus 403 ~~~rl--~-~~~t~e~i~~~l~~l~~~l~~~~~~ 433 (434)
T 3l44_A 403 EAWFL--T-TEHTKEDIEYTIEAVGRAFAALADN 433 (434)
T ss_dssp CCEEC--C-TTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcEEE--e-cccCHHHHHHHHHHHHHHHHHHHhc
Confidence 23444 3 3446799999999999999888653
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=85.47 E-value=2.6 Score=33.45 Aligned_cols=87 Identities=10% Similarity=0.100 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCce-------------eEEEEecCCCCHHHHHHHHhhcCceecCCC----CC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPAT-------------SVIALGSDVFHIYRLSSGLNKRGWNTNSLQ----FP 67 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l-------------~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~----~P 67 (143)
+..+...+..+++.+.|++++|+++.+.... ..+-+..+.- ..+.+.|+++|-.+.... .+
T Consensus 282 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~--~~~~~~l~~~gV~v~pg~~fg~~~ 359 (391)
T 3bwn_A 282 YGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE--TDLVSELRRHKVMSRAGERCGSDK 359 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS--CCHHHHHHHTTEECEEGGGGTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH--HHHHHHHHHCCEEEccCCCCCCCC
Confidence 3455566778889999999988887532110 1233333321 256677888998775532 14
Q ss_pred CeeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 68 VGIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 68 ~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
..+|+++.. +++.++++++-|+++++
T Consensus 360 ~~iRis~~~---~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 360 KHVRVSMLS---REDVFNVFLERLANMKL 385 (391)
T ss_dssp TEEEEESCS---CHHHHHHHHHHHHSCC-
T ss_pred CEEEEEecC---CHHHHHHHHHHHHHHHH
Confidence 568888863 45667777777766543
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=84.66 E-value=3.6 Score=33.06 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCC--------------------CCHHHHHHHHhhcCceec
Q psy10208 6 TTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDV--------------------FHIYRLSSGLNKRGWNTN 62 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~--------------------~~i~~l~d~L~~rGW~v~ 62 (143)
..+++.+.++++.++|+++. ++.....+..+++.|.... .+..++.+.|.++|-.+.
T Consensus 326 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~ 405 (453)
T 2cy8_A 326 VCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIG 405 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEe
Confidence 34566677888888887651 2322123343455554332 124678899999998883
Q ss_pred CCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 63 SLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 63 ~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
|.+ ++.+. ...+++.++++++-|+++++.+++..
T Consensus 406 ----~~~-~~~l~-~~~t~~~i~~~l~~l~~~l~~~~~~~ 439 (453)
T 2cy8_A 406 ----GRG-SVFLS-AQHEREHVEHLVTTFDRVLDRLADEN 439 (453)
T ss_dssp ----TTT-EEECC-TTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----CCC-CEEee-ccCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 221 34443 44568999999999999999887653
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=84.18 E-value=7.9 Score=30.66 Aligned_cols=90 Identities=11% Similarity=-0.001 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhh----CCCeeEeccCceeEEEEecCC----------CCHHHHHHHHhhcCceecCCC------C
Q psy10208 7 TRSIIETVKYIEKELRS----MDGLFIFGTPATSVIALGSDV----------FHIYRLSSGLNKRGWNTNSLQ------F 66 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~----i~g~~vlg~p~l~vVaf~~~~----------~~i~~l~d~L~~rGW~v~~~~------~ 66 (143)
.+++.+..++++++|++ +|++..+ .+..+.+.|...+ ....++.+.|.++|-.+.... .
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~ 397 (430)
T 3i4j_A 319 TGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGR 397 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEC------------CHHHHHHHHHHTTEECC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCC
Confidence 34455555666666554 5555443 2223344443321 123578999999997765431 1
Q ss_pred CCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 67 PVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 67 P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+..+|+++.. ..+++.++++++-|+++++++
T Consensus 398 ~~~iRi~~~~-~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 398 GDHLLLGPPL-SITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp -CEEEECCCT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 3346665432 345789999999999998765
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=2.1 Score=33.36 Aligned_cols=81 Identities=6% Similarity=0.014 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
.+..+++.+.++++.++|++++ |+++.. |+...+.|. +++-..+...|.++|-.+.... |+++. ..+
T Consensus 313 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~-----Ris~~--~~~ 382 (397)
T 3fsl_A 313 EEMRTRILAMRQELVKVLSTEMPERNFDYLL-NQRGMFSYT--GLSAAQVDRLREEFGVYLIASG-----RMCVA--GLN 382 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCCTHHH-HCCSSEEEC--CCCHHHHHHHHHTTCEECCTTC-----EEEGG--GCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceeec-CCceEEEec--CCCHHHHHHHHHhCCEEECCCC-----eEEEE--ecC
Confidence 3456667778889999999875 676543 333344442 3345567788889998886432 88775 323
Q ss_pred hhHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREE 94 (143)
Q Consensus 81 ~~~~~~fl~Dl~~a 94 (143)
.+.++.+++-|+++
T Consensus 383 ~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 383 TANVQRVAKAFAAV 396 (397)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhh
Confidence 45688888888765
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=83.72 E-value=4 Score=31.91 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC----CCC--------HHHHHHHH-hhcCceecCCC-C--
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD----VFH--------IYRLSSGL-NKRGWNTNSLQ-F-- 66 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~----~~~--------i~~l~d~L-~~rGW~v~~~~-~-- 66 (143)
+.+..+.+.+.++++.+.|+++ |+++........+.+... .++ ..++..+| +++|-.+.... +
T Consensus 299 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~ 377 (410)
T 3e2y_A 299 FNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCD 377 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCC
Confidence 3456677788889999999998 888765433333332221 121 24666655 67797775421 1
Q ss_pred -------CCeeeEEEEecccChhHHHHHHHHHH
Q psy10208 67 -------PVGIHICITHMHTQPGVADKFISDVR 92 (143)
Q Consensus 67 -------P~~ihi~v~~~h~~~~~~~~fl~Dl~ 92 (143)
+..+|+++.. +++.++++++-|+
T Consensus 378 ~~~~~~~~~~iRis~~~---~~e~l~~~l~~l~ 407 (410)
T 3e2y_A 378 SKSKPHFEKLVRFCFIK---KDSTLDAAEEIFR 407 (410)
T ss_dssp TTTHHHHTTEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEcC---CHHHHHHHHHHHH
Confidence 2457888753 4566666666554
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=83.44 E-value=2.6 Score=32.98 Aligned_cols=81 Identities=6% Similarity=0.007 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccCh
Q psy10208 5 NTTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQP 81 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~ 81 (143)
+..+++.+.++++.++|++++ ++++. .|+...+.|. +++-..+...++++|-.+. +++|+++.. +.++
T Consensus 317 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~-----~~~Ris~~~-~~~~ 387 (401)
T 7aat_A 317 GMADRIISMRTQLVSNLKKEGSSHNWQHI-TDQIGMFCFT--GLKPEQVERLTKEFSIYMT-----KDGRISVAG-VASS 387 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHCCSSEEEC--CCCHHHHHHHHHHHCEECC-----TTCEEEGGG-CCTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcee-cCCcceEEec--CCCHHHHHHHHHhCCEecc-----CCCeEEecc-CChh
Confidence 345567778888999998872 35433 3555556663 3444455445578898875 458999874 4444
Q ss_pred hHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREEL 95 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai 95 (143)
+ ++.+++-|++++
T Consensus 388 ~-i~~~~~~l~~~~ 400 (401)
T 7aat_A 388 N-VGYLAHAIHQVT 400 (401)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHh
Confidence 4 999999988775
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=83.27 E-value=5.2 Score=31.50 Aligned_cols=88 Identities=9% Similarity=-0.062 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCC--------------CeeEecc---CceeEEEEecCCC--CHHHHHHHHhhcCceecCC-
Q psy10208 5 NTTRSIIETVKYIEKELRSMD--------------GLFIFGT---PATSVIALGSDVF--HIYRLSSGLNKRGWNTNSL- 64 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~--------------g~~vlg~---p~l~vVaf~~~~~--~i~~l~d~L~~rGW~v~~~- 64 (143)
...++..++++.+.+.+++.+ ++++.+. ...++++|...+. +...+.+++...|-.++.-
T Consensus 263 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~ 342 (398)
T 2rfv_A 263 IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGD 342 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCCC
Confidence 344566677888888887754 3333332 2467888876532 2334444444444333221
Q ss_pred ------------------------C-CCCeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 65 ------------------------Q-FPVGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 65 ------------------------~-~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. .+..+|+++.. ...++.+++|.++++.
T Consensus 343 ~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~-----~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 343 TETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL-----EDPEDIINDLEHAIRK 395 (398)
T ss_dssp SSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCS-----SCHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEecC-----CCHHHHHHHHHHHHHh
Confidence 0 14568888864 2345556666666654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.51 E-value=4.5 Score=32.46 Aligned_cols=89 Identities=9% Similarity=0.015 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhC----CCeeEe-ccCceeEEEEecCC-----CC---HHHHHHHHhhcCceecCCCC-----CC
Q psy10208 7 TRSIIETVKYIEKELRSM----DGLFIF-GTPATSVIALGSDV-----FH---IYRLSSGLNKRGWNTNSLQF-----PV 68 (143)
Q Consensus 7 ~~~~~~~a~~l~~~i~~i----~g~~vl-g~p~l~vVaf~~~~-----~~---i~~l~d~L~~rGW~v~~~~~-----P~ 68 (143)
.+++.+..+++.++|+++ +++..+ +...+-.+-|..+. ++ ..++.+.|.++|-.+..... +.
T Consensus 344 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~ 423 (452)
T 3n5m_A 344 IERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNN 423 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCC
Confidence 445556667777777553 444332 22222223332211 11 34788999999987765542 34
Q ss_pred eeeEEEEecccChhHHHHHHHHHHHHHH
Q psy10208 69 GIHICITHMHTQPGVADKFISDVREELA 96 (143)
Q Consensus 69 ~ihi~v~~~h~~~~~~~~fl~Dl~~ai~ 96 (143)
.+|++... ..+++.++++++-|+++++
T Consensus 424 ~iRi~~~~-~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 424 ILTLAPPL-VISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp EEEECCCT-TCCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHHH
Confidence 56766543 3357899999999888764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=82.42 E-value=11 Score=29.95 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC-eeEeccC------------------c-eeEEEEecCC--CCHHHHHHHHhhcCcee
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDG-LFIFGTP------------------A-TSVIALGSDV--FHIYRLSSGLNKRGWNT 61 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g-~~vlg~p------------------~-l~vVaf~~~~--~~i~~l~d~L~~rGW~v 61 (143)
....++..++++.+.+.|++.+. +.-+.-| . -++++|..++ .+...+.+.|+..|=.+
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~ 333 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAE 333 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECC
Confidence 34566677888899999988766 5432111 2 4688887754 24556667765433111
Q ss_pred c-----------CCC--------------C-CCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 62 N-----------SLQ--------------F-PVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 62 ~-----------~~~--------------~-P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
+ +.. . +..+|+++.. +..++.++|+.++++.+.
T Consensus 334 s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~-----~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 334 SLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGI-----EDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp CCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCS-----SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEcc-----CCHHHHHHHHHHHHHHhh
Confidence 1 111 1 3457887765 456777788888777653
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.13 E-value=2.3 Score=33.81 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeEEEEecCC--------------CCHHHHHHHHhhcCceecCCCCC
Q psy10208 5 NTTRSIIETVKYIEKELRSMD---GLFIFGTPATSVIALGSDV--------------FHIYRLSSGLNKRGWNTNSLQFP 67 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~vVaf~~~~--------------~~i~~l~d~L~~rGW~v~~~~~P 67 (143)
+..+++.+..+++.++|+++. ++.....+..+++.|.... .+..++.+.|.++|-.+.....
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~- 399 (424)
T 2e7u_A 321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF- 399 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-
Confidence 355667778888888887751 3321112333455555432 1245788999999988765432
Q ss_pred CeeeEEEEecccChhHHHHHHHHHHHH
Q psy10208 68 VGIHICITHMHTQPGVADKFISDVREE 94 (143)
Q Consensus 68 ~~ihi~v~~~h~~~~~~~~fl~Dl~~a 94 (143)
.++.+. ...+++.++++++-|+++
T Consensus 400 --~~~~~~-~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 400 --EAAFLS-VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp --SCEECC-TTCCHHHHHHHHHHHHHH
T ss_pred --CceEee-ccCCHHHHHHHHHHHHHh
Confidence 234443 344578888888887765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 143 | ||||
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 2e-08 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 3e-04 |
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 49.5 bits (117), Expect = 2e-08
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 42 SDVFHIYRLSSGLNKRGWNTNSLQFPV-GIHICITHMHTQPGV----ADKFISDVREELA 96
+ +Y LS L RGW + I + + + G A+ + D + L
Sbjct: 385 DPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK 444
Query: 97 IIMQNP 102
+ +P
Sbjct: 445 YLSDHP 450
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.5 bits (86), Expect = 3e-04
Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 7/103 (6%)
Query: 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIAL---GSDVFHIYRLSSGLNKRGW 59
R ++ E + + ++ GSD + L +N
Sbjct: 374 LQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLN-EALLERINSARK 432
Query: 60 N---TNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIM 99
L+ + I + G +R A ++
Sbjct: 433 IHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 143 | |||
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.76 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.14 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 98.6 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 98.55 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 98.1 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.96 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 97.91 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 97.81 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 97.77 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 97.57 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 97.54 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 97.26 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 97.01 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 96.86 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 96.8 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 96.73 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 96.64 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 96.45 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 96.23 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 96.02 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 95.64 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 95.17 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 95.14 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 94.9 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 94.71 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 94.63 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 94.47 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 94.37 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 94.23 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 94.04 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 94.01 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 93.5 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 93.19 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 92.46 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 92.14 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 91.66 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 90.63 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 90.03 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 86.76 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 86.27 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 85.46 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 85.15 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 85.08 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 84.16 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 83.56 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 83.28 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 83.24 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 81.12 |
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1e-18 Score=145.42 Aligned_cols=101 Identities=16% Similarity=0.331 Sum_probs=91.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc----CceeEEEEec-----CCCCHHHHHHHHhhcCceecCCCCCCe--
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT----PATSVIALGS-----DVFHIYRLSSGLNKRGWNTNSLQFPVG-- 69 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~----p~l~vVaf~~-----~~~~i~~l~d~L~~rGW~v~~~~~P~~-- 69 (143)
+||+++++++++++++|.++|+++++|+++++ +.+|+|||+. ..+|.++|+++|+++||++++++.|+.
T Consensus 335 ~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~ 414 (450)
T d1pmma_ 335 EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEAT 414 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcC
Confidence 49999999999999999999999999999853 5699999986 368999999999999999999988763
Q ss_pred ----eeEEEEecccChhHHHHHHHHHHHHHHHHHcCC
Q psy10208 70 ----IHICITHMHTQPGVADKFISDVREELAIIMQNP 102 (143)
Q Consensus 70 ----ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~p 102 (143)
+|++|++ +++++++++|++||+++++.+++||
T Consensus 415 ~~~~lRvvv~~-~~t~e~~d~lv~dl~~~v~~l~~~p 450 (450)
T d1pmma_ 415 DIVVMRIMCRR-GFEMDFAELLLEDYKASLKYLSDHP 450 (450)
T ss_dssp TCEEEEEECCT-TCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcEEEEEEccC-CCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 6887764 7788999999999999999999998
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.14 E-value=6e-11 Score=98.63 Aligned_cols=99 Identities=8% Similarity=-0.029 Sum_probs=82.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCH--HHHHHHHhhcC--ceecCCCC-CCeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHI--YRLSSGLNKRG--WNTNSLQF-PVGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i--~~l~d~L~~rG--W~v~~~~~-P~~ihi~v~ 75 (143)
+||+++.++.++.|+++++.|++.|+|+++.+|.+++|||+..+.|- ..+.++|.++| |..++.-. -..+|++++
T Consensus 372 ~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~ 451 (476)
T d1js3a_ 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAIC 451 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeC
Confidence 49999999999999999999999999999999999999999764443 36778888888 43333211 236899999
Q ss_pred ecccChhHHHHHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
++++++++++.+++.|++..+++-
T Consensus 452 n~~Tt~~did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 452 SRKVESGHVRLAWEHIRGLAAELL 475 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999988774
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=98.60 E-value=1.4e-07 Score=70.50 Aligned_cols=88 Identities=15% Similarity=0.277 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC-CCeeeEEEEecccC
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF-PVGIHICITHMHTQ 80 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~-P~~ihi~v~~~h~~ 80 (143)
++.+........++++.+.+.+++|+++++.+..++|.|... .+++++|.++|+.++..+. +..+|+++++ +++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~----~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~-~~T 330 (345)
T d1v72a1 256 LWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----SAMIDALLKAGFGFYHDRWGPNVVRFVTSF-ATT 330 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----HHHHHHHHHTTCBCBCSSSSTTEEEEECCT-TCC
T ss_pred hhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC----HHHHHHHHHcCCCccccCCCCCEEEEECCC-CCC
Confidence 456677778889999999999999999998888999998765 3788999999999987654 4579998875 556
Q ss_pred hhHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREE 94 (143)
Q Consensus 81 ~~~~~~fl~Dl~~a 94 (143)
++.+|.||+.||++
T Consensus 331 ~edid~~le~lr~a 344 (345)
T d1v72a1 331 AEDVDHLLNQVRLA 344 (345)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999999875
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=98.55 E-value=1.7e-07 Score=73.43 Aligned_cols=89 Identities=11% Similarity=0.231 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCC-CCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDV-FHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQ 80 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~-~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~ 80 (143)
+.+.++..+.++++.++|++++|++++++ |..++|+|+.++ .+..++...|+++|+.+.....|..+|+++.. .++
T Consensus 287 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~-~nt 365 (381)
T d1elua_ 287 EERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHY-ITD 365 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCT-TCC
T ss_pred ccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecCCCCEEEEecCC-CCC
Confidence 34568888999999999999999999986 578899998653 56778999999999999888889999999864 446
Q ss_pred hhHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVRE 93 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ 93 (143)
.+.+|.|++.|++
T Consensus 366 ~edid~ll~~l~e 378 (381)
T d1elua_ 366 EEEINHLLARLAD 378 (381)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 7889999988875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.10 E-value=5.6e-06 Score=61.69 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecC--CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSD--VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVAD 85 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~--~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~ 85 (143)
+...+..+++.+.+.++++.........+.|.|..+ ..+-.+|.++|.++||.+.+.. ++.+|++++. +++++.+|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~~-~~~iRi~~~~-~~t~edid 329 (343)
T d1m6sa_ 252 KEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVS-DTEIRLVTHK-DVSRNDIE 329 (343)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEE-TTEEEEECCT-TSCHHHHH
T ss_pred HHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCCEEecCC-CCEEEEECCC-CCCHHHHH
Confidence 445667778888888887776666566778887654 4677899999999999987653 5679998874 66789999
Q ss_pred HHHHHHHHHHHHH
Q psy10208 86 KFISDVREELAII 98 (143)
Q Consensus 86 ~fl~Dl~~ai~~~ 98 (143)
.|++.|+++++++
T Consensus 330 ~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 330 EALNIFEKLFRKF 342 (343)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999876
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.96 E-value=6.3e-06 Score=67.98 Aligned_cols=97 Identities=14% Similarity=0.232 Sum_probs=76.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEec-CCCCHHHHHHHHhhcCceecCCCCC----CeeeEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQFP----VGIHICI 74 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~P----~~ihi~v 74 (143)
+|.+++++.+++.|+|++++|+. +|+++..+ |-+.=+.+.. .+++..+++++|.++|++-+....| .++=+|+
T Consensus 339 ~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~EFvv~~~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~v 417 (471)
T d1wyub1 339 EGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEP 417 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeEEeecCCCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEec
Confidence 58999999999999999999977 69998755 5555555554 4678889999999999976644334 3567889
Q ss_pred EecccChhHHHHHHHHHHHHHHHHH
Q psy10208 75 THMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 75 ~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
|-.|+ ++.+|.|++-|++++++.+
T Consensus 418 TE~~t-kedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 418 TETEA-KETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp CTTSC-HHHHHHHHHHHHHHHTSCH
T ss_pred CCCCC-HHHHHHHHHHHHHHHHhhH
Confidence 98776 5889999999999987543
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=97.91 E-value=3e-05 Score=63.31 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=73.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecCCCCHHHHHHHHhhcCceecCCCC----CCeeeEEEE
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF----PVGIHICIT 75 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~----P~~ihi~v~ 75 (143)
+|-+++++.++.+|+|++++|.+++|++++.+ |-+.-+.++. +.+..+++++|.++|++.+..-. +..+-+++|
T Consensus 340 ~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~-~~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~T 418 (437)
T d1wyua1 340 EGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALAL-PKDPEAVRRALAERGFHGATPVPREYGENLALFAAT 418 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEEC-SSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEEC-CCCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecC
Confidence 48899999999999999999999999998764 5555565554 34788999999999998655322 235667777
Q ss_pred ecccChhHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai 95 (143)
..++ .+.+|+|++-|++++
T Consensus 419 E~~t-keeiD~~v~al~eil 437 (437)
T d1wyua1 419 ELHE-EEDLLALREALKEVL 437 (437)
T ss_dssp TTCC-HHHHHHHHHHHHHHC
T ss_pred CCCC-HHHHHHHHHHHHHhC
Confidence 6554 689999999998863
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=0.00015 Score=57.30 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-CceeEEEEecCCCCHHHHHHHHhhcCceecCC-----------CCCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-PATSVIALGSDVFHIYRLSSGLNKRGWNTNSL-----------QFPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~-----------~~P~~ 69 (143)
|+.++.+.....++++.+.++.++...+.+. ...++|+|..+..+-.++...|.++|..++.. ..|..
T Consensus 297 g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~ 376 (405)
T d1jf9a_ 297 GLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAM 376 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCE
T ss_pred ChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCE
Confidence 6788889999999999999999988877765 46899999998888999999999999988642 33567
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+|+++.. ..+.+.++.|++-|+++.+-+
T Consensus 377 iRiS~~~-ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 377 CRASLAM-YNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp EEEECCT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHHHHhc
Confidence 9999875 445788999999998887643
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.77 E-value=0.00016 Score=57.05 Aligned_cols=96 Identities=11% Similarity=0.187 Sum_probs=79.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccC-----ceeEEEEecCCCCHHHHHHHHhhcCceecCC-----------C
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTP-----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSL-----------Q 65 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p-----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~-----------~ 65 (143)
|..++.+.+...++++.+++++++++++++.+ ..++|+|..++.+-.++...|.++|-.+++. .
T Consensus 296 g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~ 375 (408)
T d1t3ia_ 296 GMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFD 375 (408)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTT
T ss_pred CHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHhhc
Confidence 55667788888999999999999999999742 3689999988899999999999999877642 2
Q ss_pred CCCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 66 FPVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 66 ~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.+..+|+++.. ..+.+.+|.|++-|+++++.+
T Consensus 376 ~~g~vRiS~~~-ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 376 ASGSARASLYF-YNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp CCCCEEEECCT-TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCccEEEECCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 35679999874 446899999999999998754
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00011 Score=58.64 Aligned_cols=92 Identities=14% Similarity=0.264 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHHHhhcCceecCCCCCC------eeeEEEEe
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQFPV------GIHICITH 76 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~P~------~ihi~v~~ 76 (143)
.+..+++.+..+++.+++.+. |+.+.+. ..|||.+.. +......++++|.++|+.+++...|. .+|++++.
T Consensus 299 ~~~~~~l~~~~~~~~~~l~~~-g~~~~~~-~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a 376 (401)
T d1fc4a_ 299 SELRDRLWANARQFREQMSAA-GFTLAGA-DHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSA 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBCCS-SSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHhhhccc-CCccCCC-CCCEEEEEECCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECC
Confidence 456678899999999999998 7776543 345544322 33345689999999999988765542 28999988
Q ss_pred cccChhHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.|+ ++.+|.+++-|+++.+++
T Consensus 377 ~hT-~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 377 AHT-PEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TCC-HHHHHHHHHHHHHHHHHT
T ss_pred CCC-HHHHHHHHHHHHHHHHHh
Confidence 776 689999999999987764
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=97.54 E-value=1.8e-05 Score=57.67 Aligned_cols=86 Identities=9% Similarity=0.096 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCC---CCeeeEEEEecc
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQF---PVGIHICITHMH 78 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~---P~~ihi~v~~~h 78 (143)
++.+..++....++++.++++++ |++++..++.++|.+..++ +++++|.++|........ +..+|+++.. .
T Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~-~ 324 (340)
T d1svva_ 251 LFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILEN----TMIAELNNDFDMYTVEPLKDGTCIMRLCTSW-A 324 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEEH----HHHHHHTTTEECEEEEEETTTEEEEEEECCT-T
T ss_pred HHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCCH----HHHHHHHHhhhhhcccccCCCCcEEEEECCC-C
Confidence 57788889999999999999997 9999888888888776543 567777777654333222 4468998764 5
Q ss_pred cChhHHHHHHHHHHH
Q psy10208 79 TQPGVADKFISDVRE 93 (143)
Q Consensus 79 ~~~~~~~~fl~Dl~~ 93 (143)
++++.+|+|++.||+
T Consensus 325 ~t~edid~~l~~l~~ 339 (340)
T d1svva_ 325 TEEKECHRFVEVLKR 339 (340)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 568999999999986
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=97.26 E-value=0.0012 Score=50.88 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEecc--C--ceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGT--P--ATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~--p--~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
+.+.+....+.+.+...+|+++++. | ..++|+|...+ -.++...|.++|=... ...|..+|+++.+...+.+.
T Consensus 310 ~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~--~~~v~~~L~~~gi~~~-~r~~~~lRiS~~h~ynt~~d 386 (404)
T d1qz9a_ 310 LALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--GYAVIQALIDRGVIGD-YREPRIMRFGFTPLYTTFTE 386 (404)
T ss_dssp HHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--HHHHHHHHHTTTEECE-EETTTEEEEECCTTTCCHHH
T ss_pred HHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC--HHHHHHHHHHCCCEEe-ecCCCeEEEECCCCCCCHHH
Confidence 3344444556666777899999974 2 36899998764 6789999999986442 23477899988654356789
Q ss_pred HHHHHHHHHHHHHH
Q psy10208 84 ADKFISDVREELAI 97 (143)
Q Consensus 84 ~~~fl~Dl~~ai~~ 97 (143)
+++|++-|+++++.
T Consensus 387 id~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 387 VWDAVQILGEILDR 400 (404)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.01 E-value=0.0013 Score=51.63 Aligned_cols=91 Identities=8% Similarity=0.016 Sum_probs=66.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhC---CCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceec---CCC---------
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSM---DGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTN---SLQ--------- 65 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i---~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~---~~~--------- 65 (143)
+||.++.++..+.+++++++|+++ .|++++..|....+++.. ..|...+...|.++|.... ...
T Consensus 326 ~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~-~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~ 404 (434)
T d2z67a1 326 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISV-NSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLG 404 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEEC-SSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSS
T ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeec-CCCHHHHHHHHHHcCCeeeehhhhccccCeeeec
Confidence 478999999999999999999875 478888777665666654 4578899999999986331 111
Q ss_pred --CCCeeeEEEEecccChhHHHHHHHHHHH
Q psy10208 66 --FPVGIHICITHMHTQPGVADKFISDVRE 93 (143)
Q Consensus 66 --~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ 93 (143)
....++++++.. .+++.+|.|++.|++
T Consensus 405 ~~~~~~l~~~~s~~-~T~edID~~i~~L~k 433 (434)
T d2z67a1 405 TYTHDYIVMNAAIG-VRTEDIVNSVSKLEK 433 (434)
T ss_dssp CCSCCEEEEECCTT-CCHHHHHHHHHHHHT
T ss_pred ccCCCeEEEecCCC-CCHHHHHHHHHHHhc
Confidence 123466666543 357889999999875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.0011 Score=52.19 Aligned_cols=86 Identities=10% Similarity=0.196 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEecc--CceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCC------eeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGT--PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPV------GIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~--p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~------~ihi~v~ 75 (143)
.+..++..++..++.+++.++ |+.+.+. |.+||+.- +......+++.|.++|..+++-..|. -+|++++
T Consensus 288 ~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~s~Ii~v~~g--~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~ 364 (383)
T d1bs0a_ 288 DARREKLAALITRFRAGVQDL-PFTLADSCSAIQPLIVG--DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLT 364 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-SCEECSCCSSBCCEEEE--SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCEEEEEEC--CHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeC
Confidence 456677888999999999998 7887654 34555432 23345689999999999987654432 3899999
Q ss_pred ecccChhHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVRE 93 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ 93 (143)
..|+ ++.+|.+++=|+.
T Consensus 365 a~ht-~edid~l~~~L~~ 381 (383)
T d1bs0a_ 365 AAHE-MQDIDRLLEVLHG 381 (383)
T ss_dssp TTCC-HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHh
Confidence 8776 6788888876654
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.80 E-value=0.0011 Score=52.83 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec-CCCCHHHHHHH-HhhcCceecCCCCC---C---eeeEEEEe
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS-DVFHIYRLSSG-LNKRGWNTNSLQFP---V---GIHICITH 76 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~-~~~~i~~l~d~-L~~rGW~v~~~~~P---~---~ihi~v~~ 76 (143)
+.-++...+++++.+++.++ |+.+.+ ...||+.+.. ++.....++++ |+++|+.+++-..| . .+|++++.
T Consensus 301 ~~r~~l~~~~~~~~~~l~~~-g~~~~~-~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa 378 (396)
T d2bwna1 301 KLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSP 378 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcCC-CCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCc
Confidence 34456677899999999997 787764 3455665543 22345678887 56899999886554 2 38999998
Q ss_pred cccChhHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREE 94 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~a 94 (143)
.|+ .+.+|.|++-|++.
T Consensus 379 ~ht-~edId~l~~~L~~i 395 (396)
T d2bwna1 379 VHD-LKQIDGLVHAMDLL 395 (396)
T ss_dssp TSC-HHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHh
Confidence 776 57888888877753
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.0037 Score=47.87 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEe-ccCc---eeEEEEec-CCCCHHHHHHHHhhc-CceecCCC---CCCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIF-GTPA---TSVIALGS-DVFHIYRLSSGLNKR-GWNTNSLQ---FPVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vl-g~p~---l~vVaf~~-~~~~i~~l~d~L~~r-GW~v~~~~---~P~~ihi 72 (143)
|-.++.++..+.+.++.++++++ |+.++ .+|. -.+++|.. +++|..++...|.++ |=.+..-. ....+||
T Consensus 280 g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRi 358 (388)
T d1h0ca_ 280 GLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRI 358 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEE
T ss_pred ccccccccccchhHHHHHHHhhc-CcccccCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEE
Confidence 45667778888899999999998 55554 4542 24788887 568889999998665 76555432 2446898
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
..+....+.+.+|.|++=|+++++++++.
T Consensus 359 s~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 359 GLLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp ECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 74433456789999999999999988753
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.64 E-value=0.0056 Score=46.14 Aligned_cols=90 Identities=9% Similarity=0.117 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEecC---CCCHHHHHHHHhhcCceecCC--CCCCeeeEEEE
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGSD---VFHIYRLSSGLNKRGWNTNSL--QFPVGIHICIT 75 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~~---~~~i~~l~d~L~~rGW~v~~~--~~P~~ihi~v~ 75 (143)
....++..+.++.+.+.++.. |+.+..++. -.+++|... ..+..++...|.++|..+.+. ..+..+||+.+
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~ 339 (361)
T d1m32a_ 261 AARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNI 339 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECC
T ss_pred hhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCC
Confidence 455577888899999999987 677776653 346788763 467789999999999887653 23566899865
Q ss_pred ecccChhHHHHHHHHHHHHH
Q psy10208 76 HMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 76 ~~h~~~~~~~~fl~Dl~~ai 95 (143)
. +++.+.+++|++=|++++
T Consensus 340 g-~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 340 G-EVYAADITALLTAIRTAM 358 (361)
T ss_dssp S-SCCHHHHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHHHc
Confidence 4 567788999999888874
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.45 E-value=0.0029 Score=49.61 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=69.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhCC---CeeEeccCceeE---EEEec----CCCCHHHHHHHHhhcCcee---------
Q psy10208 1 MSYVNTTRSIIETVKYIEKELRSMD---GLFIFGTPATSV---IALGS----DVFHIYRLSSGLNKRGWNT--------- 61 (143)
Q Consensus 1 ~GY~~i~~~~~~~a~~l~~~i~~i~---g~~vlg~p~l~v---Vaf~~----~~~~i~~l~d~L~~rGW~v--------- 61 (143)
+||.+..++..++++++.++|+++. |.+++..|..+. +.+.. ...+...+...|.++|+.-
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~ 389 (445)
T d3bc8a1 310 SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV 389 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccc
Confidence 3788999999999999999998753 677776655433 23321 2467778888998887521
Q ss_pred --------cCCC-----CC-CeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 62 --------NSLQ-----FP-VGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 62 --------~~~~-----~P-~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
..+. .+ +.+++.++. .++++.+|.|++.|+++++.+++.
T Consensus 390 ~~i~~~~~~~~g~~~~~~~~~~i~i~~~~-~~T~eDID~~v~~L~kilk~~rk~ 442 (445)
T d3bc8a1 390 QTVSGHTFRGFMSHADNYPCAYLNAAAAI-GMKMQDVDLFIKRLDKCLNIVRKE 442 (445)
T ss_dssp EEETTEEEETTTTTSSCCSSCEEEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcCCCCccCCCCeEEEeCcC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 11 225565553 456789999999999999999864
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=96.23 E-value=0.015 Score=43.91 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEec-CCCCHHHHHHHHh-hcCceecCCC---CCCeeeEE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGS-DVFHIYRLSSGLN-KRGWNTNSLQ---FPVGIHIC 73 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~-~~~~i~~l~d~L~-~rGW~v~~~~---~P~~ihi~ 73 (143)
|.....++..+.++++.+.+.+. ++.++++|. -.+++|.. ++++-.++...|. ++|-.+..-. .+..+||.
T Consensus 276 g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris 354 (377)
T d1vjoa_ 276 GLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVG 354 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEE
T ss_pred CchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcccccCCEEEEe
Confidence 55667777788899999999986 777776642 34677877 5688999999885 4587765432 24568987
Q ss_pred EEecccChhHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREEL 95 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai 95 (143)
.+....+.+.+++|++-|++++
T Consensus 355 ~~g~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 355 LMGFNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHHHHHh
Confidence 6544556788999999998875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.021 Score=43.65 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecCCCCHHHHHHHHhhcCceecC-----CC----------C
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSDVFHIYRLSSGLNKRGWNTNS-----LQ----------F 66 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~-----~~----------~ 66 (143)
+..+++.+.+.++.++|.++++..+.... ...+++|.....+-.++...|.+-|..... .. .
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~ 343 (391)
T d1p3wa_ 264 TEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGL 343 (391)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEECBCCCC------CCCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCCChHHHHHHhCCCEEEccccccCCccchhHHHHHcCC
Confidence 34556667788899999999887765432 235677877778888888888754432110 00 1
Q ss_pred -----CCeeeEEEEecccChhHHHHHHHHHHHHHHHHHcC
Q psy10208 67 -----PVGIHICITHMHTQPGVADKFISDVREELAIIMQN 101 (143)
Q Consensus 67 -----P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~~ 101 (143)
+..+|+++.. ..+.+.++.|++-|+++++.+++.
T Consensus 344 ~~~~~~g~iRiS~~~-~nt~edid~l~~~l~~~l~~lr~~ 382 (391)
T d1p3wa_ 344 NDELAHSSIRFSLGR-FTTEEEIDYTIELVRKSIGRLRDL 382 (391)
T ss_dssp CHHHHHTEEEEECCT-TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccccCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 1358998865 445789999999999999999986
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=95.64 E-value=0.032 Score=42.86 Aligned_cols=82 Identities=17% Similarity=0.034 Sum_probs=60.5
Q ss_pred HHHHHHHhhCCCeeEeccC-ceeEEEEec-CCCCHHHHHHHHhhcCceecCCCCCC---eeeEEEEecccChhHHHHHHH
Q psy10208 15 KYIEKELRSMDGLFIFGTP-ATSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQFPV---GIHICITHMHTQPGVADKFIS 89 (143)
Q Consensus 15 ~~l~~~i~~i~g~~vlg~p-~l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~P~---~ihi~v~~~h~~~~~~~~fl~ 89 (143)
..+++.++.. |+++..+- .-.|++|.. +++|..++.+.|+++|-.+..-+.|- .+||..|. +.+.+.++.+++
T Consensus 261 ~~~~~~~~~~-gl~~~~~~~s~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG-~~~~~d~~~~~~ 338 (348)
T d1iuga_ 261 ALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMG-AYDRYEALGVAG 338 (348)
T ss_dssp HHHHHHHHHT-TCEESCSSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCS-SCCHHHHHHHHH
T ss_pred HHHhhhhhhh-hhccChhhcCCeEEEEECCCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCC-CCCHHHHHHHHH
Confidence 3444444554 88887652 223688987 47899999999999998776655442 48998764 667788999999
Q ss_pred HHHHHHHHH
Q psy10208 90 DVREELAII 98 (143)
Q Consensus 90 Dl~~ai~~~ 98 (143)
-|+++++++
T Consensus 339 ~l~~~l~~~ 347 (348)
T d1iuga_ 339 MFREVLEEI 347 (348)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.17 E-value=0.053 Score=43.24 Aligned_cols=97 Identities=12% Similarity=0.236 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---------~P~~ 69 (143)
.|++-+++++++|+.|++.|.+. ||.+++ +.++-+|-.+..+.+-....+.|++-|-.++.-. .|.+
T Consensus 277 ~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SG 355 (405)
T d1kl1a_ 277 DFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSG 355 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCc
Confidence 47889999999999999999997 999995 3455555566667888888889999999887432 2567
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
+||-.. ..|++++-+.=...|.+.+..+-.
T Consensus 356 iRiGT~-a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 356 IRIGTA-AVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp EEEECH-HHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred eeecCH-HHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999654 455555544333444444443333
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=95.14 E-value=0.027 Score=42.46 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhH
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGV 83 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~ 83 (143)
.+..+...+.+++|.+.|+++ |+++. .|+.+-+-+..+..|..++.+.|.++|..+. .++..+|+++.. .+-
T Consensus 252 ~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~~~~~~~~~~~~~L~~~GI~vr--~~~~~vRis~g~----~ee 323 (334)
T d2f8ja1 252 EERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKEEKERLLEHLRTKNVAVR--SFREGVRITIGK----REE 323 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCEEC-CCCSSEEEEECCHHHHHHHHHHHHHTTEECE--EETTEEEEECCC----HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECCCCCHHHHHHHHHHCCCEEC--CCCCeEEEEcCC----HHH
Confidence 344566777788999999998 88875 4565544444444577889999999998874 356789998852 234
Q ss_pred HHHHHHHHH
Q psy10208 84 ADKFISDVR 92 (143)
Q Consensus 84 ~~~fl~Dl~ 92 (143)
.++|++-|+
T Consensus 324 ~~~l~~~l~ 332 (334)
T d2f8ja1 324 NDMILRELE 332 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566666554
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=94.90 E-value=0.085 Score=39.78 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC---------------
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------------- 65 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------------- 65 (143)
............++.++|..+... ++++ ....+++|+....+-..+...|.++|..+.+-.
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~ 337 (376)
T d1eg5a_ 259 SEAAKHMEKLRSKLVSGLMNLGAH-IITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDA 337 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCE-ECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHH
T ss_pred hhhhhhhhhhhhhhcccccccccc-ccccccccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHH
Confidence 445556666788899999887444 4433 356788899888888999999999998775321
Q ss_pred --C-----CCeeeEEEEecccChhHHHHHHHHHHHHHHH
Q psy10208 66 --F-----PVGIHICITHMHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 66 --~-----P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
. +..+|+++.. ..+.+.+|.|++-|+++++.
T Consensus 338 ~gi~~~~~~~~iRiS~~~-ynt~edid~l~~~L~~iv~~ 375 (376)
T d1eg5a_ 338 MGVDRRIAQGAIRISLCK-YNTEEEVDYFLKKIEEILSF 375 (376)
T ss_dssp TTCCHHHHHHEEEEECCT-TCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCCCEEEEecCC-CCCHHHHHHHHHHHHHHHhh
Confidence 1 1247887652 34678999999999999874
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.13 Score=37.83 Aligned_cols=90 Identities=6% Similarity=-0.128 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccC---ceeEEEEecC-CCCHHHHHHHHhhcCceecCC-CCCCeeeEEEEec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTP---ATSVIALGSD-VFHIYRLSSGLNKRGWNTNSL-QFPVGIHICITHM 77 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p---~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~~-~~P~~ihi~v~~~ 77 (143)
....-++....++.+.+.+....+.....++ ...++||... +.+.-++.+.|+++|-.+... .+-.++|+.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~- 338 (360)
T d1bjna_ 260 VAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYN- 338 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCT-
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecC-
Confidence 3445555666677777777777555544443 3468999874 577788999999999766443 333469999875
Q ss_pred ccChhHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVRE 93 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ 93 (143)
.++.+.++.|++=|++
T Consensus 339 ~~t~edV~~li~~l~e 354 (360)
T d1bjna_ 339 AMPLEGVKALTDFMVE 354 (360)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4457888888887776
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=94.63 E-value=0.077 Score=39.84 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCC-----CCCeeeEEEEec
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ-----FPVGIHICITHM 77 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~-----~P~~ihi~v~~~ 77 (143)
+.+..+++.+..+++.+.+.+++|+++. .+..+-+-+..+. +-.++.++|.++|..+-... .+..+||++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~-~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~-- 339 (355)
T d1lc5a_ 264 QQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER-EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-- 339 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC-TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC--
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC-CHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC--
Confidence 4566777888889999999999999864 3344434344432 33467889999999884321 2456888873
Q ss_pred ccChhHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREE 94 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~a 94 (143)
+++..++|++-|++.
T Consensus 340 --~~~e~~~li~aL~~i 354 (355)
T d1lc5a_ 340 --SAAQNERLLAALRNV 354 (355)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHh
Confidence 246678888887765
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=94.47 E-value=0.16 Score=39.52 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecccChhHHHHHHHHHHHHHHHHHc
Q psy10208 44 VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMHTQPGVADKFISDVREELAIIMQ 100 (143)
Q Consensus 44 ~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~~ 100 (143)
++.-+.+++.|+++|.++... ....+++++++.+ +++.+|.+++-|++......+
T Consensus 407 G~~~~~~~~~L~~~gI~~e~~-~~~~i~~~~s~~~-T~edid~li~aL~ei~r~~~~ 461 (462)
T d1c4ka2 407 GVPATIVANYLRDHGIIPEKS-DLNSILFLMTPAE-TPAKMNNLITQLLQLQRLIEE 461 (462)
T ss_dssp CCCHHHHHHHHHHTTCCCSEE-CSSEEEEECCTTC-CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHcCCeeecc-CCCeEEEEecCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999766532 3556888888654 578999999999888766554
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=94.37 E-value=0.12 Score=38.76 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc---eeEEEEec-CCCCHHHHHHHHhh-cCceecCCCC---CCeeeEEEEe
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA---TSVIALGS-DVFHIYRLSSGLNK-RGWNTNSLQF---PVGIHICITH 76 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~---l~vVaf~~-~~~~i~~l~d~L~~-rGW~v~~~~~---P~~ihi~v~~ 76 (143)
+..++.......+...+........+.+|. -.+++|.. +++|..++...|.+ +|-.+..-.. ...+||..+-
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g 360 (388)
T d2ch1a1 281 NQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMG 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCG
T ss_pred HHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCc
Confidence 344444555566666666664444445552 24788987 57888999988865 5887765432 2357998553
Q ss_pred cccChhHHHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
...+.+.++.|++=|+++++...
T Consensus 361 ~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 361 ECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhC
Confidence 23357899999999999988743
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.12 Score=41.20 Aligned_cols=81 Identities=11% Similarity=0.138 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCCC---------CCCe
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ---------FPVG 69 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~---------~P~~ 69 (143)
.|++-+++++++|+.|++.|.+. ||+++. |.++-+|-++..+++-......|++-|-.++.-+ .|.+
T Consensus 282 ~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SG 360 (416)
T d1dfoa_ 282 EFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSG 360 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCc
Confidence 47899999999999999999997 999994 3456566666667788899999999999886532 2567
Q ss_pred eeEEEEecccChhHH
Q psy10208 70 IHICITHMHTQPGVA 84 (143)
Q Consensus 70 ihi~v~~~h~~~~~~ 84 (143)
+||-.. ..|++++-
T Consensus 361 iRiGT~-a~TtrG~~ 374 (416)
T d1dfoa_ 361 IRVGTP-AITRRGFK 374 (416)
T ss_dssp EEEECH-HHHHTTCC
T ss_pred eEeCCH-HHHhCCCC
Confidence 999654 45555543
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.37 Score=35.98 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCC----CCCCeeeEEEEecccC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL----QFPVGIHICITHMHTQ 80 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~----~~P~~ihi~v~~~h~~ 80 (143)
+..+++.+..+++.+++.+++++..+.++..+-+-+..+ |--++.+.|.++|..+-.. ..|..+|+++..
T Consensus 265 ~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~--~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisigt---- 338 (354)
T d1fg7a_ 265 ERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGT---- 338 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--THHHHHHHHHHTTEECEECTTSTTCTTEEEEECCC----
T ss_pred ccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC--CHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEeCC----
Confidence 344567788889999999998887666666555555544 4568899999999987432 346678988742
Q ss_pred hhHHHHHHHHHH
Q psy10208 81 PGVADKFISDVR 92 (143)
Q Consensus 81 ~~~~~~fl~Dl~ 92 (143)
++-.++|++=||
T Consensus 339 ~ee~~~~l~aLk 350 (354)
T d1fg7a_ 339 REESQRVIDALR 350 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 345566666554
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=94.01 E-value=0.12 Score=41.74 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc---CceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCee
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT---PATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGI 70 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~---p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~i 70 (143)
.|++-+++++++|+.|++.|.+. ||++++. .++-+|-.++...+-....+.|++-|-.++.-. .|.++
T Consensus 305 ~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGi 383 (463)
T d2a7va1 305 MFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGL 383 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCce
Confidence 37889999999999999999997 9999953 466666666667788889999999998776532 35678
Q ss_pred eEEEEecccC
Q psy10208 71 HICITHMHTQ 80 (143)
Q Consensus 71 hi~v~~~h~~ 80 (143)
||-.. ..|+
T Consensus 384 RiGT~-a~Tt 392 (463)
T d2a7va1 384 RLGAP-ALTS 392 (463)
T ss_dssp EEESH-HHHH
T ss_pred EeCCH-HHHh
Confidence 98654 3443
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.50 E-value=0.53 Score=37.88 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEec---cCceeEEEEecCCCCHHHHHHHHhhcCceecCCC--------CCCeee
Q psy10208 3 YVNTTRSIIETVKYIEKELRSMDGLFIFG---TPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQ--------FPVGIH 71 (143)
Q Consensus 3 Y~~i~~~~~~~a~~l~~~i~~i~g~~vlg---~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~--------~P~~ih 71 (143)
|++-+++++++|+.|++.|.+. ||+++. +.++-+|-.+..+++-....+.|++-|=.++.-. .|.++|
T Consensus 310 fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiR 388 (470)
T d1rv3a_ 310 FKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLR 388 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeE
Confidence 7889999999999999999997 999984 3566677666667888889999999997776432 256789
Q ss_pred EEEEecccCh----hHHHHHHHHHHHHHH
Q psy10208 72 ICITHMHTQP----GVADKFISDVREELA 96 (143)
Q Consensus 72 i~v~~~h~~~----~~~~~fl~Dl~~ai~ 96 (143)
|-.. ..|++ +.+.+..+-+.++++
T Consensus 389 iGT~-alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 389 LGTP-ALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp EECH-HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCH-HHHhCCCCHHHHHHHHHHHHHHHH
Confidence 8653 34433 334444444444443
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=93.19 E-value=0.34 Score=36.22 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCC-------CCCCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSL-------QFPVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~-------~~P~~ihi~v~~~ 77 (143)
++.+...+..+++.+.|+++ |+++........+-+..++.+.+++ |+++|..+... ..+..+|+++..
T Consensus 278 ~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~~~~~~~l---l~~~gI~v~pg~~F~~~~~~~~~iRis~~~- 352 (368)
T d1v2da_ 278 ALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGWDAFRL---VEEARVALIPASAFYLEDPPKDLFRFAFCK- 352 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTCCHHHH---HHHTCEECEEGGGGCSSSCCTTEEEEECCS-
T ss_pred HHHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCCccHHHHH---HHhCCEEEEechhhCCCCCCCCEEEEEecC-
Confidence 34444567778899999998 8887654434445455667776654 77899888532 123458888752
Q ss_pred ccChhHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREE 94 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~a 94 (143)
+++.++++++-|+++
T Consensus 353 --~~e~i~~ai~rL~~~ 367 (368)
T d1v2da_ 353 --TEEELHLALERLGRV 367 (368)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHh
Confidence 345666666666554
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=92.46 E-value=0.98 Score=34.70 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=54.3
Q ss_pred HHHHHHHhhCCCe-eEeccCceeEEEEecCCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecc-cChhHHHHHHHHHH
Q psy10208 15 KYIEKELRSMDGL-FIFGTPATSVIALGSDVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMH-TQPGVADKFISDVR 92 (143)
Q Consensus 15 ~~l~~~i~~i~g~-~vlg~p~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h-~~~~~~~~fl~Dl~ 92 (143)
+.+.+.+++.+.+ ++-|..-+.-+-|.++..+..++..+|.++|-.+.... +..+ .+.|+. ++++.++++++-|+
T Consensus 321 ~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~-~~~i--r~~Ppl~it~~~id~~~~~l~ 397 (404)
T d1z7da1 321 ENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVH-DKTI--RLTPPLCITKEQLDECTEIIV 397 (404)
T ss_dssp HHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEET-TTEE--EECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCC-CCEE--EEECCcCCCHHHHHHHHHHHH
Confidence 3344445555444 23355556666777777888999999999997663322 2334 445543 46899999999999
Q ss_pred HHHHHH
Q psy10208 93 EELAII 98 (143)
Q Consensus 93 ~ai~~~ 98 (143)
++++++
T Consensus 398 ~alk~~ 403 (404)
T d1z7da1 398 KTVKFF 403 (404)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999876
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.21 Score=37.51 Aligned_cols=96 Identities=11% Similarity=-0.073 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhCCCeeEecc-C----ceeEEEEecCCCCHHHHHHHHhhcCceecCC-CC---CCeeeE
Q psy10208 2 SYVNTTRSIIETVKYIEKELRSMDGLFIFGT-P----ATSVIALGSDVFHIYRLSSGLNKRGWNTNSL-QF---PVGIHI 72 (143)
Q Consensus 2 GY~~i~~~~~~~a~~l~~~i~~i~g~~vlg~-p----~l~vVaf~~~~~~i~~l~d~L~~rGW~v~~~-~~---P~~ihi 72 (143)
|-.++.++..+.++++.+++....++..+.. | ...+++|... +-.++...|+++|=.+..- +. +..+||
T Consensus 276 g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~--~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri 353 (382)
T d2bkwa1 276 GLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA--DPPDVIAFLKSHGVVIAGGIHKDIGPKYIRI 353 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS--CHHHHHHHHHHTTEECBCCCCTTTGGGEEEE
T ss_pred hhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCC--CHHHHHHHHHHCCeEEECCCChhhcCCEEEE
Confidence 4455666667788999999988777777652 2 2356778765 4678899999999888764 22 344788
Q ss_pred EEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 73 CITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 73 ~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
..+-..++.+.++.+++-|....+.|+
T Consensus 354 ~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 354 GHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp CCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 743223334555555555554444443
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=91.66 E-value=1.3 Score=33.02 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-eeEEEEecCCCCHHHHHHHHhhc-C-------------ceecCCCCCCe
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-TSVIALGSDVFHIYRLSSGLNKR-G-------------WNTNSLQFPVG 69 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-l~vVaf~~~~~~i~~l~d~L~~r-G-------------W~v~~~~~P~~ 69 (143)
+..+...+..+.+.+.|+++++.. ...|+ ..-+-++.+..|-.+++++|-+. + +.+.....+..
T Consensus 283 ~~~~~~~~~~~~~~~~L~~~~~~~-~~~p~~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~ 361 (389)
T d2gb3a1 283 FVRETYRERVETVLKKLEEHGLKR-FTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKE 361 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-BCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSE
T ss_pred cccccccccchhhhhhhhhhcccc-ccCCCceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCE
Confidence 344555667788999999995443 44454 33444455555777888877442 2 11111112345
Q ss_pred eeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 70 IHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 70 ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+||++. ...+.+++-++.|+++++..
T Consensus 362 iRis~~---~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 362 IRIACV---LEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp EEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEc---CCHHHHHHHHHHHHHHHHHh
Confidence 888875 24577788888888888764
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.63 E-value=0.97 Score=33.00 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEecc-Cc-eeEEEEecC---------CCCHHHHHHHHhhcCceecCCCCCCeeeEEEEe
Q psy10208 8 RSIIETVKYIEKELRSMDGLFIFGT-PA-TSVIALGSD---------VFHIYRLSSGLNKRGWNTNSLQFPVGIHICITH 76 (143)
Q Consensus 8 ~~~~~~a~~l~~~i~~i~g~~vlg~-p~-l~vVaf~~~---------~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~ 76 (143)
++.++.++++.++++++ |+.++++ |. .+++.+... ....+.+.+.|.++|++..........++. .
T Consensus 265 ~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~--~ 341 (364)
T d2e7ja1 265 DEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS--T 341 (364)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE--C
T ss_pred HHHHHHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEe--c
Confidence 34567889999999999 7888876 43 233333221 111223445566666654332223333332 2
Q ss_pred cccChhHHHHHHHHHHHHHHH
Q psy10208 77 MHTQPGVADKFISDVREELAI 97 (143)
Q Consensus 77 ~h~~~~~~~~fl~Dl~~ai~~ 97 (143)
...+.+.++.+++-|++++++
T Consensus 342 ~~~t~edid~~~~~l~ei~~~ 362 (364)
T d2e7ja1 342 YGLSDEEVDYVLNAFKEIIEK 362 (364)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 344678899999999998764
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=90.03 E-value=0.92 Score=34.42 Aligned_cols=82 Identities=7% Similarity=0.011 Sum_probs=52.8
Q ss_pred HHHHHHhhCCCeeEeccCceeEEEE-ec-CCCCHHHHHHHHhhcCceecCC------C-CCCeeeEEEEecccChhHHHH
Q psy10208 16 YIEKELRSMDGLFIFGTPATSVIAL-GS-DVFHIYRLSSGLNKRGWNTNSL------Q-FPVGIHICITHMHTQPGVADK 86 (143)
Q Consensus 16 ~l~~~i~~i~g~~vlg~p~l~vVaf-~~-~~~~i~~l~d~L~~rGW~v~~~------~-~P~~ihi~v~~~h~~~~~~~~ 86 (143)
.|.+.+.+++|+++. .|+-..+.| .. +.+|..++.+.|.+.|..+... . .+..+|+++.. .+.+.+++
T Consensus 325 ~L~~~~~~~~g~~~~-~p~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~--~~~e~l~~ 401 (420)
T d1vp4a_ 325 ALEEYFSDIPGVKWV-KSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL--PPDEKIVE 401 (420)
T ss_dssp HHHHHSTTSTTCEEC-CCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS--SCHHHHHH
T ss_pred hhhhhhccCCCcEEe-cCCceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCc--CCHHHHHH
Confidence 344444567888875 454433443 33 3567777888999999877432 1 13468888752 33467788
Q ss_pred HHHHHHHHHHHHHc
Q psy10208 87 FISDVREELAIIMQ 100 (143)
Q Consensus 87 fl~Dl~~ai~~~~~ 100 (143)
-++-|++++++..+
T Consensus 402 a~~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 402 GIKRLREVVLEYGK 415 (420)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH
Confidence 88888888877654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=86.76 E-value=2 Score=31.27 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhCCCeeEe-ccC---ceeEEEEecC-CCCHHHHHHHHhhcCcee-cCCCCCCeeeEEEEecccChhHHHH
Q psy10208 13 TVKYIEKELRSMDGLFIF-GTP---ATSVIALGSD-VFHIYRLSSGLNKRGWNT-NSLQFPVGIHICITHMHTQPGVADK 86 (143)
Q Consensus 13 ~a~~l~~~i~~i~g~~vl-g~p---~l~vVaf~~~-~~~i~~l~d~L~~rGW~v-~~~~~P~~ihi~v~~~h~~~~~~~~ 86 (143)
.+............+..+ .+| .-.+++|..+ +.+..++.+.|.++|... +.+.+-.++|+.+-+ ..+.+-+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~-~~t~e~V~~ 348 (360)
T d1w23a_ 270 KAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYN-AVPIDACIA 348 (360)
T ss_dssp HHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCT-TSCHHHHHH
T ss_pred HHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeC-CCCHHHHHH
Confidence 334444444444444443 333 2348999774 455578889999999987 444444579999754 445677887
Q ss_pred HHHHHHH
Q psy10208 87 FISDVRE 93 (143)
Q Consensus 87 fl~Dl~~ 93 (143)
+++=+++
T Consensus 349 Li~~~~~ 355 (360)
T d1w23a_ 349 LRELMIQ 355 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=86.27 E-value=2.3 Score=31.19 Aligned_cols=84 Identities=7% Similarity=0.023 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhCCCeeE-eccC---ceeEEEEecC-CCCHHHHHHHHhhcCceecC-CCCCCeeeEEEEecccChh
Q psy10208 9 SIIETVKYIEKELRSMDGLFI-FGTP---ATSVIALGSD-VFHIYRLSSGLNKRGWNTNS-LQFPVGIHICITHMHTQPG 82 (143)
Q Consensus 9 ~~~~~a~~l~~~i~~i~g~~v-lg~p---~l~vVaf~~~-~~~i~~l~d~L~~rGW~v~~-~~~P~~ihi~v~~~h~~~~ 82 (143)
+.-..+..+.........+.. ..++ .-.+++|... +.+..++.+.|+++|-.+.. +.+-.++||.+++ .++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~-~~~~e 344 (361)
T d2c0ra1 266 ANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYN-AVPYE 344 (361)
T ss_dssp HHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCT-TSCHH
T ss_pred HHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecC-CCCHH
Confidence 333444445555554433333 3332 2456778764 46667899999999976644 4433469999986 44678
Q ss_pred HHHHHHHHHHH
Q psy10208 83 VADKFISDVRE 93 (143)
Q Consensus 83 ~~~~fl~Dl~~ 93 (143)
.++.|++=|++
T Consensus 345 dv~~Lv~~l~~ 355 (361)
T d2c0ra1 345 SCEALVQFMEH 355 (361)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887776665
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=85.46 E-value=0.69 Score=36.09 Aligned_cols=89 Identities=8% Similarity=0.056 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCc--eeEEEEec-CCCCHHHHHHHHhhcCceecCCCCCCeeeEEEEecc-cCh
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPA--TSVIALGS-DVFHIYRLSSGLNKRGWNTNSLQFPVGIHICITHMH-TQP 81 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~--l~vVaf~~-~~~~i~~l~d~L~~rGW~v~~~~~P~~ihi~v~~~h-~~~ 81 (143)
+..++-+..++|.++|+++-....+++.. -.+.+|.. .+.+...+...+.++|-.+.. .+-.+.++|+. +++
T Consensus 332 ~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~----~g~~i~~~Ppl~it~ 407 (429)
T d1s0aa_ 332 WQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRP----FGKLIYLMPPYIILP 407 (429)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCC----BTTEEEECCCTTCCH
T ss_pred ccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecCcccHHHHHHHHHHCCcEEEe----cCCEEEEeCCcCCCH
Confidence 44556667788888887653323333321 12344443 345778999999999966533 22245566654 468
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy10208 82 GVADKFISDVREELAII 98 (143)
Q Consensus 82 ~~~~~fl~Dl~~ai~~~ 98 (143)
+.+|+.++-|+++++++
T Consensus 408 ~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 408 QQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88999999999887654
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=85.15 E-value=1.1 Score=33.97 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC------c-----------eeEEEEecCC-CCHHHHHHHHh--hcCceecC
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP------A-----------TSVIALGSDV-FHIYRLSSGLN--KRGWNTNS 63 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------~-----------l~vVaf~~~~-~~i~~l~d~L~--~rGW~v~~ 63 (143)
..++++..++|..+++.|++.|.++-+.-| + -++++|..++ .+...+.|.|+ ..|..+..
T Consensus 197 ~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~ 276 (331)
T d1pffa_ 197 DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGG 276 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCS
T ss_pred HHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcceecccCCC
Confidence 456788889999999999999888654322 1 5688888753 34556667765 23444433
Q ss_pred CC-------------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 64 LQ-------------F-----------PVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 64 ~~-------------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.. . |.-+|++|- -|..+.+++||++|++.+
T Consensus 277 ~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvG-----lE~~~DLi~Dl~~AL~~i 330 (331)
T d1pffa_ 277 PESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVG-----CENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECC-----SSCHHHHHHHHHHHHHTC
T ss_pred CceeEeCccccccccCCHHHHHhcCCCcCeEEEEee-----eCCHHHHHHHHHHHHHHh
Confidence 21 1 122566654 388999999999998753
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.08 E-value=1.7 Score=33.78 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCc-----------------eeEEEEecCC--CCHHHHHHHHh--hcCceecC
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPA-----------------TSVIALGSDV--FHIYRLSSGLN--KRGWNTNS 63 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~-----------------l~vVaf~~~~--~~i~~l~d~L~--~rGW~v~~ 63 (143)
-++++..++|..|++.|++.|.++-+.-|. ..+++|..++ .....+.+.|+ ..|..+..
T Consensus 265 lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg 344 (398)
T d1qgna_ 265 LRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGG 344 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCC
Confidence 467888899999999999999888554442 4688997642 34456777775 33443322
Q ss_pred C-------------CC-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHH
Q psy10208 64 L-------------QF-----------PVGIHICITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 64 ~-------------~~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
. .. +.-+|++|- -|.++.+++||+.|++.+
T Consensus 345 ~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG-----lEd~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 345 CESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-----VEDFDDLKADILQALDSI 398 (398)
T ss_dssp SSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-----SSCHHHHHHHHHHHHHHC
T ss_pred CcceeeCcchhccccCCHHHHHhcCCCcCEEEEEec-----cCCHHHHHHHHHHHHhcC
Confidence 1 11 122566664 378999999999998753
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=84.16 E-value=3.6 Score=30.55 Aligned_cols=91 Identities=7% Similarity=-0.017 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhhC--CCeeEeccCceeEEE-Eec-CCCCHHHHHHHHhhcCceecCC-------CCCCeeeEE
Q psy10208 5 NTTRSIIETVKYIEKELRSM--DGLFIFGTPATSVIA-LGS-DVFHIYRLSSGLNKRGWNTNSL-------QFPVGIHIC 73 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i--~g~~vlg~p~l~vVa-f~~-~~~~i~~l~d~L~~rGW~v~~~-------~~P~~ihi~ 73 (143)
+..+...+..+.+.+.|.+. +|+... .|.-..+. +.. ++.|...+.+.|.++|..+... ..+..+|++
T Consensus 298 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~ 376 (403)
T d1wsta1 298 KIIEFYKPRRDAMLEALEEYMPEGVEWT-KPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLN 376 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCEEC-CCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCeEEe-CCCceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEE
Confidence 34455556666777777764 345543 34332233 333 3566677899999999876321 124568888
Q ss_pred EEecccChhHHHHHHHHHHHHHHHH
Q psy10208 74 ITHMHTQPGVADKFISDVREELAII 98 (143)
Q Consensus 74 v~~~h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
+. .++++.+++-++-|++++++-
T Consensus 377 ~~--~~~~~~l~~al~rl~~~l~~~ 399 (403)
T d1wsta1 377 FT--YVPEETIREGVRRLAETIKEE 399 (403)
T ss_dssp CS--SSCHHHHHHHHHHHHHHHHHH
T ss_pred ec--CCCHHHHHHHHHHHHHHHHHH
Confidence 75 344577787777777777643
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=83.56 E-value=2.1 Score=31.67 Aligned_cols=85 Identities=9% Similarity=0.135 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeeEeccCceeE-EEEecCCCCHHHHHHH-HhhcCceecCC---CCCCeeeEEEEecccC
Q psy10208 6 TTRSIIETVKYIEKELRSMDGLFIFGTPATSV-IALGSDVFHIYRLSSG-LNKRGWNTNSL---QFPVGIHICITHMHTQ 80 (143)
Q Consensus 6 i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~v-Vaf~~~~~~i~~l~d~-L~~rGW~v~~~---~~P~~ihi~v~~~h~~ 80 (143)
..+...+..+.+.+.+++. |+++. .|+-.- +.+..+. +-.++..+ |+++|..+..- ..|..+|+++.. .
T Consensus 285 ~~~~~~~r~~~~~~~l~~~-g~~~~-~p~gg~f~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~---~ 358 (375)
T d1o4sa_ 285 MVQTFKERKNFVVERLKKM-GVKFV-EPEGAFYLFFKVRG-DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT---S 358 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCC-CCSBSSEEEEECSS-CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS---C
T ss_pred hHHHHHHHHHHHHHHHHhc-CceEe-cCCccEEEEEECCC-CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcC---C
Confidence 3444556677778888887 78865 455333 3334433 33445555 66789877542 236668888753 4
Q ss_pred hhHHHHHHHHHHHHHH
Q psy10208 81 PGVADKFISDVREELA 96 (143)
Q Consensus 81 ~~~~~~fl~Dl~~ai~ 96 (143)
++.+++.++-|++.++
T Consensus 359 ~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 359 IERLTEALDRIEDFLN 374 (375)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5677777777777653
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=5.8 Score=28.87 Aligned_cols=86 Identities=9% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHh-hCCCeeEeccCceeEEEE-e--cCCCCHHHHHHHH-hhcCceecCC-CC----CCeeeEEEEeccc
Q psy10208 10 IIETVKYIEKELR-SMDGLFIFGTPATSVIAL-G--SDVFHIYRLSSGL-NKRGWNTNSL-QF----PVGIHICITHMHT 79 (143)
Q Consensus 10 ~~~~a~~l~~~i~-~i~g~~vlg~p~l~vVaf-~--~~~~~i~~l~d~L-~~rGW~v~~~-~~----P~~ihi~v~~~h~ 79 (143)
..+..+.+.+.+. ..+++.+. .|+-..+.| . ....|-.+++++| ++.|..+..- .+ +..+|+++. +
T Consensus 266 ~~~r~~~~~~~~~~~~~~~~~~-~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~---~ 341 (361)
T d1d2fa_ 266 LKDNLTYIADKMNAAFPELNWQ-IPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG---C 341 (361)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCC-CCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---S
T ss_pred chhhHHHHHHHhhhhccccccc-ccCceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc---C
Confidence 3444555556554 35566543 354433333 2 2357888999987 5569988532 11 234888874 3
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q psy10208 80 QPGVADKFISDVREELAIIM 99 (143)
Q Consensus 80 ~~~~~~~fl~Dl~~ai~~~~ 99 (143)
.++.+++-++-|+++++.+|
T Consensus 342 ~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 342 PRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhcC
Confidence 45778888888998888764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=83.24 E-value=4.1 Score=30.37 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeeEeccCceeEEEEec---CCCCHHHHHHHHh-hcCceecC---CCCCCeeeEEEEec
Q psy10208 5 NTTRSIIETVKYIEKELRSMDGLFIFGTPATSVIALGS---DVFHIYRLSSGLN-KRGWNTNS---LQFPVGIHICITHM 77 (143)
Q Consensus 5 ~i~~~~~~~a~~l~~~i~~i~g~~vlg~p~l~vVaf~~---~~~~i~~l~d~L~-~rGW~v~~---~~~P~~ihi~v~~~ 77 (143)
+..+...+..+.+.+.|++++|+++. .|+...+.|-. ...+-.+++++|. +.|=.+.. +..+..+|+++..
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~g~~~~-~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~- 368 (388)
T d1j32a_ 291 EMLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT- 368 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCBCC-CCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEec-CCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeC-
Confidence 34455556778889999999998864 46655555532 2456677887764 56865533 2346779999863
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy10208 78 HTQPGVADKFISDVREELAII 98 (143)
Q Consensus 78 h~~~~~~~~fl~Dl~~ai~~~ 98 (143)
.++.+++-++-|+++++.+
T Consensus 369 --~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 369 --DLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp --CHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHh
Confidence 3567777888888887764
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=81.12 E-value=3.9 Score=31.54 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeeEeccC------c-----------eeEEEEecCC--CCHHHHHHHHh--hcCceec
Q psy10208 4 VNTTRSIIETVKYIEKELRSMDGLFIFGTP------A-----------TSVIALGSDV--FHIYRLSSGLN--KRGWNTN 62 (143)
Q Consensus 4 ~~i~~~~~~~a~~l~~~i~~i~g~~vlg~p------~-----------l~vVaf~~~~--~~i~~l~d~L~--~rGW~v~ 62 (143)
.-++++..++|..|++.|++.|.++-+.-| + -.+++|.... -....+.+.|+ ..|..+.
T Consensus 258 ~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlG 337 (394)
T d1e5ea_ 258 NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLG 337 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccC
Confidence 346788899999999999999998755433 1 5678887542 23455666665 2233222
Q ss_pred CCC-------------C-----------CCeeeEEEEecccChhHHHHHHHHHHHHHHHHH
Q psy10208 63 SLQ-------------F-----------PVGIHICITHMHTQPGVADKFISDVREELAIIM 99 (143)
Q Consensus 63 ~~~-------------~-----------P~~ihi~v~~~h~~~~~~~~fl~Dl~~ai~~~~ 99 (143)
... . |.-+|++|- -|.++.+++||+++++.+.
T Consensus 338 g~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVG-----lEd~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 338 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-----IEDADELIADFKQGLDALL 393 (394)
T ss_dssp SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-----SSCHHHHHHHHHHHHHHHH
T ss_pred CccceeECccccccccCCHHHHHhcCCCcCEEEEEec-----cCCHHHHHHHHHHHHHHhh
Confidence 110 0 112566664 3899999999999998875
|