Psyllid ID: psy10209

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHccccccEEccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccHHHEEEcccHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHccccHHHHcc
Coil and Loop (DISEMBL)
MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLhynrnnhievcgpqvptnFRFVIEQTLREFFKAIqdgkdqepswKKSIYKIISRmddpvpeyfkspnfleqle
Flexible Loop (DISEMBL)
MEKYARQAVSegvlhaedlhvsGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKaiqdgkdqepswKKSIYKIISRMDDPVPEYfkspnfleqle
Low Complexity Region (SEG)
MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Disordered region (IsUnstruct)
***********GVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDG*****SWKKSIYKIISR*******************
Disordered Region (DISOPRED)
*EKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLE***
Disordered Region (DISEMBL)
*********SEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Disordered Region (DISPRO)
*EK*ARQ*VSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q9U6A1	1556	Homeobox protein prospero	N/A	N/A	0.952	0.064	0.783	5e-44
P29617	1703	Homeobox protein prospero	no	N/A	0.952	0.059	0.773	6e-43
P34522	594	Homeobox protein ceh-26 O	yes	N/A	0.952	0.170	0.556	9e-31
P48437	737	Prospero homeobox protein	yes	N/A	0.943	0.135	0.552	7e-28
Q92786	737	Prospero homeobox protein	yes	N/A	0.943	0.135	0.552	7e-28
Q91018	736	Prospero homeobox protein	yes	N/A	0.943	0.135	0.552	8e-28
Q8BII1	593	Prospero homeobox protein	no	N/A	0.943	0.168	0.523	5e-24
Q3B8N5	592	Prospero homeobox protein	no	N/A	0.905	0.162	0.475	7e-21

>sp|Q9U6A1|PROS_DROVI Homeobox protein prospero OS=Drosophila virilis GN=pros PE=3 SV=1

 Score =  176 bits (445), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 83/106 (78%), Positives = 92/106 (86%), Gaps = 5/106 (4%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
            MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+EQTL
Sbjct: 1456 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVEQTL 1510

Query: 61   REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
            REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Sbjct: 1511 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 1556

Required for proper neuronal differentiation of most or all neurons and their precursors in central and peripheral nervous systems, axonal outgrowth and pathfinding. Not required for the specification of neuronal identity. May regulate transcription by binding to DNA.
Drosophila virilis (taxid: 7244)

>sp|P29617|PROS_DROME Homeobox protein prospero OS=Drosophila melanogaster GN=pros PE=1 SV=3

 Score =  172 bits (436), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 82/106 (77%), Positives = 91/106 (85%), Gaps = 5/106 (4%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
            MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+E TL
Sbjct: 1603 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTL 1657

Query: 61   REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
            REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Sbjct: 1658 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 1703

Required for proper neuronal differentiation of most or all neurons and their precursors in central and peripheral nervous systems, axonal outgrowth and pathfinding. Not required for the specification of neuronal identity. May regulate transcription by binding to DNA.

Drosophila melanogaster (taxid: 7227)

>sp|P34522|HM26_CAEEL Homeobox protein ceh-26 OS=Caenorhabditis elegans GN=ceh-26 PE=3 SV=2

 Score =  131 bits (330), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 82/106 (77%), Gaps = 5/106 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEK+ARQA++EG+    D+ VS + E+++VLN HYNRNNHI     + P    FV+++TL
Sbjct: 493 MEKFARQALAEGITDRNDIFVSKDSELFKVLNTHYNRNNHI-----KAPDRLVFVVQETL 547

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
           REF  AI+ GKD EPSWKK+IYK+I+R++D +P++FK PNFLE+LE
Sbjct: 548 REFHDAIKQGKDIEPSWKKTIYKVINRLEDQIPDFFKEPNFLERLE 593

Caenorhabditis elegans (taxid: 6239)

>sp|P48437|PROX1_MOUSE Prospero homeobox protein 1 OS=Mus musculus GN=Prox1 PE=1 SV=2

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct: 635 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 689

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
           REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct: 690 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 734

May play a fundamental role in early development of CNS. May regulate gene expression and development of postmitotic undifferentiated young neurons.

Mus musculus (taxid: 10090)

>sp|Q92786|PROX1_HUMAN Prospero homeobox protein 1 OS=Homo sapiens GN=PROX1 PE=1 SV=2

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct: 635 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 689

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
           REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct: 690 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 734

May play a fundamental role in early development of CNS. May regulate gene expression and development of postmitotic undifferentiated young neurons.

Homo sapiens (taxid: 9606)

>sp|Q91018|PROX1_CHICK Prospero homeobox protein 1 OS=Gallus gallus GN=PROX1 PE=2 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct: 634 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 688

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
           REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct: 689 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 733

May be essential in the development and function of the eye.

Gallus gallus (taxid: 9031)

>sp|Q8BII1|PROX2_MOUSE Prospero homeobox protein 2 OS=Mus musculus GN=Prox2 PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 73/105 (69%), Gaps = 5/105 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQA+S+G+ +A+ L V  + E++RVLN HYN+ N  EV     P  F  +   TL
Sbjct: 491 MEKYARQALSDGITNAQALAVLRDSELFRVLNTHYNKGNDFEV-----PDCFLEIAALTL 545

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
           +EFF+A+  GKD +PSWKK IYK+IS++D  VPE  KSP+FL  L
Sbjct: 546 KEFFRAVLAGKDSDPSWKKPIYKVISKLDSDVPEMLKSPSFLPGL 590

Transcription regulator. Does not seem to be essential for embryonic development and postnatal survival.

Mus musculus (taxid: 10090)

>sp|Q3B8N5|PROX2_HUMAN Prospero homeobox protein 2 OS=Homo sapiens GN=PROX2 PE=2 SV=3

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 5/101 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEK ARQA+S+GV + + L V    E+++ LN+HYN+ N  EV     P  F  +   TL
Sbjct: 495 MEKSARQAISDGVTNPKMLVVLRNSELFQALNMHYNKGNDFEV-----PDCFLEIASLTL 549

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNF 101
           +EFF+A+  G+D +PSWKK IYKIIS++D  +PE FKS ++
Sbjct: 550 QEFFRAVSAGRDSDPSWKKPIYKIISKLDSDIPEIFKSSSY 590


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,345,166
Number of Sequences: 539616
Number of extensions: 1679234
Number of successful extensions: 3387
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3371
Number of HSP's gapped (non-prelim): 11
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Transcription regulator. Does not seem to be essential for embryonic development and postnatal survival.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
322795755	114	hypothetical protein SINV_09615 [Solenop	1.0	0.929	0.849	2e-47
242013963	1231	homeobox protein prospero/prox-1/ceh-26,	0.952	0.082	0.830	2e-45
189239146	971	PREDICTED: similar to homeobox protein p	0.952	0.104	0.830	2e-45
270011107	1213	prospero [Tribolium castaneum]	0.952	0.083	0.830	3e-45
347971147	1852	AGAP004052-PA [Anopheles gambiae str. PE	0.952	0.054	0.811	2e-44
283135216	1321	homeobox protein prospero [Nasonia vitri	0.952	0.076	0.801	8e-44
307211735	101	Homeobox protein prospero [Harpegnathos	0.952	1.0	0.811	3e-43
307179058	101	Homeobox protein prospero [Camponotus fl	0.952	1.0	0.801	1e-42
390179558	1701	GA14403, isoform B [Drosophila pseudoobs	0.952	0.059	0.783	2e-42
390179560	1870	GA14403, isoform C [Drosophila pseudoobs	0.952	0.054	0.783	2e-42

>gi|322795755|gb|EFZ18434.1| hypothetical protein SINV_09615 [Solenopsis invicta]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/106 (84%), Positives = 97/106 (91%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAVSEGV + EDL V G+ EIYRVLNLHYNRNNHIEV GPQVPTNFR+V+EQTL
Sbjct: 9   MEKYARQAVSEGVKNVEDLRVGGDSEIYRVLNLHYNRNNHIEVWGPQVPTNFRYVVEQTL 68

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
           +EFFKAIQ GKD E SWKKSIYK+ISR+DDPVPEYFKSPNFLEQLE
Sbjct: 69  KEFFKAIQGGKDSEQSWKKSIYKVISRLDDPVPEYFKSPNFLEQLE 114

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013963|ref|XP_002427668.1| homeobox protein prospero/prox-1/ceh-26, putative [Pediculus humanus corporis] gi|212512098|gb|EEB14930.1| homeobox protein prospero/prox-1/ceh-26, putative [Pediculus humanus corporis]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/106 (83%), Positives = 95/106 (89%), Gaps = 5/106 (4%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
            MEKYARQAVSEG+ +AED+HVS + EIYRVLNLHYNRNNHIEV     P+NFRFV+EQTL
Sbjct: 1131 MEKYARQAVSEGIKNAEDIHVSADSEIYRVLNLHYNRNNHIEV-----PSNFRFVVEQTL 1185

Query: 61   REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
            REFFKAIQ GKD E SWKKSIYKIISRMDDPVP+YFKSPNFLEQLE
Sbjct: 1186 REFFKAIQTGKDTEQSWKKSIYKIISRMDDPVPDYFKSPNFLEQLE 1231

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239146|ref|XP_971664.2| PREDICTED: similar to homeobox protein prospero/prox-1 [Tribolium castaneum]

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/106 (83%), Positives = 96/106 (90%), Gaps = 5/106 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAVSEGV +AEDLHV G+ E+YRVLNLHYNRNNHIEV     P+NFRFV+EQTL
Sbjct: 871 MEKYARQAVSEGVKNAEDLHVGGDSELYRVLNLHYNRNNHIEV-----PSNFRFVVEQTL 925

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
           REFFKAIQ+G+D E SWKKSIYKIISR+DDPVPEYFKSPNFLEQLE
Sbjct: 926 REFFKAIQEGRDAEQSWKKSIYKIISRLDDPVPEYFKSPNFLEQLE 971

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011107|gb|EFA07555.1| prospero [Tribolium castaneum]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/106 (83%), Positives = 96/106 (90%), Gaps = 5/106 (4%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
            MEKYARQAVSEGV +AEDLHV G+ E+YRVLNLHYNRNNHIEV     P+NFRFV+EQTL
Sbjct: 1113 MEKYARQAVSEGVKNAEDLHVGGDSELYRVLNLHYNRNNHIEV-----PSNFRFVVEQTL 1167

Query: 61   REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
            REFFKAIQ+G+D E SWKKSIYKIISR+DDPVPEYFKSPNFLEQLE
Sbjct: 1168 REFFKAIQEGRDAEQSWKKSIYKIISRLDDPVPEYFKSPNFLEQLE 1213

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971147|ref|XP_309606.5| AGAP004052-PA [Anopheles gambiae str. PEST] gi|333466610|gb|EAA05345.5| AGAP004052-PA [Anopheles gambiae str. PEST]

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/106 (81%), Positives = 94/106 (88%), Gaps = 5/106 (4%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
            MEKYARQAVSEG+ +A+D+HVS + EIYRVLNLHYNRNNHIEV     P NFR+V+EQTL
Sbjct: 1752 MEKYARQAVSEGMKNADDIHVSNDSEIYRVLNLHYNRNNHIEV-----PQNFRYVVEQTL 1806

Query: 61   REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
            REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Sbjct: 1807 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 1852

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|283135216|ref|NP_001164363.1| homeobox protein prospero [Nasonia vitripennis]

 Score =  180 bits (457), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 85/106 (80%), Positives = 93/106 (87%), Gaps = 5/106 (4%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
            MEKYARQAVSEGV + EDL V G+ EIYRVLNLHYNRNNHIEV     P+NFR+V+EQTL
Sbjct: 1221 MEKYARQAVSEGVKNVEDLQVGGDSEIYRVLNLHYNRNNHIEV-----PSNFRYVVEQTL 1275

Query: 61   REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
            +EFFKAIQ GKD E SWKKSIYK+ISR+DDPVPEYFKSPNFLEQLE
Sbjct: 1276 KEFFKAIQGGKDTEQSWKKSIYKVISRLDDPVPEYFKSPNFLEQLE 1321

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211735|gb|EFN87730.1| Homeobox protein prospero [Harpegnathos saltator] gi|332027035|gb|EGI67131.1| Homeobox protein prospero [Acromyrmex echinatior]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/106 (81%), Positives = 94/106 (88%), Gaps = 5/106 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAVSEGV +AEDL V G+ EIYRVLNLHYNRNNHIEV     P+NFR+V+EQTL
Sbjct: 1   MEKYARQAVSEGVKNAEDLRVGGDSEIYRVLNLHYNRNNHIEV-----PSNFRYVVEQTL 55

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
           +EFFKAIQ GKD E SWKKSIYK+ISR+DDPVPEYFKSPNFLEQLE
Sbjct: 56  KEFFKAIQGGKDSEQSWKKSIYKVISRLDDPVPEYFKSPNFLEQLE 101

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179058|gb|EFN67530.1| Homeobox protein prospero [Camponotus floridanus]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/106 (80%), Positives = 93/106 (87%), Gaps = 5/106 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAVSEGV + EDL V G+ EIYRVLNLHYNRNNHIEV     P+NFR+V+EQTL
Sbjct: 1   MEKYARQAVSEGVKNVEDLRVGGDSEIYRVLNLHYNRNNHIEV-----PSNFRYVVEQTL 55

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
           +EFFKAIQ GKD E SWKKSIYK+ISR+DDPVPEYFKSPNFLEQLE
Sbjct: 56  KEFFKAIQGGKDSEQSWKKSIYKVISRLDDPVPEYFKSPNFLEQLE 101

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390179558|ref|XP_001359985.3| GA14403, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859896|gb|EAL29137.3| GA14403, isoform B [Drosophila pseudoobscura pseudoobscura]

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/106 (78%), Positives = 92/106 (86%), Gaps = 5/106 (4%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
            MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+EQTL
Sbjct: 1601 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVEQTL 1655

Query: 61   REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
            REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Sbjct: 1656 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 1701

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390179560|ref|XP_003736925.1| GA14403, isoform C [Drosophila pseudoobscura pseudoobscura] gi|388859897|gb|EIM52998.1| GA14403, isoform C [Drosophila pseudoobscura pseudoobscura]

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/106 (78%), Positives = 92/106 (86%), Gaps = 5/106 (4%)

Query: 1    MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
            MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+EQTL
Sbjct: 1770 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVEQTL 1824

Query: 61   REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
            REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Sbjct: 1825 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 1870

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0004595	1703	pros "prospero" [Drosophila me	0.952	0.059	0.773	2.3e-38
WB|WBGene00000448	594	pros-1 [Caenorhabditis elegans	0.952	0.170	0.556	5.8e-29
UNIPROTKB|P34522	594	ceh-26 "Homeobox protein ceh-2	0.952	0.170	0.556	5.8e-29
UNIPROTKB|F1NEH0	740	PROX1 "Prospero homeobox prote	0.952	0.136	0.561	1e-26
UNIPROTKB|F1P568	736	PROX1 "Prospero homeobox prote	0.943	0.135	0.552	5.6e-26
UNIPROTKB|Q91018	736	PROX1 "Prospero homeobox prote	0.943	0.135	0.552	5.6e-26
UNIPROTKB|E1BM20	737	PROX1 "Uncharacterized protein	0.943	0.135	0.552	5.6e-26
UNIPROTKB|E2RQY7	737	PROX1 "Uncharacterized protein	0.943	0.135	0.552	5.6e-26
UNIPROTKB|Q92786	737	PROX1 "Prospero homeobox prote	0.943	0.135	0.552	5.6e-26
UNIPROTKB|F1S2Y2	737	PROX1 "Uncharacterized protein	0.943	0.135	0.552	5.6e-26

FB|FBgn0004595 pros "prospero" [Drosophila melanogaster (taxid:7227)]

 Score = 425 (154.7 bits), Expect = 2.3e-38, P = 2.3e-38
 Identities = 82/106 (77%), Positives = 91/106 (85%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+E TL
Sbjct:  1603 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTL 1657

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
             REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Sbjct:  1658 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 1703

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0007422 "peripheral nervous system development" evidence=IMP;TAS

GO:0005634 "nucleus" evidence=ISS;NAS;IDA;TAS

GO:0045664 "regulation of neuron differentiation" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP;NAS;TAS

GO:0045180 "basal cortex" evidence=NAS;IDA

GO:0045179 "apical cortex" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS;TAS

GO:0007409 "axonogenesis" evidence=IMP;NAS

GO:0007399 "nervous system development" evidence=IMP;NAS;TAS

GO:0050909 "sensory perception of taste" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA;TAS

GO:0007402 "ganglion mother cell fate determination" evidence=TAS

GO:0008356 "asymmetric cell division" evidence=TAS

GO:0007400 "neuroblast fate determination" evidence=NAS;TAS

GO:0042676 "compound eye cone cell fate commitment" evidence=TAS

GO:0007465 "R7 cell fate commitment" evidence=IMP;TAS

GO:0007619 "courtship behavior" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0045178 "basal part of cell" evidence=NAS;TAS

GO:0007423 "sensory organ development" evidence=TAS

GO:0007419 "ventral cord development" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IMP

GO:0001708 "cell fate specification" evidence=TAS

GO:0001754 "eye photoreceptor cell differentiation" evidence=TAS

GO:0007405 "neuroblast proliferation" evidence=IMP

GO:0007406 "negative regulation of neuroblast proliferation" evidence=IMP

GO:0055060 "asymmetric neuroblast division resulting in ganglion mother cell formation" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0008049 "male courtship behavior" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0008104 "protein localization" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0060385 "axonogenesis involved in innervation" evidence=IMP

GO:0055059 "asymmetric neuroblast division" evidence=IMP

GO:0050771 "negative regulation of axonogenesis" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IMP

GO:0042673 "regulation of retinal cone cell fate specification" evidence=IGI;IMP

GO:0045676 "regulation of R7 cell differentiation" evidence=IGI;IMP

WB|WBGene00000448 pros-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 5.8e-29, P = 5.8e-29
 Identities = 59/106 (55%), Positives = 82/106 (77%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEK+ARQA++EG+    D+ VS + E+++VLN HYNRNNHI+      P    FV+++TL
Sbjct:   493 MEKFARQALAEGITDRNDIFVSKDSELFKVLNTHYNRNNHIKA-----PDRLVFVVQETL 547

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
             REF  AI+ GKD EPSWKK+IYK+I+R++D +P++FK PNFLE+LE
Sbjct:   548 REFHDAIKQGKDIEPSWKKTIYKVINRLEDQIPDFFKEPNFLERLE 593

GO:0005634 "nucleus" evidence=IEA;NAS

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0002119 "nematode larval development" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS

UNIPROTKB|P34522 ceh-26 "Homeobox protein ceh-26" [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 5.8e-29, P = 5.8e-29
 Identities = 59/106 (55%), Positives = 82/106 (77%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEK+ARQA++EG+    D+ VS + E+++VLN HYNRNNHI+      P    FV+++TL
Sbjct:   493 MEKFARQALAEGITDRNDIFVSKDSELFKVLNTHYNRNNHIKA-----PDRLVFVVQETL 547

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
             REF  AI+ GKD EPSWKK+IYK+I+R++D +P++FK PNFLE+LE
Sbjct:   548 REFHDAIKQGKDIEPSWKKTIYKVINRLEDQIPDFFKEPNFLERLE 593

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

UNIPROTKB|F1NEH0 PROX1 "Prospero homeobox protein 1" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 59/105 (56%), Positives = 77/105 (73%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  E    QVP  F  V + TL
Sbjct:   637 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFE----QVPERFLEVAQITL 692

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
             REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct:   693 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 737

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001938 "positive regulation of endothelial cell proliferation" evidence=IEA

GO:0001946 "lymphangiogenesis" evidence=IEA

GO:0002194 "hepatocyte cell migration" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010595 "positive regulation of endothelial cell migration" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0021542 "dentate gyrus development" evidence=IEA

GO:0021707 "cerebellar granule cell differentiation" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045071 "negative regulation of viral genome replication" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046619 "optic placode formation involved in camera-type eye formation" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0048845 "venous blood vessel morphogenesis" evidence=IEA

GO:0050692 "DBD domain binding" evidence=IEA

GO:0050693 "LBD domain binding" evidence=IEA

GO:0055005 "ventricular cardiac myofibril development" evidence=IEA

GO:0055009 "atrial cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=IEA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0060214 "endocardium formation" evidence=IEA

GO:0060298 "positive regulation of sarcomere organization" evidence=IEA

GO:0060412 "ventricular septum morphogenesis" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0060421 "positive regulation of heart growth" evidence=IEA

GO:0060849 "regulation of transcription involved in lymphatic endothelial cell fate commitment" evidence=IEA

GO:0070309 "lens fiber cell morphogenesis" evidence=IEA

GO:0070365 "hepatocyte differentiation" evidence=IEA

GO:0070858 "negative regulation of bile acid biosynthetic process" evidence=IEA

GO:0072574 "hepatocyte proliferation" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:2000179 "positive regulation of neural precursor cell proliferation" evidence=IEA

GO:2000979 "positive regulation of forebrain neuron differentiation" evidence=IEA

UNIPROTKB|F1P568 PROX1 "Prospero homeobox protein 1" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 58/105 (55%), Positives = 76/105 (72%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct:   634 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 688

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
             REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct:   689 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 733

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q91018 PROX1 "Prospero homeobox protein 1" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 58/105 (55%), Positives = 76/105 (72%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct:   634 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 688

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
             REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct:   689 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 733

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IEP

GO:0002088 "lens development in camera-type eye" evidence=IEP

GO:0001889 "liver development" evidence=IEP

GO:0007507 "heart development" evidence=IEP

GO:0043049 "otic placode formation" evidence=IEP

GO:0030910 "olfactory placode formation" evidence=IEP

GO:0021915 "neural tube development" evidence=IEP

GO:0001945 "lymph vessel development" evidence=IEP

GO:0021516 "dorsal spinal cord development" evidence=IEP

GO:0031016 "pancreas development" evidence=IEP

GO:0001822 "kidney development" evidence=IEP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0070309 "lens fiber cell morphogenesis" evidence=IEP

GO:0070365 "hepatocyte differentiation" evidence=IEP

GO:0055013 "cardiac muscle cell development" evidence=IEP

GO:0001946 "lymphangiogenesis" evidence=IEP

UNIPROTKB|E1BM20 PROX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 58/105 (55%), Positives = 76/105 (72%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct:   635 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 689

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
             REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct:   690 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 734

GO:2000979 "positive regulation of forebrain neuron differentiation" evidence=IEA

GO:2000179 "positive regulation of neural precursor cell proliferation" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0072574 "hepatocyte proliferation" evidence=IEA

GO:0070858 "negative regulation of bile acid biosynthetic process" evidence=IEA

GO:0070365 "hepatocyte differentiation" evidence=IEA

GO:0070309 "lens fiber cell morphogenesis" evidence=IEA

GO:0060849 "regulation of transcription involved in lymphatic endothelial cell fate commitment" evidence=IEA

GO:0060421 "positive regulation of heart growth" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0060412 "ventricular septum morphogenesis" evidence=IEA

GO:0060298 "positive regulation of sarcomere organization" evidence=IEA

GO:0060214 "endocardium formation" evidence=IEA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055009 "atrial cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055005 "ventricular cardiac myofibril development" evidence=IEA

GO:0050693 "LBD domain binding" evidence=IEA

GO:0050692 "DBD domain binding" evidence=IEA

GO:0048845 "venous blood vessel morphogenesis" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0046619 "optic placode formation involved in camera-type eye formation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045071 "negative regulation of viral genome replication" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0021707 "cerebellar granule cell differentiation" evidence=IEA

GO:0021542 "dentate gyrus development" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0010595 "positive regulation of endothelial cell migration" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0002194 "hepatocyte cell migration" evidence=IEA

GO:0001946 "lymphangiogenesis" evidence=IEA

GO:0001938 "positive regulation of endothelial cell proliferation" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|E2RQY7 PROX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 58/105 (55%), Positives = 76/105 (72%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct:   635 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 689

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
             REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct:   690 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 734

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q92786 PROX1 "Prospero homeobox protein 1" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 58/105 (55%), Positives = 76/105 (72%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct:   635 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 689

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
             REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct:   690 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 734

GO:0002194 "hepatocyte cell migration" evidence=IEA

GO:0031667 "response to nutrient levels" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0072574 "hepatocyte proliferation" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=ISS

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISS

GO:0060421 "positive regulation of heart growth" evidence=ISS

GO:0048845 "venous blood vessel morphogenesis" evidence=ISS

GO:0055005 "ventricular cardiac myofibril development" evidence=ISS

GO:0055009 "atrial cardiac muscle tissue morphogenesis" evidence=ISS

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=ISS

GO:0060214 "endocardium formation" evidence=ISS

GO:0060298 "positive regulation of sarcomere organization" evidence=ISS

GO:0001889 "liver development" evidence=IEP

GO:0031016 "pancreas development" evidence=IEP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0021516 "dorsal spinal cord development" evidence=ISS

GO:0060042 "retina morphogenesis in camera-type eye" evidence=ISS

GO:0043049 "otic placode formation" evidence=ISS

GO:0030910 "olfactory placode formation" evidence=ISS

GO:0021915 "neural tube development" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0070309 "lens fiber cell morphogenesis" evidence=IEP

GO:0060412 "ventricular septum morphogenesis" evidence=ISS

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=ISS

GO:0046619 "optic placode formation involved in camera-type eye formation" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0002088 "lens development in camera-type eye" evidence=IEP

GO:0007420 "brain development" evidence=IEP

GO:0030324 "lung development" evidence=IEP

GO:0001822 "kidney development" evidence=IEP

GO:0021542 "dentate gyrus development" evidence=ISS

GO:0021707 "cerebellar granule cell differentiation" evidence=ISS

GO:0097150 "neuronal stem cell maintenance" evidence=ISS

GO:2000179 "positive regulation of neural precursor cell proliferation" evidence=ISS

GO:2000979 "positive regulation of forebrain neuron differentiation" evidence=ISS

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0060836 "lymphatic endothelial cell differentiation" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0001946 "lymphangiogenesis" evidence=IDA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IEP

GO:0050693 "LBD domain binding" evidence=IPI

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0050692 "DBD domain binding" evidence=IPI

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0070365 "hepatocyte differentiation" evidence=IEP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0070858 "negative regulation of bile acid biosynthetic process" evidence=IMP

GO:0003677 "DNA binding" evidence=IMP

GO:0060849 "regulation of transcription involved in lymphatic endothelial cell fate commitment" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IC

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045071 "negative regulation of viral genome replication" evidence=IDA

GO:0001938 "positive regulation of endothelial cell proliferation" evidence=IDA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0010595 "positive regulation of endothelial cell migration" evidence=IDA

UNIPROTKB|F1S2Y2 PROX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 303 (111.7 bits), Expect = 5.6e-26, P = 5.6e-26
 Identities = 58/105 (55%), Positives = 76/105 (72%)

Query:     1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
             MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct:   635 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 689

Query:    61 REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
             REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct:   690 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 734

GO:0031016 "pancreas development" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0021707 "cerebellar granule cell differentiation" evidence=IEA

GO:0021542 "dentate gyrus development" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0010595 "positive regulation of endothelial cell migration" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0002194 "hepatocyte cell migration" evidence=IEA

GO:0001946 "lymphangiogenesis" evidence=IEA

GO:0001938 "positive regulation of endothelial cell proliferation" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:2000979 "positive regulation of forebrain neuron differentiation" evidence=IEA

GO:2000179 "positive regulation of neural precursor cell proliferation" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

GO:0072574 "hepatocyte proliferation" evidence=IEA

GO:0070858 "negative regulation of bile acid biosynthetic process" evidence=IEA

GO:0070365 "hepatocyte differentiation" evidence=IEA

GO:0070309 "lens fiber cell morphogenesis" evidence=IEA

GO:0060849 "regulation of transcription involved in lymphatic endothelial cell fate commitment" evidence=IEA

GO:0060421 "positive regulation of heart growth" evidence=IEA

GO:0060414 "aorta smooth muscle tissue morphogenesis" evidence=IEA

GO:0060412 "ventricular septum morphogenesis" evidence=IEA

GO:0060298 "positive regulation of sarcomere organization" evidence=IEA

GO:0060214 "endocardium formation" evidence=IEA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055009 "atrial cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055005 "ventricular cardiac myofibril development" evidence=IEA

GO:0050693 "LBD domain binding" evidence=IEA

GO:0050692 "DBD domain binding" evidence=IEA

GO:0048845 "venous blood vessel morphogenesis" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0046619 "optic placode formation involved in camera-type eye formation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045071 "negative regulation of viral genome replication" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34522	HM26_CAEEL	No assigned EC number	0.5566	0.9528	0.1700	yes	N/A
Q91018	PROX1_CHICK	No assigned EC number	0.5523	0.9433	0.1358	yes	N/A
P48437	PROX1_MOUSE	No assigned EC number	0.5523	0.9433	0.1356	yes	N/A
Q92786	PROX1_HUMAN	No assigned EC number	0.5523	0.9433	0.1356	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	6e-58

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score =  190 bits (484), Expect = 6e-58
 Identities = 82/106 (77%), Positives = 91/106 (85%), Gaps = 5/106 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQA++EGV  ++DL VS + E+YRVLNLHYNRNNHIEV     P NFRFV+EQTL
Sbjct: 808 MEKYARQAINEGVKTSDDLSVSRDSELYRVLNLHYNRNNHIEV-----PENFRFVVEQTL 862

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
           REFF+AI  GKD E SWKKSIYKIISR+DDPVPEYFKSPNFLEQLE
Sbjct: 863 REFFRAIIAGKDSEQSWKKSIYKIISRLDDPVPEYFKSPNFLEQLE 908

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF05044	158	HPD: Homeo-prospero domain; InterPro: IPR007738 Th	100.0
KOG3779|consensus	737		100.0

>PF05044 HPD: Homeo-prospero domain; InterPro: IPR007738 The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system []

Probab=100.00  E-value=1.7e-63  Score=375.97  Aligned_cols=101  Identities=68%  Similarity=1.154  Sum_probs=89.8

Q ss_pred             ChHHHHHHHHhcCCCCCceeeccchhHHHHHHhhhccCCCccccCCCCCccHHHHHHHHHHHHHHHHhcCCCCCcchhHH
Q psy10209          1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKS   80 (106)
Q Consensus         1 MEK~ARQAi~eGv~~~~~l~V~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~~tlrEFf~ai~~gkD~~psWKK~   80 (106)
                      ||||||||++|||+++++|+|+|||||||+|||||||+||||     ||++|++|+++||||||+||++|||+||||||+
T Consensus        58 MEK~ARqa~~eGv~~~~~l~V~rdsELfr~LN~HYNk~N~~e-----vP~~Fl~v~~~tLrEFf~AI~~gkD~dpsWKK~  132 (158)
T PF05044_consen   58 MEKFARQAVSEGVKNADDLRVTRDSELFRVLNMHYNKNNDFE-----VPDRFLEVVQITLREFFNAIQAGKDSDPSWKKP  132 (158)
T ss_dssp             HHHHHHHHHHHT-S-GGGSSSS-TTCHHHHHHHHHHTT-STT-------HHHHHHHHHHHHHHHHHHHCTCCCSTCCCHH
T ss_pred             HHHHHHHHHHccCCcHHHeeeccchHHHHHHHhhcccCCCcc-----CchhHHHHHHHHHHHHHHHHHcCCCCCccccHH
Confidence            899999999999999999999999999999999999999999     999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCccccCCCchhccC
Q psy10209         81 IYKIISRMDDPVPEYFKSPNFLEQLE  106 (106)
Q Consensus        81 IYKiI~kLD~~vPe~fks~~~l~~le  106 (106)
                      |||||||||++|||+|||||||++||
T Consensus       133 IYKvI~kLD~~vPe~FK~pn~l~~Le  158 (158)
T PF05044_consen  133 IYKVISKLDDPVPEFFKSPNFLEELE  158 (158)
T ss_dssp             HHHHHHCC-SS--GGCC-HHHCGGG-
T ss_pred             HHHHHHHccCcccHhhcCCchhhhcC
Confidence            99999999999999999999999998

Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm []. This family contains an atypical homeobox domain.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2LMD_A 1XPX_A 1MIJ_A.

>KOG3779|consensus

Probab=100.00  E-value=6.4e-54  Score=370.90  Aligned_cols=101  Identities=57%  Similarity=1.011  Sum_probs=100.3

Q ss_pred             ChHHHHHHHHhcCCCCCceeeccchhHHHHHHhhhccCCCccccCCCCCccHHHHHHHHHHHHHHHHhcCCCCCcchhHH
Q psy10209          1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKS   80 (106)
Q Consensus         1 MEK~ARQAi~eGv~~~~~l~V~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~~tlrEFf~ai~~gkD~~psWKK~   80 (106)
                      |||||||||+||||+.++|.|+|||||||+|||||||+||||     ||++|++|+|+||||||+||.+|||.||||||+
T Consensus       635 MEK~ARQAi~dGvT~~~ei~itrD~EL~r~LN~HYNk~N~~~-----~PeR~~~V~Q~TLREF~~AI~~GKDvdPSWKK~  709 (737)
T KOG3779|consen  635 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFE-----VPERFLEVAQITLREFFNAIIAGKDVDPSWKKA  709 (737)
T ss_pred             HHHHHHHHHhcccCchhheeeeccHHHHHHHHhhhccccccc-----ccHHHHHHHHHHHHHHHHHHhcCCcCCchHHHH
Confidence            899999999999999999999999999999999999999999     999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCccccCCCchhccC
Q psy10209         81 IYKIISRMDDPVPEYFKSPNFLEQLE  106 (106)
Q Consensus        81 IYKiI~kLD~~vPe~fks~~~l~~le  106 (106)
                      |||||||||++|||+||+||||++||
T Consensus       710 IYKVI~kLd~evPe~FK~PN~Lq~L~  735 (737)
T KOG3779|consen  710 IYKVICKLDSEVPEIFKSPNCLQELL  735 (737)
T ss_pred             HHHHHHhhhhhhhHhhcCccHHHHhh
Confidence            99999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
1xpx_A	163	Structural Basis Of Prospero-Dna Interaction; Impli		7e-44
1mij_A	152	Crystal Structure Of The Homeo-Prospero Domain Of D		3e-38
2lmd_A	174	Minimal Constraints Solution Nmr Structure Of Prosp		8e-29

>pdb|1XPX|A Chain A, Structural Basis Of Prospero-Dna Interaction; Implications For Transcription Regulation In Developing Cells Length = 163

Iteration: 1
 Score =  171 bits (434), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 82/106 (77%), Positives = 91/106 (85%), Gaps = 5/106 (4%)
Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+E TL
Sbjct: 63  MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTL 117
Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 106
           REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSPNFLEQLE
Sbjct: 118 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQLE 163

>pdb|1MIJ|A Chain A, Crystal Structure Of The Homeo-Prospero Domain Of D. Melanogaster Prospero Length = 152

Iteration: 1
 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 82/98 (83%), Gaps = 5/98 (5%)
Query: 2   EKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLR 61
           EKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+E TLR
Sbjct: 60  EKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTLR 114
Query: 62  EFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSP 99
           EFF+AIQ GKD E SWKKSIYKIISR DDPVPEYFKSP
Sbjct: 115 EFFRAIQGGKDTEQSWKKSIYKIISRXDDPVPEYFKSP 152

>pdb|2LMD|A Chain A, Minimal Constraints Solution Nmr Structure Of Prospero Homeobox Protein 1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4660b Length = 174

Iteration: 1
 Score =  121 bits (304), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct: 72  MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 126
Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
           REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct: 127 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1mij_A	152	Protein prospero; homeodomain, DNA-binding domain,	5e-51
2lmd_A	174	Prospero homeobox protein 1; structural genomics,	7e-51

>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A Length = 152

 Score =  157 bits (397), Expect = 5e-51
 Identities = 75/99 (75%), Positives = 84/99 (84%), Gaps = 5/99 (5%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+E TL
Sbjct: 59  MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTL 113

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSP 99
           REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSP
Sbjct: 114 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSP 152

>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens} Length = 174

 Score =  157 bits (398), Expect = 7e-51
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQA+++GV   E+L ++ +CE+YR LN+HYN+ N  EV     P  F  V + TL
Sbjct: 72  MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFEV-----PERFLEVAQITL 126

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSPNFLEQL 105
           REFF AI  GKD +PSWKK+IYK+I ++D  VPE FKSPN L++L
Sbjct: 127 REFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQEL 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
2lmd_A	174	Prospero homeobox protein 1; structural genomics,	100.0
1mij_A	152	Protein prospero; homeodomain, DNA-binding domain,	100.0

>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}

Probab=100.00  E-value=1.2e-62  Score=374.34  Aligned_cols=101  Identities=57%  Similarity=1.011  Sum_probs=100.0

Q ss_pred             ChHHHHHHHHhcCCCCCceeeccchhHHHHHHhhhccCCCccccCCCCCccHHHHHHHHHHHHHHHHhcCCCCCcchhHH
Q psy10209          1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKS   80 (106)
Q Consensus         1 MEK~ARQAi~eGv~~~~~l~V~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~~tlrEFf~ai~~gkD~~psWKK~   80 (106)
                      ||||||||++|||+++++|+|+|||||||+|||||||+||||     ||++|++|+++||||||+||++|||+||||||+
T Consensus        72 MEKfARQa~seGv~~~~dl~V~rdsEL~R~LN~HYNk~N~~e-----vP~~F~~v~~~tLrEFf~aI~~GkD~e~sWKK~  146 (174)
T 2lmd_A           72 MEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKANDFE-----VPERFLEVAQITLREFFNAIIAGKDVDPSWKKA  146 (174)
T ss_dssp             HHHHHHHHHHHTCSCGGGSSSSCTTHHHHHHHHHHCSSCSTT-----CCHHHHHHHHHHHHHHHHHHHHTCTTSTHHHHH
T ss_pred             HHHHHHHHHHccCCCHHHeeecchHHHHHHHHhhccccCCCc-----CcHHHHHHHHHHHHHHHHHHhcCCcCCchHHHH
Confidence            899999999999999999999999999999999999999999     999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCccccCCCchhccC
Q psy10209         81 IYKIISRMDDPVPEYFKSPNFLEQLE  106 (106)
Q Consensus        81 IYKiI~kLD~~vPe~fks~~~l~~le  106 (106)
                      |||||||||++|||+|||||||++|.
T Consensus       147 IYKvI~kLD~~vPe~Fkspn~l~~l~  172 (174)
T 2lmd_A          147 IYKVICKLDSEVPEIFKSPNCLQELL  172 (174)
T ss_dssp             HHHHHHTTCSSCCCCSSCGGGSGGGS
T ss_pred             HHHHHHHccccchHHhcCCchHHHhc
Confidence            99999999999999999999999984

>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A

Probab=100.00  E-value=3e-60  Score=355.42  Aligned_cols=94  Identities=80%  Similarity=1.306  Sum_probs=80.6

Q ss_pred             ChHHHHHHHHhcCCCCCceeeccchhHHHHHHhhhccCCCccccCCCCCccHHHHHHHHHHHHHHHHhcCCCCCcchhHH
Q psy10209          1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKS   80 (106)
Q Consensus         1 MEK~ARQAi~eGv~~~~~l~V~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~~tlrEFf~ai~~gkD~~psWKK~   80 (106)
                      ||||||||++|||+++++|+|+|||||||+|||||||+||||     ||++|++|+++||||||+||++|||+||||||+
T Consensus        59 MEKfARQa~seGv~~~~~l~V~rdsEl~r~LN~HYNk~N~~e-----vP~~Fl~v~~~tlrEFf~ai~~GkD~~~sWKK~  133 (152)
T 1mij_A           59 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIE-----VPQNFRFVVESTLREFFRAIQGGKDTEQSWKKS  133 (152)
T ss_dssp             HHHHHHHHHHC-------------CHHHHHHHHHHCTTCCSC-----CCHHHHHHHHHHHHHHHHHHHTTGGGSTTTTHH
T ss_pred             HHHHHHHHHHcccCCHHHeeecchHHHHHHHHhhhcccCCCc-----CcHHHHHHHHHHHHHHHHHHhcCCcCCchHHHH
Confidence            899999999999999999999999999999999999999999     999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCccccCC
Q psy10209         81 IYKIISRMDDPVPEYFKSP   99 (106)
Q Consensus        81 IYKiI~kLD~~vPe~fks~   99 (106)
                      |||||||||++|||+||||
T Consensus       134 IYKiI~kLD~~vPe~Fksp  152 (152)
T 1mij_A          134 IYKIISRMDDPVPEYFKSP  152 (152)
T ss_dssp             HHHHHHTCCCCCCGGGGCC
T ss_pred             HHHHHHHccccchHhhcCC
Confidence            9999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1mija_	152	a.4.1.1 (A:) Homeo-prospero domain of Prospero pro	7e-56

>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 152

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeo-prospero domain of Prospero protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  168 bits (426), Expect = 7e-56
 Identities = 75/99 (75%), Positives = 84/99 (84%), Gaps = 5/99 (5%)

Query: 1   MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTL 60
           MEKYARQAV+EG+   +DL ++G+ E+YRVLNLHYNRNNHIEV     P NFRFV+E TL
Sbjct: 59  MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEV-----PQNFRFVVESTL 113

Query: 61  REFFKAIQDGKDQEPSWKKSIYKIISRMDDPVPEYFKSP 99
           REFF+AIQ GKD E SWKKSIYKIISRMDDPVPEYFKSP
Sbjct: 114 REFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSP 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1mija_	152	Homeo-prospero domain of Prospero protein {Fruit f	100.0

>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeo-prospero domain of Prospero protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.8e-60  Score=351.46  Aligned_cols=94  Identities=80%  Similarity=1.306  Sum_probs=80.6

Q ss_pred             ChHHHHHHHHhcCCCCCceeeccchhHHHHHHhhhccCCCccccCCCCCccHHHHHHHHHHHHHHHHhcCCCCCcchhHH
Q psy10209          1 MEKYARQAVSEGVLHAEDLHVSGECEIYRVLNLHYNRNNHIEVCGPQVPTNFRFVIEQTLREFFKAIQDGKDQEPSWKKS   80 (106)
Q Consensus         1 MEK~ARQAi~eGv~~~~~l~V~rdsELfr~LN~HYNk~Ndfe~~~~~vP~~Fl~v~~~tlrEFf~ai~~gkD~~psWKK~   80 (106)
                      ||||||||++|||+++++|.|+|||||||+|||||||+||||     ||++|++|+++||||||.||++|||+||||||+
T Consensus        59 MEKfARQa~~eGi~~~~~i~v~rdsEl~r~LN~HYNk~N~~e-----vP~~F~~v~~~TLrEFf~Ai~~gkD~e~sWKK~  133 (152)
T d1mija_          59 MEKYARQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIE-----VPQNFRFVVESTLREFFRAIQGGKDTEQSWKKS  133 (152)
T ss_dssp             HHHHHHHHHHC-------------CHHHHHHHHHHCTTCCSC-----CCHHHHHHHHHHHHHHHHHHHTTGGGSTTTTHH
T ss_pred             HHHHHHHHHHhhcccHHHeeecchHHHHHHHHHhhcccCCCc-----CcHHHHHHHHHHHHHHHHHHHcCCcCCchhhHH
Confidence            899999999999999999999999999999999999999999     999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCccccCC
Q psy10209         81 IYKIISRMDDPVPEYFKSP   99 (106)
Q Consensus        81 IYKiI~kLD~~vPe~fks~   99 (106)
                      |||||||||++|||+||||
T Consensus       134 IYKvI~kLD~~vPe~FksP  152 (152)
T d1mija_         134 IYKIISRMDDPVPEYFKSP  152 (152)
T ss_dssp             HHHHHHTCCCCCCGGGGCC
T ss_pred             HHHHHHHccCCchhhccCC
Confidence            9999999999999999998